Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014564.t1 | XP_003603699.1 | 87.2 | 337 | 42 | 1 | 1 | 336 | 1 | 337 | 2.10E-155 | 558.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014564.t1 | Q9LSL1 | 65.2 | 207 | 61 | 4 | 141 | 336 | 145 | 351 | 2.1e-63 | 244.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014564.t1 | G7J450 | 87.2 | 337 | 42 | 1 | 1 | 336 | 1 | 337 | 1.5e-155 | 558.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014564.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014564.t1 | MTR_3g111290 | 94.659 | 337 | 17 | 1 | 1 | 336 | 1 | 337 | 0.0 | 635 |
| MS.gene014564.t1 | MTR_5g030770 | 49.275 | 345 | 146 | 11 | 1 | 336 | 1 | 325 | 5.19e-88 | 267 |
| MS.gene014564.t1 | MTR_5g030770 | 47.826 | 345 | 145 | 12 | 1 | 336 | 1 | 319 | 7.21e-81 | 249 |
| MS.gene014564.t1 | MTR_7g083900 | 46.316 | 190 | 76 | 4 | 170 | 333 | 284 | 473 | 4.91e-44 | 157 |
| MS.gene014564.t1 | MTR_7g083900 | 46.073 | 191 | 76 | 5 | 170 | 333 | 284 | 474 | 9.29e-43 | 154 |
| MS.gene014564.t1 | MTR_3g498695 | 45.078 | 193 | 82 | 3 | 165 | 333 | 291 | 483 | 1.12e-42 | 154 |
| MS.gene014564.t1 | MTR_3g498695 | 45.408 | 196 | 76 | 5 | 165 | 333 | 291 | 482 | 9.86e-42 | 151 |
| MS.gene014564.t1 | MTR_3g030700 | 41.711 | 187 | 90 | 5 | 161 | 328 | 185 | 371 | 2.13e-36 | 135 |
| MS.gene014564.t1 | MTR_7g076840 | 38.562 | 306 | 99 | 14 | 8 | 308 | 5 | 226 | 4.21e-34 | 125 |
| MS.gene014564.t1 | MTR_3g104100 | 36.410 | 195 | 100 | 6 | 161 | 331 | 184 | 378 | 2.51e-31 | 121 |
| MS.gene014564.t1 | MTR_2g081040 | 37.097 | 186 | 93 | 5 | 170 | 331 | 175 | 360 | 1.03e-30 | 119 |
| MS.gene014564.t1 | MTR_1g112680 | 53.425 | 73 | 34 | 0 | 160 | 232 | 305 | 377 | 4.79e-18 | 85.1 |
| MS.gene014564.t1 | MTR_1g072320 | 32.692 | 156 | 76 | 5 | 163 | 289 | 454 | 609 | 3.14e-14 | 73.9 |
| MS.gene014564.t1 | MTR_2g038040 | 52.941 | 68 | 31 | 1 | 168 | 234 | 48 | 115 | 8.09e-14 | 70.5 |
| MS.gene014564.t1 | MTR_5g014640 | 28.571 | 175 | 108 | 4 | 168 | 326 | 150 | 323 | 2.63e-13 | 70.1 |
| MS.gene014564.t1 | MTR_4g092700 | 26.590 | 173 | 107 | 5 | 170 | 325 | 156 | 325 | 1.41e-12 | 68.2 |
| MS.gene014564.t1 | MTR_8g024770 | 34.706 | 170 | 82 | 9 | 158 | 302 | 262 | 427 | 1.76e-12 | 68.2 |
| MS.gene014564.t1 | MTR_8g027495 | 27.329 | 161 | 106 | 4 | 169 | 318 | 455 | 615 | 1.79e-12 | 68.6 |
| MS.gene014564.t1 | MTR_8g024790 | 31.579 | 171 | 85 | 8 | 158 | 303 | 274 | 437 | 1.83e-12 | 68.2 |
