AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014481


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014481.t1 MTR_3g112300 91.261 595 40 4 1 591 1 587 0.0 1111
MS.gene014481.t1 MTR_3g112300 92.593 432 32 0 1 432 1 432 0.0 840
MS.gene014481.t1 MTR_3g112300 91.954 87 4 2 508 591 431 517 5.18e-42 159
MS.gene014481.t1 MTR_3g112300 92.347 392 30 0 1 392 1 392 0.0 758
MS.gene014481.t1 MTR_3g112300 91.914 371 30 0 1 371 1 371 0.0 715
MS.gene014481.t1 MTR_1g023050 60.372 646 182 19 1 591 1 627 0.0 690
MS.gene014481.t1 MTR_4g051532 56.429 280 109 6 162 434 217 490 1.22e-85 281
MS.gene014481.t1 MTR_1g057790 55.197 279 110 5 162 430 161 434 2.54e-84 276
MS.gene014481.t1 MTR_8g078480 51.095 274 117 5 158 420 384 651 3.66e-82 275
MS.gene014481.t1 MTR_7g106320 55.094 265 109 4 163 420 172 433 2.72e-81 268
MS.gene014481.t1 MTR_5g018860 50.000 272 117 4 161 421 337 600 9.41e-81 269
MS.gene014481.t1 MTR_8g098815 47.163 282 123 6 141 408 163 432 9.63e-75 250
MS.gene014481.t1 MTR_3g112290 46.075 293 124 8 156 431 159 434 8.57e-72 238
MS.gene014481.t1 MTR_7g065050 37.278 338 173 9 158 489 133 437 4.05e-60 208
MS.gene014481.t1 MTR_4g019450 40.278 288 145 5 158 441 192 456 3.44e-58 205
MS.gene014481.t1 MTR_2g095050 40.000 310 137 7 158 441 244 530 5.00e-58 205
MS.gene014481.t1 MTR_1g016490 39.464 261 146 6 159 414 240 493 1.94e-43 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014481.t1 AT1G75410 47.922 409 179 8 32 430 47 431 6.77e-108 334
MS.gene014481.t1 AT1G75410 47.922 409 179 8 32 430 47 431 6.77e-108 334
MS.gene014481.t1 AT1G19700 48.921 417 164 14 34 428 46 435 1.51e-107 334
MS.gene014481.t1 AT1G19700 48.921 417 164 14 34 428 46 435 1.51e-107 334
MS.gene014481.t1 AT1G19700 48.921 417 164 14 34 428 46 435 1.51e-107 334
MS.gene014481.t1 AT1G19700 48.921 417 164 14 34 428 46 435 1.51e-107 334
MS.gene014481.t1 AT1G19700 48.921 417 164 14 34 428 46 435 1.51e-107 334
MS.gene014481.t1 AT2G16400 44.372 462 174 13 141 591 93 482 2.18e-106 329
MS.gene014481.t1 AT4G34610 45.125 441 177 14 165 591 143 532 1.50e-101 318
MS.gene014481.t1 AT4G34610 45.125 441 177 14 165 591 143 532 1.50e-101 318
MS.gene014481.t1 AT4G34610 45.125 441 177 14 165 591 143 532 1.50e-101 318
MS.gene014481.t1 AT4G34610 45.125 441 177 14 165 591 143 532 1.50e-101 318
MS.gene014481.t1 AT1G75410 45.822 371 167 8 32 392 47 393 7.17e-87 276
MS.gene014481.t1 AT2G23760 53.612 263 98 6 165 413 240 492 1.65e-79 263
MS.gene014481.t1 AT2G23760 53.612 263 98 6 165 413 240 492 1.65e-79 263
MS.gene014481.t1 AT2G23760 53.612 263 98 6 165 413 240 492 1.65e-79 263
MS.gene014481.t1 AT2G35940 49.811 265 113 5 158 406 186 446 1.02e-76 257
MS.gene014481.t1 AT2G35940 49.811 265 113 5 158 406 186 446 1.02e-76 257
MS.gene014481.t1 AT2G35940 49.811 265 113 5 158 406 186 446 1.02e-76 257
MS.gene014481.t1 AT4G36870 50.562 267 109 6 161 414 311 567 3.46e-76 257
MS.gene014481.t1 AT4G36870 50.562 267 109 6 161 414 311 567 3.46e-76 257
MS.gene014481.t1 AT2G23760 44.762 315 98 7 165 413 240 544 2.19e-69 237
MS.gene014481.t1 AT2G27220 47.177 248 100 4 168 415 82 298 1.50e-66 223
MS.gene014481.t1 AT2G27220 47.177 248 100 4 168 415 82 298 1.50e-66 223
MS.gene014481.t1 AT2G27220 43.985 266 100 5 168 415 82 316 1.59e-62 213
MS.gene014481.t1 AT1G75430 41.304 276 127 8 163 419 17 276 2.67e-61 205
MS.gene014481.t1 AT5G41410 39.873 316 138 7 240 538 273 553 4.99e-61 213
MS.gene014481.t1 AT4G36870 47.967 246 105 6 161 393 311 546 1.30e-60 211
MS.gene014481.t1 AT4G36870 47.541 244 105 6 161 391 311 544 1.09e-59 208
