AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014645


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014645.t1 MTR_3g110180 95.853 434 6 2 1 426 1 430 0.0 858
MS.gene014645.t1 MTR_3g110180 95.622 434 6 3 1 426 1 429 0.0 825
MS.gene014645.t1 MTR_1g004990 60.417 432 152 3 1 424 1 421 0.0 523
MS.gene014645.t1 MTR_6g087070 62.044 411 132 6 1 400 1 398 0.0 513
MS.gene014645.t1 MTR_8g102930 59.039 437 155 6 1 426 1 424 5.83e-177 501
MS.gene014645.t1 MTR_4g126010 64.162 346 109 3 1 337 1 340 1.68e-163 468
MS.gene014645.t1 MTR_2g099670 65.205 342 108 3 1 331 1 342 2.54e-163 468
MS.gene014645.t1 MTR_1g069720 66.352 318 99 1 1 310 1 318 4.24e-160 459
MS.gene014645.t1 MTR_1g042280 67.752 307 91 1 1 299 2 308 1.71e-157 452
MS.gene014645.t1 MTR_7g097160 65.312 320 103 1 1 312 1 320 6.66e-157 451
MS.gene014645.t1 MTR_2g039930 58.933 375 129 6 1 356 1 369 1.52e-156 451
MS.gene014645.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 2.33e-156 450
MS.gene014645.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 1.75e-155 446
MS.gene014645.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 2.20e-155 442
MS.gene014645.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 2.29e-154 445
MS.gene014645.t1 MTR_1g042280 70.149 268 80 0 32 299 9 276 9.31e-145 414
MS.gene014645.t1 MTR_0492s0030 65.000 300 95 2 1 290 1 300 1.96e-140 406
MS.gene014645.t1 MTR_0543s0020 65.000 300 95 2 1 290 1 300 1.96e-140 406
MS.gene014645.t1 MTR_2g099670 68.214 280 86 2 55 331 11 290 3.93e-140 407
MS.gene014645.t1 MTR_1g075870 68.045 266 77 1 50 315 2 259 4.18e-134 387
MS.gene014645.t1 MTR_2g039930 60.204 294 100 5 74 356 1 288 1.11e-122 362
MS.gene014645.t1 MTR_7g097160 68.927 177 55 0 136 312 25 201 2.61e-85 264
MS.gene014645.t1 MTR_3g110240 37.121 264 155 5 7 265 133 390 7.91e-51 182
MS.gene014645.t1 MTR_1g007150 36.364 264 157 5 7 265 136 393 7.45e-50 179
MS.gene014645.t1 MTR_7g006030 35.206 267 162 5 7 265 49 312 8.55e-50 178
MS.gene014645.t1 MTR_7g085540 36.296 270 162 5 7 269 159 425 2.59e-49 178
MS.gene014645.t1 MTR_1g116210 34.286 280 162 6 5 265 113 389 2.94e-47 172
MS.gene014645.t1 MTR_8g014050 34.444 270 161 7 7 265 140 404 1.47e-42 159
MS.gene014645.t1 MTR_7g116400 52.308 65 30 1 74 137 3 67 7.64e-16 72.8
MS.gene014645.t1 MTR_7g118020 26.728 217 133 5 6 205 141 348 7.21e-12 67.8
MS.gene014645.t1 MTR_4g086660 29.448 163 105 3 44 205 188 341 7.91e-12 67.4
MS.gene014645.t1 MTR_7g073520 32.800 125 71 3 99 221 250 363 8.38e-12 67.4
MS.gene014645.t1 MTR_8g079790 28.221 163 107 3 44 205 179 332 1.48e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014645.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene014645.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene014645.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene014645.t1 AT4G28880 59.346 428 145 6 1 416 1 411 5.05e-178 503
MS.gene014645.t1 AT4G28860 59.569 418 144 5 1 409 1 402 2.60e-176 499
MS.gene014645.t1 AT4G28860 71.384 318 83 1 1 310 1 318 7.65e-175 494
MS.gene014645.t1 AT4G26100 55.422 415 143 9 1 399 1 389 2.67e-159 457
MS.gene014645.t1 AT5G57015 64.308 325 106 2 1 315 1 325 1.34e-156 449
MS.gene014645.t1 AT1G72710 64.329 328 107 3 1 319 1 327 1.42e-156 451
MS.gene014645.t1 AT5G44100 69.360 297 83 1 1 289 1 297 1.84e-155 448
MS.gene014645.t1 AT5G44100 69.360 297 83 1 1 289 1 297 1.84e-155 448
MS.gene014645.t1 AT1G03930 67.340 297 89 1 1 289 1 297 1.97e-154 445
MS.gene014645.t1 AT4G28540 68.121 298 87 1 1 290 5 302 4.38e-154 445
MS.gene014645.t1 AT3G23340 64.688 320 104 2 1 312 1 319 5.93e-154 443
MS.gene014645.t1 AT2G19470 62.614 329 108 2 1 321 1 322 2.17e-153 441
MS.gene014645.t1 AT4G14340 64.062 320 106 2 1 312 7 325 6.82e-152 438
MS.gene014645.t1 AT4G14340 62.090 335 111 2 1 327 7 333 9.54e-152 434
MS.gene014645.t1 AT5G43320 68.013 297 87 1 1 289 1 297 2.26e-150 435
MS.gene014645.t1 AT3G23340 64.423 312 104 2 1 312 1 305 8.44e-150 432
MS.gene014645.t1 AT5G43320 61.383 347 122 3 1 339 1 343 1.44e-149 429
MS.gene014645.t1 AT5G43320 61.383 347 122 3 1 339 1 343 1.44e-149 429
MS.gene014645.t1 AT1G04440 67.340 297 89 1 1 289 1 297 2.20e-148 430
MS.gene014645.t1 AT4G08800 58.163 294 83 3 1 286 1 262 9.53e-121 353
MS.gene014645.t1 AT3G13670 35.424 271 164 5 7 269 149 416 1.51e-50 182
MS.gene014645.t1 AT2G25760 36.194 268 162 4 7 265 119 386 2.27e-50 181
MS.gene014645.t1 AT3G03940 36.296 270 162 5 7 269 152 418 2.44e-50 181
MS.gene014645.t1 AT2G25760 36.567 268 158 5 7 265 119 383 7.72e-50 179
MS.gene014645.t1 AT5G18190 35.662 272 165 5 7 271 142 410 3.00e-49 178
MS.gene014645.t1 AT5G18190 35.662 272 165 5 7 271 142 410 3.00e-49 178
MS.gene014645.t1 AT3G50530 30.061 163 104 3 44 205 199 352 2.48e-13 72.4
MS.gene014645.t1 AT3G49370 28.440 218 130 6 7 207 140 348 1.04e-11 67.4
MS.gene014645.t1 AT3G50530 28.495 186 108 6 44 205 199 383 3.84e-11 65.5
MS.gene014645.t1 AT5G24430 27.854 219 130 6 7 207 141 349 3.97e-11 65.5
MS.gene014645.t1 AT2G46700 29.082 196 118 5 11 205 172 347 9.51e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTTCCTGTGGGCCTTTC+AGG 0.062348 3.1:-87892012 None:intergenic
TCAAACCTAGGTCGTGTATT+TGG 0.098979 3.1:+87892033 MS.gene014645:CDS
AGGAATATGCTTGCTTGTTT+TGG 0.195324 3.1:-87888750 None:intergenic
TATTCTGGTTATGGATCTTC+TGG 0.212846 3.1:+87888160 MS.gene014645:CDS
TTTGATCAAGATCCAGATTA+TGG 0.217415 3.1:+87890282 MS.gene014645:CDS
TTGGAGAAGACTGTATAATT+TGG 0.243957 3.1:-87887987 None:intergenic
