Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014479.t1 | PNX73002.1 | 42.6 | 854 | 185 | 9 | 105 | 742 | 1 | 765 | 1.90E-160 | 577 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014479.t1 | Q9LKR4 | 32.8 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 8.5e-16 | 87.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014479.t1 | A0A2K3L384 | 42.6 | 854 | 185 | 9 | 105 | 742 | 1 | 765 | 1.4e-160 | 577.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014479.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014479.t1 | MTR_3g080590 | 85.065 | 154 | 19 | 1 | 1 | 150 | 1 | 154 | 2.63e-75 | 246 |
| MS.gene014479.t1 | MTR_4g007830 | 41.472 | 299 | 131 | 7 | 883 | 1147 | 50 | 338 | 1.56e-59 | 209 |
| MS.gene014479.t1 | MTR_8g089760 | 51.250 | 160 | 71 | 3 | 990 | 1147 | 1 | 155 | 2.59e-46 | 164 |
| MS.gene014479.t1 | MTR_7g446520 | 45.078 | 193 | 91 | 2 | 94 | 286 | 81 | 258 | 3.78e-43 | 160 |
| MS.gene014479.t1 | MTR_0645s0010 | 67.593 | 108 | 29 | 3 | 284 | 391 | 24 | 125 | 1.16e-34 | 129 |
| MS.gene014479.t1 | MTR_7g446480 | 50.893 | 112 | 55 | 0 | 175 | 286 | 140 | 251 | 5.69e-30 | 122 |
| MS.gene014479.t1 | MTR_1g009820 | 62.195 | 82 | 27 | 2 | 1066 | 1147 | 1 | 78 | 3.20e-28 | 110 |
| MS.gene014479.t1 | MTR_7g028855 | 43.506 | 154 | 78 | 2 | 94 | 241 | 113 | 263 | 6.92e-28 | 119 |
| MS.gene014479.t1 | MTR_7g446510 | 50.000 | 112 | 56 | 0 | 175 | 286 | 155 | 266 | 8.06e-28 | 116 |
| MS.gene014479.t1 | MTR_4g040020 | 32.544 | 169 | 106 | 3 | 979 | 1144 | 11 | 174 | 1.15e-24 | 103 |
| MS.gene014479.t1 | MTR_5g022270 | 33.918 | 171 | 104 | 5 | 977 | 1144 | 223 | 387 | 4.16e-21 | 99.0 |
| MS.gene014479.t1 | MTR_2g022080 | 33.333 | 171 | 105 | 5 | 977 | 1144 | 223 | 387 | 7.90e-21 | 97.1 |
| MS.gene014479.t1 | MTR_5g076070 | 28.916 | 166 | 115 | 2 | 98 | 260 | 50 | 215 | 8.22e-19 | 88.6 |
| MS.gene014479.t1 | MTR_1g070355 | 31.250 | 176 | 118 | 2 | 101 | 273 | 74 | 249 | 8.53e-19 | 92.0 |
| MS.gene014479.t1 | MTR_6g022080 | 25.294 | 170 | 124 | 1 | 94 | 260 | 78 | 247 | 5.54e-16 | 79.3 |
| MS.gene014479.t1 | MTR_8g035530 | 46.053 | 76 | 39 | 1 | 89 | 164 | 2 | 75 | 1.35e-15 | 73.2 |
| MS.gene014479.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 107 | 266 | 53 | 224 | 2.20e-12 | 70.5 |
| MS.gene014479.t1 | MTR_8g468460 | 41.000 | 100 | 56 | 2 | 305 | 404 | 9 | 105 | 3.15e-12 | 64.7 |
| MS.gene014479.t1 | MTR_0402s0040 | 28.736 | 174 | 119 | 5 | 104 | 274 | 29 | 200 | 2.35e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014479.t1 | AT5G28530 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 5.72e-17 | 86.7 |
| MS.gene014479.t1 | AT5G28530 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 5.81e-17 | 86.7 |
| MS.gene014479.t1 | AT5G28530 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 7.97e-17 | 86.3 |
| MS.gene014479.t1 | AT5G28530 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 7.97e-17 | 86.3 |
| MS.gene014479.t1 | AT5G28530 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 8.23e-17 | 86.3 |
| MS.gene014479.t1 | AT4G38180 | 28.986 | 207 | 133 | 5 | 248 | 449 | 441 | 638 | 2.57e-16 | 84.7 |
| MS.gene014479.t1 | AT4G38180 | 30.403 | 273 | 167 | 11 | 23 | 286 | 4 | 262 | 1.17e-12 | 72.8 |
| MS.gene014479.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 284 | 495 | 452 | 656 | 3.61e-16 | 84.3 |
| MS.gene014479.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 284 | 495 | 452 | 656 | 3.61e-16 | 84.3 |