MS.gene014481.t1 AT5G02030 42.701 274 120 6 158 415 166 418 4.31e-55 196
MS.gene014481.t1 AT2G27990 53.107 177 74 3 243 415 323 494 1.82e-50 184
MS.gene014481.t1 AT4G32980 38.433 268 135 6 156 414 195 441 2.67e-46 170
MS.gene014481.t1 AT4G32980 38.433 268 135 6 156 414 195 441 2.67e-46 170
MS.gene014481.t1 AT1G75430 34.211 228 115 8 163 371 17 228 1.72e-29 118
MS.gene014481.t1 AT2G27990 44.361 133 65 3 243 371 323 450 8.50e-25 108

Find 117 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTTGGACATGGTTGC+TGG 0.171008 3.1:-89519980 MS.gene014481:CDS
ATCCAACAAGTTCTGTCTTT+TGG 0.205956 3.1:+89520355 None:intergenic
TTAATGCGCGTGTGCGTCTT+TGG 0.241731 3.1:-89519332 MS.gene014481:CDS
GACTATCATTTCACAGATTC+AGG 0.242730 3.1:-89518823 MS.gene014481:CDS
GCAAATTGTGGTGTCATCTT+TGG 0.309506 3.1:-89519993 MS.gene014481:CDS
TCATGAGATTAATAATAAAT+TGG 0.315537 3.1:-89519208 MS.gene014481:CDS
CCCAACCAAGCATTCTCTTC+AGG 0.317247 3.1:-89521052 MS.gene014481:CDS
CATCTTTGGACATGGTTGCT+GGG 0.322770 3.1:-89519979 MS.gene014481:CDS
CCTTAAGATATTGAGAGTTT+AGG 0.323728 3.1:+89520570 None:intergenic
CCTAAACTCTCAATATCTTA+AGG 0.324664 3.1:-89520570 MS.gene014481:CDS
CTCCAAGGTAAAAGAGATTA+TGG 0.332690 3.1:-89519231 MS.gene014481:CDS
TTTCCATTCCACGTTGCTTT+CGG 0.349688 3.1:+89520513 None:intergenic
CACATATGATTTAATAGAGT+TGG 0.365395 3.1:-89519010 MS.gene014481:CDS
GAAATATACAAAGAAGAGTT+TGG 0.368762 3.1:-89519294 MS.gene014481:CDS
CGCAATGCAAGTGTAGTATA+TGG 0.380736 3.1:+89519941 None:intergenic
AAGTGATTCAAAGGAACCTT+GGG 0.404482 3.1:-89519865 MS.gene014481:CDS
ATTCTCTTCAGGGTCCTATA+TGG 0.406017 3.1:-89521041 MS.gene014481:CDS
CAGTCTATGCAAATAACTTC+GGG 0.408568 3.1:-89520425 MS.gene014481:CDS
GTTACGAAAACGCTCCCTTT+TGG 0.410728 3.1:+89520646 None:intergenic
TATGGTATCAGGTGGCAAAT+TGG 0.411576 3.1:-89519359 MS.gene014481:intron
AATGTGATAGATTGTGGAAA+TGG 0.412066 3.1:-89519102 MS.gene014481:CDS
TTGAGAGTTTAGGAAAATGT+TGG 0.412411 3.1:+89520580 None:intergenic
CGAAACCGGTGTCATTATAC+TGG 0.413951 3.1:+89520783 None:intergenic
GGAAAGCAACAACACATGTT+TGG 0.421673 3.1:-89518802 MS.gene014481:CDS
TCATTATACTGGTATTGAAA+TGG 0.422426 3.1:+89520794 None:intergenic
CTGTTTCAATACTTCGTGCT+TGG 0.423440 3.1:-89519721 MS.gene014481:CDS
CCAACCAAGCATTCTCTTCA+GGG 0.428447 3.1:-89521051 MS.gene014481:CDS
TTGTATATTTCTTCAACCAT+TGG 0.430158 3.1:+89519306 None:intergenic
AACTGGTTTGACAAGGAATC+AGG 0.432153 3.1:-89519469 MS.gene014481:intron
TCCTTTGAATCACTTGAACT+TGG 0.447044 3.1:+89519873 None:intergenic
ATTCATCAGCGATACGAAAC+CGG 0.447145 3.1:+89520769 None:intergenic
ATAATGCTAGCTAGGCAAAC+TGG 0.452403 3.1:-89519486 MS.gene014481:CDS
CCCTGAAGAGAATGCTTGGT+TGG 0.454991 3.1:+89521051 None:intergenic
TTAGATATAGTAGTTCCCTT+TGG 0.461116 3.1:+89520734 None:intergenic
ACATATGATTTAATAGAGTT+GGG 0.462874 3.1:-89519009 MS.gene014481:CDS
CAAAAGGCACTTCAGCATCT+TGG 0.463824 3.1:-89519791 MS.gene014481:CDS
GGAGGGACAGATGCATTAGA+AGG 0.464657 3.1:+89520815 None:intergenic
TGCATGGAAAGCATGTCTTC+CGG 0.466072 3.1:-89520686 MS.gene014481:CDS
ATCTTTGGACATGGTTGCTG+GGG 0.467421 3.1:-89519978 MS.gene014481:CDS
CAGAGAAAATAATGCTAGCT+AGG 0.467771 3.1:-89519494 MS.gene014481:CDS
ACCAAGTTTAACACACCTAT+AGG 0.472281 3.1:-89520950 MS.gene014481:CDS
TACACGTTCTCTCGTGGAAG+AGG 0.476889 3.1:+89519131 None:intergenic
CGAGGTGAACATATCCATAT+AGG 0.479681 3.1:+89521027 None:intergenic
ATAGTCACTGTGTCGCCTAT+AGG 0.482382 3.1:+89520935 None:intergenic
CAAGTGATTCAAAGGAACCT+TGG 0.483068 3.1:-89519866 MS.gene014481:CDS
CTCCTCAGATCACTGCCTGC+AGG 0.488491 3.1:-89520618 MS.gene014481:CDS