GAATCCAGCTGCTTGAAATA+TGG 0.275973 3.1:-87892065 None:intergenic
CAAGCAAGCATATTCCTTAT+AGG 0.278492 3.1:+87888756 MS.gene014645:CDS
ATAACTTCCTAATGGGTATT+AGG 0.293154 3.1:+87888555 MS.gene014645:CDS
GCAGCTGGATTCCTTCTTTA+CGG 0.295950 3.1:+87892076 MS.gene014645:CDS
AGAGAGAATAAAAGTTTAAC+AGG 0.303019 3.1:+87889546 MS.gene014645:intron
CAAACCTAGGTCGTGTATTT+GGG 0.321394 3.1:+87892034 MS.gene014645:CDS
GCAAAGTCGCCGTGATGATT+TGG 0.329153 3.1:+87889692 MS.gene014645:CDS
ATACCCATTAGGAAGTTATC+TGG 0.331317 3.1:-87888551 None:intergenic
TAGGTTTATATTATTGATTT+CGG 0.339874 3.1:+87888704 MS.gene014645:intron
TGATGGAGATCATAATATTC+TGG 0.354764 3.1:+87888145 MS.gene014645:CDS
GGATCTTCTGGGACGTAGTC+TGG 0.355238 3.1:+87888172 MS.gene014645:CDS
AGCATTTAGATTCTTTAGAT+TGG 0.357090 3.1:-87891705 None:intergenic
CAAACCAGATAACTTCCTAA+TGG 0.358154 3.1:+87888547 MS.gene014645:CDS
CGCTTTAAGAATCCATAATC+TGG 0.362175 3.1:-87890294 None:intergenic
GTCCTTATGTACTTCTTAAG+AGG 0.366081 3.1:+87889729 MS.gene014645:CDS
AACAACAAAATATACCTATA+AGG 0.367234 3.1:-87888770 None:intergenic
CGTGATGATTTGGAGTCTAT+TGG 0.367974 3.1:+87889702 MS.gene014645:CDS
AGATCATAATATTCTGGTTA+TGG 0.373211 3.1:+87888151 MS.gene014645:CDS
TGAGGTCGTTGCCGTCAAAA+TGG 0.379560 3.1:+87887466 MS.gene014645:CDS
TTTAAGATTGGTCGCAAAAT+CGG 0.381240 3.1:+87887302 MS.gene014645:CDS
TATATTATTGATTTCGGACT+AGG 0.399991 3.1:+87888710 MS.gene014645:CDS
CACATTTGGACGATCAAGAT+TGG 0.402023 3.1:-87891663 None:intergenic
TTAGGCTGCACACGCACATT+TGG 0.429031 3.1:-87891677 None:intergenic
AAACCAGATAACTTCCTAAT+GGG 0.430261 3.1:+87888548 MS.gene014645:CDS
TTTATAACTTACTTTCTCCT+TGG 0.432685 3.1:-87888006 None:intergenic
AATCCAGCTGCTTGAAATAT+GGG 0.440658 3.1:-87892064 None:intergenic
ACTCCCATATTTCAAGCAGC+TGG 0.449190 3.1:+87892061 MS.gene014645:CDS
TGCTCCCGCAGAAGACAAAA+AGG 0.451965 3.1:-87888199 None:intergenic
TTTAGATTCTTTAGATTGGA+TGG 0.456240 3.1:-87891701 None:intergenic
GTTGGCGGAAAGTTTAAGAT+TGG 0.473575 3.1:+87887290 MS.gene014645:CDS
ATTCTGGTTATGGATCTTCT+GGG 0.476383 3.1:+87888161 MS.gene014645:CDS
ACTATGACAATTTATTCGAC+TGG 0.479555 3.1:+87890894 MS.gene014645:CDS
TGCAATACTCACTTAGGAAT+CGG 0.487644 3.1:+87889588 MS.gene014645:CDS
TTCTTTAGATTGGATGGCTT+AGG 0.488699 3.1:-87891695 None:intergenic
TTCCTCTTAAGAAGTACATA+AGG 0.490195 3.1:-87889731 None:intergenic
GAAGAAATTCGCCGTAAAGA+AGG 0.496549 3.1:-87892087 None:intergenic
CAGTCTACAACCAGTGGTTG+TGG 0.500770 3.1:+87891157 MS.gene014645:CDS
GTACCGCACCATCTCATAGT+TGG 0.509024 3.1:-87888122 None:intergenic
TCTAAATGCTAAGAATCATA+CGG 0.510015 3.1:+87891718 MS.gene014645:CDS
CGTGAGTTGTTCACTCGTGA+AGG 0.516158 3.1:+87890324 MS.gene014645:CDS
AATAGAGTACATGCATTCCA+AGG 0.528223 3.1:+87888505 MS.gene014645:CDS
GCATCCACAACTATTGTATG+AGG 0.532224 3.1:+87887964 MS.gene014645:CDS
GCAAGTTGCAATACTCACTT+AGG 0.533425 3.1:+87889582 MS.gene014645:CDS
AACATGGAGTGGGTCGTTGG+CGG 0.534619 3.1:+87887275 None:intergenic
ACCTAGGTTTGAAGTTCCTG+TGG 0.540684 3.1:-87892022 None:intergenic
TATTAGGAGAAAATCAAGTC+AGG 0.540941 3.1:+87888571 MS.gene014645:CDS
TTGGCCTCATACAATAGTTG+TGG 0.548570 3.1:-87887968 None:intergenic
CAATGATCCGTCCACTTCAT+CGG 0.549710 3.1:+87891954 MS.gene014645:CDS
TTATGTACTTCTTAAGAGGA+AGG 0.553282 3.1:+87889733 MS.gene014645:CDS
CTTTCAGACCCTGCCAAGGA+AGG 0.558293 3.1:-87889882 None:intergenic
ATGAGATGGTGCGGTACTGA+TGG 0.560221 3.1:+87888128 MS.gene014645:CDS
AACAACATGGAGTGGGTCGT+TGG 0.562685 3.1:+87887272 None:intergenic
TTTGATGTTAGCAGACCAGA+TGG 0.566646 3.1:+87888241 MS.gene014645:CDS
TGTAGGAGAAGAAGAGAACA+AGG 0.572961 3.1:+87887942 MS.gene014645:intron
CTAAATGCTAAGAATCATAC+GGG 0.574445 3.1:+87891719 MS.gene014645:CDS
GAATAAAAGTTTAACAGGGA+CGG 0.577039 3.1:+87889551 MS.gene014645:CDS
TTTGGGCAAAGCCGATGAAG+TGG 0.584387 3.1:-87891965 None:intergenic
TCTAAGCCTGAAAGGCCCAC+AGG 0.585651 3.1:+87892006 MS.gene014645:CDS
GCACTAGGTACGGCATCTGA+AGG 0.595661 3.1:-87891113 None:intergenic
TATTCCCAAATACACGACCT+AGG 0.597805 3.1:-87892038 None:intergenic
AAAGTAAGACGCAAACTCCA+CGG 0.599632 3.1:-87890238 None:intergenic
CATCCGCTAACAACATGGAG+TGG 0.601509 3.1:+87887264 None:intergenic
AAGTAAGACGCAAACTCCAC+GGG 0.604948 3.1:-87890237 None:intergenic
CCTAGGTTTGAAGTTCCTGT+GGG 0.606084 3.1:-87892021 None:intergenic
ACTAGGAACAGCACTAGGTA+CGG 0.607129 3.1:-87891123 None:intergenic
ACCACTGGTTGTAGACTGCT+AGG 0.607910 3.1:-87891152 None:intergenic
ATCAGCAGACGCAACAGACA+AGG 0.613053 3.1:+87890930 MS.gene014645:CDS
ATCCGCTAACAACATGGAGT+GGG 0.614583 3.1:+87887265 None:intergenic
TGGATCTTGATCAAATGTCA+AGG 0.615184 3.1:-87890274 None:intergenic
GTGGTATTCCAACTATGAGA+TGG 0.615515 3.1:+87888114 MS.gene014645:CDS
AGACTGCTAGGCACAGCACT+AGG 0.616647 3.1:-87891140 None:intergenic
AAGGAGACAAAAGCAATCAT+CGG 0.624317 3.1:+87890949 MS.gene014645:CDS
ATTGGTCGCAAAATCGGAAG+CGG 0.626522 3.1:+87887308 MS.gene014645:CDS
CTCAGAGGTGTCCATATCAG+AGG 0.626948 3.1:-87887447 None:intergenic
GGCAAAGCCGATGAAGTGGA+CGG 0.627991 3.1:-87891961 None:intergenic
AAAATGTCTCTAAGCCTGAA+AGG 0.629959 3.1:+87891998 MS.gene014645:CDS
CCCACAGGAACTTCAAACCT+AGG 0.637853 3.1:+87892021 MS.gene014645:CDS
AAATTATACAGTCTTCTCCA+AGG 0.638640 3.1:+87887989 MS.gene014645:CDS
GCCTAGCAGTCTACAACCAG+TGG 0.640292 3.1:+87891151 MS.gene014645:CDS
ACAGCTTTCAGACCCTGCCA+AGG 0.644712 3.1:-87889886 None:intergenic
ATTGAAAATGTATACCTCAG+TGG 0.646544 3.1:-87889959 None:intergenic
TCTTCTGGGACGTAGTCTGG+AGG 0.649427 3.1:+87888175 MS.gene014645:CDS
TCTGAAAGCTGTCACCAAAG+AGG 0.650261 3.1:+87889897 MS.gene014645:CDS
