Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014462.t1 | XP_013462189.1 | 91.8 | 294 | 7 | 2 | 1 | 277 | 1 | 294 | 2.70E-153 | 551.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014462.t1 | Q9FXH7 | 41.8 | 347 | 119 | 16 | 1 | 271 | 1 | 340 | 3.4e-51 | 203.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014462.t1 | A0A072V2G0 | 91.8 | 294 | 7 | 2 | 1 | 277 | 1 | 294 | 2.0e-153 | 551.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014462.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014462.t1 | MTR_3g112510 | 90.476 | 294 | 11 | 2 | 1 | 277 | 1 | 294 | 0.0 | 518 |
| MS.gene014462.t1 | MTR_8g076620 | 53.191 | 235 | 85 | 8 | 57 | 271 | 97 | 326 | 2.12e-64 | 205 |
| MS.gene014462.t1 | MTR_5g021130 | 40.673 | 327 | 136 | 14 | 1 | 274 | 1 | 322 | 7.27e-54 | 177 |
| MS.gene014462.t1 | MTR_4g071110 | 49.650 | 143 | 64 | 4 | 81 | 221 | 14 | 150 | 3.52e-39 | 138 |
| MS.gene014462.t1 | MTR_1g023230 | 48.241 | 199 | 48 | 7 | 25 | 169 | 32 | 229 | 1.32e-37 | 133 |
| MS.gene014462.t1 | MTR_5g089750 | 44.242 | 165 | 47 | 6 | 84 | 212 | 249 | 404 | 9.77e-31 | 119 |
| MS.gene014462.t1 | MTR_3g014660 | 40.127 | 157 | 59 | 6 | 84 | 209 | 134 | 286 | 1.26e-26 | 106 |
| MS.gene014462.t1 | MTR_8g039110 | 35.266 | 207 | 87 | 7 | 84 | 250 | 124 | 323 | 1.78e-26 | 105 |
| MS.gene014462.t1 | MTR_0363s0040 | 75.556 | 45 | 11 | 0 | 84 | 128 | 124 | 168 | 3.08e-19 | 84.7 |
| MS.gene014462.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 86 | 118 | 44 | 76 | 1.99e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014462.t1 | AT1G19790 | 43.516 | 347 | 113 | 17 | 1 | 271 | 1 | 340 | 2.72e-68 | 215 |
| MS.gene014462.t1 | AT1G19790 | 43.516 | 347 | 113 | 17 | 1 | 271 | 1 | 340 | 2.72e-68 | 215 |
| MS.gene014462.t1 | AT1G75520 | 42.577 | 357 | 107 | 17 | 1 | 273 | 1 | 343 | 2.85e-63 | 202 |
| MS.gene014462.t1 | AT5G66350 | 50.679 | 221 | 62 | 10 | 84 | 271 | 120 | 326 | 1.16e-54 | 180 |
| MS.gene014462.t1 | AT5G66350 | 50.000 | 216 | 62 | 9 | 84 | 266 | 120 | 322 | 3.66e-53 | 176 |
| MS.gene014462.t1 | AT5G66350 | 50.233 | 215 | 61 | 9 | 84 | 265 | 120 | 321 | 5.17e-53 | 176 |
| MS.gene014462.t1 | AT3G51060 | 49.780 | 227 | 74 | 10 | 82 | 271 | 142 | 365 | 5.67e-52 | 174 |
| MS.gene014462.t1 | AT4G36260 | 52.830 | 159 | 48 | 4 | 78 | 210 | 88 | 245 | 1.26e-43 | 151 |
| MS.gene014462.t1 | AT2G18120 | 41.629 | 221 | 101 | 7 | 1 | 212 | 6 | 207 | 1.96e-43 | 147 |
| MS.gene014462.t1 | AT2G18120 | 41.096 | 219 | 103 | 7 | 1 | 212 | 6 | 205 | 1.03e-41 | 143 |
| MS.gene014462.t1 | AT2G21400 | 42.000 | 200 | 81 | 8 | 75 | 270 | 1 | 169 | 5.45e-40 | 137 |
| MS.gene014462.t1 | AT2G21400 | 42.784 | 194 | 76 | 8 | 81 | 270 | 6 | 168 | 8.97e-40 | 137 |
| MS.gene014462.t1 | AT2G21400 | 42.574 | 202 | 92 | 9 | 75 | 270 | 1 | 184 | 5.11e-39 | 135 |
| MS.gene014462.t1 | AT2G21400 | 43.367 | 196 | 87 | 9 | 81 | 270 | 6 | 183 | 8.58e-39 | 134 |
| MS.gene014462.t1 | AT5G12330 | 46.250 | 160 | 50 | 7 | 84 | 209 | 112 | 269 | 1.80e-29 | 114 |
| MS.gene014462.t1 | AT5G12330 | 46.250 | 160 | 50 | 7 | 84 | 209 | 112 | 269 | 1.80e-29 | 114 |
| MS.gene014462.t1 | AT5G12330 | 46.250 | 160 | 50 | 7 | 84 | 209 | 199 | 356 | 2.08e-29 | 115 |