GCCTATAGGTGTGTTAAACT+TGG 0.490982 3.1:+89520949 None:intergenic
GGTAATGTCATGAAATCCTC+CGG 0.496563 3.1:+89520667 None:intergenic
GGATATCTCACAAGAAGGAT+TGG 0.496624 3.1:+89520382 None:intergenic
TCAGTCTATGCAAATAACTT+CGG 0.500629 3.1:-89520426 MS.gene014481:CDS
TCACAATGTCTCTCTTGCAT+TGG 0.504072 3.1:-89518956 MS.gene014481:CDS
GGATTGGAATTAGAATCATT+AGG 0.508994 3.1:+89520398 None:intergenic
AGCATTGGAATGCTCATCAA+TGG 0.509427 3.1:+89520907 None:intergenic
CCAACAGCTTAGGCAACAAA+AGG 0.510811 3.1:-89519807 MS.gene014481:CDS
CGAGACTAAGAGATAACTCT+TGG 0.512889 3.1:+89520849 None:intergenic
ACACCACAATTTGCATTCGA+TGG 0.516116 3.1:+89520002 None:intergenic
TACATGAGAGCTGTAAGCAT+TGG 0.517302 3.1:+89520892 None:intergenic
CCTGAAGAGAATGCTTGGTT+GGG 0.517326 3.1:+89521052 None:intergenic
GATTTCATGACATTACCAAA+AGG 0.521517 3.1:-89520661 MS.gene014481:CDS
TGTCCGAAAGCAACGTGGAA+TGG 0.521567 3.1:-89520516 MS.gene014481:CDS
TCATCTGAAAATACACTCCA+AGG 0.523657 3.1:-89519246 MS.gene014481:CDS
CAAGAGTTATCTCTTAGTCT+CGG 0.528666 3.1:-89520848 MS.gene014481:CDS
AGCCAAAAGACAGAACTTGT+TGG 0.529485 3.1:-89520357 MS.gene014481:CDS
TAAGCTGTTGGTCCACGTAC+CGG 0.539458 3.1:+89519819 None:intergenic
AAGAGTTATCTCTTAGTCTC+GGG 0.540585 3.1:-89520847 MS.gene014481:CDS
AGGACCCTGAAGAGAATGCT+TGG 0.541911 3.1:+89521047 None:intergenic
ATTTCATGACATTACCAAAA+GGG 0.544159 3.1:-89520660 MS.gene014481:CDS
GTATTCCTTCTTGTTCCCCA+AGG 0.544341 3.1:+89519849 None:intergenic
TCTTTGGACATGGTTGCTGG+GGG 0.546073 3.1:-89519977 MS.gene014481:CDS
ACCAAGTTCAAGTGATTCAA+AGG 0.549397 3.1:-89519874 MS.gene014481:CDS
GGTACGTGGACCAACAGCTT+AGG 0.555219 3.1:-89519817 MS.gene014481:CDS
GAATGCTTGTCGTCTTCCAA+AGG 0.555351 3.1:-89520750 MS.gene014481:CDS
GCTGAGGATATCTCACAAGA+AGG 0.555753 3.1:+89520377 None:intergenic
TTGGTGTTATGCGGCAAGCA+TGG 0.558919 3.1:-89519772 MS.gene014481:CDS
CACTGCCTGCAGGATTCACA+AGG 0.565086 3.1:-89520608 MS.gene014481:CDS
TTCAGCATCTTGGTGTTATG+CGG 0.567244 3.1:-89519781 MS.gene014481:CDS
CAACTCTATTAAATCATATG+TGG 0.568553 3.1:+89519011 None:intergenic
TTATACTGGTATTGAAATGG+AGG 0.572976 3.1:+89520797 None:intergenic
AAGAAGGAATACCTCGTCTC+CGG 0.574564 3.1:-89519838 MS.gene014481:CDS
GATAATCCCAACGATAGTGA+TGG 0.576493 3.1:-89520461 MS.gene014481:CDS
GGCAGTGATCTGAGGAGTGA+GGG 0.576558 3.1:+89520624 None:intergenic
AGGAACCTTGGGGAACAAGA+AGG 0.579072 3.1:-89519854 MS.gene014481:CDS
AATACCTCGTCTCCGGTACG+TGG 0.579283 3.1:-89519831 MS.gene014481:CDS
ACATAATAATAATCAGACAT+TGG 0.582601 3.1:-89518875 MS.gene014481:CDS
AATGCTTGTCGTCTTCCAAA+GGG 0.582756 3.1:-89520749 MS.gene014481:CDS
ATTGAAAAGTGTCGAATGCA+TGG 0.591816 3.1:-89520702 MS.gene014481:CDS
TTGAGAAACTGTGAAAGCGA+TGG 0.592333 3.1:-89518931 MS.gene014481:CDS
GGTAACTTTACAACTGTGGA+TGG 0.593227 3.1:-89518988 MS.gene014481:CDS
GTCTATGCAAATAACTTCGG+GGG 0.594987 3.1:-89520423 MS.gene014481:CDS
CAATACCAGTATAATGACAC+CGG 0.603044 3.1:-89520788 MS.gene014481:CDS
TCAATATCTTAAGGCTACAC+AGG 0.606571 3.1:-89520561 MS.gene014481:CDS
GATTATCCAATCCAATGTTG+CGG 0.607575 3.1:+89520477 None:intergenic
TTTACAACTGTGGATGGTGG+TGG 0.611372 3.1:-89518982 MS.gene014481:CDS
GAAAATTGCATGGTAACCAA+AGG 0.613715 3.1:-89519080 MS.gene014481:CDS
GGTTGATACCAGTTACCCCA+AGG 0.615136 3.1:-89519520 MS.gene014481:intron
AACTTTACAACTGTGGATGG+TGG 0.616544 3.1:-89518985 MS.gene014481:CDS
CTAGGCAAACTGGTTTGACA+AGG 0.616619 3.1:-89519476 MS.gene014481:CDS
GATTCATTGTAGTAATTGTG+AGG 0.618741 3.1:+89520992 None:intergenic
AGGCAGTGATCTGAGGAGTG+AGG 0.618773 3.1:+89520623 None:intergenic
