Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014537.t1 | XP_013462104.1 | 93.6 | 235 | 15 | 0 | 18 | 252 | 81 | 315 | 1.70E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014537.t1 | Q9LN63 | 58.5 | 246 | 80 | 8 | 25 | 252 | 94 | 335 | 6.6e-46 | 185.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014537.t1 | B7FHU2 | 93.6 | 235 | 15 | 0 | 18 | 252 | 81 | 315 | 1.3e-106 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014537.t1 | TF | BES1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014537.t1 | MTR_3g111680 | 98.298 | 235 | 4 | 0 | 18 | 252 | 81 | 315 | 4.84e-169 | 469 |
| MS.gene014537.t1 | MTR_5g019550 | 49.754 | 203 | 78 | 8 | 68 | 250 | 41 | 239 | 5.77e-47 | 156 |
| MS.gene014537.t1 | MTR_5g019550 | 49.754 | 203 | 78 | 8 | 68 | 250 | 125 | 323 | 5.98e-46 | 156 |
| MS.gene014537.t1 | MTR_1g021990 | 40.758 | 211 | 65 | 5 | 40 | 250 | 97 | 247 | 7.62e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014537.t1 | AT1G75080 | 59.426 | 244 | 77 | 9 | 25 | 250 | 95 | 334 | 5.52e-70 | 218 |
| MS.gene014537.t1 | AT1G75080 | 59.426 | 244 | 77 | 9 | 25 | 250 | 95 | 334 | 5.52e-70 | 218 |
| MS.gene014537.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene014537.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene014537.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene014537.t1 | AT1G19350 | 56.299 | 254 | 89 | 8 | 17 | 252 | 86 | 335 | 1.70e-68 | 214 |
| MS.gene014537.t1 | AT1G19350 | 58.130 | 246 | 81 | 8 | 25 | 252 | 116 | 357 | 1.92e-68 | 215 |
| MS.gene014537.t1 | AT3G50750 | 47.642 | 212 | 79 | 5 | 37 | 247 | 90 | 270 | 7.29e-35 | 126 |
| MS.gene014537.t1 | AT4G36780 | 51.000 | 100 | 47 | 1 | 49 | 146 | 112 | 211 | 3.40e-12 | 65.1 |
Find 90 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTGCTTTGTCCAATTTA+AGG | 0.128492 | 3.4:+96683270 | MS.gene014537:CDS |
| TGCAGGTCAAGCCTTGGGTT+GGG | 0.244939 | 3.4:+96684372 | MS.gene014537:CDS |
| TTATGCTGCTCATTAATTAC+AGG | 0.267539 | 3.4:-96684293 | None:intergenic |
| CATAGACACCTACCTTAAAT+TGG | 0.297351 | 3.4:-96683282 | None:intergenic |
| TGAAGTGGGCTTGGATGATT+TGG | 0.316017 | 3.4:+96684406 | MS.gene014537:CDS |
| AGGATTTCAGAGCCAGAGTT+TGG | 0.317045 | 3.4:+96684347 | MS.gene014537:CDS |
| CCATGTTGGAATCATGGGTT+TGG | 0.326849 | 3.4:-96684054 | None:intergenic |
| CATGTTGGAATCATGGGTTT+GGG | 0.346172 | 3.4:-96684053 | None:intergenic |
| GAATCAATTGCCAAAGCATC+AGG | 0.379878 | 3.4:+96684077 | MS.gene014537:CDS |
| GTGCAGGTCAAGCCTTGGGT+TGG | 0.384192 | 3.4:+96684371 | MS.gene014537:CDS |