| MS.gene014479.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 284 | 495 | 452 | 656 | 3.61e-16 | 84.3 |
| MS.gene014479.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 284 | 495 | 452 | 656 | 3.61e-16 | 84.3 |
| MS.gene014479.t1 | AT4G15090 | 30.047 | 213 | 140 | 5 | 284 | 495 | 452 | 656 | 3.61e-16 | 84.3 |
| MS.gene014479.t1 | AT3G22170 | 27.232 | 224 | 152 | 5 | 284 | 504 | 461 | 676 | 5.32e-15 | 80.5 |
| MS.gene014479.t1 | AT3G22170 | 27.232 | 224 | 152 | 5 | 284 | 504 | 461 | 676 | 5.32e-15 | 80.5 |
| MS.gene014479.t1 | AT2G27110 | 26.423 | 246 | 159 | 8 | 246 | 487 | 241 | 468 | 1.55e-14 | 79.0 |
| MS.gene014479.t1 | AT2G27110 | 26.423 | 246 | 159 | 8 | 246 | 487 | 386 | 613 | 1.83e-14 | 79.0 |
| MS.gene014479.t1 | AT2G27110 | 26.423 | 246 | 159 | 8 | 246 | 487 | 386 | 613 | 1.83e-14 | 79.0 |
| MS.gene014479.t1 | AT4G38170 | 26.425 | 193 | 136 | 3 | 256 | 445 | 210 | 399 | 3.81e-14 | 77.4 |
| MS.gene014479.t1 | AT1G76320 | 25.556 | 180 | 124 | 4 | 273 | 448 | 374 | 547 | 8.90e-11 | 66.6 |
| MS.gene014479.t1 | AT1G76320 | 25.556 | 180 | 124 | 4 | 273 | 448 | 374 | 547 | 9.47e-11 | 66.6 |
| MS.gene014479.t1 | AT1G76320 | 25.556 | 180 | 124 | 4 | 273 | 448 | 374 | 547 | 9.47e-11 | 66.6 |
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 3.1:-89567944 | None:intergenic |
| AAAACTGATCCACCATTATT+TGG | 0.189323 | 3.1:-89568181 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 3.1:-89567155 | None:intergenic |
| GGGTTATCGAAAGCGATTTA+TGG | 0.217435 | 3.1:+89573255 | MS.gene014479:CDS |
| TCAAGTTTCAAATCAACTTA+TGG | 0.227227 | 3.1:+89573658 | MS.gene014479:CDS |
| AACCAATATTTAGGATAAAA+TGG | 0.269706 | 3.1:-89573085 | None:intergenic |
| TCACTCAATTTGCTGTAATT+AGG | 0.275503 | 3.1:-89565856 | None:intergenic |
| GAATCTCGCTCGAAATTAAT+TGG | 0.291467 | 3.1:+89572507 | MS.gene014479:CDS |
| ATTGTTTCAGGTAATTGATT+TGG | 0.299049 | 3.1:+89573024 | MS.gene014479:intron |
| AATTGCTCATGTCGAAAGTT+TGG | 0.300899 | 3.1:+89572305 | MS.gene014479:CDS |
| TAGGAATGATTGTGCGATTT+GGG | 0.304560 | 3.1:+89573850 | MS.gene014479:intron |
| AAATGATGATATAAGGGATA+TGG | 0.309095 | 3.1:+89565519 | MS.gene014479:CDS |
| TAATCAAACAAATGAGGATT+TGG | 0.312634 | 3.1:+89571694 | MS.gene014479:CDS |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 3.1:-89568132 | None:intergenic |
| TTTCATGGAAAACTTGTTGA+TGG | 0.314872 | 3.1:+89573612 | MS.gene014479:CDS |
| ATCAAATGGATGATGGAAAA+AGG | 0.314997 | 3.1:+89573875 | MS.gene014479:CDS |
| GTCGGAATAAACCAATATTT+AGG | 0.320561 | 3.1:-89573094 | None:intergenic |
| AAATCCTCATTTGTTTGATT+AGG | 0.320853 | 3.1:-89571692 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 3.1:+89565972 | MS.gene014479:CDS |
| CTTGATACTTGTCTTCCTCT+TGG | 0.328648 | 3.1:-89573492 | None:intergenic |
| CTACTAAAACATTACCTCAT+AGG | 0.337049 | 3.1:-89571741 | None:intergenic |
| ATTGTAACCAAAACACCTTT+AGG | 0.341831 | 3.1:+89572456 | MS.gene014479:CDS |
| TTAGGAATGATTGTGCGATT+TGG | 0.345924 | 3.1:+89573849 | MS.gene014479:intron |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 3.1:-89565966 | None:intergenic |
| GAAGACAAGTATCAAGAAAA+TGG | 0.346177 | 3.1:+89573499 | MS.gene014479:CDS |
| ATGTGACAAATGATGATATA+AGG | 0.351919 | 3.1:+89565512 | MS.gene014479:CDS |
| TTTGTAACCTAAAGGTGTTT+TGG | 0.354281 | 3.1:-89572463 | None:intergenic |
