Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014628.t1 | AES73877.1 | 88.3 | 326 | 27 | 4 | 1 | 323 | 1 | 318 | 3.40E-147 | 531.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014628.t1 | O82632 | 48.9 | 317 | 115 | 10 | 30 | 323 | 16 | 308 | 1.2e-63 | 245.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014628.t1 | G7J3H0 | 88.3 | 326 | 27 | 4 | 1 | 323 | 1 | 318 | 2.5e-147 | 531.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014628.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014628.t1 | MTR_3g109760 | 92.025 | 326 | 15 | 4 | 1 | 323 | 1 | 318 | 0.0 | 543 |
| MS.gene014628.t1 | MTR_1g006650 | 52.857 | 350 | 120 | 10 | 6 | 323 | 8 | 344 | 3.12e-107 | 317 |
| MS.gene014628.t1 | MTR_8g013950 | 45.082 | 366 | 134 | 14 | 1 | 323 | 1 | 342 | 4.67e-80 | 247 |
| MS.gene014628.t1 | MTR_4g071590 | 36.824 | 296 | 144 | 11 | 1 | 281 | 13 | 280 | 1.57e-43 | 151 |
| MS.gene014628.t1 | MTR_4g471590 | 36.824 | 296 | 144 | 11 | 1 | 281 | 13 | 280 | 1.57e-43 | 151 |
| MS.gene014628.t1 | MTR_8g076340 | 39.362 | 282 | 128 | 11 | 19 | 282 | 32 | 288 | 4.50e-42 | 147 |
| MS.gene014628.t1 | MTR_3g117380 | 39.483 | 271 | 143 | 10 | 19 | 282 | 43 | 299 | 8.64e-39 | 139 |
| MS.gene014628.t1 | MTR_1g094930 | 37.984 | 258 | 96 | 8 | 83 | 276 | 49 | 306 | 3.63e-38 | 138 |
| MS.gene014628.t1 | MTR_6g032830 | 37.054 | 224 | 92 | 5 | 104 | 278 | 35 | 258 | 5.52e-36 | 130 |
| MS.gene014628.t1 | MTR_5g021340 | 40.708 | 226 | 96 | 7 | 90 | 282 | 150 | 370 | 9.76e-35 | 130 |
| MS.gene014628.t1 | MTR_1g094930 | 57.009 | 107 | 44 | 2 | 171 | 276 | 106 | 211 | 1.80e-34 | 126 |
| MS.gene014628.t1 | MTR_7g085410 | 40.566 | 212 | 83 | 7 | 104 | 276 | 45 | 252 | 6.39e-34 | 125 |
| MS.gene014628.t1 | MTR_1g046680 | 78.873 | 71 | 15 | 0 | 211 | 281 | 171 | 241 | 1.70e-33 | 124 |
| MS.gene014628.t1 | MTR_5g007600 | 53.211 | 109 | 51 | 0 | 173 | 281 | 220 | 328 | 4.68e-33 | 125 |
| MS.gene014628.t1 | MTR_5g007600 | 49.206 | 126 | 49 | 2 | 151 | 275 | 109 | 220 | 5.27e-30 | 116 |
| MS.gene014628.t1 | MTR_1g116010 | 73.529 | 68 | 18 | 0 | 209 | 276 | 161 | 228 | 1.31e-29 | 113 |
| MS.gene014628.t1 | MTR_2g094600 | 75.385 | 65 | 16 | 0 | 212 | 276 | 216 | 280 | 3.25e-29 | 114 |
| MS.gene014628.t1 | MTR_4g058910 | 62.963 | 81 | 30 | 0 | 212 | 292 | 314 | 394 | 3.81e-29 | 115 |
| MS.gene014628.t1 | MTR_7g446110 | 55.696 | 79 | 32 | 2 | 201 | 278 | 175 | 251 | 2.20e-22 | 94.4 |
| MS.gene014628.t1 | MTR_7g446070 | 34.783 | 184 | 102 | 6 | 91 | 272 | 25 | 192 | 3.73e-21 | 89.7 |
| MS.gene014628.t1 | MTR_7g445950 | 34.254 | 181 | 86 | 6 | 95 | 272 | 30 | 180 | 1.96e-20 | 87.4 |
| MS.gene014628.t1 | MTR_7g445980 | 66.071 | 56 | 18 | 1 | 216 | 270 | 37 | 92 | 3.22e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014628.t1 | AT4G32890 | 49.684 | 316 | 114 | 10 | 30 | 323 | 16 | 308 | 5.94e-87 | 263 |
| MS.gene014628.t1 | AT5G25830 | 47.175 | 354 | 129 | 11 | 2 | 323 | 4 | 331 | 3.18e-85 | 260 |
| MS.gene014628.t1 | AT3G60530 | 48.039 | 204 | 74 | 5 | 89 | 292 | 63 | 234 | 1.57e-51 | 171 |
| MS.gene014628.t1 | AT2G45050 | 48.372 | 215 | 75 | 7 | 89 | 289 | 65 | 257 | 1.01e-48 | 164 |
| MS.gene014628.t1 | AT4G36240 | 40.078 | 257 | 109 | 8 | 32 | 279 | 11 | 231 | 4.90e-38 | 135 |
| MS.gene014628.t1 | AT5G66320 | 39.768 | 259 | 98 | 7 | 76 | 292 | 87 | 329 | 8.55e-38 | 137 |
| MS.gene014628.t1 | AT5G66320 | 39.768 | 259 | 98 | 7 | 76 | 292 | 87 | 329 | 8.55e-38 | 137 |
| MS.gene014628.t1 | AT3G24050 | 77.941 | 68 | 15 | 0 | 211 | 278 | 193 | 260 | 4.46e-33 | 123 |