ACAGCACTAGGAACAGCACT+AGG 0.656993 3.1:-87891128 None:intergenic
ATAGAGTACATGCATTCCAA+GGG 0.660373 3.1:+87888506 MS.gene014645:CDS
GCTTTGCGAATCATATCCCG+TGG 0.663642 3.1:+87890221 MS.gene014645:CDS
CTCTGATATGGACACCTCTG+AGG 0.669495 3.1:+87887448 MS.gene014645:CDS
CAATAGACTCCAAATCATCA+CGG 0.670210 3.1:-87889701 None:intergenic
ATTCCAACTATGAGATGGTG+CGG 0.673968 3.1:+87888119 MS.gene014645:CDS
GAGAGAATAAAAGTTTAACA+GGG 0.702224 3.1:+87889547 MS.gene014645:intron
TTTGACGGCAACGACCTCAG+AGG 0.711927 3.1:-87887462 None:intergenic
GAAGTTATCAACTTCCACTG+AGG 0.761442 3.1:+87889945 MS.gene014645:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATAATAATAATAACA+AGG - chr3.1:87891464-87891483 None:intergenic 10.0%
!!! ACATTTTGAATTTTAAAAAA+TGG + chr3.1:87889787-87889806 MS.gene014645:intron 10.0%
!!! ATATTTCTAATCTTTTATTA+TGG + chr3.1:87888804-87888823 MS.gene014645:intron 10.0%
!!! TATTATTATTATTTTTCACT+TGG + chr3.1:87891467-87891486 MS.gene014645:intron 10.0%
!! AAAAAAATGTCTAAATTTGA+TGG + chr3.1:87889159-87889178 MS.gene014645:intron 15.0%
!! AAATAAACTTCTTATTACAT+CGG - chr3.1:87890849-87890868 None:intergenic 15.0%
!! TGATATTAATTATTCTTCAT+TGG + chr3.1:87888993-87889012 MS.gene014645:intron 15.0%
!!! ATTCTTTTTAGGTAAATTTA+GGG + chr3.1:87889832-87889851 MS.gene014645:intron 15.0%
!!! TAAACAAATCAAGTATTTTT+AGG - chr3.1:87888865-87888884 None:intergenic 15.0%
!!! TAGGTTTATATTATTGATTT+CGG + chr3.1:87888704-87888723 MS.gene014645:intron 15.0%
!!! TTGTTTTGATTTTTTTTACT+TGG + chr3.1:87891886-87891905 MS.gene014645:intron 15.0%
!! AAAATTAAGAAGAAATCCAA+TGG - chr3.1:87891779-87891798 None:intergenic 20.0%
!! AACAACAAAATATACCTATA+AGG - chr3.1:87888773-87888792 None:intergenic 20.0%
!! AATAAACTTCTTATTACATC+GGG - chr3.1:87890848-87890867 None:intergenic 20.0%
!! AATAATAACAAGGAATTTGT+TGG - chr3.1:87891454-87891473 None:intergenic 20.0%
!! AATCAGGAAAGTTTAATAAT+CGG - chr3.1:87891055-87891074 None:intergenic 20.0%
!! ATCATAAAATGTTAGATAGT+TGG - chr3.1:87890638-87890657 None:intergenic 20.0%
!! CAAAATAGAATGAAATTTGT+GGG - chr3.1:87889656-87889675 None:intergenic 20.0%
!! GAAATTAAAAACTAGATTGA+GGG - chr3.1:87890008-87890027 None:intergenic 20.0%
!! GATGTAATAAGAAGTTTATT+TGG + chr3.1:87890848-87890867 MS.gene014645:intron 20.0%
!! GTAAGAAAATTACAATGAAT+GGG - chr3.1:87889769-87889788 None:intergenic 20.0%
!! TAGACCATAAAAATGTTTAA+AGG - chr3.1:87890993-87891012 None:intergenic 20.0%
!! TGTAAGAAAATTACAATGAA+TGG - chr3.1:87889770-87889789 None:intergenic 20.0%
!! TTTAAGTAATTACTGTCAAT+TGG + chr3.1:87890377-87890396 MS.gene014645:intron 20.0%
!!! AACAATATTAAGAGCTTTTA+AGG + chr3.1:87890083-87890102 MS.gene014645:intron 20.0%
!!! AACATTAAAGTATTAACGTA+AGG - chr3.1:87889236-87889255 None:intergenic 20.0%
!!! AAGTTATAAAAGAAGCATTT+GGG + chr3.1:87888019-87888038 MS.gene014645:intron 20.0%
!!! AATTTTTGGATATAGAGTAA+TGG - chr3.1:87890676-87890695 None:intergenic 20.0%
!!! ACATTAAAGTATTAACGTAA+GGG - chr3.1:87889235-87889254 None:intergenic 20.0%
!!! ATATCCAAAAATTCATGTTT+TGG + chr3.1:87890683-87890702 MS.gene014645:intron 20.0%
!!! ATGATAATTTGCTTATTAGT+TGG + chr3.1:87890431-87890450 MS.gene014645:intron 20.0%
!!! ATGATATTAAATATGGCTTT+TGG + chr3.1:87888326-87888345 MS.gene014645:intron 20.0%
!!! ATTTCCAAAACATGAATTTT+TGG - chr3.1:87890690-87890709 None:intergenic 20.0%
!!! CATTCTTTTTAGGTAAATTT+AGG + chr3.1:87889831-87889850 MS.gene014645:intron 20.0%
!!! TAAGTTATAAAAGAAGCATT+TGG + chr3.1:87888018-87888037 MS.gene014645:intron 20.0%
!!! TAGGTATTTTTTGCTTATAA+TGG + chr3.1:87889286-87889305 MS.gene014645:intron 20.0%
!!! TCATGTTTTTACATGTTATA+AGG + chr3.1:87888828-87888847 MS.gene014645:intron 20.0%
!!! TCATTTGGTGAAATTTATAT+AGG + chr3.1:87887332-87887351 MS.gene014645:intron 20.0%
!!! TGAAAGTGTGTAAAAAATAA+AGG - chr3.1:87887852-87887871 None:intergenic 20.0%
!!! TGAACCTTTAAACATTTTTA+TGG + chr3.1:87890986-87891005 MS.gene014645:intron 20.0%
!!! TTCCTTGATGATATTAAATA+TGG + chr3.1:87888319-87888338 MS.gene014645:intron 20.0%
! AAAACTGCTACTATATTGAT+AGG - chr3.1:87888373-87888392 None:intergenic 25.0%
! AAGAAAGGTTAAATACTTAG+TGG - chr3.1:87890499-87890518 None:intergenic 25.0%
! AAGACATATGAAACGAATTA+TGG - chr3.1:87888654-87888673 None:intergenic 25.0%
! AGACATATGAAACGAATTAT+GGG - chr3.1:87888653-87888672 None:intergenic 25.0%
! AGAGAGAATAAAAGTTTAAC+AGG + chr3.1:87889546-87889565 MS.gene014645:intron 25.0%
! AGCATTTAGATTCTTTAGAT+TGG - chr3.1:87891708-87891727 None:intergenic 25.0%
! AGCCATATTTAATATCATCA+AGG - chr3.1:87888324-87888343 None:intergenic 25.0%
! AGTTTAACTAGTCAAGTTAA+TGG + chr3.1:87889491-87889510 MS.gene014645:intron 25.0%
! ATAAACTTCTTATTACATCG+GGG - chr3.1:87890847-87890866 None:intergenic 25.0%
! ATCAGGAAAGTTTAATAATC+GGG - chr3.1:87891054-87891073 None:intergenic 25.0%
! CACAAAATTTGCATAACTAA+AGG - chr3.1:87890528-87890547 None:intergenic 25.0%
! CATTGGATAACAGTTAATAA+AGG + chr3.1:87889010-87889029 MS.gene014645:intron 25.0%
! CCAAAATAGAATGAAATTTG+TGG - chr3.1:87889657-87889676 None:intergenic 25.0%
! GAGAGAATAAAAGTTTAACA+GGG + chr3.1:87889547-87889566 MS.gene014645:intron 25.0%
! GGAAATTAAAAACTAGATTG+AGG - chr3.1:87890009-87890028 None:intergenic 25.0%
! GTTAATACTTTAATGTTGTG+AGG + chr3.1:87889239-87889258 MS.gene014645:intron 25.0%
! TAAATTCTAACTCATTCTAC+TGG - chr3.1:87891318-87891337 None:intergenic 25.0%
! TACAAAATGTTGATCTCATT+AGG - chr3.1:87887612-87887631 None:intergenic 25.0%
! TCTAAATGCTAAGAATCATA+CGG + chr3.1:87891718-87891737 MS.gene014645:CDS 25.0%