| MS.gene014462.t1 | AT5G33210 | 65.278 | 72 | 23 | 2 | 82 | 151 | 15 | 86 | 4.70e-25 | 96.7 |
| MS.gene014462.t1 | AT5G33210 | 65.278 | 72 | 23 | 2 | 82 | 151 | 50 | 121 | 2.74e-24 | 96.7 |
| MS.gene014462.t1 | AT3G54430 | 37.500 | 136 | 77 | 3 | 80 | 209 | 37 | 170 | 3.63e-23 | 94.0 |
| MS.gene014462.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 84 | 129 | 112 | 157 | 8.00e-21 | 88.6 |
Find 68 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACCGTATTAATTAATT+AGG | 0.252373 | 3.1:+89761066 | None:intergenic |
| GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3.1:-89761240 | MS.gene014462:CDS |
| TATTAATTAATTAGGATGTT+GGG | 0.323138 | 3.1:+89761074 | None:intergenic |
| GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3.1:+89761261 | None:intergenic |
| AGCTCCGCTCAATGCTTTCA+TGG | 0.372783 | 3.1:-89761121 | MS.gene014462:CDS |
| GATGAGTGTGAAAGAAGATT+TGG | 0.383103 | 3.1:-89762292 | MS.gene014462:CDS |
| ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3.1:+89761248 | None:intergenic |
| TTGAACATTTACAATGCGTT+TGG | 0.402855 | 3.1:-89762352 | MS.gene014462:CDS |
| CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3.1:-89762085 | MS.gene014462:CDS |
| AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3.1:+89762116 | None:intergenic |
| CGTTCACGGCGTTTAGCAGC+TGG | 0.414213 | 3.1:+89762130 | None:intergenic |
| CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3.1:-89761408 | MS.gene014462:CDS |
| ACAACAAAGGGTTAGAGATA+TGG | 0.425274 | 3.1:-89762387 | MS.gene014462:CDS |
| TGCTACTTAGGGTTGGAGTT+GGG | 0.432629 | 3.1:-89761438 | MS.gene014462:intron |
| GTATTAATTAATTAGGATGT+TGG | 0.434180 | 3.1:+89761073 | None:intergenic |
| ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3.1:-89761249 | MS.gene014462:CDS |
| AAACACATGTTAAGAGTACT+TGG | 0.440077 | 3.1:-89762156 | MS.gene014462:CDS |
| CTGCTACTTAGGGTTGGAGT+TGG | 0.452789 | 3.1:-89761439 | MS.gene014462:intron |
| ATTGAGCGGAGCTGAGTAAA+GGG | 0.455523 | 3.1:+89761131 | None:intergenic |
| GTTCTCCAGGAGTAACCTTT+CGG | 0.458523 | 3.1:-89761395 | MS.gene014462:CDS |
| AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3.1:-89761288 | MS.gene014462:CDS |
| TGTTCAATGCGCGTATCAAA+CGG | 0.468547 | 3.1:-89761337 | MS.gene014462:CDS |
| CTCAATGCTTTCATGGCAGC+TGG | 0.470851 | 3.1:-89761114 | MS.gene014462:CDS |
| TACGCGCATTGAACATGATC+TGG | 0.473149 | 3.1:+89761345 | None:intergenic |
| CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3.1:+89761237 | None:intergenic |
| ATTTACAATGCGTTTGGAGC+GGG | 0.476042 | 3.1:-89762346 | MS.gene014462:CDS |
| ATTAATTAATTAGGATGTTG+GGG | 0.494474 | 3.1:+89761075 | None:intergenic |
| CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3.1:+89762085 | None:intergenic |
| TGAGTACTGCAACAAATGGC+TGG | 0.507692 | 3.1:-89762505 | None:intergenic |
| AGGAGATCTATAACAACAAA+GGG | 0.518436 | 3.1:-89762399 | MS.gene014462:CDS |
| ACACACCGAAAGGTTACTCC+TGG | 0.521457 | 3.1:+89761390 | None:intergenic |
| CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3.1:-89761237 | MS.gene014462:CDS |
| TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3.1:-89761324 | MS.gene014462:CDS |
| CATTGAGCGGAGCTGAGTAA+AGG | 0.525999 | 3.1:+89761130 | None:intergenic |
| TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3.1:-89762257 | MS.gene014462:CDS |
| AAAGAAGATTTGGTATAATG+AGG | 0.534847 | 3.1:-89762282 | MS.gene014462:CDS |
| GAACTTGTTGTAAGAGTCGA+GGG | 0.537704 | 3.1:-89762189 | MS.gene014462:CDS |
| ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3.1:-89761234 | MS.gene014462:CDS |
| ACTCCTGGAGAACTCACCTC+TGG | 0.545749 | 3.1:+89761405 | None:intergenic |
| CGACACACAGAAATTAATCA+AGG | 0.547183 | 3.1:-89762049 | MS.gene014462:intron |
| CCTGGAGAACTCACCTCTGG+TGG | 0.547209 | 3.1:+89761408 | None:intergenic |
| AGTAAAGGGAAGGGTCGAAT+GGG | 0.547906 | 3.1:+89761145 | None:intergenic |
| GAGTAAAGGGAAGGGTCGAA+TGG | 0.551923 | 3.1:+89761144 | None:intergenic |
| GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3.1:-89761373 | MS.gene014462:CDS |
| CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3.1:-89761321 | MS.gene014462:CDS |
| AGCGGAGCTGAGTAAAGGGA+AGG | 0.586546 | 3.1:+89761135 | None:intergenic |
| CATTTACAATGCGTTTGGAG+CGG | 0.587822 | 3.1:-89762347 | MS.gene014462:CDS |
| TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3.1:-89762274 | MS.gene014462:CDS |
| ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3.1:+89761264 | None:intergenic |
| GAGGAGATCTATAACAACAA+AGG | 0.594462 | 3.1:-89762400 | MS.gene014462:CDS |
| AGAATTATTGTTAAGAAACG+AGG | 0.601425 | 3.1:-89762419 | MS.gene014462:CDS |
| AGAACTTGTTGTAAGAGTCG+AGG | 0.607559 | 3.1:-89762190 | MS.gene014462:CDS |
| GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3.1:+89761201 | None:intergenic |
| AGGGTCGAATGGGATACCGC+TGG | 0.611002 | 3.1:+89761155 | None:intergenic |
| TAAATGTTCAAGCTTTGTTG+TGG | 0.618391 | 3.1:+89762364 | None:intergenic |
| CTGGAGAACTCACCTCTGGT+GGG | 0.629708 | 3.1:+89761409 | None:intergenic |
| ACTCACTCTCACACACCGAA+AGG | 0.630422 | 3.1:+89761380 | None:intergenic |
| GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3.1:-89762271 | MS.gene014462:CDS |
| TTAATTAATTAGGATGTTGG+GGG | 0.645627 | 3.1:+89761076 | None:intergenic |
| AACACATGTTAAGAGTACTT+GGG | 0.648062 | 3.1:-89762155 | MS.gene014462:CDS |
| AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3.1:-89761320 | MS.gene014462:CDS |
| GAGTACTGCAACAAATGGCT+GGG | 0.651398 | 3.1:-89762504 | None:intergenic |
| GCGGAGCTGAGTAAAGGGAA+GGG | 0.669522 | 3.1:+89761136 | None:intergenic |
| GCAACTACAGCTACAACCAG+CGG | 0.670400 | 3.1:-89761171 | MS.gene014462:CDS |
| GTTGGGACAATTCCCACCAG+AGG | 0.679398 | 3.1:-89761421 | MS.gene014462:CDS |
| GCTGCCATGAAAGCATTGAG+CGG | 0.695869 | 3.1:+89761117 | None:intergenic |
| GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3.1:-89761369 | MS.gene014462:CDS |
| GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3.1:-89762250 | MS.gene014462:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3.1:89762038-89762057 | MS.gene014462:intron | 10.0% |
| !! | ACATACATACATACATATAT+AGG | - | chr3.1:89761638-89761657 | MS.gene014462:intron | 20.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3.1:89761585-89761604 | None:intergenic | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3.1:89761740-89761759 | MS.gene014462:intron | 20.0% |
