Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014482.t1 | XP_013462164.1 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 4.20E-228 | 800.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014482.t1 | Q1PFD1 | 60.0 | 265 | 97 | 5 | 173 | 431 | 19 | 280 | 1.0e-81 | 305.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014482.t1 | A0A072V2D2 | 96.9 | 448 | 9 | 2 | 1 | 448 | 1 | 443 | 3.0e-228 | 800.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014482.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014482.t1 | MTR_3g112290 | 96.875 | 448 | 9 | 3 | 1 | 448 | 1 | 443 | 0.0 | 887 |
| MS.gene014482.t1 | MTR_1g023050 | 50.903 | 277 | 105 | 7 | 173 | 432 | 173 | 435 | 1.95e-78 | 256 |
| MS.gene014482.t1 | MTR_3g112300 | 45.645 | 287 | 122 | 6 | 163 | 432 | 155 | 424 | 1.39e-71 | 235 |
| MS.gene014482.t1 | MTR_3g112300 | 44.898 | 294 | 128 | 6 | 163 | 439 | 155 | 431 | 6.39e-71 | 235 |
| MS.gene014482.t1 | MTR_4g051532 | 46.290 | 283 | 134 | 6 | 170 | 442 | 217 | 491 | 7.85e-67 | 227 |
| MS.gene014482.t1 | MTR_7g106320 | 46.503 | 286 | 120 | 6 | 168 | 432 | 169 | 442 | 2.91e-65 | 221 |
| MS.gene014482.t1 | MTR_5g018860 | 43.000 | 300 | 150 | 9 | 136 | 427 | 312 | 598 | 3.24e-65 | 223 |
| MS.gene014482.t1 | MTR_1g057790 | 45.817 | 251 | 128 | 4 | 169 | 414 | 160 | 407 | 1.00e-64 | 220 |
| MS.gene014482.t1 | MTR_8g078480 | 44.322 | 273 | 135 | 6 | 170 | 431 | 388 | 654 | 3.82e-63 | 219 |
| MS.gene014482.t1 | MTR_4g019450 | 41.328 | 271 | 128 | 5 | 167 | 431 | 193 | 438 | 1.93e-60 | 207 |
| MS.gene014482.t1 | MTR_7g065050 | 41.948 | 267 | 136 | 4 | 167 | 431 | 134 | 383 | 1.65e-58 | 200 |
| MS.gene014482.t1 | MTR_8g098815 | 54.645 | 183 | 73 | 5 | 239 | 416 | 255 | 432 | 1.19e-57 | 200 |
| MS.gene014482.t1 | MTR_2g095050 | 40.132 | 304 | 139 | 8 | 159 | 432 | 230 | 520 | 2.06e-56 | 197 |
| MS.gene014482.t1 | MTR_3g112300 | 41.961 | 255 | 114 | 6 | 163 | 400 | 155 | 392 | 2.76e-51 | 178 |
| MS.gene014482.t1 | MTR_1g016490 | 36.466 | 266 | 147 | 7 | 167 | 422 | 240 | 493 | 3.70e-40 | 151 |
| MS.gene014482.t1 | MTR_3g112300 | 38.889 | 234 | 109 | 6 | 163 | 379 | 155 | 371 | 8.91e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014482.t1 | AT1G75430 | 60.755 | 265 | 95 | 6 | 173 | 431 | 19 | 280 | 2.62e-106 | 317 |
| MS.gene014482.t1 | AT1G75410 | 49.632 | 272 | 125 | 4 | 162 | 429 | 159 | 422 | 3.50e-78 | 252 |
| MS.gene014482.t1 | AT1G75410 | 49.632 | 272 | 125 | 4 | 162 | 429 | 159 | 422 | 3.50e-78 | 252 |
| MS.gene014482.t1 | AT2G16400 | 47.405 | 289 | 128 | 7 | 148 | 433 | 98 | 365 | 2.45e-77 | 249 |
| MS.gene014482.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene014482.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene014482.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene014482.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene014482.t1 | AT1G19700 | 49.474 | 285 | 109 | 7 | 164 | 429 | 159 | 427 | 7.56e-77 | 249 |