! TCTAAATTCATTATCTTCAC+TGG + chr3.1:87888602-87888621 MS.gene014645:intron 25.0%
! TTATCAAGGTCAAAACATTA+GGG - chr3.1:87889518-87889537 None:intergenic 25.0%
! TTCTATTCAACATTCATATG+CGG + chr3.1:87887396-87887415 MS.gene014645:intron 25.0%
! TTTAGATTCTTTAGATTGGA+TGG - chr3.1:87891704-87891723 None:intergenic 25.0%
! TTTATAACTTACTTTCTCCT+TGG - chr3.1:87888009-87888028 None:intergenic 25.0%
! TTTATCAAGGTCAAAACATT+AGG - chr3.1:87889519-87889538 None:intergenic 25.0%
!! AAAGAAACAAACCATTTTGA+CGG - chr3.1:87887480-87887499 None:intergenic 25.0%
!! AGATCATAATATTCTGGTTA+TGG + chr3.1:87888151-87888170 MS.gene014645:CDS 25.0%
!! ATCAATTGCACATTCTTTTT+AGG + chr3.1:87889821-87889840 MS.gene014645:intron 25.0%
!! ATCTCAAATAATTCCTTTTC+CGG + chr3.1:87889418-87889437 MS.gene014645:intron 25.0%
!! ATGAGATCAACATTTTGTAT+CGG + chr3.1:87887613-87887632 MS.gene014645:intron 25.0%
!! CCACAAATTTCATTCTATTT+TGG + chr3.1:87889654-87889673 MS.gene014645:intron 25.0%
!! TCTATTTACAAAAGTTCTAG+AGG + chr3.1:87888889-87888908 MS.gene014645:intron 25.0%
!! TTTTAATGCTCATTGCAAAA+CGG + chr3.1:87891346-87891365 MS.gene014645:intron 25.0%
!!! ATTATTTTTCACTTGGAAGT+TGG + chr3.1:87891474-87891493 MS.gene014645:intron 25.0%
!!! CTGCAATTTGTTACATTTAT+AGG + chr3.1:87888685-87888704 MS.gene014645:intron 25.0%
!!! GCTACATTTCTTTATTTTGT+AGG + chr3.1:87887925-87887944 MS.gene014645:intron 25.0%
!!! TATATTATTGATTTCGGACT+AGG + chr3.1:87888710-87888729 MS.gene014645:CDS 25.0%
!!! TGAATTATTGATTCCTGAAA+AGG - chr3.1:87891615-87891634 None:intergenic 25.0%
!!! TGCTTGCTTTATTTTTCAAT+TGG + chr3.1:87888287-87888306 MS.gene014645:intron 25.0%
AAACCAGATAACTTCCTAAT+GGG + chr3.1:87888548-87888567 MS.gene014645:CDS 30.0%
AAATTATACAGTCTTCTCCA+AGG + chr3.1:87887989-87888008 MS.gene014645:CDS 30.0%
AACGAATTCTGTTCAATTGT+GGG + chr3.1:87891236-87891255 MS.gene014645:intron 30.0%
AACTAAAGGAGAAAGAAGAA+AGG - chr3.1:87890514-87890533 None:intergenic 30.0%
ACCATAATAAGTTTGGAAGT+AGG + chr3.1:87889267-87889286 MS.gene014645:intron 30.0%
ACCTACTTCCAAACTTATTA+TGG - chr3.1:87889271-87889290 None:intergenic 30.0%
ACTATGACAATTTATTCGAC+TGG + chr3.1:87890894-87890913 MS.gene014645:CDS 30.0%
AGATTACACAGATTACAAGT+TGG - chr3.1:87889402-87889421 None:intergenic 30.0%
ATATGAAACGAATTATGGGA+CGG - chr3.1:87888649-87888668 None:intergenic 30.0%
ATGTACTAGTAACCAATCTT+AGG + chr3.1:87890774-87890793 MS.gene014645:intron 30.0%
ATTAAGACATGTACATCATC+AGG - chr3.1:87891590-87891609 None:intergenic 30.0%
ATTCTTCATTTGTGTTTGCT+TGG + chr3.1:87890729-87890748 MS.gene014645:intron 30.0%
ATTGAAAATGTATACCTCAG+TGG - chr3.1:87889962-87889981 None:intergenic 30.0%
ATTTGGATCTCATATGGAAA+AGG + chr3.1:87888045-87888064 MS.gene014645:intron 30.0%
CATGTCTTAGCAATTAATAG+AGG - chr3.1:87891812-87891831 None:intergenic 30.0%
CTAAATGCTAAGAATCATAC+GGG + chr3.1:87891719-87891738 MS.gene014645:CDS 30.0%
CTCTATTAATTGCTAAGACA+TGG + chr3.1:87891810-87891829 MS.gene014645:intron 30.0%
CTCTCTGTATAAGTTTATCA+AGG - chr3.1:87889532-87889551 None:intergenic 30.0%
CTTCTTATGTTCATACAATG+AGG + chr3.1:87891203-87891222 MS.gene014645:intron 30.0%
GAAGATAAATACAACACAAG+AGG - chr3.1:87890822-87890841 None:intergenic 30.0%
GAATAAAAGTTTAACAGGGA+CGG + chr3.1:87889551-87889570 MS.gene014645:CDS 30.0%
GCAATTAATAGAGGATATAG+AGG - chr3.1:87891803-87891822 None:intergenic 30.0%
GTGATGAATGATAAAGAGAT+GGG - chr3.1:87887514-87887533 None:intergenic 30.0%
TAAACTTATACTTGCTTGCT+AGG + chr3.1:87887814-87887833 MS.gene014645:intron 30.0%
TAAACTTCTTATTACATCGG+GGG - chr3.1:87890846-87890865 None:intergenic 30.0%
TATTAATTGCTAAGACATGG+TGG + chr3.1:87891813-87891832 MS.gene014645:intron 30.0%
TATTAGGAGAAAATCAAGTC+AGG + chr3.1:87888571-87888590 MS.gene014645:CDS 30.0%
TGATCTATTCCTTAGATTAC+CGG - chr3.1:87887583-87887602 None:intergenic 30.0%
TGATGGAGATCATAATATTC+TGG + chr3.1:87888145-87888164 MS.gene014645:CDS 30.0%
TGGTAAATATCTGTCAATCT+TGG - chr3.1:87891434-87891453 None:intergenic 30.0%
TGTACTAGTAACCAATCTTA+GGG + chr3.1:87890775-87890794 MS.gene014645:intron 30.0%
TGTGTGACATTAAAACAATC+TGG - chr3.1:87888930-87888949 None:intergenic 30.0%
TTACCAAAAACTTCTGTAAC+TGG + chr3.1:87889069-87889088 MS.gene014645:intron 30.0%
TTACTGTCAATTGGACATAT+AGG + chr3.1:87890386-87890405 MS.gene014645:intron 30.0%
TTATGTACTTCTTAAGAGGA+AGG + chr3.1:87889733-87889752 MS.gene014645:CDS 30.0%
TTGGAGAAGACTGTATAATT+TGG - chr3.1:87887990-87888009 None:intergenic 30.0%
TTTGATCAAGATCCAGATTA+TGG + chr3.1:87890282-87890301 MS.gene014645:CDS 30.0%
! AAATTTAGGGCTTGACTATA+TGG + chr3.1:87889845-87889864 MS.gene014645:intron 30.0%
! AGCTTGATAACATGGAATTA+GGG + chr3.1:87887747-87887766 MS.gene014645:intron 30.0%
! ATAACTTCCTAATGGGTATT+AGG + chr3.1:87888555-87888574 MS.gene014645:CDS 30.0%
! ATGAATGTAGCTTGATAACA+TGG + chr3.1:87887739-87887758 MS.gene014645:intron 30.0%
! ATTTTCTCCTAATACCCATT+AGG - chr3.1:87888565-87888584 None:intergenic 30.0%
! CATGTCTTAATTTCCTTTTC+AGG + chr3.1:87891599-87891618 MS.gene014645:intron 30.0%
! CTTGTCATATTTTTCCTCTT+TGG - chr3.1:87889914-87889933 None:intergenic 30.0%
! GATCATTGCCTATTTTCTTA+TGG + chr3.1:87889095-87889114 MS.gene014645:intron 30.0%
! TAAAACAATCTGGTTTCATG+TGG - chr3.1:87888920-87888939 None:intergenic 30.0%
! TAGCTTGATAACATGGAATT+AGG + chr3.1:87887746-87887765 MS.gene014645:intron 30.0%
! TGAGATCAACATTTTGTATC+GGG + chr3.1:87887614-87887633 MS.gene014645:intron 30.0%
! TGCTTATAATGGAGTTTAGA+GGG + chr3.1:87889297-87889316 MS.gene014645:intron 30.0%