TGGTCCACGTACCGGAGACG+AGG 0.620141 3.1:+89519827 None:intergenic
ATCCTGCAGGCAGTGATCTG+AGG 0.622811 3.1:+89520616 None:intergenic
TGTGCGTCTTTGGAAACCAA+TGG 0.624209 3.1:-89519322 MS.gene014481:CDS
TAGTAATTGTGAGGTAACAA+AGG 0.627033 3.1:+89521001 None:intergenic
TGTGGTGTCATCTTTGGACA+TGG 0.628842 3.1:-89519987 MS.gene014481:CDS
GTTGGGTAACTTTACAACTG+TGG 0.629995 3.1:-89518992 MS.gene014481:CDS
TATGGTTACCTCATCCAACA+TGG 0.631595 3.1:+89520313 None:intergenic
TGTGGAAATGGAAAATTGCA+TGG 0.634656 3.1:-89519090 MS.gene014481:CDS
ATGCAAGAGAGACATTGTGA+TGG 0.664466 3.1:+89518959 None:intergenic
TATACTGGTATTGAAATGGA+GGG 0.666797 3.1:+89520798 None:intergenic
GTGAGGTAACAAAGGACTCG+AGG 0.675570 3.1:+89521009 None:intergenic
CTGCCATCGAATGCAAATTG+TGG 0.686632 3.1:-89520005 MS.gene014481:CDS
ATGGAAAGCATGTCTTCCGG+AGG 0.687343 3.1:-89520683 MS.gene014481:CDS
TCTATGCAAATAACTTCGGG+GGG 0.707179 3.1:-89520422 MS.gene014481:CDS
GTTAATGTCCGAAAGCAACG+TGG 0.708048 3.1:-89520521 MS.gene014481:CDS
AGTCTATGCAAATAACTTCG+GGG 0.713697 3.1:-89520424 MS.gene014481:CDS
AGTGATTCAAAGGAACCTTG+GGG 0.732244 3.1:-89519864 MS.gene014481:CDS
CAAGCATGGAGACCTCAGAG+AGG 0.733220 3.1:-89519758 MS.gene014481:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAATTAAATCCATAAA+AGG + chr3.1:89519559-89519578 None:intergenic 15.0%
!! TATTATCATATAACTTCTAT+TGG - chr3.1:89519641-89519660 MS.gene014481:intron 15.0%
!! TCATGAGATTAATAATAAAT+TGG - chr3.1:89520618-89520637 MS.gene014481:CDS 15.0%
!!! ATATTTTCAATTAGTTGTAA+TGG - chr3.1:89520202-89520221 MS.gene014481:intron 15.0%
!!! ATTATTATGTCTTTTATGAA+TGG + chr3.1:89520941-89520960 None:intergenic 15.0%
!! ACATAATAATAATCAGACAT+TGG - chr3.1:89520951-89520970 MS.gene014481:CDS 20.0%
!! ACATATGATTTAATAGAGTT+GGG - chr3.1:89520817-89520836 MS.gene014481:CDS 20.0%
!! AGTGTAAAAACTTTATCATA+AGG - chr3.1:89519595-89519614 MS.gene014481:intron 20.0%
!! GAAAATATAAAATTGAGTGA+AGG + chr3.1:89520190-89520209 None:intergenic 20.0%
!! GTATTATAAAGTAACACATA+CGG + chr3.1:89520152-89520171 None:intergenic 20.0%
!! TCTTTAATGAGACATTTATA+TGG - chr3.1:89520444-89520463 MS.gene014481:CDS 20.0%
!! TTCAACTTTCATTTCATAAT+TGG - chr3.1:89520285-89520304 MS.gene014481:intron 20.0%
! AATGAGACATTTATATGGTA+TGG - chr3.1:89520449-89520468 MS.gene014481:CDS 25.0%
! AGATGCAATGCTAAATAATA+TGG + chr3.1:89519534-89519553 None:intergenic 25.0%
! ATTTCATGACATTACCAAAA+GGG - chr3.1:89519166-89519185 MS.gene014481:CDS 25.0%
! CAACTCTATTAAATCATATG+TGG + chr3.1:89520818-89520837 None:intergenic 25.0%
! CACATATGATTTAATAGAGT+TGG - chr3.1:89520816-89520835 MS.gene014481:CDS 25.0%
! GAAAAAAATGTGATAGATTG+TGG - chr3.1:89520718-89520737 MS.gene014481:CDS 25.0%
! GAAATATACAAAGAAGAGTT+TGG - chr3.1:89520532-89520551 MS.gene014481:CDS 25.0%
! TTGTATATTTCTTCAACCAT+TGG + chr3.1:89520523-89520542 None:intergenic 25.0%
!! ATTATTTTCTCTGAATCCTT+GGG + chr3.1:89520325-89520344 None:intergenic 25.0%
!! TCATTATACTGGTATTGAAA+TGG + chr3.1:89519035-89519054 None:intergenic 25.0%
!!! AAGTATTGAAACAGAGTTTT+CGG + chr3.1:89520099-89520118 None:intergenic 25.0%
AATGTGATAGATTGTGGAAA+TGG - chr3.1:89520724-89520743 MS.gene014481:CDS 30.0%
AGTGAAGGATTAGAATTTAG+AGG + chr3.1:89520175-89520194 None:intergenic 30.0%
CATTTATATGGTATGGTATC+AGG - chr3.1:89520456-89520475 MS.gene014481:CDS 30.0%
CCTAAACTCTCAATATCTTA+AGG - chr3.1:89519256-89519275 MS.gene014481:CDS 30.0%
CCTTAAGATATTGAGAGTTT+AGG + chr3.1:89519259-89519278 None:intergenic 30.0%
GAATAATTGTCACACACTAT+CGG + chr3.1:89519691-89519710 None:intergenic 30.0%
GATTCATTGTAGTAATTGTG+AGG + chr3.1:89518837-89518856 None:intergenic 30.0%