| MS.gene014564.t1 | MTR_4g057270 | 45.312 | 64 | 35 | 0 | 165 | 228 | 142 | 205 | 2.86e-12 | 67.0 |
| MS.gene014564.t1 | MTR_2g084280 | 30.128 | 156 | 90 | 5 | 171 | 308 | 132 | 286 | 3.25e-12 | 66.6 |
| MS.gene014564.t1 | MTR_2g010450 | 26.738 | 187 | 114 | 6 | 161 | 329 | 167 | 348 | 4.48e-12 | 66.6 |
| MS.gene014564.t1 | MTR_5g030430 | 28.814 | 177 | 95 | 6 | 159 | 306 | 478 | 652 | 2.41e-11 | 65.1 |
| MS.gene014564.t1 | MTR_7g117670 | 28.834 | 163 | 101 | 5 | 169 | 318 | 399 | 559 | 3.55e-11 | 64.7 |
| MS.gene014564.t1 | MTR_8g064700 | 30.872 | 149 | 80 | 4 | 171 | 298 | 243 | 389 | 3.65e-11 | 64.3 |
| MS.gene014564.t1 | MTR_7g096350 | 42.169 | 83 | 43 | 2 | 156 | 233 | 334 | 416 | 4.87e-11 | 63.9 |
| MS.gene014564.t1 | MTR_8g067280 | 38.372 | 86 | 50 | 2 | 142 | 225 | 431 | 515 | 5.47e-11 | 63.9 |
| MS.gene014564.t1 | MTR_6g047570 | 29.004 | 231 | 113 | 10 | 1 | 229 | 35 | 216 | 5.73e-11 | 63.2 |
| MS.gene014564.t1 | MTR_2g104560 | 26.531 | 196 | 125 | 6 | 144 | 325 | 29 | 219 | 7.69e-11 | 61.6 |
| MS.gene014564.t1 | MTR_4g091990 | 31.061 | 132 | 76 | 4 | 171 | 297 | 44 | 165 | 9.09e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014564.t1 | AT5G65640 | 66.184 | 207 | 59 | 4 | 139 | 336 | 147 | 351 | 2.71e-79 | 246 |
| MS.gene014564.t1 | AT5G10570 | 64.286 | 182 | 57 | 3 | 159 | 336 | 138 | 315 | 7.64e-71 | 223 |
| MS.gene014564.t1 | AT1G12860 | 46.739 | 184 | 78 | 3 | 170 | 333 | 265 | 448 | 2.41e-43 | 155 |
| MS.gene014564.t1 | AT3G26744 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 1.93e-40 | 148 |
| MS.gene014564.t1 | AT3G26744 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 1.93e-40 | 148 |
| MS.gene014564.t1 | AT3G26744 | 45.026 | 191 | 75 | 5 | 170 | 333 | 305 | 492 | 1.93e-40 | 148 |
| MS.gene014564.t1 | AT1G12860 | 50.327 | 153 | 56 | 3 | 170 | 302 | 265 | 417 | 2.26e-38 | 141 |
| MS.gene014564.t1 | AT3G26744 | 48.125 | 160 | 53 | 5 | 170 | 302 | 305 | 461 | 3.74e-35 | 134 |
| MS.gene014564.t1 | AT5G65640 | 62.602 | 123 | 36 | 3 | 139 | 253 | 147 | 267 | 2.88e-31 | 119 |
| MS.gene014564.t1 | AT2G16910 | 35.484 | 155 | 64 | 4 | 171 | 289 | 313 | 467 | 5.85e-19 | 88.2 |
| MS.gene014564.t1 | AT4G29930 | 33.775 | 151 | 78 | 5 | 171 | 307 | 53 | 195 | 1.85e-15 | 75.1 |
| MS.gene014564.t1 | AT4G29930 | 33.333 | 144 | 85 | 5 | 171 | 307 | 53 | 192 | 2.32e-15 | 74.7 |
| MS.gene014564.t1 | AT4G29930 | 33.333 | 144 | 85 | 5 | 171 | 307 | 53 | 192 | 4.51e-15 | 73.9 |