! TGTATAATTTGTGAATGCTC+CGG + chr3.1:87887561-87887580 MS.gene014645:intron 30.0%
! TTCCTCTTAAGAAGTACATA+AGG - chr3.1:87889734-87889753 None:intergenic 30.0%
! TTGCTTATAATGGAGTTTAG+AGG + chr3.1:87889296-87889315 MS.gene014645:intron 30.0%
! TTTAAGATTGGTCGCAAAAT+CGG + chr3.1:87887302-87887321 MS.gene014645:CDS 30.0%
!! AAGAAGCATTTGGGTATATT+TGG + chr3.1:87888028-87888047 MS.gene014645:intron 30.0%
!! AATAGTCATTGATTCAAGTG+AGG - chr3.1:87891088-87891107 None:intergenic 30.0%
!! ACATTTTCTGCAGTTGATTT+GGG - chr3.1:87891985-87892004 None:intergenic 30.0%
!! CTTTTAAGGATTGCTATTAC+TGG + chr3.1:87890097-87890116 MS.gene014645:intron 30.0%
!!! AGTTTTGTTACAGTAACTTG+AGG - chr3.1:87891638-87891657 None:intergenic 30.0%
AAAAACTAGATTGAGGGTCA+GGG - chr3.1:87890002-87890021 None:intergenic 35.0%
AAAATGTCTCTAAGCCTGAA+AGG + chr3.1:87891998-87892017 MS.gene014645:CDS 35.0%
AAGGAGACAAAAGCAATCAT+CGG + chr3.1:87890949-87890968 MS.gene014645:CDS 35.0%
AATAGAGTACATGCATTCCA+AGG + chr3.1:87888505-87888524 MS.gene014645:CDS 35.0%
AATCCAGCTGCTTGAAATAT+GGG - chr3.1:87892067-87892086 None:intergenic 35.0%
ACATACTGCATACAGTACAT+AGG + chr3.1:87890569-87890588 MS.gene014645:intron 35.0%
AGTCTTTCTTAGTTGAACAG+CGG - chr3.1:87891525-87891544 None:intergenic 35.0%
AGTTTAAACCCTGATCATCA+AGG + chr3.1:87887692-87887711 MS.gene014645:intron 35.0%
ATACCCATTAGGAAGTTATC+TGG - chr3.1:87888554-87888573 None:intergenic 35.0%
ATAGAGTACATGCATTCCAA+GGG + chr3.1:87888506-87888525 MS.gene014645:CDS 35.0%
ATAGTTCCAGGTATTCATGT+AGG - chr3.1:87890057-87890076 None:intergenic 35.0%
ATCGAAAAGTTACCTCTTGT+AGG + chr3.1:87888395-87888414 MS.gene014645:intron 35.0%
ATTGTTTCGTCAATAGTTCC+AGG - chr3.1:87890069-87890088 None:intergenic 35.0%
CAAACCAGATAACTTCCTAA+TGG + chr3.1:87888547-87888566 MS.gene014645:CDS 35.0%
CAAGCAAGCATATTCCTTAT+AGG + chr3.1:87888756-87888775 MS.gene014645:CDS 35.0%
CAAGGATGCCATAAGAAAAT+AGG - chr3.1:87889106-87889125 None:intergenic 35.0%
CAATAGACTCCAAATCATCA+CGG - chr3.1:87889704-87889723 None:intergenic 35.0%
CGTGATGAATGATAAAGAGA+TGG - chr3.1:87887515-87887534 None:intergenic 35.0%
CTCAACAACTATTGTGTACA+AGG + chr3.1:87887882-87887901 MS.gene014645:intron 35.0%
CTCAACTGATTAGGGTTAAA+AGG + chr3.1:87887655-87887674 MS.gene014645:intron 35.0%
CTCATTGCAAAACGGAAAAA+AGG + chr3.1:87891354-87891373 MS.gene014645:intron 35.0%
CTTCAATGATAAAACCTCTC+AGG - chr3.1:87890151-87890170 None:intergenic 35.0%
GAACGAATTCTGTTCAATTG+TGG + chr3.1:87891235-87891254 MS.gene014645:intron 35.0%
GGAGATGACCATAATAAGTT+TGG + chr3.1:87889260-87889279 MS.gene014645:intron 35.0%
GGGTATATTTGGATCTCATA+TGG + chr3.1:87888039-87888058 MS.gene014645:intron 35.0%
GTCCTTATGTACTTCTTAAG+AGG + chr3.1:87889729-87889748 MS.gene014645:CDS 35.0%
GTCTCTATGTAAAAATCCCT+TGG - chr3.1:87888525-87888544 None:intergenic 35.0%
GTGAGGAAGAGAATAAAATC+AGG - chr3.1:87891071-87891090 None:intergenic 35.0%
GTGCTTAAGTAGAGATATTC+TGG - chr3.1:87890551-87890570 None:intergenic 35.0%
TAAAAACTAGATTGAGGGTC+AGG - chr3.1:87890003-87890022 None:intergenic 35.0%
TACAAGCTTAGCTGTAAAGA+AGG - chr3.1:87889632-87889651 None:intergenic 35.0%
TATGAAACGAATTATGGGAC+GGG - chr3.1:87888648-87888667 None:intergenic 35.0%
TCATGTAGGTCAAAGTATGA+GGG - chr3.1:87890043-87890062 None:intergenic 35.0%
TGATGATCAGGGTTTAAACT+CGG - chr3.1:87887692-87887711 None:intergenic 35.0%
TGCAATACTCACTTAGGAAT+CGG + chr3.1:87889588-87889607 MS.gene014645:CDS 35.0%
TGCATTTACTGGAATGCATA+TGG + chr3.1:87891016-87891035 MS.gene014645:intron 35.0%
TGGATCTTGATCAAATGTCA+AGG - chr3.1:87890277-87890296 None:intergenic 35.0%
TTAGGGTTAAAAGGAGTTTG+AGG + chr3.1:87887664-87887683 MS.gene014645:intron 35.0%
TTATAACTGCACAGTAGTAC+TGG - chr3.1:87889136-87889155 None:intergenic 35.0%
TTCATGTAGGTCAAAGTATG+AGG - chr3.1:87890044-87890063 None:intergenic 35.0%
TTCTTTAGATTGGATGGCTT+AGG - chr3.1:87891698-87891717 None:intergenic 35.0%
TTTGGCTGAATTTAATGAGC+AGG + chr3.1:87890866-87890885 MS.gene014645:intron 35.0%
! ACACCAGTTACAGAAGTTTT+TGG - chr3.1:87889075-87889094 None:intergenic 35.0%
! ACATTTTGTATCGGGTTTGA+TGG + chr3.1:87887622-87887641 MS.gene014645:intron 35.0%
! AGGAATATGCTTGCTTGTTT+TGG - chr3.1:87888753-87888772 None:intergenic 35.0%
! ATTCTGGTTATGGATCTTCT+GGG + chr3.1:87888161-87888180 MS.gene014645:CDS 35.0%
! CATTTTGTATCGGGTTTGAT+GGG + chr3.1:87887623-87887642 MS.gene014645:intron 35.0%
! CTTATAATGGAGTTTAGAGG+GGG + chr3.1:87889299-87889318 MS.gene014645:intron 35.0%
! CTTCTGAGAACAAGGAATAT+GGG - chr3.1:87890202-87890221 None:intergenic 35.0%
! GACATTTTCTGCAGTTGATT+TGG - chr3.1:87891986-87892005 None:intergenic 35.0%
! GCTTATAATGGAGTTTAGAG+GGG + chr3.1:87889298-87889317 MS.gene014645:intron 35.0%
! GTCAGGGGTTAATCATTTTA+TGG - chr3.1:87889986-87890005 None:intergenic 35.0%
! TATTCTGGTTATGGATCTTC+TGG + chr3.1:87888160-87888179 MS.gene014645:CDS 35.0%
! TCGGACTAGGAAAAAGATAT+CGG + chr3.1:87888723-87888742 MS.gene014645:CDS 35.0%
! TGGAATTAGGGATGTGTTTT+TGG + chr3.1:87887759-87887778 MS.gene014645:intron 35.0%
! TTCTGATTCGTCTTACACTT+CGG + chr3.1:87888084-87888103 MS.gene014645:intron 35.0%
!! CGCTTTAAGAATCCATAATC+TGG - chr3.1:87890297-87890316 None:intergenic 35.0%
!! GGAATATGCTTGCTTGTTTT+GGG - chr3.1:87888752-87888771 None:intergenic 35.0%
!! TTTTGCATTTTAGCCTTCCT+TGG + chr3.1:87889869-87889888 MS.gene014645:intron 35.0%
!!! GAATATGCTTGCTTGTTTTG+GGG - chr3.1:87888751-87888770 None:intergenic 35.0%
!!! TGTTTTAGCCTGTTGAATGT+AGG + chr3.1:87890455-87890474 MS.gene014645:intron 35.0%