| GGATTTCAGAGCCAGAGTTT+GGG | 0.385062 | 3.4:+96684348 | MS.gene014537:CDS |
| TTGGAGCTTACTCTTGGAAA+TGG | 0.386518 | 3.4:+96684425 | MS.gene014537:CDS |
| TGGGGTGCAGGTCAAGCCTT+GGG | 0.386786 | 3.4:+96684367 | MS.gene014537:CDS |
| TGATTCCCATGTTGGAATCA+TGG | 0.387349 | 3.4:-96684060 | None:intergenic |
| TTGGGGTGCAGGTCAAGCCT+TGG | 0.395856 | 3.4:+96684366 | MS.gene014537:CDS |
| AGAGCCAGAGTTTGGGGTGC+AGG | 0.400385 | 3.4:+96684355 | MS.gene014537:CDS |
| GAATAGTAGGTGGTGTATAA+AGG | 0.410535 | 3.4:-96684160 | None:intergenic |
| GATGATTTGGAGCTTACTCT+TGG | 0.411343 | 3.4:+96684419 | MS.gene014537:CDS |
| GGCGCAGAAGCTGCGAAGAA+AGG | 0.412024 | 3.4:-96684116 | None:intergenic |
| GTATCAGACTCATCACATTC+AGG | 0.421362 | 3.4:-96684182 | None:intergenic |
| CTTGAAGTTGGTGATGAGAT+AGG | 0.423563 | 3.4:-96684026 | None:intergenic |
| GGGAACATGCTGCGAGCATA+TGG | 0.428278 | 3.4:-96683951 | None:intergenic |
| AAGGATTCATGAAGTGGGCT+TGG | 0.442178 | 3.4:+96684397 | MS.gene014537:CDS |
| GCAGGTCAAGCCTTGGGTTG+GGG | 0.445549 | 3.4:+96684373 | MS.gene014537:CDS |
| GAAACACCAGGCGACGGTGC+AGG | 0.453828 | 3.4:+96683771 | MS.gene014537:CDS |
| GAAGGATGTCCCTGATGCTT+TGG | 0.455024 | 3.4:-96684087 | None:intergenic |
| TAGGTGGTGTATAAAGGTTC+CGG | 0.456174 | 3.4:-96684154 | None:intergenic |
| TCATCACATTCAGGAATAGT+AGG | 0.457941 | 3.4:-96684173 | None:intergenic |
| ATTTCCGAGCCCGTCTCGTA+TGG | 0.458323 | 3.4:+96683899 | MS.gene014537:CDS |
| AAGAGGAAGATGGGCTAACT+TGG | 0.459342 | 3.4:-96683875 | None:intergenic |
| AAATTTCCTGCACCGTCGCC+TGG | 0.461316 | 3.4:-96683777 | None:intergenic |
| CAAAGGTGGGAGAGACATGT+TGG | 0.476794 | 3.4:-96683973 | None:intergenic |
| TGAACACTGAACAGGGATCA+AGG | 0.477060 | 3.4:+96683745 | MS.gene014537:intron |
| GATTCCCATGTTGGAATCAT+GGG | 0.479782 | 3.4:-96684059 | None:intergenic |
| GATACTTCTACTGTTGAGTC+TGG | 0.480255 | 3.4:+96684200 | MS.gene014537:CDS |
| TAGCAGAAGCTGCAAAGGCT+TGG | 0.482094 | 3.4:-96684238 | None:intergenic |
| TCAAGCCTTGGGTTGGGGAA+AGG | 0.483086 | 3.4:+96684378 | MS.gene014537:CDS |
| GCATCCATACGAGACGGGCT+CGG | 0.486953 | 3.4:-96683903 | None:intergenic |
| TGGTAGGAAGGGATTGGACT+TGG | 0.487033 | 3.4:-96683855 | None:intergenic |
| AATGATGATGAAAGAGGACT+TGG | 0.489656 | 3.4:-96683831 | None:intergenic |
| TTGGCAATTGATTCCCATGT+TGG | 0.490224 | 3.4:-96684068 | None:intergenic |
| ATCTCCTGCATTCTGTTATG+AGG | 0.491673 | 3.4:-96684323 | None:intergenic |
| TTGACCTGCACCCCAAACTC+TGG | 0.493982 | 3.4:-96684359 | None:intergenic |
| GCGCAGAAGCTGCGAAGAAA+GGG | 0.494226 | 3.4:-96684115 | None:intergenic |