| ! | AAAACAGTAACAAGTTATGA+TGG | + | chr3.1:89761920-89761939 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3.1:89761859-89761878 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3.1:89761581-89761600 | None:intergenic | 25.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | chr3.1:89761151-89761170 | MS.gene014462:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3.1:89761580-89761599 | None:intergenic | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | chr3.1:89761288-89761307 | MS.gene014462:CDS | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3.1:89762053-89762072 | MS.gene014462:CDS | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3.1:89761865-89761884 | MS.gene014462:intron | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3.1:89761974-89761993 | None:intergenic | 25.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3.1:89762282-89762301 | MS.gene014462:CDS | 30.0% | |
| AGGAGATCTATAACAACAAA+GGG | - | chr3.1:89761171-89761190 | MS.gene014462:CDS | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3.1:89761767-89761786 | None:intergenic | 30.0% | |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3.1:89761627-89761646 | None:intergenic | 30.0% | |
| TGACGAACTCATCAAATTAT+TGG | - | chr3.1:89761994-89762013 | MS.gene014462:intron | 30.0% | |
| TTGAACATTTACAATGCGTT+TGG | - | chr3.1:89761218-89761237 | MS.gene014462:CDS | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3.1:89761967-89761986 | None:intergenic | 30.0% |
| !! | AAACACATGTTAAGAGTACT+TGG | - | chr3.1:89761414-89761433 | MS.gene014462:CDS | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | chr3.1:89761415-89761434 | MS.gene014462:CDS | 30.0% |
| !! | AATTTTCTTGACTGCTACTT+AGG | - | chr3.1:89762120-89762139 | MS.gene014462:CDS | 30.0% |
| !! | ATTTTCTTGACTGCTACTTA+GGG | - | chr3.1:89762121-89762140 | MS.gene014462:CDS | 30.0% |
| !! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3.1:89761088-89761107 | MS.gene014462:CDS | 30.0% |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3.1:89761209-89761228 | None:intergenic | 30.0% |
| !!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3.1:89761803-89761822 | None:intergenic | 30.0% |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3.1:89761949-89761968 | None:intergenic | 35.0% | |
| ACAACAAAGGGTTAGAGATA+TGG | - | chr3.1:89761183-89761202 | MS.gene014462:CDS | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3.1:89762309-89762328 | None:intergenic | 35.0% | |
| CGACACACAGAAATTAATCA+AGG | - | chr3.1:89761521-89761540 | MS.gene014462:intron | 35.0% | |
| GAGGAGATCTATAACAACAA+AGG | - | chr3.1:89761170-89761189 | MS.gene014462:CDS | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | chr3.1:89761278-89761297 | MS.gene014462:CDS | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3.1:89762312-89762331 | None:intergenic | 35.0% | |
| GTATGTATGTATAGCTAGCT+AGG | + | chr3.1:89761628-89761647 | None:intergenic | 35.0% | |
| GTTAAGGTCTAGTCATATAG+AGG | + | chr3.1:89761843-89761862 | None:intergenic | 35.0% | |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3.1:89762372-89762391 | None:intergenic | 35.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3.1:89762321-89762340 | MS.gene014462:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3.1:89762325-89762344 | None:intergenic | 40.0% | |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3.1:89761457-89761476 | None:intergenic | 40.0% | |