AAAACTAGATTGAGGGTCAG+GGG - chr3.1:87890001-87890020 None:intergenic 40.0%
AAAATCGGAAGCGGTTCATT+TGG + chr3.1:87887317-87887336 MS.gene014645:intron 40.0%
AAAGTAAGACGCAAACTCCA+CGG - chr3.1:87890241-87890260 None:intergenic 40.0%
AATCAGAACTCAGAAGAGTC+CGG - chr3.1:87889440-87889459 None:intergenic 40.0%
AGAAGAAATCCAATGGCAGT+CGG - chr3.1:87891772-87891791 None:intergenic 40.0%
AGCTAGTACGAATCAGCATT+AGG - chr3.1:87887908-87887927 None:intergenic 40.0%
ATGAATCAGTGGTTACCATC+TGG - chr3.1:87888259-87888278 None:intergenic 40.0%
ATTCCAACTATGAGATGGTG+CGG + chr3.1:87888119-87888138 MS.gene014645:CDS 40.0%
CAAACCTAGGTCGTGTATTT+GGG + chr3.1:87892034-87892053 MS.gene014645:CDS 40.0%
CAATGATAAAACCTCTCAGG+AGG - chr3.1:87890148-87890167 None:intergenic 40.0%
CACATTTGGACGATCAAGAT+TGG - chr3.1:87891666-87891685 None:intergenic 40.0%
CTTTGACCTACATGAATACC+TGG + chr3.1:87890048-87890067 MS.gene014645:intron 40.0%
GAAGAAATTCGCCGTAAAGA+AGG - chr3.1:87892090-87892109 None:intergenic 40.0%
GAAGTTATCAACTTCCACTG+AGG + chr3.1:87889945-87889964 MS.gene014645:CDS 40.0%
GAATCCAGCTGCTTGAAATA+TGG - chr3.1:87892068-87892087 None:intergenic 40.0%
GCAAGTTGCAATACTCACTT+AGG + chr3.1:87889582-87889601 MS.gene014645:CDS 40.0%
GCAATCCAGATATGAATCAG+TGG - chr3.1:87888270-87888289 None:intergenic 40.0%
GCATCCACAACTATTGTATG+AGG + chr3.1:87887964-87887983 MS.gene014645:CDS 40.0%
GTGGTATTCCAACTATGAGA+TGG + chr3.1:87888114-87888133 MS.gene014645:CDS 40.0%
GTGGTTGTGGAAAAACATAC+AGG + chr3.1:87891170-87891189 MS.gene014645:CDS 40.0%
TAATGCCTCCTACATTCAAC+AGG - chr3.1:87890466-87890485 None:intergenic 40.0%
TAATTTCTTCCGACTGCCAT+TGG + chr3.1:87891760-87891779 MS.gene014645:intron 40.0%
TACTCTATTCTCGAAAGCTG+TGG - chr3.1:87888494-87888513 None:intergenic 40.0%
TATTCCCAAATACACGACCT+AGG - chr3.1:87892041-87892060 None:intergenic 40.0%
TCAAACCTAGGTCGTGTATT+TGG + chr3.1:87892033-87892052 MS.gene014645:CDS 40.0%
TGTAGGAGAAGAAGAGAACA+AGG + chr3.1:87887942-87887961 MS.gene014645:intron 40.0%
TTCACTTGGAAGTTGGAACT+TGG + chr3.1:87891481-87891500 MS.gene014645:intron 40.0%
TTGGCCTCATACAATAGTTG+TGG - chr3.1:87887971-87887990 None:intergenic 40.0%
TTGGGTAGCTCAACTGATTA+GGG + chr3.1:87887647-87887666 MS.gene014645:intron 40.0%
TTGTTCTCAAGACCACATGT+AGG - chr3.1:87890613-87890632 None:intergenic 40.0%
TTTAGCCTGTTGAATGTAGG+AGG + chr3.1:87890458-87890477 MS.gene014645:intron 40.0%
TTTGATGTTAGCAGACCAGA+TGG + chr3.1:87888241-87888260 MS.gene014645:CDS 40.0%
TTTGGGTAGCTCAACTGATT+AGG + chr3.1:87887646-87887665 MS.gene014645:intron 40.0%
! AGTAGCTACCTTGATGATCA+GGG - chr3.1:87887703-87887722 None:intergenic 40.0%
! ATGGTCTAGCTTGCATTTAC+TGG + chr3.1:87891005-87891024 MS.gene014645:intron 40.0%
! CGGACTAGGAAAAAGATATC+GGG + chr3.1:87888724-87888743 MS.gene014645:CDS 40.0%
! CGTCTTACACTTCGGATTTT+AGG + chr3.1:87888092-87888111 MS.gene014645:intron 40.0%
! CGTGATGATTTGGAGTCTAT+TGG + chr3.1:87889702-87889721 MS.gene014645:CDS 40.0%
! CTTACACTTCGGATTTTAGG+TGG + chr3.1:87888095-87888114 MS.gene014645:intron 40.0%
! GCTTCTGAGAACAAGGAATA+TGG - chr3.1:87890203-87890222 None:intergenic 40.0%
! GTATGTTTTTCCACAACCAC+TGG - chr3.1:87891170-87891189 None:intergenic 40.0%
! GTTGCGTCTGCTGATATTTT+AGG - chr3.1:87890925-87890944 None:intergenic 40.0%
! GTTGGCGGAAAGTTTAAGAT+TGG + chr3.1:87887290-87887309 MS.gene014645:CDS 40.0%
! TAGGGTTTCAGAGTTGTTTC+TGG + chr3.1:87890793-87890812 MS.gene014645:intron 40.0%
! TAGTAGCTACCTTGATGATC+AGG - chr3.1:87887704-87887723 None:intergenic 40.0%
! TTTGAGATGAGACCTACATG+TGG + chr3.1:87890598-87890617 MS.gene014645:intron 40.0%
!! AGTAGTACTGGTACACATCA+AGG - chr3.1:87889124-87889143 None:intergenic 40.0%
!! ATAGGAGCATTTCCTACAAG+AGG - chr3.1:87888410-87888429 None:intergenic 40.0%
!! CAACTCTGAAACCCTAAGAT+TGG - chr3.1:87890789-87890808 None:intergenic 40.0%
!! CGTCTGCTGATATTTTAGGA+TGG - chr3.1:87890921-87890940 None:intergenic 40.0%
!! GGTAACCACTGATTCATATC+TGG + chr3.1:87888262-87888281 MS.gene014645:intron 40.0%
!!! AGAGGGGGTATTTTGTGAAA+TGG + chr3.1:87889314-87889333 MS.gene014645:intron 40.0%
AACTCAGAAGAGTCCGGAAA+AGG - chr3.1:87889434-87889453 None:intergenic 45.0%
AAGTAAGACGCAAACTCCAC+GGG - chr3.1:87890240-87890259 None:intergenic 45.0%
ACTAGGAACAGCACTAGGTA+CGG - chr3.1:87891126-87891145 None:intergenic 45.0%
ACTCCCATATTTCAAGCAGC+TGG + chr3.1:87892061-87892080 MS.gene014645:CDS 45.0%
AGGAAATGCTCCTATCCACA+GGG + chr3.1:87888415-87888434 MS.gene014645:intron 45.0%
AGTATGAGGGCGAGAAGAAA+AGG - chr3.1:87890030-87890049 None:intergenic 45.0%
ATAAAACCTCTCAGGAGGAG+GGG - chr3.1:87890143-87890162 None:intergenic 45.0%
ATTGGTCGCAAAATCGGAAG+CGG + chr3.1:87887308-87887327 MS.gene014645:CDS 45.0%
CAATGATCCGTCCACTTCAT+CGG + chr3.1:87891954-87891973 MS.gene014645:CDS 45.0%
CATTGAAAGTCCCTGTGGAT+AGG - chr3.1:87888428-87888447 None:intergenic 45.0%
GATAAAACCTCTCAGGAGGA+GGG - chr3.1:87890144-87890163 None:intergenic 45.0%
GCAGCTGGATTCCTTCTTTA+CGG + chr3.1:87892076-87892095 MS.gene014645:CDS 45.0%
GCTTTCATTGAAAGTCCCTG+TGG - chr3.1:87888433-87888452 None:intergenic 45.0%
GTGAATGCTCCGGTAATCTA+AGG + chr3.1:87887571-87887590 MS.gene014645:intron 45.0%
TAGGAAATGCTCCTATCCAC+AGG + chr3.1:87888414-87888433 MS.gene014645:intron 45.0%
TCTGAAAGCTGTCACCAAAG+AGG + chr3.1:87889897-87889916 MS.gene014645:CDS 45.0%
TGATAAAACCTCTCAGGAGG+AGG - chr3.1:87890145-87890164 None:intergenic 45.0%
! ACCTAGGTTTGAAGTTCCTG+TGG - chr3.1:87892025-87892044 None:intergenic 45.0%