| AAAGGTGGGAGAGACATGTT+GGG | 0.494510 | 3.4:-96683972 | None:intergenic |
| GGTTTGGGATTTCTTGAAGT+TGG | 0.496117 | 3.4:-96684038 | None:intergenic |
| AGGCTTGGAAATTCAACCAT+TGG | 0.499150 | 3.4:-96684223 | None:intergenic |
| GGTTTCATAAAGTTCAATGT+AGG | 0.500604 | 3.4:-96684272 | None:intergenic |
| CTCGGAAATGAAGAGGAAGA+TGG | 0.501823 | 3.4:-96683885 | None:intergenic |
| GATGGGCTAACTTGGTAGGA+AGG | 0.510153 | 3.4:-96683867 | None:intergenic |
| TAAAAGTACCCTGCGATAAG+TGG | 0.514725 | 3.4:-96682940 | None:intergenic |
| TGCGAAGAAAGGGTGATTGA+AGG | 0.517777 | 3.4:-96684105 | None:intergenic |
| CTAACTTGGTAGGAAGGGAT+TGG | 0.532618 | 3.4:-96683861 | None:intergenic |
| TGATTTAGCAGAAGCTGCAA+AGG | 0.535526 | 3.4:-96684243 | None:intergenic |
| TGTTTGCATCCATACGAGAC+GGG | 0.538446 | 3.4:-96683908 | None:intergenic |
| CTGTTTGATATTCTCAAAGG+TGG | 0.543504 | 3.4:-96683987 | None:intergenic |
| TTCCGGTGGGATGGACTAGT+AGG | 0.544807 | 3.4:-96684137 | None:intergenic |
| GTATAAAGGTTCCGGTGGGA+TGG | 0.546631 | 3.4:-96684146 | None:intergenic |
| GATGAGATAGGTGGAGTCAC+AGG | 0.564281 | 3.4:-96684014 | None:intergenic |
| TGAATCCTTTCCCCAACCCA+AGG | 0.565111 | 3.4:-96684383 | None:intergenic |
| AAGATGGCACCACTTATCGC+AGG | 0.566281 | 3.4:+96682931 | None:intergenic |
| GGATCAAGGGCAGAAACACC+AGG | 0.568579 | 3.4:+96683759 | MS.gene014537:CDS |
| GGAAGATGGGCTAACTTGGT+AGG | 0.570068 | 3.4:-96683871 | None:intergenic |
| ATGGGCTAACTTGGTAGGAA+GGG | 0.578259 | 3.4:-96683866 | None:intergenic |
| CCAAACCCATGATTCCAACA+TGG | 0.578571 | 3.4:+96684054 | MS.gene014537:CDS |
| CTACTGTTGAGTCTGGCCAA+TGG | 0.579821 | 3.4:+96684207 | MS.gene014537:CDS |
| TTGTTTGCATCCATACGAGA+CGG | 0.580413 | 3.4:-96683909 | None:intergenic |
| CTTGGAAATGATGATGAAAG+AGG | 0.585676 | 3.4:-96683837 | None:intergenic |
| TATACTAGTCTTCATTAACT+AGG | 0.587526 | 3.4:-96684455 | None:intergenic |
| TCGGAAATGAAGAGGAAGAT+GGG | 0.591259 | 3.4:-96683884 | None:intergenic |
| GAACACTGAACAGGGATCAA+GGG | 0.592233 | 3.4:+96683746 | MS.gene014537:intron |
| GCTGCCTCATAACAGAATGC+AGG | 0.597111 | 3.4:+96684319 | MS.gene014537:CDS |
| GATTTCAGAGCCAGAGTTTG+GGG | 0.597331 | 3.4:+96684349 | MS.gene014537:CDS |
| GTGGTGTATAAAGGTTCCGG+TGG | 0.599334 | 3.4:-96684151 | None:intergenic |
| TGGGGAAAGGATTCATGAAG+TGG | 0.599526 | 3.4:+96684391 | MS.gene014537:CDS |
| GCGCTGTTTGATATTCTCAA+AGG | 0.602416 | 3.4:-96683990 | None:intergenic |
| CGCCTACTAGTCCATCCCAC+CGG | 0.608831 | 3.4:+96684135 | MS.gene014537:CDS |
| TGTTTGATATTCTCAAAGGT+GGG | 0.611100 | 3.4:-96683986 | None:intergenic |