GATTTCATGACATTACCAAA+AGG - chr3.1:89519165-89519184 MS.gene014481:CDS 30.0%
GGATTGGAATTAGAATCATT+AGG + chr3.1:89519431-89519450 None:intergenic 30.0%
GTGAAGGATTAGAATTTAGA+GGG + chr3.1:89520174-89520193 None:intergenic 30.0%
TAGTAATTGTGAGGTAACAA+AGG + chr3.1:89518828-89518847 None:intergenic 30.0%
TCAGTCTATGCAAATAACTT+CGG - chr3.1:89519400-89519419 MS.gene014481:intron 30.0%
TTAGATATAGTAGTTCCCTT+TGG + chr3.1:89519095-89519114 None:intergenic 30.0%
TTGAGAGTTTAGGAAAATGT+TGG + chr3.1:89519249-89519268 None:intergenic 30.0%
! AAATTTTCCATCACTATCGT+TGG + chr3.1:89519375-89519394 None:intergenic 30.0%
! AATTTTCCATCACTATCGTT+GGG + chr3.1:89519374-89519393 None:intergenic 30.0%
! CATTATTTTCTCTGAATCCT+TGG + chr3.1:89520326-89520345 None:intergenic 30.0%
! CTCTTCTTTTATTCCATAGT+TGG - chr3.1:89519710-89519729 MS.gene014481:CDS 30.0%
! TATACTGGTATTGAAATGGA+GGG + chr3.1:89519031-89519050 None:intergenic 30.0%
! TTATACTGGTATTGAAATGG+AGG + chr3.1:89519032-89519051 None:intergenic 30.0%
! TTATTTTCTCTGAATCCTTG+GGG + chr3.1:89520324-89520343 None:intergenic 30.0%
!! AGTATTGAAACAGAGTTTTC+GGG + chr3.1:89520098-89520117 None:intergenic 30.0%
AAAAATCCGCAACATTGGAT+TGG - chr3.1:89519343-89519362 MS.gene014481:CDS 35.0%
AAGAGTTATCTCTTAGTCTC+GGG - chr3.1:89518979-89518998 MS.gene014481:CDS 35.0%
AAGTGATTCAAAGGAACCTT+GGG - chr3.1:89519961-89519980 MS.gene014481:CDS 35.0%
ACCAAGTTCAAGTGATTCAA+AGG - chr3.1:89519952-89519971 MS.gene014481:CDS 35.0%
ACCAAGTTTAACACACCTAT+AGG - chr3.1:89518876-89518895 MS.gene014481:CDS 35.0%
AGTCTATGCAAATAACTTCG+GGG - chr3.1:89519402-89519421 MS.gene014481:intron 35.0%
CAAAGGCTCAGCATAAAAAA+TGG - chr3.1:89520763-89520782 MS.gene014481:CDS 35.0%
CAAGAAAAAATCCGCAACAT+TGG - chr3.1:89519338-89519357 MS.gene014481:CDS 35.0%
CAAGAGTTATCTCTTAGTCT+CGG - chr3.1:89518978-89518997 MS.gene014481:CDS 35.0%
CAATACCAGTATAATGACAC+CGG - chr3.1:89519038-89519057 MS.gene014481:CDS 35.0%
CAGAGAAAATAATGCTAGCT+AGG - chr3.1:89520332-89520351 MS.gene014481:CDS 35.0%
CAGTCTATGCAAATAACTTC+GGG - chr3.1:89519401-89519420 MS.gene014481:intron 35.0%
CTCCAAGGTAAAAGAGATTA+TGG - chr3.1:89520595-89520614 MS.gene014481:CDS 35.0%
CTGTAATCCTTTCTTTGTAC+TGG - chr3.1:89519769-89519788 MS.gene014481:CDS 35.0%
GAAAATTGCATGGTAACCAA+AGG - chr3.1:89520746-89520765 MS.gene014481:CDS 35.0%
GACTATCATTTCACAGATTC+AGG - chr3.1:89521003-89521022 MS.gene014481:CDS 35.0%
GATTATCCAATCCAATGTTG+CGG + chr3.1:89519352-89519371 None:intergenic 35.0%
GCTGTCATAATAACCAACTA+TGG + chr3.1:89519726-89519745 None:intergenic 35.0%
TCAATATCTTAAGGCTACAC+AGG - chr3.1:89519265-89519284 MS.gene014481:CDS 35.0%
TCATCTGAAAATACACTCCA+AGG - chr3.1:89520580-89520599 MS.gene014481:CDS 35.0%
TCCTTTGAATCACTTGAACT+TGG + chr3.1:89519956-89519975 None:intergenic 35.0%
TGTGGAAATGGAAAATTGCA+TGG - chr3.1:89520736-89520755 MS.gene014481:CDS 35.0%
TTATATGGTATGGTATCAGG+TGG - chr3.1:89520459-89520478 MS.gene014481:CDS 35.0%
TTATTATGACAGCGATGGTT+TGG - chr3.1:89519733-89519752 MS.gene014481:CDS 35.0%
! ATCCAACAAGTTCTGTCTTT+TGG + chr3.1:89519474-89519493 None:intergenic 35.0%
! GACCATAATCTCTTTTACCT+TGG + chr3.1:89520600-89520619 None:intergenic 35.0%
! GCATTGCATCTTTCCTTTTA+TGG - chr3.1:89519543-89519562 MS.gene014481:intron 35.0%
!! ATTGAAAAGTGTCGAATGCA+TGG - chr3.1:89519124-89519143 MS.gene014481:CDS 35.0%
!!! CATTTTTTATGCTGAGCCTT+TGG + chr3.1:89520765-89520784 None:intergenic 35.0%
AAAAACCTTGTGAATCCTGC+AGG + chr3.1:89519226-89519245 None:intergenic 40.0%
AACTTTACAACTGTGGATGG+TGG - chr3.1:89520841-89520860 MS.gene014481:CDS 40.0%