| GGTTATCGAAAGCGATTTAT+GGG | 0.356200 | 3.1:+89573256 | MS.gene014479:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 3.1:+89565767 | MS.gene014479:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 3.1:-89567563 | None:intergenic |
| CTGCACAAAATCAGAGTGTT+AGG | 0.365999 | 3.1:+89572397 | MS.gene014479:CDS |
| TGACATCGGCAGAAAGGAAT+TGG | 0.366356 | 3.1:+89573433 | MS.gene014479:CDS |
| GTTAGCACAAAGGATGAAAA+TGG | 0.367000 | 3.1:+89572197 | MS.gene014479:CDS |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 3.1:+89567307 | MS.gene014479:CDS |
| TTGATACTTGTCTTCCTCTT+GGG | 0.380492 | 3.1:-89573491 | None:intergenic |
| AACAACGATGTTCGTATTGA+TGG | 0.384308 | 3.1:+89565400 | MS.gene014479:CDS |
| CACTATGGGCTGCCAAATAA+TGG | 0.387380 | 3.1:+89568169 | MS.gene014479:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 3.1:+89565918 | MS.gene014479:CDS |
| AAATTCTGTAATAGTGTTAT+CGG | 0.391323 | 3.1:+89571544 | MS.gene014479:CDS |
| GTTTATTCCGACCACATTAT+CGG | 0.391757 | 3.1:+89573105 | MS.gene014479:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | 3.1:+89567521 | MS.gene014479:CDS |
| ACAATCTGTAGATCAAATAA+AGG | 0.392762 | 3.1:+89572245 | MS.gene014479:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 3.1:-89567126 | None:intergenic |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 3.1:-89567435 | None:intergenic |
| TCTAACACTGCTCTGCATAC+TGG | 0.407068 | 3.1:+89568241 | MS.gene014479:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 3.1:+89565999 | MS.gene014479:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 3.1:+89567320 | MS.gene014479:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 3.1:-89567617 | None:intergenic |
| GCACTGGTATTACACGTAAG+AGG | 0.418801 | 3.1:+89567825 | MS.gene014479:CDS |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 3.1:+89567904 | MS.gene014479:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 3.1:+89567560 | MS.gene014479:CDS |
| TGCTGTAATTAGGCATCAAA+TGG | 0.427394 | 3.1:-89565846 | None:intergenic |
| TGAGCAATTTGTGAGCGTTT+TGG | 0.431058 | 3.1:-89572291 | None:intergenic |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 3.1:+89566905 | MS.gene014479:CDS |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 3.1:+89565958 | MS.gene014479:CDS |
| CGATACATGATACCGTTCAT+TGG | 0.450387 | 3.1:+89573396 | MS.gene014479:CDS |
| TTAGCAACTCGTGTTGGCAT+TGG | 0.451963 | 3.1:+89573207 | MS.gene014479:intron |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 3.1:+89567412 | MS.gene014479:CDS |
| TAGGGACACGAGCACCTCAT+TGG | 0.461676 | 3.1:-89571722 | None:intergenic |
| AAATGGACATGACAAGGATA+AGG | 0.461918 | 3.1:+89567385 | MS.gene014479:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 3.1:+89565919 | MS.gene014479:CDS |
| GTGCGATTTGGGTAATCAAA+TGG | 0.465432 | 3.1:+89573861 | MS.gene014479:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 3.1:+89565654 | MS.gene014479:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 3.1:-89565819 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 3.1:-89565714 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 3.1:+89567368 | MS.gene014479:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 3.1:+89565472 | MS.gene014479:CDS |
| TACTAAAACATTACCTCATA+GGG | 0.479347 | 3.1:-89571740 | None:intergenic |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 3.1:+89567554 | MS.gene014479:CDS |
| TGCAGAACAATTAGTTCGAA+TGG | 0.488516 | 3.1:-89565728 | None:intergenic |