| MS.gene014564.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 2.76e-14 | 70.9 |
| MS.gene014564.t1 | AT4G09820 | 30.409 | 171 | 103 | 5 | 161 | 327 | 352 | 510 | 3.08e-14 | 73.9 |
| MS.gene014564.t1 | AT4G17880 | 33.129 | 163 | 89 | 6 | 159 | 303 | 401 | 561 | 4.63e-14 | 73.6 |
| MS.gene014564.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 9.31e-14 | 70.5 |
| MS.gene014564.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 1.20e-13 | 70.5 |
| MS.gene014564.t1 | AT4G29930 | 50.000 | 66 | 32 | 1 | 171 | 235 | 53 | 118 | 1.20e-13 | 70.5 |
| MS.gene014564.t1 | AT2G22760 | 26.111 | 180 | 112 | 4 | 153 | 312 | 98 | 276 | 1.68e-13 | 70.5 |
| MS.gene014564.t1 | AT2G22760 | 26.437 | 174 | 107 | 4 | 153 | 306 | 98 | 270 | 4.15e-13 | 69.3 |
| MS.gene014564.t1 | AT5G46830 | 33.557 | 149 | 83 | 3 | 169 | 303 | 340 | 486 | 1.33e-12 | 68.9 |
| MS.gene014564.t1 | AT2G46510 | 33.884 | 121 | 63 | 4 | 148 | 257 | 361 | 475 | 2.16e-12 | 68.2 |
| MS.gene014564.t1 | AT1G32640 | 31.847 | 157 | 78 | 5 | 169 | 303 | 449 | 598 | 3.45e-12 | 67.8 |
| MS.gene014564.t1 | AT4G00870 | 39.535 | 86 | 40 | 2 | 156 | 229 | 221 | 306 | 3.43e-11 | 64.3 |
| MS.gene014564.t1 | AT2G28160 | 40.909 | 66 | 39 | 0 | 163 | 228 | 122 | 187 | 3.90e-11 | 63.5 |
| MS.gene014564.t1 | AT2G28160 | 40.909 | 66 | 39 | 0 | 163 | 228 | 122 | 187 | 4.45e-11 | 63.5 |
| MS.gene014564.t1 | AT5G46760 | 42.466 | 73 | 40 | 1 | 159 | 229 | 400 | 472 | 9.57e-11 | 63.2 |
Find 56 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAAGAGCTTCAGAATT+TGG | 0.194817 | 3.3:-91973042 | MS.gene014564:CDS |
| TTGAAAACTACTGGCATTTC+AGG | 0.202127 | 3.3:+91972981 | None:intergenic |
| GTACCTACCTTGCTTATCTT+AGG | 0.245588 | 3.3:+91972828 | None:intergenic |
| GCAACAGGAATTGGAGAAAA+AGG | 0.270835 | 3.3:-91971912 | MS.gene014564:intron |
| AGATTTCATTGAGGAATTAA+TGG | 0.282846 | 3.3:-91973396 | MS.gene014564:CDS |
| TCTTCAACACCACAGATTCT+TGG | 0.321672 | 3.3:-91973155 | MS.gene014564:CDS |
| AACACTTTCAATGAAATCTA+TGG | 0.323772 | 3.3:-91973194 | MS.gene014564:CDS |
| ATACCCTGCACTTCTGAATA+AGG | 0.328974 | 3.3:+91971859 | None:intergenic |
| TCTCTTTCGTCTTCTCCTTT+CGG | 0.335778 | 3.3:+91972887 | None:intergenic |
| CAAGAAGAGTTTGGAAGATA+TGG | 0.342140 | 3.3:+91973263 | None:intergenic |
| AAGTCTTCTTGAGAAATAAA+TGG | 0.343736 | 3.3:+91973104 | None:intergenic |
| GCTGCAAACAGCATGTAAAA+TGG | 0.376870 | 3.3:-91973018 | MS.gene014564:CDS |