| ATAACAGAATGCAGGAGATG+AGG | 0.612424 | 3.4:+96684327 | MS.gene014537:CDS |
| AGGGCAGAAACACCAGGCGA+CGG | 0.612624 | 3.4:+96683765 | MS.gene014537:CDS |
| CAAACCCATGATTCCAACAT+GGG | 0.619565 | 3.4:+96684055 | MS.gene014537:CDS |
| AGACGGGCTCGGAAATGAAG+AGG | 0.620195 | 3.4:-96683892 | None:intergenic |
| GCTTACTCTTGGAAATGGAA+AGG | 0.624748 | 3.4:+96684430 | MS.gene014537:CDS |
| GGGGAAAGGATTCATGAAGT+GGG | 0.628370 | 3.4:+96684392 | MS.gene014537:CDS |
| AATCAATTGCCAAAGCATCA+GGG | 0.645925 | 3.4:+96684078 | MS.gene014537:CDS |
| TCACATTCAGGAATAGTAGG+TGG | 0.669687 | 3.4:-96684170 | None:intergenic |
| AGATGGCACCACTTATCGCA+GGG | 0.680637 | 3.4:+96682932 | None:intergenic |
| TGGTGTATAAAGGTTCCGGT+GGG | 0.684999 | 3.4:-96684150 | None:intergenic |
| GAAGTTGGTGATGAGATAGG+TGG | 0.719041 | 3.4:-96684023 | None:intergenic |
| AAGGTGGGAGAGACATGTTG+GGG | 0.734444 | 3.4:-96683971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAAAAATAAGTTCATT+AGG | - | chr3.4:96683602-96683621 | None:intergenic | 15.0% |
| !! | TTGAATAAACAACTTAATTA+AGG | - | chr3.4:96683669-96683688 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTGAAGAAAGA+TGG | - | chr3.4:96683387-96683406 | None:intergenic | 15.0% |
| !! | AATCTGAGTCAAATTAATTT+CGG | + | chr3.4:96683157-96683176 | MS.gene014537:intron | 20.0% |
| !!! | AGTTTTGATGAAATTTTGTT+TGG | + | chr3.4:96683093-96683112 | MS.gene014537:intron | 20.0% |
| ! | AACTAGTAGTTGATTAATTG+AGG | - | chr3.4:96683194-96683213 | None:intergenic | 25.0% |
| ! | TGAACAATCTAATCTGATTT+GGG | + | chr3.4:96683458-96683477 | MS.gene014537:intron | 25.0% |
| ! | TTGAACAATCTAATCTGATT+TGG | + | chr3.4:96683457-96683476 | MS.gene014537:intron | 25.0% |
| !! | TATCTGATAAGAATCTGTTT+TGG | + | chr3.4:96683698-96683717 | MS.gene014537:intron | 25.0% |
| !!! | TGATGAAATTTTGTTTGGTT+TGG | + | chr3.4:96683098-96683117 | MS.gene014537:intron | 25.0% |
| !!! | TTGGATTTTGAGATGAAAAT+GGG | - | chr3.4:96683815-96683834 | None:intergenic | 25.0% |
| AAACAATGGGTAATCCTAAT+TGG | + | chr3.4:96683421-96683440 | MS.gene014537:intron | 30.0% | |
| GATTCAAATCTTACTGCAAT+TGG | + | chr3.4:96683048-96683067 | MS.gene014537:intron | 30.0% | |
| GGTTTCATAAAGTTCAATGT+AGG | - | chr3.4:96684275-96684294 | None:intergenic | 30.0% | |
| TCCAAAAAAGAAAAGTGAGA+GGG | - | chr3.4:96682969-96682988 | None:intergenic | 30.0% | |
| TGATAGCATTTCATTTCACA+CGG | - | chr3.4:96683344-96683363 | None:intergenic | 30.0% | |
| TGTTTGATATTCTCAAAGGT+GGG | - | chr3.4:96683989-96684008 | None:intergenic | 30.0% | |