| MS.gene014482.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene014482.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene014482.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene014482.t1 | AT4G34610 | 48.540 | 274 | 118 | 7 | 170 | 437 | 140 | 396 | 8.43e-71 | 233 |
| MS.gene014482.t1 | AT1G75430 | 54.930 | 213 | 87 | 6 | 173 | 379 | 19 | 228 | 7.81e-68 | 218 |
| MS.gene014482.t1 | AT4G36870 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 1.66e-61 | 213 |
| MS.gene014482.t1 | AT4G36870 | 46.269 | 268 | 117 | 10 | 170 | 422 | 312 | 567 | 1.66e-61 | 213 |
| MS.gene014482.t1 | AT2G35940 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 2.68e-58 | 203 |
| MS.gene014482.t1 | AT2G35940 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 2.68e-58 | 203 |
| MS.gene014482.t1 | AT2G35940 | 41.935 | 279 | 128 | 6 | 163 | 414 | 175 | 446 | 2.68e-58 | 203 |
| MS.gene014482.t1 | AT2G27220 | 43.373 | 249 | 108 | 4 | 176 | 423 | 82 | 298 | 7.92e-58 | 196 |
| MS.gene014482.t1 | AT2G27220 | 43.373 | 249 | 108 | 4 | 176 | 423 | 82 | 298 | 7.92e-58 | 196 |
| MS.gene014482.t1 | AT2G23760 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 1.61e-57 | 200 |
| MS.gene014482.t1 | AT2G23760 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 1.61e-57 | 200 |
| MS.gene014482.t1 | AT2G23760 | 44.610 | 269 | 119 | 8 | 170 | 421 | 237 | 492 | 1.61e-57 | 200 |
| MS.gene014482.t1 | AT5G02030 | 37.705 | 305 | 173 | 3 | 125 | 423 | 125 | 418 | 9.61e-57 | 197 |
| MS.gene014482.t1 | AT1G75410 | 44.856 | 243 | 122 | 4 | 162 | 400 | 159 | 393 | 7.46e-56 | 191 |
| MS.gene014482.t1 | AT2G27220 | 42.586 | 263 | 108 | 8 | 176 | 423 | 82 | 316 | 1.23e-55 | 191 |
| MS.gene014482.t1 | AT2G27990 | 41.154 | 260 | 126 | 4 | 167 | 423 | 259 | 494 | 4.26e-54 | 190 |
| MS.gene014482.t1 | AT5G41410 | 40.702 | 285 | 141 | 5 | 171 | 433 | 194 | 472 | 1.81e-51 | 183 |
| MS.gene014482.t1 | AT2G23760 | 37.383 | 321 | 119 | 9 | 170 | 421 | 237 | 544 | 6.73e-48 | 174 |
| MS.gene014482.t1 | AT4G36870 | 42.915 | 247 | 114 | 10 | 170 | 401 | 312 | 546 | 2.20e-45 | 166 |
| MS.gene014482.t1 | AT4G36870 | 42.449 | 245 | 114 | 10 | 170 | 399 | 312 | 544 | 3.56e-44 | 162 |
| MS.gene014482.t1 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 3.82e-40 | 150 |
| MS.gene014482.t1 | AT4G32980 | 36.071 | 280 | 149 | 6 | 152 | 422 | 183 | 441 | 3.82e-40 | 150 |
| MS.gene014482.t1 | AT2G27990 | 34.722 | 216 | 114 | 4 | 167 | 379 | 259 | 450 | 2.95e-28 | 116 |
Find 79 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATTCATGGACATTTAT+TGG | 0.202908 | 3.1:-89511942 | MS.gene014482:CDS |
| GATCATAAGACCTTGATTTA+AGG | 0.203423 | 3.1:+89512336 | None:intergenic |
| CGTTCTACTTCTACTTCTTA+TGG | 0.209074 | 3.1:-89512151 | MS.gene014482:CDS |
| TGAGAAAAGAAAACTGTTTC+AGG | 0.210768 | 3.1:-89511099 | MS.gene014482:CDS |
| AGCATTTATTTGGGACATTA+TGG | 0.234641 | 3.1:+89511121 | None:intergenic |
| AGAATTGCTACAGATGTTTC+AGG | 0.303192 | 3.1:+89510939 | None:intergenic |
| CAAGGTCTATCCCTTTCTTT+AGG | 0.320317 | 3.1:-89512394 | MS.gene014482:CDS |
| ATACTACTTCTTCCATTTGA+TGG | 0.326054 | 3.1:+89511240 | None:intergenic |
| TTGTACATTTCTTCTATCAT+TGG | 0.327367 | 3.1:+89510472 | None:intergenic |