| MS.gene014628.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 209 | 284 | 217 | 298 | 4.27e-32 | 121 |
| MS.gene014628.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 209 | 284 | 217 | 298 | 4.27e-32 | 121 |
| MS.gene014628.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 209 | 284 | 217 | 298 | 4.27e-32 | 121 |
| MS.gene014628.t1 | AT4G34680 | 43.478 | 184 | 73 | 7 | 99 | 281 | 96 | 249 | 7.27e-32 | 120 |
| MS.gene014628.t1 | AT4G34680 | 43.478 | 184 | 73 | 7 | 99 | 281 | 96 | 249 | 7.27e-32 | 120 |
| MS.gene014628.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 212 | 279 | 229 | 296 | 9.97e-32 | 121 |
| MS.gene014628.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 212 | 279 | 229 | 296 | 9.97e-32 | 121 |
| MS.gene014628.t1 | AT3G51080 | 73.913 | 69 | 18 | 0 | 212 | 280 | 221 | 289 | 4.16e-30 | 116 |
| MS.gene014628.t1 | AT1G08000 | 60.227 | 88 | 30 | 1 | 209 | 291 | 215 | 302 | 4.49e-30 | 116 |
| MS.gene014628.t1 | AT1G08000 | 60.227 | 88 | 30 | 1 | 209 | 291 | 215 | 302 | 4.49e-30 | 116 |
| MS.gene014628.t1 | AT3G45170 | 62.319 | 69 | 26 | 0 | 212 | 280 | 115 | 183 | 5.62e-26 | 102 |
| MS.gene014628.t1 | AT2G28340 | 68.254 | 63 | 20 | 0 | 214 | 276 | 193 | 255 | 1.29e-24 | 101 |
Find 94 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGATTCCTCAGCAAATT+TGG | 0.139979 | 3.1:+88147884 | None:intergenic |
| CTACATGAGGTGCGTGAAAT+CGG | 0.267854 | 3.1:+88147257 | None:intergenic |
| TGGATTAAAGGCACCAAATA+AGG | 0.274630 | 3.1:-88147826 | MS.gene014628:CDS |
| CACGCATTGCATAGTGTCTT+TGG | 0.290696 | 3.1:+88147513 | None:intergenic |
| ACAGTTGATATCTGGATTAA+AGG | 0.306992 | 3.1:-88147838 | MS.gene014628:CDS |
| CATAAGCTACAGTTGATATC+TGG | 0.309428 | 3.1:-88147846 | MS.gene014628:CDS |
| AAGGGCCGTCGGCAGAATTC+TGG | 0.309787 | 3.1:+88149471 | None:intergenic |
| CAGTGGCGCACCGGGCCATT+AGG | 0.332794 | 3.1:-88147537 | MS.gene014628:CDS |
| CATAGTGTCTTTGGACCTAA+TGG | 0.339675 | 3.1:+88147522 | None:intergenic |
| CACGTGTGCCTCCATGCAAC+TGG | 0.370780 | 3.1:-88147722 | MS.gene014628:CDS |
| GGGCCCTCATCATCTCCTTC+TGG | 0.374473 | 3.1:+88147376 | None:intergenic |
| ATTGTGGACAGAAGCTGGTT+TGG | 0.397002 | 3.1:+88149693 | None:intergenic |
| TTGCAACAATTGGTGTTGTT+GGG | 0.408578 | 3.1:+88147356 | None:intergenic |
| GTTGCAACAATTGGTGTTGT+TGG | 0.409369 | 3.1:+88147355 | None:intergenic |
| GACACTTGAGGGTGTATTGT+TGG | 0.425894 | 3.1:+88147774 | None:intergenic |
| TGCTTAGTCAACACAAATGT+TGG | 0.431309 | 3.1:+88147435 | None:intergenic |
| CATCACAGCATTATGTTTGA+AGG | 0.433831 | 3.1:-88147324 | MS.gene014628:CDS |
| TCTCTTTGATTTCTCTAATG+AGG | 0.434233 | 3.1:-88149606 | MS.gene014628:CDS |
| CGGCAAAAGCCCGTAGTAAA+CGG | 0.443499 | 3.1:-88147746 | MS.gene014628:CDS |
| TTCGAAAGTGGGGTCTTCAA+TGG | 0.445894 | 3.1:+88149577 | None:intergenic |
| TACATGAGGTGCGTGAAATC+GGG | 0.448275 | 3.1:+88147258 | None:intergenic |
| TTGCACCTTTCGATGTGAGT+TGG | 0.456005 | 3.1:+88147410 | None:intergenic |
| CTCCGGCGAACTCTCCGTTC+CGG | 0.462198 | 3.1:-88149447 | MS.gene014628:intron |
| ACGGAGAGTTCGCCGGAGAA+AGG | 0.464710 | 3.1:+88149452 | None:intergenic |
| AGATGTGGTGGTGGTGGTCA+TGG | 0.465812 | 3.1:+88147671 | None:intergenic |
| GTTTGTGGTGGAATTGTTGT+CGG | 0.468374 | 3.1:+88149670 | None:intergenic |
| GTGGTGGTGGTGGTCATGGT+TGG | 0.470501 | 3.1:+88147675 | None:intergenic |
| TTGCCGGGACAGACACTTGA+GGG | 0.471708 | 3.1:+88147763 | None:intergenic |
| ACAAATGTTGGGCTTGCTGC+AGG | 0.475199 | 3.1:+88147447 | None:intergenic |