AATGCTTGTCGTCTTCCAAA+GGG - chr3.1:89519077-89519096 MS.gene014481:CDS 40.0%
ACACCACAATTTGCATTCGA+TGG + chr3.1:89519827-89519846 None:intergenic 40.0%
AGCCAAAAGACAGAACTTGT+TGG - chr3.1:89519469-89519488 MS.gene014481:intron 40.0%
AGTGATTCAAAGGAACCTTG+GGG - chr3.1:89519962-89519981 MS.gene014481:CDS 40.0%
ATAATGCTAGCTAGGCAAAC+TGG - chr3.1:89520340-89520359 MS.gene014481:CDS 40.0%
ATGCAAGAGAGACATTGTGA+TGG + chr3.1:89520870-89520889 None:intergenic 40.0%
ATTCATCAGCGATACGAAAC+CGG + chr3.1:89519060-89519079 None:intergenic 40.0%
ATTCTCTTCAGGGTCCTATA+TGG - chr3.1:89518785-89518804 MS.gene014481:CDS 40.0%
CAAGTGATTCAAAGGAACCT+TGG - chr3.1:89519960-89519979 MS.gene014481:CDS 40.0%
CCTACAACCAGTACAAAGAA+AGG + chr3.1:89519779-89519798 None:intergenic 40.0%
CGAGACTAAGAGATAACTCT+TGG + chr3.1:89518980-89518999 None:intergenic 40.0%
CGAGGTGAACATATCCATAT+AGG + chr3.1:89518802-89518821 None:intergenic 40.0%
CGCAATGCAAGTGTAGTATA+TGG + chr3.1:89519888-89519907 None:intergenic 40.0%
CTGTTTCAATACTTCGTGCT+TGG - chr3.1:89520105-89520124 MS.gene014481:intron 40.0%
GATAATCCCAACGATAGTGA+TGG - chr3.1:89519365-89519384 MS.gene014481:intron 40.0%
GCCTATAGGTGTGTTAAACT+TGG + chr3.1:89518880-89518899 None:intergenic 40.0%
GGAAAGCAACAACACATGTT+TGG - chr3.1:89521024-89521043 MS.gene014481:CDS 40.0%
GGATATCTCACAAGAAGGAT+TGG + chr3.1:89519447-89519466 None:intergenic 40.0%
GGTAACTTTACAACTGTGGA+TGG - chr3.1:89520838-89520857 MS.gene014481:CDS 40.0%
GGTAATGTCATGAAATCCTC+CGG + chr3.1:89519162-89519181 None:intergenic 40.0%
GTCTATGCAAATAACTTCGG+GGG - chr3.1:89519403-89519422 MS.gene014481:intron 40.0%
GTTGGGTAACTTTACAACTG+TGG - chr3.1:89520834-89520853 MS.gene014481:CDS 40.0%
GTTGGTTATTATGACAGCGA+TGG - chr3.1:89519728-89519747 MS.gene014481:CDS 40.0%
TACATGAGAGCTGTAAGCAT+TGG + chr3.1:89518937-89518956 None:intergenic 40.0%
TATGGTATCAGGTGGCAAAT+TGG - chr3.1:89520467-89520486 MS.gene014481:CDS 40.0%
TATGGTTACCTCATCCAACA+TGG + chr3.1:89519516-89519535 None:intergenic 40.0%
TCACAATGTCTCTCTTGCAT+TGG - chr3.1:89520870-89520889 MS.gene014481:CDS 40.0%
TCTATGCAAATAACTTCGGG+GGG - chr3.1:89519404-89519423 MS.gene014481:intron 40.0%
TTGAGAAACTGTGAAAGCGA+TGG - chr3.1:89520895-89520914 MS.gene014481:CDS 40.0%
! AGCATTGGAATGCTCATCAA+TGG + chr3.1:89518922-89518941 None:intergenic 40.0%
! GACAAAGCTTTTGTCCATGT+TGG - chr3.1:89519499-89519518 MS.gene014481:CDS 40.0%
! TTTCCATTCCACGTTGCTTT+CGG + chr3.1:89519316-89519335 None:intergenic 40.0%
! TTTTTCTACACGTTCTCTCG+TGG + chr3.1:89520704-89520723 None:intergenic 40.0%
!! AACTGGTTTGACAAGGAATC+AGG - chr3.1:89520357-89520376 MS.gene014481:CDS 40.0%
!! CCTTTCTTTGTACTGGTTGT+AGG - chr3.1:89519776-89519795 MS.gene014481:CDS 40.0%
!! GCAAATTGTGGTGTCATCTT+TGG - chr3.1:89519833-89519852 MS.gene014481:CDS 40.0%
!! TTCAGCATCTTGGTGTTATG+CGG - chr3.1:89520045-89520064 MS.gene014481:intron 40.0%
AAGAAGGAATACCTCGTCTC+CGG - chr3.1:89519988-89520007 MS.gene014481:CDS 45.0%
ATAGTCACTGTGTCGCCTAT+AGG + chr3.1:89518894-89518913 None:intergenic 45.0%
ATCTTTGGACATGGTTGCTG+GGG - chr3.1:89519848-89519867 MS.gene014481:CDS 45.0%
CATCTTTGGACATGGTTGCT+GGG - chr3.1:89519847-89519866 MS.gene014481:CDS 45.0%
CCAACAGCTTAGGCAACAAA+AGG - chr3.1:89520019-89520038 MS.gene014481:CDS 45.0%
CCAACCAAGCATTCTCTTCA+GGG - chr3.1:89518775-89518794 MS.gene014481:CDS 45.0%
CCTGAAGAGAATGCTTGGTT+GGG + chr3.1:89518777-89518796 None:intergenic 45.0%
CTGCCATCGAATGCAAATTG+TGG - chr3.1:89519821-89519840 MS.gene014481:CDS 45.0%
GAATGCTTGTCGTCTTCCAA+AGG - chr3.1:89519076-89519095 MS.gene014481:CDS 45.0%