| TGTTGACTACAAGAAGAGTT+TGG | 0.397391 | 3.3:+91973254 | None:intergenic |
| GGCATTTCAGGTGATTGTAT+TGG | 0.405729 | 3.3:+91972993 | None:intergenic |
| GTCCTTGAAGTTTCTTCGAT+CGG | 0.408164 | 3.3:+91972931 | None:intergenic |
| TTGATCTTCTTCTCCCATCA+TGG | 0.410222 | 3.3:+91973073 | None:intergenic |
| TACCTACCTTGCTTATCTTA+GGG | 0.413903 | 3.3:+91972829 | None:intergenic |
| CACAATGCAGGCTTCTTGCT+CGG | 0.422339 | 3.3:-91972305 | MS.gene014564:CDS |
| AGGGTTGAAATTTGTTGTGC+AGG | 0.424911 | 3.3:-91972418 | MS.gene014564:CDS |
| ATTTGTTGTGCAGGGAAGCC+AGG | 0.426657 | 3.3:-91972409 | MS.gene014564:CDS |
| CTTTGTAGTTTGAGGTAGAG+AGG | 0.429500 | 3.3:-91972453 | MS.gene014564:intron |
| TCATTGTTGTTATAGCTTTG+AGG | 0.442557 | 3.3:+91973227 | None:intergenic |
| TTTCAATGATTTCACAATGC+AGG | 0.451446 | 3.3:-91972317 | MS.gene014564:CDS |
| TTTCAACACTGGTAAGGGTA+TGG | 0.466525 | 3.3:-91972964 | MS.gene014564:CDS |
| CAAGCCTTATTCAGAAGTGC+AGG | 0.468092 | 3.3:-91971863 | MS.gene014564:CDS |
| AACCGATCGAAGAAACTTCA+AGG | 0.484937 | 3.3:-91972933 | MS.gene014564:CDS |
| TGTTGAAGATTCATCAAGTA+AGG | 0.499336 | 3.3:+91973169 | None:intergenic |
| TTACCAGTGTTGAAAACTAC+TGG | 0.522074 | 3.3:+91972972 | None:intergenic |
| GACTTTCCACTGTCCATGAT+GGG | 0.524863 | 3.3:-91973086 | MS.gene014564:CDS |
| GGGTTGAAATTTGTTGTGCA+GGG | 0.525508 | 3.3:-91972417 | MS.gene014564:CDS |
| ACAGCCTTCGAAGAATCTAA+TGG | 0.532414 | 3.3:-91972910 | MS.gene014564:CDS |
| ACATAGATGGAGTTCTATGA+TGG | 0.535755 | 3.3:-91973419 | None:intergenic |
| AGACTTTCCACTGTCCATGA+TGG | 0.536479 | 3.3:-91973087 | MS.gene014564:CDS |
| ATGGACAGAACAGCTATACT+TGG | 0.546390 | 3.3:-91972705 | MS.gene014564:CDS |
| TTATTCAGAAGTGCAGGGTA+TGG | 0.549665 | 3.3:-91971857 | MS.gene014564:CDS |
| TTTGAGGTAGAGAGGAGTGC+AGG | 0.549939 | 3.3:-91972445 | MS.gene014564:CDS |
| TAGAGAGGAGTGCAGGCACA+AGG | 0.551771 | 3.3:-91972438 | MS.gene014564:CDS |
| TAACACATTGTTGAATCTCA+AGG | 0.553569 | 3.3:+91972347 | None:intergenic |
| TTTGTTGTGCAGGGAAGCCA+GGG | 0.555249 | 3.3:-91972408 | MS.gene014564:CDS |
| TTCAGAAGTGCAGGGTATGG+TGG | 0.556553 | 3.3:-91971854 | MS.gene014564:CDS |
| GTAAACACATTGGAAGCATT+AGG | 0.566951 | 3.3:-91972370 | MS.gene014564:CDS |
| TTTCTGATTAAGATTTCACT+TGG | 0.582741 | 3.3:+91972579 | None:intergenic |
| TCGGCCATTAGATTCTTCGA+AGG | 0.598463 | 3.3:+91972906 | None:intergenic |
| CGAAGAATCTAATGGCCGAA+AGG | 0.611328 | 3.3:-91972902 | MS.gene014564:CDS |