| ATGATCTTGCGCAGCTAGAA+TGG | 0.476849 | 3.1:-88147911 | MS.gene014628:CDS |
| TCATCATCTCCTTCTGGCGT+CGG | 0.486176 | 3.1:+88147382 | None:intergenic |
| CGGAGAGTTCGCCGGAGAAA+GGG | 0.487872 | 3.1:+88149453 | None:intergenic |
| GCTTAGTCAACACAAATGTT+GGG | 0.498811 | 3.1:+88147436 | None:intergenic |
| AGCAGTGTTTACATTGTTTG+TGG | 0.499828 | 3.1:+88149655 | None:intergenic |
| TCTGCCGACGGCCCTTTCTC+CGG | 0.501462 | 3.1:-88149464 | MS.gene014628:CDS |
| GTGGGATTGGTTTCAAGAGG+AGG | 0.506926 | 3.1:+88149524 | None:intergenic |
| GTGGAATTGTTGTCGGATTG+TGG | 0.509048 | 3.1:+88149677 | None:intergenic |
| AGGAGGAGATTCTTCGAAAG+TGG | 0.514544 | 3.1:+88149565 | None:intergenic |
| GATGTTGTAGTTGCAACAAT+TGG | 0.517809 | 3.1:+88147346 | None:intergenic |
| ACACTTGAGGGTGTATTGTT+GGG | 0.518688 | 3.1:+88147775 | None:intergenic |
| AGACTCCACAGTGGCGCACC+GGG | 0.518894 | 3.1:-88147545 | MS.gene014628:CDS |
| AAGACTCCACAGTGGCGCAC+CGG | 0.525177 | 3.1:-88147546 | MS.gene014628:CDS |
| GAATCATTAGAGTTGGTAGG+AGG | 0.531077 | 3.1:+88149548 | None:intergenic |
| GCAAGAGCTCCGACGCCAGA+AGG | 0.533988 | 3.1:-88147391 | MS.gene014628:CDS |
| GTCGGATTGTGGACAGAAGC+TGG | 0.535564 | 3.1:+88149688 | None:intergenic |
| GGAGAATCATTAGAGTTGGT+AGG | 0.541668 | 3.1:+88149545 | None:intergenic |
| ATATCAACTGTAGCTTATGA+AGG | 0.545098 | 3.1:+88147850 | None:intergenic |
| AGGAGGAGAATCATTAGAGT+TGG | 0.548174 | 3.1:+88149541 | None:intergenic |
| GTCGACTCGTACCTGAGTAT+AGG | 0.562857 | 3.1:-88147470 | MS.gene014628:CDS |
| CACACGTGACCGTTTACTAC+GGG | 0.563431 | 3.1:+88147737 | None:intergenic |
| AATGGCCCGGTGCGCCACTG+TGG | 0.564107 | 3.1:+88147540 | None:intergenic |
| GGAGGAGATTCTTCGAAAGT+GGG | 0.565310 | 3.1:+88149566 | None:intergenic |
| TGTGGAGTCAGATACAAGTC+AGG | 0.567755 | 3.1:-88147492 | MS.gene014628:CDS |
| TACCGGAACGGAGAGTTCGC+CGG | 0.569597 | 3.1:+88149445 | None:intergenic |
| GACGCCAGAAGGAGATGATG+AGG | 0.570929 | 3.1:-88147380 | MS.gene014628:CDS |
| GAAGTGGGATTGGTTTCAAG+AGG | 0.577002 | 3.1:+88149521 | None:intergenic |
| AGAGATCTTCAACGATGAAG+TGG | 0.579783 | 3.1:+88149624 | None:intergenic |
| GTGAGAAGATGTGGTGGTGG+TGG | 0.580310 | 3.1:+88147665 | None:intergenic |
| GCACACGTGACCGTTTACTA+CGG | 0.581455 | 3.1:+88147736 | None:intergenic |
| AGGCGCGAAGTCCAGTTGCA+TGG | 0.582876 | 3.1:+88147711 | None:intergenic |
| TGTCTTTGGACCTAATGGCC+CGG | 0.587867 | 3.1:+88147527 | None:intergenic |
| GACCTCGGTGATGGAGGAGA+GGG | 0.591558 | 3.1:-88147597 | MS.gene014628:CDS |
| TTTGCCGGGACAGACACTTG+AGG | 0.592935 | 3.1:+88147762 | None:intergenic |
| ACACCCTCAAGTGTCTGTCC+CGG | 0.593472 | 3.1:-88147766 | MS.gene014628:CDS |
| AAAAGAGACCTCGGTGATGG+AGG | 0.595010 | 3.1:-88147603 | MS.gene014628:CDS |
| AATCAAGTAATCCTCACCGT+TGG | 0.595692 | 3.1:+88147296 | None:intergenic |
| AGAGTGAGAAGATGTGGTGG+TGG | 0.596239 | 3.1:+88147662 | None:intergenic |
| AAGTAATCCTCACCGTTGGA+TGG | 0.600786 | 3.1:+88147300 | None:intergenic |
| TATAATGGCACGTACCGGAA+CGG | 0.606350 | 3.1:+88149433 | None:intergenic |
| ACGCCAGAAGGAGATGATGA+GGG | 0.609091 | 3.1:-88147379 | MS.gene014628:CDS |
| AGACCTCGGTGATGGAGGAG+AGG | 0.609530 | 3.1:-88147598 | MS.gene014628:CDS |
| TTCGCCGGAGAAAGGGCCGT+CGG | 0.611125 | 3.1:+88149460 | None:intergenic |
| GCACTCCAACTCACATCGAA+AGG | 0.612333 | 3.1:-88147415 | MS.gene014628:CDS |
| AGTGTTTACATTGTTTGTGG+TGG | 0.618078 | 3.1:+88149658 | None:intergenic |
| CTTGCTGCAGGCCTATACTC+AGG | 0.624212 | 3.1:+88147459 | None:intergenic |
| ATCTTCAACGATGAAGTGGT+CGG | 0.624703 | 3.1:+88149628 | None:intergenic |