| TGCAAAGCTCATTTCATTGT+TGG | 0.330686 | 3.1:-89511891 | MS.gene014482:CDS |
| CACCACCTAGTAGTAGTTCT+TGG | 0.332157 | 3.1:+89512575 | None:intergenic |
| TTCAAAACCAACGACAAGTT+TGG | 0.336930 | 3.1:-89510980 | MS.gene014482:CDS |
| GAAGTGACTGTACTGGTTTA+AGG | 0.338310 | 3.1:+89512089 | None:intergenic |
| TTACACTGCTTTGGCACTTC+AGG | 0.345280 | 3.1:-89511177 | MS.gene014482:CDS |
| AGATGTCACTGTGGAGGATT+AGG | 0.348390 | 3.1:-89510386 | None:intergenic |
| AGCTGGCGGGTTGGAGTCTT+CGG | 0.349210 | 3.1:+89510429 | None:intergenic |
| ATTAACTTCTCAGAGTCATT+AGG | 0.369658 | 3.1:+89510783 | None:intergenic |
| GAAATGTACAAAGAAGAGTT+TGG | 0.376842 | 3.1:-89510460 | MS.gene014482:CDS |
| GTTTCAGGTAACCCTCTAAT+AGG | 0.383713 | 3.1:+89510954 | None:intergenic |
| CTTGAAGATCTTGTTGATGT+TGG | 0.386052 | 3.1:-89512067 | MS.gene014482:CDS |
| TTAATCCTGGCTTCCCAAAC+AGG | 0.402326 | 3.1:-89510765 | MS.gene014482:CDS |
| GAGTCACACAAGACATTTGA+TGG | 0.404453 | 3.1:-89512458 | MS.gene014482:CDS |
| TGTTGGTTCAGGTGTCAAAT+TGG | 0.407480 | 3.1:-89510525 | MS.gene014482:intron |
| TTTGAAATGATAGCAGGTTT+GGG | 0.408450 | 3.1:-89511212 | MS.gene014482:CDS |
| TGCAAAGTGTTACACTGCTT+TGG | 0.409703 | 3.1:-89511186 | MS.gene014482:CDS |
| AAAGCAGAGTTGAGGATTCA+TGG | 0.417721 | 3.1:-89511953 | MS.gene014482:CDS |
| TCTTATGGAAGTGAGAGTTT+TGG | 0.428359 | 3.1:-89512136 | MS.gene014482:CDS |
| TTGTTTCATGGGAGTAGAAC+AGG | 0.428923 | 3.1:-89512001 | MS.gene014482:CDS |
| CTGTAGCAATTCTTCGTGCT+TGG | 0.430609 | 3.1:-89510929 | MS.gene014482:CDS |
| TTCAATGGTGGAAATGGAGG+TGG | 0.430738 | 3.1:-89512226 | MS.gene014482:CDS |
| TATGCTGAGAAGTTGTTTCA+TGG | 0.434153 | 3.1:-89512013 | MS.gene014482:CDS |
| GAATCCTCAACTCTGCTTTG+AGG | 0.436275 | 3.1:+89511957 | None:intergenic |
| TGACCAGGCATGAAGTAACT+TGG | 0.451078 | 3.1:+89512310 | None:intergenic |
| CAAGTTTGGAGACCTATTAG+AGG | 0.455849 | 3.1:-89510966 | MS.gene014482:CDS |
| GGGATAGACCTTGTTGTGTC+TGG | 0.465614 | 3.1:+89512404 | None:intergenic |
| TTAAACCTGTTTGGGAAGCC+AGG | 0.480873 | 3.1:+89510760 | None:intergenic |
| CTTGACATAAAATTGTTAGC+TGG | 0.489551 | 3.1:+89510412 | None:intergenic |
| TGACTCTGAGAAGTTAATCC+TGG | 0.499019 | 3.1:-89510778 | MS.gene014482:CDS |
| TTTGAATGACACCAAGTTGT+TGG | 0.503416 | 3.1:+89510997 | None:intergenic |
| GCTCATTTCATTGTTGGATG+AGG | 0.504055 | 3.1:-89511885 | MS.gene014482:intron |
| CTTGTTAGATTCTCCACCAC+AGG | 0.504734 | 3.1:+89512259 | None:intergenic |
| TGAGAAGTACTACCATCAAA+TGG | 0.506912 | 3.1:-89511252 | MS.gene014482:CDS |
| TCCACCACAGGTTGATTACA+AGG | 0.508130 | 3.1:+89512271 | None:intergenic |
| GAAGATCTTGTTGATGTTGG+TGG | 0.515827 | 3.1:-89512064 | MS.gene014482:CDS |
| AACCCAAGTTACTTCATGCC+TGG | 0.516099 | 3.1:-89512313 | MS.gene014482:CDS |
| TTAATGCAAGGGTACGGCTA+TGG | 0.523142 | 3.1:-89510498 | MS.gene014482:CDS |
| CAAATTGGTTCATTAATGCA+AGG | 0.528439 | 3.1:-89510510 | MS.gene014482:CDS |
| CATGTGAGAGCCTAAAGAAA+GGG | 0.530908 | 3.1:+89512384 | None:intergenic |
| ATGCTGAGAAGTTGTTTCAT+GGG | 0.532525 | 3.1:-89512012 | MS.gene014482:CDS |
| TGGCACTTCAGGCAATGTCT+AGG | 0.533896 | 3.1:-89511166 | MS.gene014482:CDS |