| TGCTTCCAATGTGTTTACTG+TGG | 0.617642 | 3.3:+91972375 | None:intergenic |
| AGAGAGGAGTGCAGGCACAA+GGG | 0.627694 | 3.3:-91972437 | MS.gene014564:CDS |
| CTTAATCAGAAATTCTCCAA+AGG | 0.629828 | 3.3:-91972568 | MS.gene014564:intron |
| TAGTATGAACCAAGAATCTG+TGG | 0.634286 | 3.3:+91973146 | None:intergenic |
| TCTTCTCCCATCATGGACAG+TGG | 0.637946 | 3.3:+91973080 | None:intergenic |
| CTATGATGGAGATTTCATTG+AGG | 0.638365 | 3.3:-91973405 | MS.gene014564:CDS |
| AATTGTCCCTAAGATAAGCA+AGG | 0.652852 | 3.3:-91972835 | MS.gene014564:intron |
| AAGCCTTATTCAGAAGTGCA+GGG | 0.666202 | 3.3:-91971862 | MS.gene014564:CDS |
| GCTATCCACAGTAAACACAT+TGG | 0.673367 | 3.3:-91972380 | MS.gene014564:CDS |
| TTGCTCGTAGCATTGAAAGA+CGG | 0.697294 | 3.3:+91972856 | None:intergenic |
| AATGCAGGCTTCTTGCTCGG+AGG | 0.698752 | 3.3:-91972302 | MS.gene014564:intron |
| ACTGTGGATAGCAACAACCC+TGG | 0.706149 | 3.3:+91972391 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATATAAATTCATCAAA+AGG | - | chr3.3:91973128-91973147 | MS.gene014564:CDS | 15.0% |
| !! | AACACAGATTAATTTCAAAA+GGG | + | chr3.3:91972728-91972747 | None:intergenic | 20.0% |
| !! | AGTATCACTAACAAAATATT+AGG | + | chr3.3:91973082-91973101 | None:intergenic | 20.0% |
| !! | ATATATTGTCTTTCTTAGTT+AGG | - | chr3.3:91973291-91973310 | MS.gene014564:CDS | 20.0% |
| !! | CACACAGAAATAAAAATAAT+TGG | + | chr3.3:91972758-91972777 | None:intergenic | 20.0% |
| !! | GAAAGACAATATATACTATT+AGG | + | chr3.3:91973285-91973304 | None:intergenic | 20.0% |
| !! | TTCAACAAAACAAATTAGAT+CGG | + | chr3.3:91972506-91972525 | None:intergenic | 20.0% |
| !!! | ATCTAATTTGTTTTGTTGAA+TGG | - | chr3.3:91972506-91972525 | MS.gene014564:intron | 20.0% |
| !!! | GGAGTAATATTAGAATTTTT+TGG | - | chr3.3:91973221-91973240 | MS.gene014564:CDS | 20.0% |
| ! | AAATTCTAATATTACTCCCT+CGG | + | chr3.3:91973219-91973238 | None:intergenic | 25.0% |
| ! | AACACTTTCAATGAAATCTA+TGG | - | chr3.3:91972060-91972079 | MS.gene014564:intron | 25.0% |
| ! | AAGTCTTCTTGAGAAATAAA+TGG | + | chr3.3:91972153-91972172 | None:intergenic | 25.0% |
| ! | AGATTTCATTGAGGAATTAA+TGG | - | chr3.3:91971858-91971877 | MS.gene014564:CDS | 25.0% |
| ! | CAACACAGATTAATTTCAAA+AGG | + | chr3.3:91972729-91972748 | None:intergenic | 25.0% |
| ! | CAATAAATATTTGTGACAGA+TGG | - | chr3.3:91972530-91972549 | MS.gene014564:intron | 25.0% |
| ! | CTTTAATTCGACAGTTAAAA+AGG | - | chr3.3:91973191-91973210 | MS.gene014564:CDS | 25.0% |