GCTGAGGATATCTCACAAGA+AGG + chr3.1:89519452-89519471 None:intergenic 45.0%
GTATTCCTTCTTGTTCCCCA+AGG + chr3.1:89519980-89519999 None:intergenic 45.0%
GTTAATGTCCGAAAGCAACG+TGG - chr3.1:89519305-89519324 MS.gene014481:CDS 45.0%
TCATCTTTGGACATGGTTGC+TGG - chr3.1:89519846-89519865 MS.gene014481:CDS 45.0%
! CCTTTTGTTGCCTAAGCTGT+TGG + chr3.1:89520022-89520041 None:intergenic 45.0%
! GCTTTTGTCCATGTTGGATG+AGG - chr3.1:89519505-89519524 MS.gene014481:CDS 45.0%
! GTTACGAAAACGCTCCCTTT+TGG + chr3.1:89519183-89519202 None:intergenic 45.0%
! TGCATGGAAAGCATGTCTTC+CGG - chr3.1:89519140-89519159 MS.gene014481:CDS 45.0%
! TGTGCGTCTTTGGAAACCAA+TGG - chr3.1:89520504-89520523 MS.gene014481:CDS 45.0%
! TTTACAACTGTGGATGGTGG+TGG - chr3.1:89520844-89520863 MS.gene014481:CDS 45.0%
!! CAAAAGGCACTTCAGCATCT+TGG - chr3.1:89520035-89520054 MS.gene014481:intron 45.0%
!! CAAGTTCTGTCTTTTGGCTG+AGG + chr3.1:89519468-89519487 None:intergenic 45.0%
!! CGAAACCGGTGTCATTATAC+TGG + chr3.1:89519046-89519065 None:intergenic 45.0%
!! CTAGGCAAACTGGTTTGACA+AGG - chr3.1:89520350-89520369 MS.gene014481:CDS 45.0%
!! TGTGGTGTCATCTTTGGACA+TGG - chr3.1:89519839-89519858 MS.gene014481:CDS 45.0%
AGGAACCTTGGGGAACAAGA+AGG - chr3.1:89519972-89519991 MS.gene014481:CDS 50.0%
AGGACCCTGAAGAGAATGCT+TGG + chr3.1:89518782-89518801 None:intergenic 50.0%
CCCAACCAAGCATTCTCTTC+AGG - chr3.1:89518774-89518793 MS.gene014481:CDS 50.0%
CCCTGAAGAGAATGCTTGGT+TGG + chr3.1:89518778-89518797 None:intergenic 50.0%
CTCTGAATCCTTGGGGTAAC+TGG + chr3.1:89520317-89520336 None:intergenic 50.0%
GGAGGGACAGATGCATTAGA+AGG + chr3.1:89519014-89519033 None:intergenic 50.0%
GTGAGGTAACAAAGGACTCG+AGG + chr3.1:89518820-89518839 None:intergenic 50.0%
TAAGCTGTTGGTCCACGTAC+CGG + chr3.1:89520010-89520029 None:intergenic 50.0%
TACACGTTCTCTCGTGGAAG+AGG + chr3.1:89520698-89520717 None:intergenic 50.0%
TCTTTGGACATGGTTGCTGG+GGG - chr3.1:89519849-89519868 MS.gene014481:CDS 50.0%
TGTCCGAAAGCAACGTGGAA+TGG - chr3.1:89519310-89519329 MS.gene014481:CDS 50.0%
TTAATGCGCGTGTGCGTCTT+TGG - chr3.1:89520494-89520513 MS.gene014481:CDS 50.0%
! ATGGAAAGCATGTCTTCCGG+AGG - chr3.1:89519143-89519162 MS.gene014481:CDS 50.0%
! GGTTGATACCAGTTACCCCA+AGG - chr3.1:89520306-89520325 MS.gene014481:intron 50.0%
!! TTGGTGTTATGCGGCAAGCA+TGG - chr3.1:89520054-89520073 MS.gene014481:intron 50.0%
!! TTTTCGGGAAGTCCTCTCTG+AGG + chr3.1:89520083-89520102 None:intergenic 50.0%
AATACCTCGTCTCCGGTACG+TGG - chr3.1:89519995-89520014 MS.gene014481:CDS 55.0%
AGGCAGTGATCTGAGGAGTG+AGG + chr3.1:89519206-89519225 None:intergenic 55.0%
ATCCTGCAGGCAGTGATCTG+AGG + chr3.1:89519213-89519232 None:intergenic 55.0%
CAAGCATGGAGACCTCAGAG+AGG - chr3.1:89520068-89520087 MS.gene014481:intron 55.0%
CACTGCCTGCAGGATTCACA+AGG - chr3.1:89519218-89519237 MS.gene014481:CDS 55.0%
GGCAGTGATCTGAGGAGTGA+GGG + chr3.1:89519205-89519224 None:intergenic 55.0%
GGTACGTGGACCAACAGCTT+AGG - chr3.1:89520009-89520028 MS.gene014481:CDS 55.0%
CTCCTCAGATCACTGCCTGC+AGG - chr3.1:89519208-89519227 MS.gene014481:CDS 60.0%
TTGGACATGGTTGCTGGGGG+TGG - chr3.1:89519852-89519871 MS.gene014481:CDS 60.0%
TGGTCCACGTACCGGAGACG+AGG + chr3.1:89520002-89520021 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 89518768 89521080 89518768 ID=MS.gene014481
chr3.1 mRNA 89518768 89521080 89518768 ID=MS.gene014481.t1;Parent=MS.gene014481
chr3.1 exon 89520322 89521080 89520322 ID=MS.gene014481.t1.exon1;Parent=MS.gene014481.t1
chr3.1 CDS 89520322 89521080 89520322 ID=cds.MS.gene014481.t1;Parent=MS.gene014481.t1