| AGGAAACTCTTCTCAACTAA+AGG | 0.490542 | 3.1:+89572417 | MS.gene014479:CDS |
| ATGTGAAACGTGATTCTAAT+GGG | 0.492055 | 3.1:+89565620 | MS.gene014479:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 3.1:+89565990 | MS.gene014479:CDS |
| ATGGATCCCTCTTTCTATGT+GGG | 0.495254 | 3.1:+89573631 | MS.gene014479:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | 3.1:+89567534 | MS.gene014479:CDS |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 3.1:+89567782 | MS.gene014479:CDS |
| TTTGTTGCTCCACGTGGTTA+CGG | 0.500598 | 3.1:+89573703 | MS.gene014479:CDS |
| AATGGACATGACAAGGATAA+GGG | 0.502443 | 3.1:+89567386 | MS.gene014479:CDS |
| AGTGTTAGAATGTGATGAGA+GGG | 0.502952 | 3.1:-89568227 | None:intergenic |
| CCACTGGTTTGAAGTAAGAA+AGG | 0.504797 | 3.1:+89565594 | MS.gene014479:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 3.1:+89568061 | MS.gene014479:CDS |
| GATGGATCCCTCTTTCTATG+TGG | 0.506410 | 3.1:+89573630 | MS.gene014479:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 3.1:+89566021 | MS.gene014479:CDS |
| CTGTAATAGTGTTATCGGAC+AGG | 0.508801 | 3.1:+89571549 | MS.gene014479:CDS |
| GTATCACTATATACATCAAA+AGG | 0.509968 | 3.1:-89565253 | None:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 3.1:+89565952 | MS.gene014479:CDS |
| GCATCCTAATCAAACAAATG+AGG | 0.512763 | 3.1:+89571688 | MS.gene014479:CDS |
| TGTGATGAGAGGGTAGTTGT+CGG | 0.513549 | 3.1:-89568217 | None:intergenic |
| GATGTGAAACGTGATTCTAA+TGG | 0.514927 | 3.1:+89565619 | MS.gene014479:CDS |
| TTGGGTAATCAAATGGATGA+TGG | 0.515751 | 3.1:+89573868 | MS.gene014479:CDS |
| TATTATTTGCAAAATACCAC+TGG | 0.520141 | 3.1:+89565578 | MS.gene014479:CDS |
| TACAAATTAGATACCTCAAA+AGG | 0.521430 | 3.1:+89572480 | MS.gene014479:CDS |
| GTATCTAATTTGTAACCTAA+AGG | 0.521441 | 3.1:-89572471 | None:intergenic |
| CATAATTGACATCGGCAGAA+AGG | 0.522205 | 3.1:+89573427 | MS.gene014479:CDS |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 3.1:-89567043 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 3.1:+89566022 | MS.gene014479:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 3.1:+89567159 | MS.gene014479:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | 3.1:+89567522 | MS.gene014479:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 3.1:-89567249 | None:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | 3.1:-89567539 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 3.1:+89567905 | MS.gene014479:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 3.1:-89568205 | None:intergenic |
| TGTGACAAATGATGATATAA+GGG | 0.541240 | 3.1:+89565513 | MS.gene014479:CDS |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 3.1:+89565670 | MS.gene014479:CDS |
| AAGACAGCCATTGTGCAAGT+TGG | 0.545484 | 3.1:+89568107 | MS.gene014479:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 3.1:-89565809 | None:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 3.1:-89567112 | None:intergenic |
| GATCCCTCTTTCTATGTGGG+TGG | 0.554391 | 3.1:+89573634 | MS.gene014479:CDS |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 3.1:+89567209 | MS.gene014479:CDS |
| TGAACCACCCACATAGAAAG+AGG | 0.556566 | 3.1:-89573638 | None:intergenic |
| GAGTGCTGAGTTTATTTCAA+AGG | 0.557552 | 3.1:+89573282 | MS.gene014479:CDS |
| CACTGGTATTACACGTAAGA+GGG | 0.559146 | 3.1:+89567826 | MS.gene014479:CDS |
| TTACACTAACAGGTGGATGA+AGG | 0.560129 | 3.1:+89573998 | MS.gene014479:intron |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 3.1:+89567581 | MS.gene014479:CDS |