| ! | GAATTAAAGTCATTTACACA+TGG | + | chr3.3:91973180-91973199 | None:intergenic | 25.0% |
| ! | TTAGTTACTTAATACTTCCT+CGG | - | chr3.3:91972979-91972998 | MS.gene014564:CDS | 25.0% |
| ! | TTGAAATTAATCTGTGTTGA+AGG | - | chr3.3:91972730-91972749 | MS.gene014564:intron | 25.0% |
| ! | TTTCTGATTAAGATTTCACT+TGG | + | chr3.3:91972678-91972697 | None:intergenic | 25.0% |
| !!! | AATTGATTTTCTTCATGACA+TGG | + | chr3.3:91971916-91971935 | None:intergenic | 25.0% |
| !!! | AATTGTTACTTTGTAGTTTG+AGG | - | chr3.3:91972793-91972812 | MS.gene014564:intron | 25.0% |
| CTTAATCAGAAATTCTCCAA+AGG | - | chr3.3:91972686-91972705 | MS.gene014564:CDS | 30.0% | |
| TAACACATTGTTGAATCTCA+AGG | + | chr3.3:91972910-91972929 | None:intergenic | 30.0% | |
| TGTTGAAGATTCATCAAGTA+AGG | + | chr3.3:91972088-91972107 | None:intergenic | 30.0% | |
| TTTCAATGATTTCACAATGC+AGG | - | chr3.3:91972937-91972956 | MS.gene014564:CDS | 30.0% | |
| ! | ATTTTCTTCATGACATGGAT+TGG | + | chr3.3:91971911-91971930 | None:intergenic | 30.0% |
| ! | TCAGTGAAATTTTGTACCTT+TGG | + | chr3.3:91972705-91972724 | None:intergenic | 30.0% |
| ! | TCATTGTTGTTATAGCTTTG+AGG | + | chr3.3:91972030-91972049 | None:intergenic | 30.0% |
| !! | TTTCTTGTTTGTTATGCAAC+AGG | - | chr3.3:91973327-91973346 | MS.gene014564:CDS | 30.0% |
| AATTGTCCCTAAGATAAGCA+AGG | - | chr3.3:91972419-91972438 | MS.gene014564:CDS | 35.0% | |
| CAAGAAGAGTTTGGAAGATA+TGG | + | chr3.3:91971994-91972013 | None:intergenic | 35.0% | |
| CGACATTTAAAAAGTAACCG+AGG | + | chr3.3:91972999-91973018 | None:intergenic | 35.0% | |
| TACCTACCTTGCTTATCTTA+GGG | + | chr3.3:91972428-91972447 | None:intergenic | 35.0% | |
| TAGTATGAACCAAGAATCTG+TGG | + | chr3.3:91972111-91972130 | None:intergenic | 35.0% | |
| TGATGAAGAGCTTCAGAATT+TGG | - | chr3.3:91972212-91972231 | MS.gene014564:intron | 35.0% | |
| TTGAAAACTACTGGCATTTC+AGG | + | chr3.3:91972276-91972295 | None:intergenic | 35.0% | |
| ! | AGTAGTTTTCAACACTGGTA+AGG | - | chr3.3:91972284-91972303 | MS.gene014564:intron | 35.0% |
| ! | CTATGATGGAGATTTCATTG+AGG | - | chr3.3:91971849-91971868 | MS.gene014564:CDS | 35.0% |
| ! | GTAGTTTTCAACACTGGTAA+GGG | - | chr3.3:91972285-91972304 | MS.gene014564:intron | 35.0% |
| ! | TGTTGACTACAAGAAGAGTT+TGG | + | chr3.3:91972003-91972022 | None:intergenic | 35.0% |
| ! | TTACCAGTGTTGAAAACTAC+TGG | + | chr3.3:91972285-91972304 | None:intergenic | 35.0% |