! AGGACCTTTTTGTCTTCTGC+GGG + chr3.1:87888195-87888214 MS.gene014645:CDS 45.0%
! CCTAGGTTTGAAGTTCCTGT+GGG - chr3.1:87892024-87892043 None:intergenic 45.0%
! GAGGACCTTTTTGTCTTCTG+CGG + chr3.1:87888194-87888213 MS.gene014645:CDS 45.0%
! GATGGACTCAAAGTGTCTAC+TGG + chr3.1:87889177-87889196 MS.gene014645:intron 45.0%
! GCTTTTTGCAGCCTCTGATA+TGG + chr3.1:87887436-87887455 MS.gene014645:intron 45.0%
! TCGCAAAGCTTCTGAGAACA+AGG - chr3.1:87890210-87890229 None:intergenic 45.0%
!! CATTTTAGCCTTCCTTGGCA+GGG + chr3.1:87889874-87889893 MS.gene014645:intron 45.0%
!! GTATCGGGTTTGATGGGTTT+GGG + chr3.1:87887629-87887648 MS.gene014645:intron 45.0%
!! TGTATCGGGTTTGATGGGTT+TGG + chr3.1:87887628-87887647 MS.gene014645:intron 45.0%
ACAGCACTAGGAACAGCACT+AGG - chr3.1:87891131-87891150 None:intergenic 50.0%
ATCAGCAGACGCAACAGACA+AGG + chr3.1:87890930-87890949 MS.gene014645:CDS 50.0%
CAGTCTACAACCAGTGGTTG+TGG + chr3.1:87891157-87891176 MS.gene014645:CDS 50.0%
CCCACAGGAACTTCAAACCT+AGG + chr3.1:87892021-87892040 MS.gene014645:CDS 50.0%
CGTGAGTTGTTCACTCGTGA+AGG + chr3.1:87890324-87890343 MS.gene014645:CDS 50.0%
CTCTGATATGGACACCTCTG+AGG + chr3.1:87887448-87887467 MS.gene014645:CDS 50.0%
GCAAAGTCGCCGTGATGATT+TGG + chr3.1:87889692-87889711 MS.gene014645:CDS 50.0%
GCTTTGCGAATCATATCCCG+TGG + chr3.1:87890221-87890240 MS.gene014645:CDS 50.0%
GTACCGCACCATCTCATAGT+TGG - chr3.1:87888125-87888144 None:intergenic 50.0%
TGAGGTCGTTGCCGTCAAAA+TGG + chr3.1:87887466-87887485 MS.gene014645:CDS 50.0%
TGCTCCCGCAGAAGACAAAA+AGG - chr3.1:87888202-87888221 None:intergenic 50.0%
TTAGGCTGCACACGCACATT+TGG - chr3.1:87891680-87891699 None:intergenic 50.0%
TTTGGGCAAAGCCGATGAAG+TGG - chr3.1:87891968-87891987 None:intergenic 50.0%
! ACCACTGGTTGTAGACTGCT+AGG - chr3.1:87891155-87891174 None:intergenic 50.0%
! ATGAGATGGTGCGGTACTGA+TGG + chr3.1:87888128-87888147 MS.gene014645:CDS 50.0%
!! CTCAGAGGTGTCCATATCAG+AGG - chr3.1:87887450-87887469 None:intergenic 50.0%
!! GCATTTTAGCCTTCCTTGGC+AGG + chr3.1:87889873-87889892 MS.gene014645:intron 50.0%
ACAGCTTTCAGACCCTGCCA+AGG - chr3.1:87889889-87889908 None:intergenic 55.0%
AGACTGCTAGGCACAGCACT+AGG - chr3.1:87891143-87891162 None:intergenic 55.0%
CTTTCAGACCCTGCCAAGGA+AGG - chr3.1:87889885-87889904 None:intergenic 55.0%
GAAGTTCCTGTGGGCCTTTC+AGG - chr3.1:87892015-87892034 None:intergenic 55.0%
GCACTAGGTACGGCATCTGA+AGG - chr3.1:87891116-87891135 None:intergenic 55.0%
GCCTAGCAGTCTACAACCAG+TGG + chr3.1:87891151-87891170 MS.gene014645:CDS 55.0%
GGCAAAGCCGATGAAGTGGA+CGG - chr3.1:87891964-87891983 None:intergenic 55.0%
TCTAAGCCTGAAAGGCCCAC+AGG + chr3.1:87892006-87892025 MS.gene014645:CDS 55.0%
TTTGACGGCAACGACCTCAG+AGG - chr3.1:87887465-87887484 None:intergenic 55.0%
!! GGATCTTCTGGGACGTAGTC+TGG + chr3.1:87888172-87888191 MS.gene014645:CDS 55.0%
!! TCTTCTGGGACGTAGTCTGG+AGG + chr3.1:87888175-87888194 MS.gene014645:CDS 55.0%
AGTTAGCCCCTCCTCCTGAG+AGG + chr3.1:87890134-87890153 MS.gene014645:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 87887278 87892119 87887278 ID=MS.gene014645
chr3.1 mRNA 87887278 87892119 87887278 ID=MS.gene014645.t1;Parent=MS.gene014645
chr3.1 exon 87887278 87887329 87887278 ID=MS.gene014645.t1.exon1;Parent=MS.gene014645.t1
chr3.1 CDS 87887278 87887329 87887278 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87887447 87887487 87887447 ID=MS.gene014645.t1.exon2;Parent=MS.gene014645.t1
chr3.1 CDS 87887447 87887487 87887447 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87887947 87888016 87887947 ID=MS.gene014645.t1.exon3;Parent=MS.gene014645.t1
chr3.1 CDS 87887947 87888016 87887947 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87888114 87888262 87888114 ID=MS.gene014645.t1.exon4;Parent=MS.gene014645.t1
chr3.1 CDS 87888114 87888262 87888114 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87888497 87888592 87888497 ID=MS.gene014645.t1.exon5;Parent=MS.gene014645.t1
chr3.1 CDS 87888497 87888592 87888497 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87888707 87888777 87888707 ID=MS.gene014645.t1.exon6;Parent=MS.gene014645.t1
chr3.1 CDS 87888707 87888777 87888707 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87889548 87889609 87889548 ID=MS.gene014645.t1.exon7;Parent=MS.gene014645.t1
chr3.1 CDS 87889548 87889609 87889548 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87889691 87889754 87889691 ID=MS.gene014645.t1.exon8;Parent=MS.gene014645.t1
chr3.1 CDS 87889691 87889754 87889691 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87889882 87889966 87889882 ID=MS.gene014645.t1.exon9;Parent=MS.gene014645.t1
chr3.1 CDS 87889882 87889966 87889882 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87890219 87890345 87890219 ID=MS.gene014645.t1.exon10;Parent=MS.gene014645.t1
chr3.1 CDS 87890219 87890345 87890219 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87890888 87890970 87890888 ID=MS.gene014645.t1.exon11;Parent=MS.gene014645.t1
chr3.1 CDS 87890888 87890970 87890888 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87891113 87891191 87891113 ID=MS.gene014645.t1.exon12;Parent=MS.gene014645.t1
chr3.1 CDS 87891113 87891191 87891113 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87891621 87891748 87891621 ID=MS.gene014645.t1.exon13;Parent=MS.gene014645.t1
chr3.1 CDS 87891621 87891748 87891621 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
chr3.1 exon 87891946 87892119 87891946 ID=MS.gene014645.t1.exon14;Parent=MS.gene014645.t1