| CAGTGTTAGAATGTGATGAG+AGG | 0.563750 | 3.1:-89568228 | None:intergenic |
| CGAGATGTTGAGAAAAGCAC+TGG | 0.563759 | 3.1:+89567809 | MS.gene014479:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 3.1:-89567219 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 3.1:+89567589 | MS.gene014479:CDS |
| CCACGTGGTTACGGAAGTCA+AGG | 0.569221 | 3.1:+89573712 | MS.gene014479:CDS |
| ATCGAAAGCGATTTATGGGG+GGG | 0.572674 | 3.1:+89573260 | MS.gene014479:CDS |
| TGCCGATGTCAATTATGAGA+AGG | 0.572917 | 3.1:-89573421 | None:intergenic |
| CAATGAACGGTATCATGTAT+CGG | 0.573628 | 3.1:-89573395 | None:intergenic |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 3.1:-89567458 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 3.1:+89565436 | MS.gene014479:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 3.1:-89567104 | None:intergenic |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 3.1:+89567243 | MS.gene014479:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 3.1:+89567582 | MS.gene014479:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 3.1:-89565808 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 3.1:+89565657 | MS.gene014479:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 3.1:+89567244 | MS.gene014479:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 3.1:+89568121 | MS.gene014479:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | 3.1:+89567361 | MS.gene014479:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 3.1:+89565959 | MS.gene014479:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 3.1:+89566879 | MS.gene014479:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | 3.1:+89567362 | MS.gene014479:CDS |
| ATACTCACCGGTGTATAACT+CGG | 0.588936 | 3.1:-89568277 | None:intergenic |
| TTAATAATTTACCGATAATG+TGG | 0.589365 | 3.1:-89573116 | None:intergenic |
| ATGAGAGGGTAGTTGTCGGA+GGG | 0.591320 | 3.1:-89568213 | None:intergenic |
| CATGTCCATTTCCCTCATGA+CGG | 0.591948 | 3.1:-89567373 | None:intergenic |
| ATTTATTTAGCAACTCGTGT+TGG | 0.592550 | 3.1:+89573201 | MS.gene014479:intron |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 3.1:+89566004 | MS.gene014479:CDS |
| TTATCGAAAGCGATTTATGG+GGG | 0.592691 | 3.1:+89573258 | MS.gene014479:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 3.1:+89568127 | MS.gene014479:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 3.1:-89567111 | None:intergenic |
| GCTACTTTGAGTTATTTCCA+AGG | 0.596592 | 3.1:+89566054 | MS.gene014479:CDS |
| AAGGATGAAAATGGTAGAGA+CGG | 0.599188 | 3.1:+89572206 | MS.gene014479:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 3.1:+89568122 | MS.gene014479:CDS |
| TAATTTACCGATAATGTGGT+CGG | 0.599623 | 3.1:-89573112 | None:intergenic |
| ATTAGATACCTCAAAAGGCA+AGG | 0.605997 | 3.1:+89572485 | MS.gene014479:CDS |
| CCTTTCTTACTTCAAACCAG+TGG | 0.606619 | 3.1:-89565594 | None:intergenic |
| TGGTGGAGATGAAACGGAAT+CGG | 0.606779 | 3.1:-89571474 | None:intergenic |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 3.1:-89566843 | None:intergenic |
| ATATAGTGATACAGATGAGG+TGG | 0.607738 | 3.1:+89565264 | MS.gene014479:CDS |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 3.1:+89566023 | MS.gene014479:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 3.1:+89567321 | MS.gene014479:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 3.1:+89565310 | MS.gene014479:CDS |