| TCTTCAAGAAGTGACTGTAC+TGG | 0.534996 | 3.1:+89512082 | None:intergenic |
| ACATAAAATTGTTAGCTGGC+GGG | 0.535342 | 3.1:+89510416 | None:intergenic |
| AGAAACCGTTCCTTAAATCA+AGG | 0.535526 | 3.1:-89512346 | MS.gene014482:CDS |
| TAGGTCTCCAAACTTGTCGT+TGG | 0.537318 | 3.1:+89510973 | None:intergenic |
| GATGTACCTAAAATTAATAG+TGG | 0.538946 | 3.1:-89511077 | MS.gene014482:CDS |
| GCATGTGAGAGCCTAAAGAA+AGG | 0.546878 | 3.1:+89512383 | None:intergenic |
| TAAGACCTTGATTTAAGGAA+CGG | 0.549373 | 3.1:+89512341 | None:intergenic |
| AGACATTTGATGGATCTACT+TGG | 0.551807 | 3.1:-89512448 | MS.gene014482:CDS |
| AAAATTGTTAGCTGGCGGGT+TGG | 0.557706 | 3.1:+89510420 | None:intergenic |
| AGAATGTCTCTCCAACAACT+TGG | 0.557966 | 3.1:-89511008 | MS.gene014482:CDS |
| GACCAGGCATGAAGTAACTT+GGG | 0.566873 | 3.1:+89512311 | None:intergenic |
| GAGAACCAAGAACTACTACT+AGG | 0.567546 | 3.1:-89512580 | MS.gene014482:CDS |
| GGTTCATTAATGCAAGGGTA+CGG | 0.572871 | 3.1:-89510504 | MS.gene014482:CDS |
| AAATTGGTTCATTAATGCAA+GGG | 0.576729 | 3.1:-89510509 | MS.gene014482:CDS |
| GACATAAAATTGTTAGCTGG+CGG | 0.577181 | 3.1:+89510415 | None:intergenic |
| AAGTTTGGAGACCTATTAGA+GGG | 0.581283 | 3.1:-89510965 | MS.gene014482:CDS |
| TCACGTGTCTGATCTTGACC+AGG | 0.591778 | 3.1:+89512295 | None:intergenic |
| CAACTCTGCTTTGAGGTCAG+AGG | 0.594657 | 3.1:+89511964 | None:intergenic |
| CATAAGAAGTAGAAGTAGAA+CGG | 0.599560 | 3.1:+89512152 | None:intergenic |
| AATGCATATCATGAATCACT+TGG | 0.609154 | 3.1:-89512523 | MS.gene014482:CDS |
| AACAATATTGGACTAACACA+AGG | 0.620037 | 3.1:-89512490 | MS.gene014482:CDS |
| GCCTTGTAATCAACCTGTGG+TGG | 0.623528 | 3.1:-89512272 | MS.gene014482:CDS |
| AATAATCACCAGACACAACA+AGG | 0.630483 | 3.1:-89512412 | MS.gene014482:CDS |
| AAGGGAAGATGTCACTGTGG+AGG | 0.641601 | 3.1:-89510392 | MS.gene014482:CDS |
| CAAGAACTACTACTAGGTGG+TGG | 0.646214 | 3.1:-89512574 | MS.gene014482:CDS |
| CTGACCTCAAAGCAGAGTTG+AGG | 0.668038 | 3.1:-89511961 | MS.gene014482:CDS |
| AACCAAGAACTACTACTAGG+TGG | 0.711092 | 3.1:-89512577 | MS.gene014482:CDS |
| TGAGCCTTGTAATCAACCTG+TGG | 0.732645 | 3.1:-89512275 | MS.gene014482:CDS |
| GTCAAGGGAAGATGTCACTG+TGG | 0.757361 | 3.1:-89510395 | MS.gene014482:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATGTGAAAAAAAT+TGG | + | chr3.1:89512300-89512319 | None:intergenic | 15.0% |
| !!! | AAACAAAAATCAAATTGTTT+TGG | - | chr3.1:89511276-89511295 | MS.gene014482:intron | 15.0% |
| !!! | TTTTTCACATTTTCTTTTAT+GGG | - | chr3.1:89512303-89512322 | MS.gene014482:CDS | 15.0% |
| !!! | TTTTTTCACATTTTCTTTTA+TGG | - | chr3.1:89512302-89512321 | MS.gene014482:CDS | 15.0% |
| !! | AAAAAGAAAAACAAATTGAG+AGG | - | chr3.1:89511489-89511508 | MS.gene014482:intron | 20.0% |
| !! | ATATAAGTGTTAGATATACT+TGG | + | chr3.1:89511653-89511672 | None:intergenic | 20.0% |
| !! | ATTAATGAAATGCTAATTTG+AGG | - | chr3.1:89512179-89512198 | MS.gene014482:CDS | 20.0% |
| !! | TATAAGTGTTAGATATACTT+GGG | + | chr3.1:89511652-89511671 | None:intergenic | 20.0% |
| !!! | ACAAGTGATTATTTTTTCAA+TGG | - | chr3.1:89510762-89510781 | MS.gene014482:CDS | 20.0% |