| ATCTTCTCACTCTGACACCA+TGG | 0.629511 | 3.1:-88147652 | MS.gene014628:CDS |
| TCGTGCCAGAATTCTGCCGA+CGG | 0.642132 | 3.1:-88149476 | MS.gene014628:CDS |
| GTCAGAGTGAGAAGATGTGG+TGG | 0.644152 | 3.1:+88147659 | None:intergenic |
| ATGTTTGAAGGACCATCCAA+CGG | 0.648434 | 3.1:-88147312 | MS.gene014628:CDS |
| CCAAAGCACCGTACTACATG+AGG | 0.651273 | 3.1:+88147244 | None:intergenic |
| CCACTGTGGAGTCTTATCAG+TGG | 0.652363 | 3.1:+88147554 | None:intergenic |
| ATGGATGTCCAAATTTGCTG+AGG | 0.653086 | 3.1:-88147892 | MS.gene014628:CDS |
| TGGTTGGAGAGAGAACTAGA+AGG | 0.657111 | 3.1:+88147691 | None:intergenic |
| CGCGAAGTCCAGTTGCATGG+AGG | 0.662375 | 3.1:+88147714 | None:intergenic |
| TACTTGATTCATCAACACGT+GGG | 0.670141 | 3.1:-88147282 | MS.gene014628:CDS |
| GGTGTCAGAGTGAGAAGATG+TGG | 0.671117 | 3.1:+88147656 | None:intergenic |
| TGAAGGACCATCCAACGGTG+AGG | 0.675304 | 3.1:-88147307 | MS.gene014628:CDS |
| AAGACACTATGCAATGCGTG+TGG | 0.676419 | 3.1:-88147510 | MS.gene014628:CDS |
| GAGGAGATTCTTCGAAAGTG+GGG | 0.692052 | 3.1:+88149567 | None:intergenic |
| TTACTTGATTCATCAACACG+TGG | 0.700709 | 3.1:-88147283 | MS.gene014628:CDS |
| GACCCTCTCCTCCATCACCG+AGG | 0.717630 | 3.1:+88147595 | None:intergenic |
| ATTCTGGCACGAATTGACGT+CGG | 0.752925 | 3.1:+88149487 | None:intergenic |
| CCACTGATAAGACTCCACAG+TGG | 0.837860 | 3.1:-88147554 | MS.gene014628:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTAAAAAAAAATATAG+GGG | + | chr3.1:88148493-88148512 | None:intergenic | 10.0% |
| !! | CTATAGTTAAAAAAAAATAT+AGG | + | chr3.1:88148495-88148514 | None:intergenic | 10.0% |
| !! | TATTATTTATATACAACAAT+TGG | - | chr3.1:88147633-88147652 | MS.gene014628:CDS | 10.0% |
| !! | ATATAAAGTAAGAATTCTAA+TGG | - | chr3.1:88148795-88148814 | MS.gene014628:intron | 15.0% |
| !! | ATATTTGTAATAAAAGCTAA+GGG | + | chr3.1:88148541-88148560 | None:intergenic | 15.0% |
| !! | ATGTGACAAAATTAAAAATA+GGG | + | chr3.1:88148105-88148124 | None:intergenic | 15.0% |
| !! | TAGTTAAAAAAAAATATAGG+GGG | + | chr3.1:88148492-88148511 | None:intergenic | 15.0% |
| !! | TATATTTGTAATAAAAGCTA+AGG | + | chr3.1:88148542-88148561 | None:intergenic | 15.0% |
| !! | TATGTGACAAAATTAAAAAT+AGG | + | chr3.1:88148106-88148125 | None:intergenic | 15.0% |
| !!! | AAATAAAGAGAGTATTATTT+AGG | + | chr3.1:88147710-88147729 | None:intergenic | 15.0% |
| !!! | TATTATTTTTGTTTAGAGAA+GGG | + | chr3.1:88148580-88148599 | None:intergenic | 15.0% |
| !!! | TCATTTTTAAGATACTATAT+CGG | + | chr3.1:88148768-88148787 | None:intergenic | 15.0% |
| !!! | TCTTAAGATATACTTTTTTT+AGG | + | chr3.1:88148728-88148747 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTGTTTAGAGA+AGG | + | chr3.1:88148581-88148600 | None:intergenic | 15.0% |
| !! | AGAAAATACATAACCTAATA+TGG | - | chr3.1:88148947-88148966 | MS.gene014628:intron | 20.0% |
| !! | TCTTAAGACAACAATTAAAA+AGG | - | chr3.1:88148740-88148759 | MS.gene014628:intron | 20.0% |
| !! | TTTCATAAGTATGACAATTA+TGG | + | chr3.1:88147899-88147918 | None:intergenic | 20.0% |
| !!! | ATTAGGTTATGTATTTTCTA+AGG | + | chr3.1:88148946-88148965 | None:intergenic | 20.0% |
| !!! | TTCTTTTTATACTCCATATT+AGG | + | chr3.1:88148963-88148982 | None:intergenic | 20.0% |
| ! | AATGGAACAGATAAAATTGT+AGG | + | chr3.1:88147673-88147692 | None:intergenic | 25.0% |
| ! | ATAAGAAAATGTGAGGTATA+TGG | - | chr3.1:88148201-88148220 | MS.gene014628:intron | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | + | chr3.1:88148059-88148078 | None:intergenic | 25.0% |