| TTATGCTGCTCATTAATTAC+AGG | - | chr3.4:96684296-96684315 | None:intergenic | 30.0% | |
| TTCCTTTGACTGAAAATACA+AGG | - | chr3.4:96683131-96683150 | None:intergenic | 30.0% | |
| !!! | CTTGGATTTTGAGATGAAAA+TGG | - | chr3.4:96683816-96683835 | None:intergenic | 30.0% |
| AATCAAACACAGCACCAATT+AGG | - | chr3.4:96683438-96683457 | None:intergenic | 35.0% | |
| ATCAGTGATGTGTGACTATT+TGG | + | chr3.4:96683512-96683531 | MS.gene014537:intron | 35.0% | |
| CAAATCTTACTGCAATTGGT+TGG | + | chr3.4:96683052-96683071 | MS.gene014537:intron | 35.0% | |
| CATAGACACCTACCTTAAAT+TGG | - | chr3.4:96683285-96683304 | None:intergenic | 35.0% | |
| CTCCAAAAAAGAAAAGTGAG+AGG | - | chr3.4:96682970-96682989 | None:intergenic | 35.0% | |
| CTGTTTGATATTCTCAAAGG+TGG | - | chr3.4:96683990-96684009 | None:intergenic | 35.0% | |
| GAATAGTAGGTGGTGTATAA+AGG | - | chr3.4:96684163-96684182 | None:intergenic | 35.0% | |
| TCATCACATTCAGGAATAGT+AGG | - | chr3.4:96684176-96684195 | None:intergenic | 35.0% | |
| TCTTCATATCTACGTACTGT+TGG | + | chr3.4:96683026-96683045 | MS.gene014537:intron | 35.0% | |
| TTGTGAATGAACACTGAACA+GGG | + | chr3.4:96683738-96683757 | MS.gene014537:intron | 35.0% | |
| TTTGTGAATGAACACTGAAC+AGG | + | chr3.4:96683737-96683756 | MS.gene014537:intron | 35.0% | |
| ! | AATCAATTGCCAAAGCATCA+GGG | + | chr3.4:96684078-96684097 | MS.gene014537:CDS | 35.0% |
| ! | AATGATGATGAAAGAGGACT+TGG | - | chr3.4:96683834-96683853 | None:intergenic | 35.0% |
| ! | ATTTTCCAATGTGGCATAGT+TGG | - | chr3.4:96683318-96683337 | None:intergenic | 35.0% |
| ! | CTTGGAAATGATGATGAAAG+AGG | - | chr3.4:96683840-96683859 | None:intergenic | 35.0% |
| ! | TGCCTTGTATTTTCAGTCAA+AGG | + | chr3.4:96683126-96683145 | MS.gene014537:intron | 35.0% |
| ! | TGCTTTGTCCAATTTAAGGT+AGG | + | chr3.4:96683274-96683293 | MS.gene014537:intron | 35.0% |
| !! | TCCCTCTCACTTTTCTTTTT+TGG | + | chr3.4:96682965-96682984 | MS.gene014537:intron | 35.0% |
| !! | TTGCTGCTTTGTCCAATTTA+AGG | + | chr3.4:96683270-96683289 | MS.gene014537:CDS | 35.0% |
| AGGCTTGGAAATTCAACCAT+TGG | - | chr3.4:96684226-96684245 | None:intergenic | 40.0% | |
| ATAACAGAATGCAGGAGATG+AGG | + | chr3.4:96684327-96684346 | MS.gene014537:CDS | 40.0% | |
| ATCTCCTGCATTCTGTTATG+AGG | - | chr3.4:96684326-96684345 | None:intergenic | 40.0% | |
| CAAACCCATGATTCCAACAT+GGG | + | chr3.4:96684055-96684074 | MS.gene014537:CDS | 40.0% | |
| CATGTTGGAATCATGGGTTT+GGG | - | chr3.4:96684056-96684075 | None:intergenic | 40.0% | |
| GATACTTCTACTGTTGAGTC+TGG | + | chr3.4:96684200-96684219 | MS.gene014537:CDS | 40.0% | |