| !!! | AGAATTTTGATATAAGCTTA+CGG | + | chr3.1:89512121-89512140 | None:intergenic | 20.0% |
| !!! | TTTTTCGAAGTTATTTATGA+TGG | - | chr3.1:89512437-89512456 | MS.gene014482:CDS | 20.0% |
| ! | AAGCTATCTTAGAGAATTTA+TGG | - | chr3.1:89511344-89511363 | MS.gene014482:intron | 25.0% |
| ! | AAGTTCATTAGAATAAGTGT+AGG | - | chr3.1:89511533-89511552 | MS.gene014482:intron | 25.0% |
| ! | AGCTATCTTAGAGAATTTAT+GGG | - | chr3.1:89511345-89511364 | MS.gene014482:intron | 25.0% |
| ! | GATGTACCTAAAATTAATAG+TGG | - | chr3.1:89511926-89511945 | MS.gene014482:CDS | 25.0% |
| ! | TAGCATTTCATTAATAAGAC+AGG | + | chr3.1:89512174-89512193 | None:intergenic | 25.0% |
| ! | TATGTTAATGTATTGAGTGT+TGG | - | chr3.1:89512461-89512480 | MS.gene014482:CDS | 25.0% |
| ! | TTGTACATTTCTTCTATCAT+TGG | + | chr3.1:89512534-89512553 | None:intergenic | 25.0% |
| !! | AAAGTTGGTTAGTAATTAGT+TGG | + | chr3.1:89511609-89511628 | None:intergenic | 25.0% |
| !! | AAATTGGTTCATTAATGCAA+GGG | - | chr3.1:89512494-89512513 | MS.gene014482:CDS | 25.0% |
| !! | AAGTTGGTTAGTAATTAGTT+GGG | + | chr3.1:89511608-89511627 | None:intergenic | 25.0% |
| !! | AGCTAACAATTTTATGTCAA+GGG | - | chr3.1:89512593-89512612 | MS.gene014482:CDS | 25.0% |
| !! | GACAATCCACTATTAATTTT+AGG | + | chr3.1:89511935-89511954 | None:intergenic | 25.0% |
| !! | GGAACATTTTCTAACAATAT+TGG | - | chr3.1:89510501-89510520 | MS.gene014482:CDS | 25.0% |
| !! | TCTTTTCTCAGCATTTATTT+GGG | + | chr3.1:89511894-89511913 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCAGCATTTATT+TGG | + | chr3.1:89511895-89511914 | None:intergenic | 25.0% |
| !!! | AGTGATTATTTTTTCAATGG+TGG | - | chr3.1:89510765-89510784 | MS.gene014482:CDS | 25.0% |
| !!! | ATTTGTTGTGCTTAATTTTC+AGG | - | chr3.1:89511715-89511734 | MS.gene014482:intron | 25.0% |
| !!! | GTTCTCAAATTGATTTTGAT+GGG | + | chr3.1:89510409-89510428 | None:intergenic | 25.0% |
| !!! | TATTTTTTCAATGGTGGAAA+TGG | - | chr3.1:89510771-89510790 | MS.gene014482:CDS | 25.0% |
| AACAATATTGGACTAACACA+AGG | - | chr3.1:89510513-89510532 | MS.gene014482:CDS | 30.0% | |
| AATAATAAGCACTTGTGAGA+CGG | + | chr3.1:89511447-89511466 | None:intergenic | 30.0% | |
| AATGCATATCATGAATCACT+TGG | - | chr3.1:89510480-89510499 | MS.gene014482:CDS | 30.0% | |
| ATACTACTTCTTCCATTTGA+TGG | + | chr3.1:89511766-89511785 | None:intergenic | 30.0% | |
| ATTAACTTCTCAGAGTCATT+AGG | + | chr3.1:89512223-89512242 | None:intergenic | 30.0% | |
| CATAAGAAGTAGAAGTAGAA+CGG | + | chr3.1:89510854-89510873 | None:intergenic | 30.0% | |
| CTTGACATAAAATTGTTAGC+TGG | + | chr3.1:89512594-89512613 | None:intergenic | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | - | chr3.1:89512543-89512562 | MS.gene014482:CDS | 30.0% | |
| GATCATAAGACCTTGATTTA+AGG | + | chr3.1:89510670-89510689 | None:intergenic | 30.0% | |
| GTGCTTATTATTGAGAAACA+TGG | - | chr3.1:89511455-89511474 | MS.gene014482:intron | 30.0% | |
| TAAGACCTTGATTTAAGGAA+CGG | + | chr3.1:89510665-89510684 | None:intergenic | 30.0% | |
| TGAGAAAAGAAAACTGTTTC+AGG | - | chr3.1:89511904-89511923 | MS.gene014482:CDS | 30.0% | |