| ! | TAAGAAAATGTGAGGTATAT+GGG | - | chr3.1:88148202-88148221 | MS.gene014628:intron | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | - | chr3.1:88148057-88148076 | MS.gene014628:intron | 25.0% |
| !! | GAGTGAATTTTGAATTTCAA+GGG | - | chr3.1:88148232-88148251 | MS.gene014628:intron | 25.0% |
| !!! | ATAGTCTTTTATTTAGTCGT+GGG | - | chr3.1:88148176-88148195 | MS.gene014628:intron | 25.0% |
| !!! | GTTTTTGATTCAACCTTATT+TGG | + | chr3.1:88149160-88149179 | None:intergenic | 25.0% |
| !!! | TATAGTCTTTTATTTAGTCG+TGG | - | chr3.1:88148175-88148194 | MS.gene014628:intron | 25.0% |
| AAATGATTCCTCAGCAAATT+TGG | + | chr3.1:88149089-88149108 | None:intergenic | 30.0% | |
| ATATATATAATGGCACGTAC+CGG | + | chr3.1:88147545-88147564 | None:intergenic | 30.0% | |
| ATATCAACTGTAGCTTATGA+AGG | + | chr3.1:88149123-88149142 | None:intergenic | 30.0% | |
| ATCTGTTCCATTGAATTTGA+GGG | - | chr3.1:88147681-88147700 | MS.gene014628:CDS | 30.0% | |
| CACACATATTAAAGAAAAGC+AGG | + | chr3.1:88147821-88147840 | None:intergenic | 30.0% | |
| TATCTGTTCCATTGAATTTG+AGG | - | chr3.1:88147680-88147699 | MS.gene014628:CDS | 30.0% | |
| ! | ACAGTTGATATCTGGATTAA+AGG | - | chr3.1:88149132-88149151 | MS.gene014628:intron | 30.0% |
| ! | GGAGTGAATTTTGAATTTCA+AGG | - | chr3.1:88148231-88148250 | MS.gene014628:intron | 30.0% |
| ! | TCTCTTTGATTTCTCTAATG+AGG | - | chr3.1:88147364-88147383 | MS.gene014628:CDS | 30.0% |
| AAAATTAAAAATAGGGCCCC+GGG | + | chr3.1:88148098-88148117 | None:intergenic | 35.0% | |
| AGCAGTGTTTACATTGTTTG+TGG | + | chr3.1:88147318-88147337 | None:intergenic | 35.0% | |
| AGTGTTTACATTGTTTGTGG+TGG | + | chr3.1:88147315-88147334 | None:intergenic | 35.0% | |
| ATTGACGTCGGTGAAAAAAT+TGG | + | chr3.1:88147474-88147493 | None:intergenic | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | - | chr3.1:88147974-88147993 | MS.gene014628:intron | 35.0% | |
| CAAAATTAAAAATAGGGCCC+CGG | + | chr3.1:88148099-88148118 | None:intergenic | 35.0% | |
| CATCACAGCATTATGTTTGA+AGG | - | chr3.1:88149646-88149665 | MS.gene014628:CDS | 35.0% | |
| GAAAAAATTGGAAGTGGGAT+TGG | + | chr3.1:88147462-88147481 | None:intergenic | 35.0% | |
| GATGTTGTAGTTGCAACAAT+TGG | + | chr3.1:88149627-88149646 | None:intergenic | 35.0% | |
| GCTTAGTCAACACAAATGTT+GGG | + | chr3.1:88149537-88149556 | None:intergenic | 35.0% | |
| GTGGGAAATAAGAAAATGTG+AGG | - | chr3.1:88148194-88148213 | MS.gene014628:intron | 35.0% | |
| TACTTGATTCATCAACACGT+GGG | - | chr3.1:88149688-88149707 | MS.gene014628:CDS | 35.0% | |
| TAGGTTTCCCTCAAATTCAA+TGG | + | chr3.1:88147691-88147710 | None:intergenic | 35.0% | |
| TCGGTGAAAAAATTGGAAGT+GGG | + | chr3.1:88147467-88147486 | None:intergenic | 35.0% | |
| TGCTTAGTCAACACAAATGT+TGG | + | chr3.1:88149538-88149557 | None:intergenic | 35.0% | |
| TTACTTGATTCATCAACACG+TGG | - | chr3.1:88149687-88149706 | MS.gene014628:CDS | 35.0% | |
| TTGACTCAACATGTGTAGTT+AGG | - | chr3.1:88147599-88147618 | MS.gene014628:CDS | 35.0% | |
| ! | CATAAGCTACAGTTGATATC+TGG | - | chr3.1:88149124-88149143 | MS.gene014628:intron | 35.0% |
| !! | TGGATTAAAGGCACCAAATA+AGG | - | chr3.1:88149144-88149163 | MS.gene014628:intron | 35.0% |
| !! | TTGCAACAATTGGTGTTGTT+GGG | + | chr3.1:88149617-88149636 | None:intergenic | 35.0% |
| !!! | TGAGGAATCATTTTCAAGTG+AGG | - | chr3.1:88149096-88149115 | MS.gene014628:intron | 35.0% |
| AAATTAAAAATAGGGCCCCG+GGG | + | chr3.1:88148097-88148116 | None:intergenic | 40.0% | |
| AATCAAGTAATCCTCACCGT+TGG | + | chr3.1:88149677-88149696 | None:intergenic | 40.0% | |