chr3.1 CDS 87891946 87892119 87891946 ID=cds.MS.gene014645.t1;Parent=MS.gene014645.t1
Gene Sequence

>MS.gene014645

ATGGAGTGGGTCGTTGGCGGAAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATAGGTAATTTATTATTATTCATTTCTATTTCATTTATTTGTATTGTTCTATTCAACATTCATATGCGGATGCTGATTATCTTGTTGCTTTTTGCAGCCTCTGATATGGACACCTCTGAGGTCGTTGCCGTCAAAATGGTTTGTTTCTTTCTCTTTCATTTCCCATCTCTTTATCATTCATCACGTTAATTTTGCTTAAAGTTTTTTTTTATGTATAATTTGTGAATGCTCCGGTAATCTAAGGAATAGATCATTTTATCCTAATGAGATCAACATTTTGTATCGGGTTTGATGGGTTTGGGTAGCTCAACTGATTAGGGTTAAAAGGAGTTTGAGGATCCGAGTTTAAACCCTGATCATCAAGGTAGCTACTAATTATTAAGAAATGAATGAATGTAGCTTGATAACATGGAATTAGGGATGTGTTTTTGGATATGCATAAAGTGAATTAATCACTACAAGTATAAACTTATACTTGCTTGCTAGGTGTAAGCTATGACCTTTATTTTTTACACACTTTCATATTCAATTGCTCAACAACTATTGTGTACAAGGCCTAATGCTGATTCGTACTAGCTACATTTCTTTATTTTGTAGGAGAAGAAGAGAACAAGGCATCCACAACTATTGTATGAGGCCAAATTATACAGTCTTCTCCAAGGAGAAAGTAAGTTATAAAAGAAGCATTTGGGTATATTTGGATCTCATATGGAAAAGGCTATGTTACTTGTTTTTTCTGATTCGTCTTACACTTCGGATTTTAGGTGGTATTCCAACTATGAGATGGTGCGGTACTGATGGAGATCATAATATTCTGGTTATGGATCTTCTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTACTTTAAAAACAGTTTTGATGTTAGCAGACCAGATGGTAACCACTGATTCATATCTGGATTGCTTGCTTTATTTTTCAATTGGCATCATTAGTTCCTTGATGATATTAAATATGGCTTTTGGAAATAACTATCATGTTTGTTGCCTATCAATATAGTAGCAGTTTTATATCGAAAAGTTACCTCTTGTAGGAAATGCTCCTATCCACAGGGACTTTCAATGAAAGCACATTAATGTCAGTTTATTTCTGCTTTATTGTACTTGACCACAGCTTTCGAGAATAGAGTACATGCATTCCAAGGGATTTTTACATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTAAAATCATCTAAATTCATTATCTTCACTGGCTAATTATGTTGATAATTTTCCCGTCCCATAATTCGTTTCATATGTCTTACATTTTCTTTCTGCAATTTGTTACATTTATAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATATCGGGACCCCAAAACAAGCAAGCATATTCCTTATAGGTATATTTTGTTGTTTAATTTTAATTATATTTCTAATCTTTTATTATGGATCATGTTTTTACATGTTATAAGGTTTTCTTGTGTCCTAAAAATACTTGATTTGTTTACTTTTCTATTTACAAAAGTTCTAGAGGTTTGACCACATGAAACCAGATTGTTTTAATGTCACACATGAAGTAAAAAAAAAAAAAAATATGAGAAGATAAATTGAAAGTTGATATTAATTATTCTTCATTGGATAACAGTTAATAAAGGTATTCAATTAAGTTTTCTATATTTCAAATCTTATAATTACCAAAAACTTCTGTAACTGGTGTGATCATTGCCTATTTTCTTATGGCATCCTTGATGTGTACCAGTACTACTGTGCAGTTATAAGCAAAAAAAATGTCTAAATTTGATGGACTCAAAGTGTCTACTGGTGTGATCATTTAATGTTACTATTACAAAAACACCCTTACGTTAATACTTTAATGTTGTGAGGAGATGACCATAATAAGTTTGGAAGTAGGTATTTTTTGCTTATAATGGAGTTTAGAGGGGGTATTTTGTGAAATGGTCTCTCATTTTTTTTTTTTTTGTAAATTAAATGTACATTGCTGTTTATCAATAGAGAGTCTTCCAACTTGTAATCTGTGTAATCTCAAATAATTCCTTTTCCGGACTCTTCTGAGTTCTGATTGTTTCATTCTCACTGCTACTTGTGATTTGCTAGTTTAACTAGTCAAGTTAATGGTCCCTAATGTTTTGACCTTGATAAACTTATACAGAGAGAATAAAAGTTTAACAGGGACGGCACGATATGCAAGTTGCAATACTCACTTAGGAATCGGTACGTAGAAATAACTTCTCCTTCTTTACAGCTAAGCTTGTAACCCACAAATTTCATTCTATTTTGGTTTAATTTATTCAGAGCAAAGTCGCCGTGATGATTTGGAGTCTATTGGCTATGTCCTTATGTACTTCTTAAGAGGAAGGTATGTTTCTTCCCATTCATTGTAATTTTCTTACATTTTGAATTTTAAAAAATGGTGCATATGAGTATCAATTGCACATTCTTTTTAGGTAAATTTAGGGCTTGACTATATGGTTTTTGCATTTTAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGTGAGAAGAAGTTATCAACTTCCACTGAGGTATACATTTTCAATTCCATAAAATGATTAACCCCTGACCCTCAATCTAGTTTTTAATTTCCTTTTCTTCTCGCCCTCATACTTTGACCTACATGAATACCTGGAACTATTGACGAAACAATATTAAGAGCTTTTAAGGATTGCTATTACTGGATTTATCAAATTTTAGTTAGCCCCTCCTCCTGAGAGGTTTTATCATTGAAGTGTTTTTGTTACTCAGAAGTTTAATGAACCCATATTCCTTGTTCTCAGAAGCTTTGCGAATCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGAGTTGTTCACTCGTGAAGGTATTGACTGCTTTTTTATCTTATACTTGATTTTAAGTAATTACTGTCAATTGGACATATAGGATATATGACATTGTTTGATGATATGATAATTTGCTTATTAGTTGGTTGTTTTAGCCTGTTGAATGTAGGAGGCATTATAAATGACTTCCACTAAGTATTTAACCTTTCTTCTTTCTCCTTTAGTTATGCAAATTTTGTGCCAGAATATCTCTACTTAAGCACATACTGCATACAGTACATAGGTATACGTTTGAGATGAGACCTACATGTGGTCTTGAGAACAAAGCCAACTATCTAACATTTTATGATTTTATTGTTTTTCATCCATTACTCTATATCCAAAAATTCATGTTTTGGAAATTTTATGAATTAGTTCATTAATTCTTCATTTGTGTTTGCTTGGAAATAAATGATTTAGCTGTATCATGTACTAGTAACCAATCTTAGGGTTTCAGAGTTGTTTCTGGTAGCCTCTTGTGTTGTATTTATCTTCTCCCCCGATGTAATAAGAAGTTTATTTGGCTGAATTTAATGAGCAGGATATGACTATGACAATTTATTCGACTGGACCATCCTAAAATATCAGCAGACGCAACAGACAAGGAGACAAAAGCAATCATCGGTTAGTATTTTATTTTGAACCTTTAAACATTTTTATGGTCTAGCTTGCATTTACTGGAATGCATATGGATTGTCTGATAGCCCGATTATTAAACTTTCCTGATTTTATTCTCTTCCTCACTTGAATCAATGACTATTTGCAGCCTTCAGATGCCGTACCTAGTGCTGTTCCTAGTGCTGTGCCTAGCAGTCTACAACCAGTGGTTGTGGAAAAACATACAGGTAACTTCAGTCTTCTTATGTTCATACAATGAGGTTAAAACTTGAACGAATTCTGTTCAATTGTGGGAGATTTTTCCTAGATAATGTATATTGAAGTGATTTGCTAGATGAGATTTTTATTTTCCAGTAGAATGAGTTAGAATTTAAAGTTACATTTTAATGCTCATTGCAAAACGGAAAAAAGGCAATAGTTTCTATCTTAATATAAGCTTCTGATGTACAAAGAATTAAGATAGTTGCCAAGATTGACAGATATTTACCAACAAATTCCTTGTTATTATTATTATTTTTCACTTGGAAGTTGGAACTTGGAAGTTTTGCTTTGCTGTACCGCTGTTCAACTAAGAAAGACTAAGTTTGCAGTATAGTTGATTAATGCTGTCTACAGATTACATCCTGATGATGTACATGTCTTAATTTCCTTTTCAGGAATCAATAATTCACCTCAAGTTACTGTAACAAAACTGCTAACCAATCTTGATCGTCCAAATGTGCGTGTGCAGCCTAAGCCATCCAATCTAAAGAATCTAAATGCTAAGAATCATACGGGAAAACATGTAAGTCACAGTAATTTCTTCCGACTGCCATTGGATTTCTTCTTAATTTTACCTCTATATCCTCTATTAATTGCTAAGACATGGTGGCGTCACTTCTGTCGTCATGTTTGTGCTGTTAGTTCAATCACAAAGATATTTTGTTTTGATTTTTTTTACTTGGCTGAAGAAATTCAACTGATTGAGATAAATTTGTGCAGAATGTGAACAATGATCCGTCCACTTCATCGGCTTTGCCCAAATCAACTGCAGAAAATGTCTCTAAGCCTGAAAGGCCCACAGGAACTTCAAACCTAGGTCGTGTATTTGGGAATAACTCCCATATTTCAAGCAGCTGGATTCCTTCTTTACGGCGAATTTCTTCTACCAAATAG

Protein sequence

>MS.gene014645.t1

MEWVVGGKFKIGRKIGSASDMDTSEVVAVKMEKKRTRHPQLLYEAKLYSLLQGESGIPTMRWCGTDGDHNILVMDLLGRSLEDLFVFCGSKFTLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYRDPKTSKHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSTEKLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRELFTREGYDYDNLFDWTILKYQQTQQTRRQKQSSPSDAVPSAVPSAVPSSLQPVVVEKHTGINNSPQVTVTKLLTNLDRPNVRVQPKPSNLKNLNAKNHTGKHNVNNDPSTSSALPKSTAENVSKPERPTGTSNLGRVFGNNSHISSSWIPSLRRISSTK