| TTATGGGTAGAAATTGAGTT+AGG | - | chr3.1:89512319-89512338 | MS.gene014482:CDS | 30.0% | |
| ! | AGCATTTATTTGGGACATTA+TGG | + | chr3.1:89511885-89511904 | None:intergenic | 30.0% |
| ! | CAAATTGGTTCATTAATGCA+AGG | - | chr3.1:89512493-89512512 | MS.gene014482:CDS | 30.0% |
| ! | CAGCTAACAATTTTATGTCA+AGG | - | chr3.1:89512592-89512611 | MS.gene014482:CDS | 30.0% |
| ! | GGGAAAATGTCAAATAGTTT+TGG | - | chr3.1:89511365-89511384 | MS.gene014482:intron | 30.0% |
| ! | TTTGAAATGATAGCAGGTTT+GGG | - | chr3.1:89511791-89511810 | MS.gene014482:intron | 30.0% |
| !! | AAATTGATTTTGATGGGTCA+TGG | + | chr3.1:89510403-89510422 | None:intergenic | 30.0% |
| !! | GGTTCTCAAATTGATTTTGA+TGG | + | chr3.1:89510410-89510429 | None:intergenic | 30.0% |
| !! | GTTAAAGGTACTTACAAAGT+TGG | + | chr3.1:89511624-89511643 | None:intergenic | 30.0% |
| !! | TATACTTGGGAGTTTGTTAA+AGG | + | chr3.1:89511639-89511658 | None:intergenic | 30.0% |
| !!! | AGAGTTTTGGTTCTGTTATT+GGG | - | chr3.1:89510880-89510899 | MS.gene014482:intron | 30.0% |
| !!! | GTTTTTGGTTAAACCTGTTT+GGG | + | chr3.1:89512254-89512273 | None:intergenic | 30.0% |
| !!! | TCATCTTTTGAAATGATAGC+AGG | - | chr3.1:89511785-89511804 | MS.gene014482:intron | 30.0% |
| !!! | TTTTGAAATGATAGCAGGTT+TGG | - | chr3.1:89511790-89511809 | MS.gene014482:intron | 30.0% |
| AAGTTTGGAGACCTATTAGA+GGG | - | chr3.1:89512038-89512057 | MS.gene014482:CDS | 35.0% | |
| AATAATCACCAGACACAACA+AGG | - | chr3.1:89510591-89510610 | MS.gene014482:intron | 35.0% | |
| ACATAAAATTGTTAGCTGGC+GGG | + | chr3.1:89512590-89512609 | None:intergenic | 35.0% | |
| AGAAACCGTTCCTTAAATCA+AGG | - | chr3.1:89510657-89510676 | MS.gene014482:intron | 35.0% | |
| AGAATTGCTACAGATGTTTC+AGG | + | chr3.1:89512067-89512086 | None:intergenic | 35.0% | |
| ATTTCATTGTTGGATGAGGT+TGG | - | chr3.1:89511122-89511141 | MS.gene014482:CDS | 35.0% | |
| CACTTTAGTCTCTACTTACT+TGG | + | chr3.1:89512276-89512295 | None:intergenic | 35.0% | |
| CGTTCTACTTCTACTTCTTA+TGG | - | chr3.1:89510852-89510871 | MS.gene014482:intron | 35.0% | |
| CTTGAAGATCTTGTTGATGT+TGG | - | chr3.1:89510936-89510955 | MS.gene014482:CDS | 35.0% | |
| GACATAAAATTGTTAGCTGG+CGG | + | chr3.1:89512591-89512610 | None:intergenic | 35.0% | |
| GAGGATTCATGGACATTTAT+TGG | - | chr3.1:89511061-89511080 | MS.gene014482:CDS | 35.0% | |
| TGCAAAGCTCATTTCATTGT+TGG | - | chr3.1:89511112-89511131 | MS.gene014482:CDS | 35.0% | |
| TTCAAAACCAACGACAAGTT+TGG | - | chr3.1:89512023-89512042 | MS.gene014482:CDS | 35.0% | |
| TTTGAATGACACCAAGTTGT+TGG | + | chr3.1:89512009-89512028 | None:intergenic | 35.0% | |
| ! | AGACATTTGATGGATCTACT+TGG | - | chr3.1:89510555-89510574 | MS.gene014482:intron | 35.0% |
| ! | ATGCTGAGAAGTTGTTTCAT+GGG | - | chr3.1:89510991-89511010 | MS.gene014482:CDS | 35.0% |
| ! | TATGCTGAGAAGTTGTTTCA+TGG | - | chr3.1:89510990-89511009 | MS.gene014482:CDS | 35.0% |
| ! | TCTTATGGAAGTGAGAGTTT+TGG | - | chr3.1:89510867-89510886 | MS.gene014482:intron | 35.0% |
| !! | AATGTATTGAGTGTTGGTTC+AGG | - | chr3.1:89512467-89512486 | MS.gene014482:CDS | 35.0% |