| AGAGATCTTCAACGATGAAG+TGG | + | chr3.1:88147349-88147368 | None:intergenic | 40.0% | |
| AGGAGGAGAATCATTAGAGT+TGG | + | chr3.1:88147432-88147451 | None:intergenic | 40.0% | |
| ATATCTTATGTTCGCCGTGT+AGG | + | chr3.1:88148905-88148924 | None:intergenic | 40.0% | |
| ATCTTCAACGATGAAGTGGT+CGG | + | chr3.1:88147345-88147364 | None:intergenic | 40.0% | |
| ATGTGAGGTATATGGGATAG+AGG | - | chr3.1:88148209-88148228 | MS.gene014628:intron | 40.0% | |
| ATGTTTGAAGGACCATCCAA+CGG | - | chr3.1:88149658-88149677 | MS.gene014628:CDS | 40.0% | |
| CATAGTGTCTTTGGACCTAA+TGG | + | chr3.1:88149451-88149470 | None:intergenic | 40.0% | |
| CCTTATGATACACACCTACA+CGG | - | chr3.1:88148888-88148907 | MS.gene014628:intron | 40.0% | |
| GTCGGTGAAAAAATTGGAAG+TGG | + | chr3.1:88147468-88147487 | None:intergenic | 40.0% | |
| TCTCCAAGAAAAAGAGACCT+CGG | - | chr3.1:88149358-88149377 | MS.gene014628:intron | 40.0% | |
| TGTGAGGTATATGGGATAGA+GGG | - | chr3.1:88148210-88148229 | MS.gene014628:intron | 40.0% | |
| ! | ACACTTGAGGGTGTATTGTT+GGG | + | chr3.1:88149198-88149217 | None:intergenic | 40.0% |
| ! | AGGTCTCTTTTTCTTGGAGA+GGG | + | chr3.1:88149358-88149377 | None:intergenic | 40.0% |
| ! | GGAGAATCATTAGAGTTGGT+AGG | + | chr3.1:88147428-88147447 | None:intergenic | 40.0% |
| ! | GTTTGTGGTGGAATTGTTGT+CGG | + | chr3.1:88147303-88147322 | None:intergenic | 40.0% |
| !! | ATGGATGTCCAAATTTGCTG+AGG | - | chr3.1:88149078-88149097 | MS.gene014628:intron | 40.0% |
| !! | GAATCATTAGAGTTGGTAGG+AGG | + | chr3.1:88147425-88147444 | None:intergenic | 40.0% |
| !! | GTTGCAACAATTGGTGTTGT+TGG | + | chr3.1:88149618-88149637 | None:intergenic | 40.0% |
| !!! | TTTCTTGGAGAGGGCTTTTT+TGG | + | chr3.1:88149349-88149368 | None:intergenic | 40.0% |
| AAGACACTATGCAATGCGTG+TGG | - | chr3.1:88149460-88149479 | MS.gene014628:CDS | 45.0% | |
| AAGTAATCCTCACCGTTGGA+TGG | + | chr3.1:88149673-88149692 | None:intergenic | 45.0% | |
| AGAAAAAGAGACCTCGGTGA+TGG | - | chr3.1:88149364-88149383 | MS.gene014628:intron | 45.0% | |
| AGGAGGAGATTCTTCGAAAG+TGG | + | chr3.1:88147408-88147427 | None:intergenic | 45.0% | |
| ATCTTCTCACTCTGACACCA+TGG | - | chr3.1:88149318-88149337 | MS.gene014628:intron | 45.0% | |
| ATGATCTTGCGCAGCTAGAA+TGG | - | chr3.1:88149059-88149078 | MS.gene014628:intron | 45.0% | |
| ATTCTGGCACGAATTGACGT+CGG | + | chr3.1:88147486-88147505 | None:intergenic | 45.0% | |
| ATTGTGGACAGAAGCTGGTT+TGG | + | chr3.1:88147280-88147299 | None:intergenic | 45.0% | |
| CACGCATTGCATAGTGTCTT+TGG | + | chr3.1:88149460-88149479 | None:intergenic | 45.0% | |
| CCGTGTAGGTGTGTATCATA+AGG | + | chr3.1:88148891-88148910 | None:intergenic | 45.0% | |
| CTACATGAGGTGCGTGAAAT+CGG | + | chr3.1:88149716-88149735 | None:intergenic | 45.0% | |
| GAGGAGATTCTTCGAAAGTG+GGG | + | chr3.1:88147406-88147425 | None:intergenic | 45.0% | |
| GGAGGAGATTCTTCGAAAGT+GGG | + | chr3.1:88147407-88147426 | None:intergenic | 45.0% | |
| GTGGAATTGTTGTCGGATTG+TGG | + | chr3.1:88147296-88147315 | None:intergenic | 45.0% | |
| TACATGAGGTGCGTGAAATC+GGG | + | chr3.1:88149715-88149734 | None:intergenic | 45.0% | |
| TATAATGGCACGTACCGGAA+CGG | + | chr3.1:88147540-88147559 | None:intergenic | 45.0% | |
| TGGATTCTTAACAAGTGCCC+CGG | - | chr3.1:88148077-88148096 | MS.gene014628:intron | 45.0% | |
| TGGTTGGAGAGAGAACTAGA+AGG | + | chr3.1:88149282-88149301 | None:intergenic | 45.0% | |
| TGTGGAGTCAGATACAAGTC+AGG | - | chr3.1:88149478-88149497 | MS.gene014628:CDS | 45.0% | |
| TTCGAAAGTGGGGTCTTCAA+TGG | + | chr3.1:88147396-88147415 | None:intergenic | 45.0% | |