| GATTCCCATGTTGGAATCAT+GGG | - | chr3.4:96684062-96684081 | None:intergenic | 40.0% | |
| GCGCTGTTTGATATTCTCAA+AGG | - | chr3.4:96683993-96684012 | None:intergenic | 40.0% | |
| GCTTACTCTTGGAAATGGAA+AGG | + | chr3.4:96684430-96684449 | MS.gene014537:CDS | 40.0% | |
| GTATCAGACTCATCACATTC+AGG | - | chr3.4:96684185-96684204 | None:intergenic | 40.0% | |
| TAGGTGGTGTATAAAGGTTC+CGG | - | chr3.4:96684157-96684176 | None:intergenic | 40.0% | |
| TCACATTCAGGAATAGTAGG+TGG | - | chr3.4:96684173-96684192 | None:intergenic | 40.0% | |
| TCGGAAATGAAGAGGAAGAT+GGG | - | chr3.4:96683887-96683906 | None:intergenic | 40.0% | |
| TGATTCCCATGTTGGAATCA+TGG | - | chr3.4:96684063-96684082 | None:intergenic | 40.0% | |
| TGATTTAGCAGAAGCTGCAA+AGG | - | chr3.4:96684246-96684265 | None:intergenic | 40.0% | |
| TTGGAGCTTACTCTTGGAAA+TGG | + | chr3.4:96684425-96684444 | MS.gene014537:CDS | 40.0% | |
| TTGTTTGCATCCATACGAGA+CGG | - | chr3.4:96683912-96683931 | None:intergenic | 40.0% | |
| ! | ACACGGAAGATTTTCCAATG+TGG | - | chr3.4:96683327-96683346 | None:intergenic | 40.0% |
| ! | GAATCAATTGCCAAAGCATC+AGG | + | chr3.4:96684077-96684096 | MS.gene014537:CDS | 40.0% |
| ! | GATGATTTGGAGCTTACTCT+TGG | + | chr3.4:96684419-96684438 | MS.gene014537:CDS | 40.0% |
| ! | GGTTTGGGATTTCTTGAAGT+TGG | - | chr3.4:96684041-96684060 | None:intergenic | 40.0% |
| ! | TTGGCAATTGATTCCCATGT+TGG | - | chr3.4:96684071-96684090 | None:intergenic | 40.0% |
| !! | CTTGAAGTTGGTGATGAGAT+AGG | - | chr3.4:96684029-96684048 | None:intergenic | 40.0% |
| !! | TAAAAGTACCCTGCGATAAG+TGG | - | chr3.4:96682943-96682962 | None:intergenic | 40.0% |
| AAAGGTGGGAGAGACATGTT+GGG | - | chr3.4:96683975-96683994 | None:intergenic | 45.0% | |
| AGGATTTCAGAGCCAGAGTT+TGG | + | chr3.4:96684347-96684366 | MS.gene014537:CDS | 45.0% | |
| CCAAACCCATGATTCCAACA+TGG | + | chr3.4:96684054-96684073 | MS.gene014537:CDS | 45.0% | |
| CCATGTTGGAATCATGGGTT+TGG | - | chr3.4:96684057-96684076 | None:intergenic | 45.0% | |
| CTAACTTGGTAGGAAGGGAT+TGG | - | chr3.4:96683864-96683883 | None:intergenic | 45.0% | |
| CTCGGAAATGAAGAGGAAGA+TGG | - | chr3.4:96683888-96683907 | None:intergenic | 45.0% | |
| GAACACTGAACAGGGATCAA+GGG | + | chr3.4:96683746-96683765 | MS.gene014537:intron | 45.0% | |
| GATTTCAGAGCCAGAGTTTG+GGG | + | chr3.4:96684349-96684368 | MS.gene014537:CDS | 45.0% | |
| GGATTTCAGAGCCAGAGTTT+GGG | + | chr3.4:96684348-96684367 | MS.gene014537:CDS | 45.0% | |
| GGGGAAAGGATTCATGAAGT+GGG | + | chr3.4:96684392-96684411 | MS.gene014537:CDS | 45.0% | |