| !! | GTCTCTACTTACTTGGTTTT+TGG | + | chr3.1:89512269-89512288 | None:intergenic | 35.0% |
| !! | TGAGAAGTACTACCATCAAA+TGG | - | chr3.1:89511751-89511770 | MS.gene014482:intron | 35.0% |
| !! | TTTTTCAATGGTGGAAATGG+AGG | - | chr3.1:89510774-89510793 | MS.gene014482:CDS | 35.0% |
| !!! | GAGAGTTTTGGTTCTGTTAT+TGG | - | chr3.1:89510879-89510898 | MS.gene014482:intron | 35.0% |
| !!! | GCTTTGCAATTTTGACTTGA+TGG | + | chr3.1:89511100-89511119 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGTTAAACCTGTT+TGG | + | chr3.1:89512255-89512274 | None:intergenic | 35.0% |
| !!! | GTGCTTAATTTTCAGGTTGA+GGG | - | chr3.1:89511722-89511741 | MS.gene014482:intron | 35.0% |
| !!! | TGTGCTTAATTTTCAGGTTG+AGG | - | chr3.1:89511721-89511740 | MS.gene014482:intron | 35.0% |
| AAAGCAGAGTTGAGGATTCA+TGG | - | chr3.1:89511050-89511069 | MS.gene014482:CDS | 40.0% | |
| AACCAAGAACTACTACTAGG+TGG | - | chr3.1:89510426-89510445 | MS.gene014482:CDS | 40.0% | |
| AGAATGTCTCTCCAACAACT+TGG | - | chr3.1:89511995-89512014 | MS.gene014482:CDS | 40.0% | |
| CAAGGTCTATCCCTTTCTTT+AGG | - | chr3.1:89510609-89510628 | MS.gene014482:intron | 40.0% | |
| CAAGTTTGGAGACCTATTAG+AGG | - | chr3.1:89512037-89512056 | MS.gene014482:CDS | 40.0% | |
| CATGTGAGAGCCTAAAGAAA+GGG | + | chr3.1:89510622-89510641 | None:intergenic | 40.0% | |
| GAAGATCTTGTTGATGTTGG+TGG | - | chr3.1:89510939-89510958 | MS.gene014482:CDS | 40.0% | |
| GAGAACCAAGAACTACTACT+AGG | - | chr3.1:89510423-89510442 | MS.gene014482:CDS | 40.0% | |
| GAGTCACACAAGACATTTGA+TGG | - | chr3.1:89510545-89510564 | MS.gene014482:intron | 40.0% | |
| GCTCATTTCATTGTTGGATG+AGG | - | chr3.1:89511118-89511137 | MS.gene014482:CDS | 40.0% | |
| GGTTCATTAATGCAAGGGTA+CGG | - | chr3.1:89512499-89512518 | MS.gene014482:CDS | 40.0% | |
| TCTTCAAGAAGTGACTGTAC+TGG | + | chr3.1:89510924-89510943 | None:intergenic | 40.0% | |
| TTGTTTCATGGGAGTAGAAC+AGG | - | chr3.1:89511002-89511021 | MS.gene014482:CDS | 40.0% | |
| ! | GTTTCAGGTAACCCTCTAAT+AGG | + | chr3.1:89512052-89512071 | None:intergenic | 40.0% |
| ! | TGACTCTGAGAAGTTAATCC+TGG | - | chr3.1:89512225-89512244 | MS.gene014482:CDS | 40.0% |
| ! | TGCAAAGTGTTACACTGCTT+TGG | - | chr3.1:89511817-89511836 | MS.gene014482:intron | 40.0% |
| !! | GAAGTGACTGTACTGGTTTA+AGG | + | chr3.1:89510917-89510936 | None:intergenic | 40.0% |
| !! | TGTTGGTTCAGGTGTCAAAT+TGG | - | chr3.1:89512478-89512497 | MS.gene014482:CDS | 40.0% |
| AACCCAAGTTACTTCATGCC+TGG | - | chr3.1:89510690-89510709 | MS.gene014482:intron | 45.0% | |
| CAAGAACTACTACTAGGTGG+TGG | - | chr3.1:89510429-89510448 | MS.gene014482:CDS | 45.0% | |
| CACCACCTAGTAGTAGTTCT+TGG | + | chr3.1:89510431-89510450 | None:intergenic | 45.0% | |
| CTGTAGCAATTCTTCGTGCT+TGG | - | chr3.1:89512074-89512093 | MS.gene014482:CDS | 45.0% | |
| CTTGTTAGATTCTCCACCAC+AGG | + | chr3.1:89510747-89510766 | None:intergenic | 45.0% | |
| GAATCCTCAACTCTGCTTTG+AGG | + | chr3.1:89511049-89511068 | None:intergenic | 45.0% | |
| GACCAGGCATGAAGTAACTT+GGG | + | chr3.1:89510695-89510714 | None:intergenic | 45.0% | |
| GCATGTGAGAGCCTAAAGAA+AGG | + | chr3.1:89510623-89510642 | None:intergenic | 45.0% | |