| CATTTACAATGCGTTTGGAG+CGG | - | chr3.1:89761223-89761242 | MS.gene014462:CDS | 40.0% | |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3.1:89761950-89761969 | None:intergenic | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3.1:89761313-89761332 | MS.gene014462:CDS | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3.1:89761575-89761594 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3.1:89762246-89762265 | MS.gene014462:CDS | 40.0% | |
| TGTTCAATGCGCGTATCAAA+CGG | - | chr3.1:89762233-89762252 | MS.gene014462:CDS | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3.1:89761576-89761595 | None:intergenic | 40.0% | |
| TTTGAATATGGAACCCCACT+TGG | - | chr3.1:89761877-89761896 | MS.gene014462:intron | 40.0% | |
| TTTGGTATAATGAGGCGTAG+TGG | - | chr3.1:89761296-89761315 | MS.gene014462:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3.1:89761224-89761243 | MS.gene014462:CDS | 40.0% |
| !! | AGAACTTGTTGTAAGAGTCG+AGG | - | chr3.1:89761380-89761399 | MS.gene014462:CDS | 40.0% |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3.1:89762264-89762283 | MS.gene014462:CDS | 40.0% |
| !! | ATGGCTGGGTTATTTTGTCT+AGG | - | chr3.1:89761080-89761099 | MS.gene014462:CDS | 40.0% |
| !! | CAAGTTATGATGGATAACCG+TGG | + | chr3.1:89761910-89761929 | None:intergenic | 40.0% |
| !! | GAACTTGTTGTAAGAGTCGA+GGG | - | chr3.1:89761381-89761400 | MS.gene014462:CDS | 40.0% |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3.1:89762250-89762269 | MS.gene014462:CDS | 45.0% | |
| AGTAAAGGGAAGGGTCGAAT+GGG | + | chr3.1:89762428-89762447 | None:intergenic | 45.0% | |
| ATATGGAACCCCACTTGGAT+TGG | - | chr3.1:89761882-89761901 | MS.gene014462:intron | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3.1:89762336-89762355 | MS.gene014462:CDS | 45.0% | |
| ATTGAGCGGAGCTGAGTAAA+GGG | + | chr3.1:89762442-89762461 | None:intergenic | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3.1:89762336-89762355 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3.1:89762333-89762352 | MS.gene014462:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3.1:89762330-89762349 | MS.gene014462:CDS | 45.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3.1:89761320-89761339 | MS.gene014462:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3.1:89762201-89762220 | MS.gene014462:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3.1:89762197-89762216 | MS.gene014462:CDS | 45.0% | |
| GTTCTCCAGGAGTAACCTTT+CGG | - | chr3.1:89762175-89762194 | MS.gene014462:CDS | 45.0% | |
| TACGCGCATTGAACATGATC+TGG | + | chr3.1:89762228-89762247 | None:intergenic | 45.0% | |
| ! | TCTTGACTGCTACTTAGGGT+TGG | - | chr3.1:89762125-89762144 | MS.gene014462:CDS | 45.0% |
| ! | TGCTACTTAGGGTTGGAGTT+GGG | - | chr3.1:89762132-89762151 | MS.gene014462:CDS | 45.0% |
| AACCGTGGATCCAATCCAAG+TGG | + | chr3.1:89761895-89761914 | None:intergenic | 50.0% | |
| ACACACCGAAAGGTTACTCC+TGG | + | chr3.1:89762183-89762202 | None:intergenic | 50.0% | |
| ACCGTGGATCCAATCCAAGT+GGG | + | chr3.1:89761894-89761913 | None:intergenic | 50.0% | |
| ACTCACTCTCACACACCGAA+AGG | + | chr3.1:89762193-89762212 | None:intergenic | 50.0% | |