| TTGCACCTTTCGATGTGAGT+TGG | + | chr3.1:88149563-88149582 | None:intergenic | 45.0% | |
| ! | GACACTTGAGGGTGTATTGT+TGG | + | chr3.1:88149199-88149218 | None:intergenic | 45.0% |
| ! | GAGGTCTCTTTTTCTTGGAG+AGG | + | chr3.1:88149359-88149378 | None:intergenic | 45.0% |
| ! | TCACCGAGGTCTCTTTTTCT+TGG | + | chr3.1:88149364-88149383 | None:intergenic | 45.0% |
| !! | GAAGTGGGATTGGTTTCAAG+AGG | + | chr3.1:88147452-88147471 | None:intergenic | 45.0% |
| !! | AATAATTACTATATATATAA+TGG | + | chr3.1:88147555-88147574 | None:intergenic | 5.0% |
| !! | TATAAATATATGATAAAAAA+AGG | + | chr3.1:88148159-88148178 | None:intergenic | 5.0% |
| !! | TATAGTTAAAAAAAAATATA+GGG | + | chr3.1:88148494-88148513 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATTATATTTGA+TGG | + | chr3.1:88148662-88148681 | None:intergenic | 5.0% |
| !!! | TAAAATGAATATTATTTTTA+AGG | - | chr3.1:88147926-88147945 | MS.gene014628:intron | 5.0% |
| ACGCCAGAAGGAGATGATGA+GGG | - | chr3.1:88149591-88149610 | MS.gene014628:CDS | 50.0% | |
| AGAATGTTAACCAGTGCCCC+GGG | - | chr3.1:88147949-88147968 | MS.gene014628:intron | 50.0% | |
| AGAGTGAGAAGATGTGGTGG+TGG | + | chr3.1:88149311-88149330 | None:intergenic | 50.0% | |
| CACACGTGACCGTTTACTAC+GGG | + | chr3.1:88149236-88149255 | None:intergenic | 50.0% | |
| CCACTGATAAGACTCCACAG+TGG | - | chr3.1:88149416-88149435 | MS.gene014628:intron | 50.0% | |
| CGGCAAAAGCCCGTAGTAAA+CGG | - | chr3.1:88149224-88149243 | MS.gene014628:intron | 50.0% | |
| GAGAATGTTAACCAGTGCCC+CGG | - | chr3.1:88147948-88147967 | MS.gene014628:intron | 50.0% | |
| GATTCTTAACAAGTGCCCCG+GGG | - | chr3.1:88148079-88148098 | MS.gene014628:intron | 50.0% | |
| GCACACGTGACCGTTTACTA+CGG | + | chr3.1:88149237-88149256 | None:intergenic | 50.0% | |
| GCACTCCAACTCACATCGAA+AGG | - | chr3.1:88149555-88149574 | MS.gene014628:CDS | 50.0% | |
| GGATTCTTAACAAGTGCCCC+GGG | - | chr3.1:88148078-88148097 | MS.gene014628:intron | 50.0% | |
| GGTGTCAGAGTGAGAAGATG+TGG | + | chr3.1:88149317-88149336 | None:intergenic | 50.0% | |
| GTCAGAGTGAGAAGATGTGG+TGG | + | chr3.1:88149314-88149333 | None:intergenic | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | + | chr3.1:88147970-88147989 | None:intergenic | 50.0% | |
| TCATCATCTCCTTCTGGCGT+CGG | + | chr3.1:88149591-88149610 | None:intergenic | 50.0% | |
| TGTCTTTGGACCTAATGGCC+CGG | + | chr3.1:88149446-88149465 | None:intergenic | 50.0% | |
| ! | AAAAGAGACCTCGGTGATGG+AGG | - | chr3.1:88149367-88149386 | MS.gene014628:intron | 50.0% |
| ! | CCACTGTGGAGTCTTATCAG+TGG | + | chr3.1:88149419-88149438 | None:intergenic | 50.0% |
| ! | CGTTTACTACGGGCTTTTGC+CGG | + | chr3.1:88149226-88149245 | None:intergenic | 50.0% |
| ! | GTTTACTACGGGCTTTTGCC+GGG | + | chr3.1:88149225-88149244 | None:intergenic | 50.0% |
| !! | ACAAATGTTGGGCTTGCTGC+AGG | + | chr3.1:88149526-88149545 | None:intergenic | 50.0% |
| !! | GTCGACTCGTACCTGAGTAT+AGG | - | chr3.1:88149500-88149519 | MS.gene014628:CDS | 50.0% |
| !! | GTGGGATTGGTTTCAAGAGG+AGG | + | chr3.1:88147449-88147468 | None:intergenic | 50.0% |
| !!! | CTTGGAGAGGGCTTTTTTGG+TGG | + | chr3.1:88149346-88149365 | None:intergenic | 50.0% |
| ACACCCTCAAGTGTCTGTCC+CGG | - | chr3.1:88149204-88149223 | MS.gene014628:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | + | chr3.1:88147969-88147988 | None:intergenic | 55.0% | |
| CTTGCTGCAGGCCTATACTC+AGG | + | chr3.1:88149514-88149533 | None:intergenic | 55.0% | |
| GAATGTTAACCAGTGCCCCG+GGG | - | chr3.1:88147950-88147969 | MS.gene014628:intron | 55.0% | |