| !! | GTAAACACATTGGAAGCATT+AGG | - | chr3.3:91972884-91972903 | MS.gene014564:CDS | 35.0% |
| !! | GTTTGTTATGCAACAGGAAT+TGG | - | chr3.3:91973333-91973352 | MS.gene014564:CDS | 35.0% |
| AACCGATCGAAGAAACTTCA+AGG | - | chr3.3:91972321-91972340 | MS.gene014564:CDS | 40.0% | |
| ACAGCCTTCGAAGAATCTAA+TGG | - | chr3.3:91972344-91972363 | MS.gene014564:CDS | 40.0% | |
| ATACCCTGCACTTCTGAATA+AGG | + | chr3.3:91973398-91973417 | None:intergenic | 40.0% | |
| ATGGACAGAACAGCTATACT+TGG | - | chr3.3:91972549-91972568 | MS.gene014564:intron | 40.0% | |
| GCAACAGGAATTGGAGAAAA+AGG | - | chr3.3:91973342-91973361 | MS.gene014564:CDS | 40.0% | |
| GCTATCCACAGTAAACACAT+TGG | - | chr3.3:91972874-91972893 | MS.gene014564:CDS | 40.0% | |
| GCTGCAAACAGCATGTAAAA+TGG | - | chr3.3:91972236-91972255 | MS.gene014564:intron | 40.0% | |
| GTACCTACCTTGCTTATCTT+AGG | + | chr3.3:91972429-91972448 | None:intergenic | 40.0% | |
| GTCCTTGAAGTTTCTTCGAT+CGG | + | chr3.3:91972326-91972345 | None:intergenic | 40.0% | |
| TCTCTTTCGTCTTCTCCTTT+CGG | + | chr3.3:91972370-91972389 | None:intergenic | 40.0% | |
| TCTTCAACACCACAGATTCT+TGG | - | chr3.3:91972099-91972118 | MS.gene014564:intron | 40.0% | |
| TGCTTCCAATGTGTTTACTG+TGG | + | chr3.3:91972882-91972901 | None:intergenic | 40.0% | |
| TTGATCTTCTTCTCCCATCA+TGG | + | chr3.3:91972184-91972203 | None:intergenic | 40.0% | |
| TTTCAACACTGGTAAGGGTA+TGG | - | chr3.3:91972290-91972309 | MS.gene014564:intron | 40.0% | |
| ! | ATGCCAGTAGTTTTCAACAC+TGG | - | chr3.3:91972279-91972298 | MS.gene014564:intron | 40.0% |
| ! | CTTTGTAGTTTGAGGTAGAG+AGG | - | chr3.3:91972801-91972820 | MS.gene014564:intron | 40.0% |
| ! | GGCATTTCAGGTGATTGTAT+TGG | + | chr3.3:91972264-91972283 | None:intergenic | 40.0% |
| ! | TTATTCAGAAGTGCAGGGTA+TGG | - | chr3.3:91973397-91973416 | MS.gene014564:CDS | 40.0% |
| ! | TTGCTCGTAGCATTGAAAGA+CGG | + | chr3.3:91972401-91972420 | None:intergenic | 40.0% |
| !! | AAGCCTTATTCAGAAGTGCA+GGG | - | chr3.3:91973392-91973411 | MS.gene014564:CDS | 40.0% |
| !! | AGGGTTGAAATTTGTTGTGC+AGG | - | chr3.3:91972836-91972855 | MS.gene014564:CDS | 40.0% |
| !! | GGGTTGAAATTTGTTGTGCA+GGG | - | chr3.3:91972837-91972856 | MS.gene014564:CDS | 40.0% |
| AGACTTTCCACTGTCCATGA+TGG | - | chr3.3:91972167-91972186 | MS.gene014564:intron | 45.0% | |
| CGAAGAATCTAATGGCCGAA+AGG | - | chr3.3:91972352-91972371 | MS.gene014564:CDS | 45.0% | |
| GACAGTTAAAAAGGAGCCGA+GGG | - | chr3.3:91973200-91973219 | MS.gene014564:CDS | 45.0% | |