| TCCAATGTGGCATAGTTGGA+TGG | - | chr3.4:96683314-96683333 | None:intergenic | 45.0% | |
| TCCATCCAACTATGCCACAT+TGG | + | chr3.4:96683310-96683329 | MS.gene014537:intron | 45.0% | |
| TGAACACTGAACAGGGATCA+AGG | + | chr3.4:96683745-96683764 | MS.gene014537:intron | 45.0% | |
| TGCGAAGAAAGGGTGATTGA+AGG | - | chr3.4:96684108-96684127 | None:intergenic | 45.0% | |
| TGGGGAAAGGATTCATGAAG+TGG | + | chr3.4:96684391-96684410 | MS.gene014537:CDS | 45.0% | |
| TGGTGTATAAAGGTTCCGGT+GGG | - | chr3.4:96684153-96684172 | None:intergenic | 45.0% | |
| TGTTTGCATCCATACGAGAC+GGG | - | chr3.4:96683911-96683930 | None:intergenic | 45.0% | |
| ! | AAGGATTCATGAAGTGGGCT+TGG | + | chr3.4:96684397-96684416 | MS.gene014537:CDS | 45.0% |
| ! | ATGGGCTAACTTGGTAGGAA+GGG | - | chr3.4:96683869-96683888 | None:intergenic | 45.0% |
| ! | TGAAGTGGGCTTGGATGATT+TGG | + | chr3.4:96684406-96684425 | MS.gene014537:CDS | 45.0% |
| !! | AAGAGGAAGATGGGCTAACT+TGG | - | chr3.4:96683878-96683897 | None:intergenic | 45.0% |
| !! | GAAGTTGGTGATGAGATAGG+TGG | - | chr3.4:96684026-96684045 | None:intergenic | 45.0% |
| !! | AATAAAAAATAAAAAAACAA+TGG | + | chr3.4:96683407-96683426 | MS.gene014537:intron | 5.0% |
| !! | ATAAAAAATAAAAAAACAAT+GGG | + | chr3.4:96683408-96683427 | MS.gene014537:intron | 5.0% |
| AAGGTGGGAGAGACATGTTG+GGG | - | chr3.4:96683974-96683993 | None:intergenic | 50.0% | |
| CAAAGGTGGGAGAGACATGT+TGG | - | chr3.4:96683976-96683995 | None:intergenic | 50.0% | |
| CTACTGTTGAGTCTGGCCAA+TGG | + | chr3.4:96684207-96684226 | MS.gene014537:CDS | 50.0% | |
| GAAGGATGTCCCTGATGCTT+TGG | - | chr3.4:96684090-96684109 | None:intergenic | 50.0% | |
| GATGAGATAGGTGGAGTCAC+AGG | - | chr3.4:96684017-96684036 | None:intergenic | 50.0% | |
| GCTGCCTCATAACAGAATGC+AGG | + | chr3.4:96684319-96684338 | MS.gene014537:CDS | 50.0% | |
| GTATAAAGGTTCCGGTGGGA+TGG | - | chr3.4:96684149-96684168 | None:intergenic | 50.0% | |
| GTGGTGTATAAAGGTTCCGG+TGG | - | chr3.4:96684154-96684173 | None:intergenic | 50.0% | |
| TAGCAGAAGCTGCAAAGGCT+TGG | - | chr3.4:96684241-96684260 | None:intergenic | 50.0% | |
| TGAATCCTTTCCCCAACCCA+AGG | - | chr3.4:96684386-96684405 | None:intergenic | 50.0% | |
| TGGTAGGAAGGGATTGGACT+TGG | - | chr3.4:96683858-96683877 | None:intergenic | 50.0% | |
| !! | GATGGGCTAACTTGGTAGGA+AGG | - | chr3.4:96683870-96683889 | None:intergenic | 50.0% |
| !! | GGAAGATGGGCTAACTTGGT+AGG | - | chr3.4:96683874-96683893 | None:intergenic | 50.0% |
| AAATTTCCTGCACCGTCGCC+TGG | - | chr3.4:96683780-96683799 | None:intergenic | 55.0% | |