| GACGCCAGAAGGAGATGATG+AGG | - | chr3.1:88149590-88149609 | MS.gene014628:CDS | 55.0% | |
| GTCGGATTGTGGACAGAAGC+TGG | + | chr3.1:88147285-88147304 | None:intergenic | 55.0% | |
| TCGTGCCAGAATTCTGCCGA+CGG | - | chr3.1:88147494-88147513 | MS.gene014628:CDS | 55.0% | |
| TGAAGGACCATCCAACGGTG+AGG | - | chr3.1:88149663-88149682 | MS.gene014628:CDS | 55.0% | |
| TTGCCGGGACAGACACTTGA+GGG | + | chr3.1:88149210-88149229 | None:intergenic | 55.0% | |
| TTTGCCGGGACAGACACTTG+AGG | + | chr3.1:88149211-88149230 | None:intergenic | 55.0% | |
| !! | AGATGTGGTGGTGGTGGTCA+TGG | + | chr3.1:88149302-88149321 | None:intergenic | 55.0% |
| !! | GTGAGAAGATGTGGTGGTGG+TGG | + | chr3.1:88149308-88149327 | None:intergenic | 55.0% |
| !!! | GGGCTTTTTTGGTGGAGCCA+TGG | + | chr3.1:88149338-88149357 | None:intergenic | 55.0% |
| AAGACTCCACAGTGGCGCAC+CGG | - | chr3.1:88149424-88149443 | MS.gene014628:intron | 60.0% | |
| AAGGGCCGTCGGCAGAATTC+TGG | + | chr3.1:88147502-88147521 | None:intergenic | 60.0% | |
| ACGGAGAGTTCGCCGGAGAA+AGG | + | chr3.1:88147521-88147540 | None:intergenic | 60.0% | |
| AGGCGCGAAGTCCAGTTGCA+TGG | + | chr3.1:88149262-88149281 | None:intergenic | 60.0% | |
| CACGTGTGCCTCCATGCAAC+TGG | - | chr3.1:88149248-88149267 | MS.gene014628:intron | 60.0% | |
| CGCGAAGTCCAGTTGCATGG+AGG | + | chr3.1:88149259-88149278 | None:intergenic | 60.0% | |
| CGGAGAGTTCGCCGGAGAAA+GGG | + | chr3.1:88147520-88147539 | None:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | + | chr3.1:88147968-88147987 | None:intergenic | 60.0% | |
| GGGCCCTCATCATCTCCTTC+TGG | + | chr3.1:88149597-88149616 | None:intergenic | 60.0% | |
| TACCGGAACGGAGAGTTCGC+CGG | + | chr3.1:88147528-88147547 | None:intergenic | 60.0% | |
| !! | AGACCTCGGTGATGGAGGAG+AGG | - | chr3.1:88149372-88149391 | MS.gene014628:intron | 60.0% |
| !! | GACCTCGGTGATGGAGGAGA+GGG | - | chr3.1:88149373-88149392 | MS.gene014628:intron | 60.0% |
| !! | GTGGTGGTGGTGGTCATGGT+TGG | + | chr3.1:88149298-88149317 | None:intergenic | 60.0% |
| AGACTCCACAGTGGCGCACC+GGG | - | chr3.1:88149425-88149444 | MS.gene014628:intron | 65.0% | |
| CTCCGGCGAACTCTCCGTTC+CGG | - | chr3.1:88147523-88147542 | MS.gene014628:CDS | 65.0% | |
| GACCCTCTCCTCCATCACCG+AGG | + | chr3.1:88149378-88149397 | None:intergenic | 65.0% | |
| GCAAGAGCTCCGACGCCAGA+AGG | - | chr3.1:88149579-88149598 | MS.gene014628:CDS | 65.0% | |
| TAACCAATGCCCCGGGGCAC+TGG | + | chr3.1:88147962-88147981 | None:intergenic | 65.0% | |
| TAACCAGTGCCCCGGGGCAT+TGG | - | chr3.1:88147956-88147975 | MS.gene014628:intron | 65.0% | |
| TCTGCCGACGGCCCTTTCTC+CGG | - | chr3.1:88147506-88147525 | MS.gene014628:CDS | 65.0% | |
| TTCGCCGGAGAAAGGGCCGT+CGG | + | chr3.1:88147513-88147532 | None:intergenic | 65.0% | |
| AATGGCCCGGTGCGCCACTG+TGG | + | chr3.1:88149433-88149452 | None:intergenic | 70.0% | |
| CAGTGGCGCACCGGGCCATT+AGG | - | chr3.1:88149433-88149452 | MS.gene014628:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 88147257 | 88149735 | 88147257 | ID=MS.gene014628 |
| chr3.1 | mRNA | 88147257 | 88149735 | 88147257 | ID=MS.gene014628.t1;Parent=MS.gene014628 |
| chr3.1 | exon | 88149448 | 88149735 | 88149448 | ID=MS.gene014628.t1.exon1;Parent=MS.gene014628.t1 |
| chr3.1 | CDS | 88149448 | 88149735 | 88149448 | ID=cds.MS.gene014628.t1;Parent=MS.gene014628.t1 |
| chr3.1 | exon | 88147257 | 88147940 | 88147257 | ID=MS.gene014628.t1.exon2;Parent=MS.gene014628.t1 |
| chr3.1 | CDS | 88147257 | 88147940 | 88147257 | ID=cds.MS.gene014628.t1;Parent=MS.gene014628.t1 |
| Gene Sequence |
| Protein sequence |