| AGCTCCGCTCAATGCTTTCA+TGG | - | chr3.1:89762449-89762468 | MS.gene014462:CDS | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3.1:89762249-89762268 | MS.gene014462:CDS | 50.0% | |
| CATTGAGCGGAGCTGAGTAA+AGG | + | chr3.1:89762443-89762462 | None:intergenic | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3.1:89761488-89761507 | None:intergenic | 50.0% | |
| CTCAATGCTTTCATGGCAGC+TGG | - | chr3.1:89762456-89762475 | MS.gene014462:CDS | 50.0% | |
| GAGTAAAGGGAAGGGTCGAA+TGG | + | chr3.1:89762429-89762448 | None:intergenic | 50.0% | |
| GCAACTACAGCTACAACCAG+CGG | - | chr3.1:89762399-89762418 | MS.gene014462:CDS | 50.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | chr3.1:89761299-89761318 | MS.gene014462:CDS | 50.0% | |
| ! | CTGCTACTTAGGGTTGGAGT+TGG | - | chr3.1:89762131-89762150 | MS.gene014462:CDS | 50.0% |
| !! | GCTGCCATGAAAGCATTGAG+CGG | + | chr3.1:89762456-89762475 | None:intergenic | 50.0% |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3.1:89762168-89762187 | None:intergenic | 55.0% | |
| AGCGGAGCTGAGTAAAGGGA+AGG | + | chr3.1:89762438-89762457 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3.1:89761572-89761591 | None:intergenic | 55.0% | |
| CCGTGGATCCAATCCAAGTG+GGG | + | chr3.1:89761893-89761912 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3.1:89761485-89761504 | MS.gene014462:intron | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3.1:89762164-89762183 | None:intergenic | 55.0% | |
| GCGGAGCTGAGTAAAGGGAA+GGG | + | chr3.1:89762437-89762456 | None:intergenic | 55.0% | |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3.1:89762149-89762168 | MS.gene014462:CDS | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3.1:89761565-89761584 | None:intergenic | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3.1:89761552-89761571 | None:intergenic | 55.0% | |
| ! | CCCCACTTGGATTGGATCCA+CGG | - | chr3.1:89761890-89761909 | MS.gene014462:intron | 55.0% |
| AGGGTCGAATGGGATACCGC+TGG | + | chr3.1:89762418-89762437 | None:intergenic | 60.0% | |
| CAACCACCCATCCCTACCAC+AGG | - | chr3.1:89761566-89761585 | MS.gene014462:intron | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3.1:89762162-89762181 | MS.gene014462:CDS | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3.1:89762165-89762184 | None:intergenic | 60.0% | |
| CGTTCACGGCGTTTAGCAGC+TGG | + | chr3.1:89761443-89761462 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3.1:89761566-89761585 | None:intergenic | 60.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3.1:89761560-89761579 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 89761080 | 89762512 | 89761080 | ID=MS.gene014462 |
| chr3.1 | mRNA | 89761080 | 89762512 | 89761080 | ID=MS.gene014462.t1;Parent=MS.gene014462 |
| chr3.1 | exon | 89762050 | 89762512 | 89762050 | ID=MS.gene014462.t1.exon1;Parent=MS.gene014462.t1 |
| chr3.1 | CDS | 89762050 | 89762512 | 89762050 | ID=cds.MS.gene014462.t1;Parent=MS.gene014462.t1 |
| chr3.1 | exon | 89761080 | 89761450 | 89761080 | ID=MS.gene014462.t1.exon2;Parent=MS.gene014462.t1 |
| chr3.1 | CDS | 89761080 | 89761450 | 89761080 | ID=cds.MS.gene014462.t1;Parent=MS.gene014462.t1 |
| Gene Sequence |
| Protein sequence |