| GACTTTCCACTGTCCATGAT+GGG | - | chr3.3:91972168-91972187 | MS.gene014564:intron | 45.0% | |
| GTCCCTAAGATAAGCAAGGT+AGG | - | chr3.3:91972423-91972442 | MS.gene014564:CDS | 45.0% | |
| TCGGCCATTAGATTCTTCGA+AGG | + | chr3.3:91972351-91972370 | None:intergenic | 45.0% | |
| !! | CAAGCCTTATTCAGAAGTGC+AGG | - | chr3.3:91973391-91973410 | MS.gene014564:CDS | 45.0% |
| ACTGTGGATAGCAACAACCC+TGG | + | chr3.3:91972866-91972885 | None:intergenic | 50.0% | |
| CACAATGCAGGCTTCTTGCT+CGG | - | chr3.3:91972949-91972968 | MS.gene014564:CDS | 50.0% | |
| CGACAGTTAAAAAGGAGCCG+AGG | - | chr3.3:91973199-91973218 | MS.gene014564:CDS | 50.0% | |
| TCTTCTCCCATCATGGACAG+TGG | + | chr3.3:91972177-91972196 | None:intergenic | 50.0% | |
| ! | TTCAGAAGTGCAGGGTATGG+TGG | - | chr3.3:91973400-91973419 | MS.gene014564:CDS | 50.0% |
| ! | TTTGAGGTAGAGAGGAGTGC+AGG | - | chr3.3:91972809-91972828 | MS.gene014564:intron | 50.0% |
| ! | TTTGTTGTGCAGGGAAGCCA+GGG | - | chr3.3:91972846-91972865 | MS.gene014564:CDS | 50.0% |
| !! | ATTTGTTGTGCAGGGAAGCC+AGG | - | chr3.3:91972845-91972864 | MS.gene014564:CDS | 50.0% |
| AATGCAGGCTTCTTGCTCGG+AGG | - | chr3.3:91972952-91972971 | MS.gene014564:CDS | 55.0% | |
| ! | AGAGAGGAGTGCAGGCACAA+GGG | - | chr3.3:91972817-91972836 | MS.gene014564:intron | 55.0% |
| ! | TAGAGAGGAGTGCAGGCACA+AGG | - | chr3.3:91972816-91972835 | MS.gene014564:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91971841 | 91973435 | 91971841 | ID=MS.gene014564 |
| chr3.3 | mRNA | 91971841 | 91973435 | 91971841 | ID=MS.gene014564.t1;Parent=MS.gene014564 |
| chr3.3 | exon | 91972836 | 91973435 | 91972836 | ID=MS.gene014564.t1.exon1;Parent=MS.gene014564.t1 |
| chr3.3 | CDS | 91972836 | 91973435 | 91972836 | ID=cds.MS.gene014564.t1;Parent=MS.gene014564.t1 |
| chr3.3 | exon | 91972569 | 91972727 | 91972569 | ID=MS.gene014564.t1.exon2;Parent=MS.gene014564.t1 |
| chr3.3 | CDS | 91972569 | 91972727 | 91972569 | ID=cds.MS.gene014564.t1;Parent=MS.gene014564.t1 |
| chr3.3 | exon | 91972303 | 91972467 | 91972303 | ID=MS.gene014564.t1.exon3;Parent=MS.gene014564.t1 |
| chr3.3 | CDS | 91972303 | 91972467 | 91972303 | ID=cds.MS.gene014564.t1;Parent=MS.gene014564.t1 |
| chr3.3 | exon | 91971841 | 91971927 | 91971841 | ID=MS.gene014564.t1.exon4;Parent=MS.gene014564.t1 |
| chr3.3 | CDS | 91971841 | 91971927 | 91971841 | ID=cds.MS.gene014564.t1;Parent=MS.gene014564.t1 |
| Gene Sequence |
| Protein sequence |