| TAGGTCTCCAAACTTGTCGT+TGG | + | chr3.1:89512033-89512052 | None:intergenic | 45.0% | |
| TGACCAGGCATGAAGTAACT+TGG | + | chr3.1:89510696-89510715 | None:intergenic | 45.0% | |
| TTAAACCTGTTTGGGAAGCC+AGG | + | chr3.1:89512246-89512265 | None:intergenic | 45.0% | |
| TTAATCCTGGCTTCCCAAAC+AGG | - | chr3.1:89512238-89512257 | MS.gene014482:CDS | 45.0% | |
| TTACACTGCTTTGGCACTTC+AGG | - | chr3.1:89511826-89511845 | MS.gene014482:intron | 45.0% | |
| ! | AAAATTGTTAGCTGGCGGGT+TGG | + | chr3.1:89512586-89512605 | None:intergenic | 45.0% |
| ! | AAGCACTTGTGAGACGGATT+AGG | + | chr3.1:89511441-89511460 | None:intergenic | 45.0% |
| ! | TGAGCCTTGTAATCAACCTG+TGG | - | chr3.1:89510728-89510747 | MS.gene014482:intron | 45.0% |
| ! | TTAATGCAAGGGTACGGCTA+TGG | - | chr3.1:89512505-89512524 | MS.gene014482:CDS | 45.0% |
| ! | TTCAATGGTGGAAATGGAGG+TGG | - | chr3.1:89510777-89510796 | MS.gene014482:CDS | 45.0% |
| !! | TCCACCACAGGTTGATTACA+AGG | + | chr3.1:89510735-89510754 | None:intergenic | 45.0% |
| !! | TGCGCATTGATTGATGTCGA+TGG | - | chr3.1:89512371-89512390 | MS.gene014482:CDS | 45.0% |
| AAGGGAAGATGTCACTGTGG+AGG | - | chr3.1:89512611-89512630 | MS.gene014482:CDS | 50.0% | |
| CTGACCTCAAAGCAGAGTTG+AGG | - | chr3.1:89511042-89511061 | MS.gene014482:CDS | 50.0% | |
| GCCTTGTAATCAACCTGTGG+TGG | - | chr3.1:89510731-89510750 | MS.gene014482:intron | 50.0% | |
| GTCAAGGGAAGATGTCACTG+TGG | - | chr3.1:89512608-89512627 | MS.gene014482:CDS | 50.0% | |
| TCACGTGTCTGATCTTGACC+AGG | + | chr3.1:89510711-89510730 | None:intergenic | 50.0% | |
| TGGCACTTCAGGCAATGTCT+AGG | - | chr3.1:89511837-89511856 | MS.gene014482:intron | 50.0% | |
| ! | GGAGGTGGAACTTTTGCTTC+AGG | - | chr3.1:89510792-89510811 | MS.gene014482:intron | 50.0% |
| ! | GGGATAGACCTTGTTGTGTC+TGG | + | chr3.1:89510602-89510621 | None:intergenic | 50.0% |
| !! | CAACTCTGCTTTGAGGTCAG+AGG | + | chr3.1:89511042-89511061 | None:intergenic | 50.0% |
| !! | AGCTGGCGGGTTGGAGTCTT+CGG | + | chr3.1:89512577-89512596 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 89510387 | 89512638 | 89510387 | ID=MS.gene014482 |
| chr3.1 | mRNA | 89510387 | 89512638 | 89510387 | ID=MS.gene014482.t1;Parent=MS.gene014482 |
| chr3.1 | exon | 89511886 | 89512638 | 89511886 | ID=MS.gene014482.t1.exon1;Parent=MS.gene014482.t1 |
| chr3.1 | CDS | 89511886 | 89512638 | 89511886 | ID=cds.MS.gene014482.t1;Parent=MS.gene014482.t1 |
| chr3.1 | exon | 89510906 | 89511288 | 89510906 | ID=MS.gene014482.t1.exon2;Parent=MS.gene014482.t1 |
| chr3.1 | CDS | 89510906 | 89511288 | 89510906 | ID=cds.MS.gene014482.t1;Parent=MS.gene014482.t1 |
| chr3.1 | exon | 89510749 | 89510809 | 89510749 | ID=MS.gene014482.t1.exon3;Parent=MS.gene014482.t1 |
| chr3.1 | CDS | 89510749 | 89510809 | 89510749 | ID=cds.MS.gene014482.t1;Parent=MS.gene014482.t1 |
| chr3.1 | exon | 89510387 | 89510536 | 89510387 | ID=MS.gene014482.t1.exon4;Parent=MS.gene014482.t1 |
| chr3.1 | CDS | 89510387 | 89510536 | 89510387 | ID=cds.MS.gene014482.t1;Parent=MS.gene014482.t1 |
| Gene Sequence |
| Protein sequence |