| AATTGGAGCTAATATTCCAA+AGG | 0.615507 | 3.1:+89572524 | MS.gene014479:CDS |
| TTAGAACAACATCTTGTCCT+CGG | 0.616961 | 3.1:-89567506 | None:intergenic |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 3.1:+89565880 | MS.gene014479:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 3.1:+89565315 | MS.gene014479:CDS |
| GATGAGAGGGTAGTTGTCGG+AGG | 0.619255 | 3.1:-89568214 | None:intergenic |
| TATCGAAAGCGATTTATGGG+GGG | 0.620517 | 3.1:+89573259 | MS.gene014479:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 3.1:+89567458 | MS.gene014479:CDS |
| TATGGTTCCAACTTGCACAA+TGG | 0.627946 | 3.1:-89568114 | None:intergenic |
| GAACGAGATGAAGATGTGGA+TGG | 0.628845 | 3.1:+89566960 | MS.gene014479:CDS |
| TTCCTTCTCATAATTGACAT+CGG | 0.629925 | 3.1:+89573419 | MS.gene014479:CDS |
| GAGGTGCTCGTGTCCCTATG+AGG | 0.630432 | 3.1:+89571727 | MS.gene014479:CDS |
| AGGATTTGGAATTTCCAATG+AGG | 0.632110 | 3.1:+89571708 | MS.gene014479:CDS |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 3.1:+89566005 | MS.gene014479:CDS |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 3.1:-89565447 | None:intergenic |
| TTTGGTTACAATAATCGGAG+TGG | 0.642068 | 3.1:-89572445 | None:intergenic |
| GTTATCGAAAGCGATTTATG+GGG | 0.643499 | 3.1:+89573257 | MS.gene014479:CDS |
| TATGGGCTGCCAAATAATGG+TGG | 0.644398 | 3.1:+89568172 | MS.gene014479:CDS |
| TATGAGAAGGAACCAATGAA+CGG | 0.646603 | 3.1:-89573408 | None:intergenic |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 3.1:+89565454 | MS.gene014479:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 3.1:+89565895 | MS.gene014479:CDS |
| TTTAAGTTTGTTGCTCCACG+TGG | 0.650344 | 3.1:+89573697 | MS.gene014479:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 3.1:-89565832 | None:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 3.1:+89567242 | MS.gene014479:CDS |
| GTTCGTCAGCTCTTCCCAAG+AGG | 0.652918 | 3.1:+89573477 | MS.gene014479:CDS |
| TGAGGGAAATGGACATGACA+AGG | 0.654599 | 3.1:+89567379 | MS.gene014479:CDS |
| CATTGAACGAGATGAAGATG+TGG | 0.655902 | 3.1:+89566956 | MS.gene014479:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 3.1:+89565455 | MS.gene014479:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 3.1:+89567785 | MS.gene014479:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.658848 | 3.1:+89565417 | MS.gene014479:CDS |
| GAACCACCCACATAGAAAGA+GGG | 0.662397 | 3.1:-89573637 | None:intergenic |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 3.1:+89565311 | MS.gene014479:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 3.1:+89567583 | MS.gene014479:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 3.1:+89567124 | MS.gene014479:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 3.1:+89567468 | MS.gene014479:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 3.1:+89565658 | MS.gene014479:CDS |
| CGTATTGATGGAGATGCAGA+CGG | 0.679775 | 3.1:+89565412 | MS.gene014479:CDS |
| CAATGTTCCGAGTTATACAC+CGG | 0.682160 | 3.1:+89568270 | MS.gene014479:CDS |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 3.1:-89567781 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 3.1:+89567310 | MS.gene014479:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 3.1:+89567445 | MS.gene014479:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 3.1:+89565430 | MS.gene014479:CDS |
| CCTTGACTTCCGTAACCACG+TGG | 0.696038 | 3.1:-89573712 | None:intergenic |