| ATTTCCGAGCCCGTCTCGTA+TGG | + | chr3.4:96683899-96683918 | MS.gene014537:CDS | 55.0% | |
| GCGCAGAAGCTGCGAAGAAA+GGG | - | chr3.4:96684118-96684137 | None:intergenic | 55.0% | |
| GGATCAAGGGCAGAAACACC+AGG | + | chr3.4:96683759-96683778 | MS.gene014537:CDS | 55.0% | |
| GGGAACATGCTGCGAGCATA+TGG | - | chr3.4:96683954-96683973 | None:intergenic | 55.0% | |
| TGCAGGTCAAGCCTTGGGTT+GGG | + | chr3.4:96684372-96684391 | MS.gene014537:CDS | 55.0% | |
| TTGACCTGCACCCCAAACTC+TGG | - | chr3.4:96684362-96684381 | None:intergenic | 55.0% | |
| ! | AGACGGGCTCGGAAATGAAG+AGG | - | chr3.4:96683895-96683914 | None:intergenic | 55.0% |
| !! | TCAAGCCTTGGGTTGGGGAA+AGG | + | chr3.4:96684378-96684397 | MS.gene014537:CDS | 55.0% |
| !! | TTCCGGTGGGATGGACTAGT+AGG | - | chr3.4:96684140-96684159 | None:intergenic | 55.0% |
| AGGGCAGAAACACCAGGCGA+CGG | + | chr3.4:96683765-96683784 | MS.gene014537:CDS | 60.0% | |
| CGCCTACTAGTCCATCCCAC+CGG | + | chr3.4:96684135-96684154 | MS.gene014537:CDS | 60.0% | |
| GGCGCAGAAGCTGCGAAGAA+AGG | - | chr3.4:96684119-96684138 | None:intergenic | 60.0% | |
| GTGCAGGTCAAGCCTTGGGT+TGG | + | chr3.4:96684371-96684390 | MS.gene014537:CDS | 60.0% | |
| TGGGGTGCAGGTCAAGCCTT+GGG | + | chr3.4:96684367-96684386 | MS.gene014537:CDS | 60.0% | |
| TTGGGGTGCAGGTCAAGCCT+TGG | + | chr3.4:96684366-96684385 | MS.gene014537:CDS | 60.0% | |
| ! | AGAGCCAGAGTTTGGGGTGC+AGG | + | chr3.4:96684355-96684374 | MS.gene014537:CDS | 60.0% |
| ! | GCAGGTCAAGCCTTGGGTTG+GGG | + | chr3.4:96684373-96684392 | MS.gene014537:CDS | 60.0% |
| ! | GCATCCATACGAGACGGGCT+CGG | - | chr3.4:96683906-96683925 | None:intergenic | 60.0% |
| GAAACACCAGGCGACGGTGC+AGG | + | chr3.4:96683771-96683790 | MS.gene014537:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96682934 | 96684463 | 96682934 | ID=MS.gene014537 |
| chr3.4 | mRNA | 96682934 | 96684463 | 96682934 | ID=MS.gene014537.t1;Parent=MS.gene014537 |
| chr3.4 | exon | 96682934 | 96682953 | 96682934 | ID=MS.gene014537.t1.exon1;Parent=MS.gene014537.t1 |
| chr3.4 | CDS | 96682934 | 96682953 | 96682934 | ID=cds.MS.gene014537.t1;Parent=MS.gene014537.t1 |
| chr3.4 | exon | 96683258 | 96683291 | 96683258 | ID=MS.gene014537.t1.exon2;Parent=MS.gene014537.t1 |
| chr3.4 | CDS | 96683258 | 96683291 | 96683258 | ID=cds.MS.gene014537.t1;Parent=MS.gene014537.t1 |
| chr3.4 | exon | 96683759 | 96684463 | 96683759 | ID=MS.gene014537.t1.exon3;Parent=MS.gene014537.t1 |
| chr3.4 | CDS | 96683759 | 96684463 | 96683759 | ID=cds.MS.gene014537.t1;Parent=MS.gene014537.t1 |
| Gene Sequence |
| Protein sequence |