chr3.1 exon 89519698 89520050 89519698 ID=MS.gene014481.t1.exon2;Parent=MS.gene014481.t1
chr3.1 CDS 89519698 89520050 89519698 ID=cds.MS.gene014481.t1;Parent=MS.gene014481.t1
chr3.1 exon 89519470 89519530 89519470 ID=MS.gene014481.t1.exon3;Parent=MS.gene014481.t1
chr3.1 CDS 89519470 89519530 89519470 ID=cds.MS.gene014481.t1;Parent=MS.gene014481.t1
chr3.1 exon 89518768 89519370 89518768 ID=MS.gene014481.t1.exon4;Parent=MS.gene014481.t1
chr3.1 CDS 89518768 89519370 89518768 ID=cds.MS.gene014481.t1;Parent=MS.gene014481.t1
Gene Sequence

>MS.gene014481

ATGTATCCCAACCAAGCATTCTCTTCAGGGTCCTATATGGATATGTTCACCTCGAGTCCTTTGTTACCTCACAATTACTACAATGAATCTGCAGCAAAACAAAATGAAACCAAGTTTAACACACCTATAGGCGACACAGTGACTATACAGTCCATTGATGAGCATTCCAATGCTTACAGCTCTCATGTAGATGAGCAAAATATACAATGCCAAGAGTTATCTCTTAGTCTCGGGACACTACTGCCTTCTAATGCATCTGTCCCTCCATTTCAATACCAGTATAATGACACCGGTTTCGTATCGCTGATGAATGCTTGTCGTCTTCCAAAGGGAACTACTATATCTAACGAAGATGAATTGAAAAGTGTCGAATGCATGGAAAGCATGTCTTCCGGAGGATTTCATGACATTACCAAAAGGGAGCGTTTTCGTAACCCTCACTCCTCAGATCACTGCCTGCAGGATTCACAAGGTTTTTCCAACATTTTCCTAAACTCTCAATATCTTAAGGCTACACAGGAGTTACTTGATGAGATAGTTAATGTCCGAAAGCAACGTGGAATGGAAAAGCAAGAAAAAATCCGCAACATTGGATTGGATAATCCCAACGATAGTGATGGAAAATTTACTAGTCAGTCTATGCAAATAACTTCGGGGGGACCTAATGATTCTAATTCCAATCCTTCTTGTGAGATATCCTCAGCCAAAAGACAGAACTTGTTGGATAAGAAGACAAAGCTTTTGTCCATGTTGGATGAGGTAACCATATTATTTAGCATTGCATCTTTCCTTTTATGGATTTAATTTGTATGCTCTAACAGACTAACAGTGTAAAAACTTTATCATAAGGTTCTATCATCGAAAAAGTTTGACTATTATCATATAACTTCTATTGGTTAATAGTGAAAAATAATTTTATACCGATAGTGTGTGACAATTATTCTCTTCTTTTATTCCATAGTTGGTTATTATGACAGCGATGGTTTGGCTGATTGTCGAATCTGTAATCCTTTCTTTGTACTGGTTGTAGGTAGACAAAAGATACAGACAGTACTGCCATCGAATGCAAATTGTGGTGTCATCTTTGGACATGGTTGCTGGGGGTGGAGCAGCAGAGCCATATACTACACTTGCATTGCGAACAATTTCGCGTCAGTTTCGCTGCTTGCGCGATGCTATCAGCAACCAAGTTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATACCTCGTCTCCGGTACGTGGACCAACAGCTTAGGCAACAAAAGGCACTTCAGCATCTTGGTGTTATGCGGCAAGCATGGAGACCTCAGAGAGGACTTCCCGAAAACTCTGTTTCAATACTTCGTGCTTGGCTCTTTGAACATTTTCTTAATCCGTATGTGTTACTTTATAATACCCTCTAAATTCTAATCCTTCACTCAATTTTATATTTTCAATTAGTTGTAATGGTTTCATATTATGCTACTTTCATAATATTTTCTATCTATGTGTATTTTAATCAAATTCTTTTTCAACTTTCATTTCATAATTGGTTGATACCAGTTACCCCAAGGATTCAGAGAAAATAATGCTAGCTAGGCAAACTGGTTTGACAAGGAATCAGGTACAGTTATAATTAATCAAATAATTTTTTCTGTGCAACATTATTTTCATTAAACTTGTTGCTAATCTTTAATGAGACATTTATATGGTATGGTATCAGGTGGCAAATTGGTTCATTAATGCGCGTGTGCGTCTTTGGAAACCAATGGTTGAAGAAATATACAAAGAAGAGTTTGGTGACTCTGAAATGAACTGCAATTTTTCATCTGAAAATACACTCCAAGGTAAAAGAGATTATGGTCATGAGATTAATAATAAATTGGAAGAAGAGTCACAAGACAATGTACAAATTATTACTAGTGATCATAGTGTACAAGCCTCTTCCACGAGAGAACGTGTAGAAAAAAATGTGATAGATTGTGGAAATGGAAAATTGCATGGTAACCAAAGGCTCAGCATAAAAAATGGCTTTTATTCACAAATAGATTCTGATTCTGCCACATATGATTTAATAGAGTTGGGTAACTTTACAACTGTGGATGGTGGTGGCCATCACAATGTCTCTCTTGCATTGGAGTTGAGAAACTGTGAAAGCGATGGATTAGCTACATCTGATGATGCCATTCATAAAAGACATAATAATAATCAGACATTGGTTTCTTCTTCACAGAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACATGTTTGGCAATACTCATCTGTTGCATGAATTTGTCGTATGA

Protein sequence

>MS.gene014481.t1

MYPNQAFSSGSYMDMFTSSPLLPHNYYNESAAKQNETKFNTPIGDTVTIQSIDEHSNAYSSHVDEQNIQCQELSLSLGTLLPSNASVPPFQYQYNDTGFVSLMNACRLPKGTTISNEDELKSVECMESMSSGGFHDITKRERFRNPHSSDHCLQDSQGFSNIFLNSQYLKATQELLDEIVNVRKQRGMEKQEKIRNIGLDNPNDSDGKFTSQSMQITSGGPNDSNSNPSCEISSAKRQNLLDKKTKLLSMLDEVDKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTISRQFRCLRDAISNQVQVIQRNLGEQEGIPRLRYVDQQLRQQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMNCNFSSENTLQGKRDYGHEINNKLEEESQDNVQIITSDHSVQASSTRERVEKNVIDCGNGKLHGNQRLSIKNGFYSQIDSDSATYDLIELGNFTTVDGGGHHNVSLALELRNCESDGLATSDDAIHKRHNNNQTLVSSSQSTDLLDYHFTDSGKQQHMFGNTHLLHEFVV