| TGTATATAGTGATACAGATG+AGG | 0.703043 | 3.1:+89565261 | MS.gene014479:CDS |
| CACGTGGTTACGGAAGTCAA+GGG | 0.703622 | 3.1:+89573713 | MS.gene014479:CDS |
| TATGAGAAAGAACATAGACA+TGG | 0.713561 | 3.1:+89572366 | MS.gene014479:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.723695 | 3.1:-89567273 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 3.1:+89565312 | MS.gene014479:CDS |
| TGTAGACGCTTTGAACGCAG+AGG | 0.729954 | 3.1:+89567077 | MS.gene014479:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 3.1:-89566752 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 3.1:+89565534 | MS.gene014479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 89565226 | 89574063 | 89565226 | ID=MS.gene014479 |
| chr3.1 | mRNA | 89565226 | 89574063 | 89565226 | ID=MS.gene014479.t1;Parent=MS.gene014479 |
| chr3.1 | exon | 89565226 | 89566075 | 89565226 | ID=MS.gene014479.t1.exon1;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89565226 | 89566075 | 89565226 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89566712 | 89567652 | 89566712 | ID=MS.gene014479.t1.exon2;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89566712 | 89567652 | 89566712 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89567749 | 89567970 | 89567749 | ID=MS.gene014479.t1.exon3;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89567749 | 89567970 | 89567749 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89568061 | 89568291 | 89568061 | ID=MS.gene014479.t1.exon4;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89568061 | 89568291 | 89568061 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89571401 | 89571570 | 89571401 | ID=MS.gene014479.t1.exon5;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89571401 | 89571570 | 89571401 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89571649 | 89571748 | 89571649 | ID=MS.gene014479.t1.exon6;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89571649 | 89571748 | 89571649 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89572195 | 89572545 | 89572195 | ID=MS.gene014479.t1.exon7;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89572195 | 89572545 | 89572195 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89573034 | 89573126 | 89573034 | ID=MS.gene014479.t1.exon8;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89573034 | 89573126 | 89573034 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89573211 | 89573303 | 89573211 | ID=MS.gene014479.t1.exon9;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89573211 | 89573303 | 89573211 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89573386 | 89573520 | 89573386 | ID=MS.gene014479.t1.exon10;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89573386 | 89573520 | 89573386 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89573607 | 89573743 | 89573607 | ID=MS.gene014479.t1.exon11;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89573607 | 89573743 | 89573607 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89573853 | 89573919 | 89573853 | ID=MS.gene014479.t1.exon12;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89573853 | 89573919 | 89573853 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| chr3.1 | exon | 89574010 | 89574063 | 89574010 | ID=MS.gene014479.t1.exon13;Parent=MS.gene014479.t1 |
| chr3.1 | CDS | 89574010 | 89574063 | 89574010 | ID=cds.MS.gene014479.t1;Parent=MS.gene014479.t1 |
| Gene Sequence |
| Protein sequence |