AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01465

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01465.t1 MTR_7g074790 55.056 178 61 2 1 177 1 160 9.42e-61 199
MS.gene01465.t1 MTR_5g039760 51.955 179 60 3 1 177 1 155 2.50e-55 183
MS.gene01465.t1 MTR_0402s0040 28.603 451 289 13 10 440 26 463 3.18e-44 162
MS.gene01465.t1 MTR_7g061980 56.303 119 51 1 1 118 1 119 1.72e-42 147
MS.gene01465.t1 MTR_4g102720 35.119 168 76 1 7 174 4 138 1.06e-30 119
MS.gene01465.t1 MTR_2g099430 49.425 87 43 1 33 118 26 112 4.74e-20 85.9
MS.gene01465.t1 MTR_5g015480 38.525 122 72 2 10 128 56 177 1.36e-17 82.8
MS.gene01465.t1 MTR_4g069880 51.562 64 31 0 1 64 1 64 1.48e-17 77.4
MS.gene01465.t1 MTR_7g113010 37.302 126 64 2 10 133 457 569 3.05e-16 81.6
MS.gene01465.t1 MTR_1g019850 31.579 133 83 3 10 140 70 196 1.18e-15 76.6
MS.gene01465.t1 MTR_1g070355 28.571 168 110 3 14 174 78 242 3.30e-15 78.6
MS.gene01465.t1 MTR_1g083640 30.412 194 109 7 8 179 52 241 6.96e-15 75.5
MS.gene01465.t1 MTR_3g058090 36.585 123 54 3 285 407 5 103 7.74e-15 70.9
MS.gene01465.t1 MTR_0558s0020 30.412 194 109 7 8 179 37 226 8.62e-15 75.5
MS.gene01465.t1 MTR_1g057920 40.449 89 50 2 10 95 34 122 5.07e-14 68.9
MS.gene01465.t1 MTR_6g017200 39.024 82 49 1 10 90 58 139 1.21e-13 68.9
MS.gene01465.t1 MTR_1g013060 30.000 170 112 3 7 169 21 190 2.04e-13 70.1
MS.gene01465.t1 MTR_2g014100 29.381 194 111 6 8 179 45 234 2.21e-13 70.5
MS.gene01465.t1 MTR_5g045210 32.381 105 68 2 287 390 20 122 3.43e-13 68.9
MS.gene01465.t1 MTR_5g076070 29.375 160 109 3 13 168 56 215 8.91e-13 69.3
MS.gene01465.t1 MTR_4g117620 62.791 43 16 0 443 485 36 78 4.97e-12 62.0
MS.gene01465.t1 MTR_4g067290 36.893 103 62 3 9 109 55 156 5.23e-11 63.2
MS.gene01465.t1 MTR_4g067290 36.893 103 62 3 9 109 55 156 5.54e-11 63.2
MS.gene01465.t1 MTR_4g067290 36.893 103 62 3 9 109 75 176 9.81e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01465.t1 AT4G38180 32.203 177 115 3 6 177 69 245 1.37e-20 95.9
MS.gene01465.t1 AT4G38180 27.778 90 65 0 175 264 426 515 8.64e-12 68.2
MS.gene01465.t1 AT4G15090 31.609 174 93 7 249 411 557 715 8.64e-16 80.9
MS.gene01465.t1 AT4G15090 29.944 177 116 5 3 174 44 217 6.01e-13 72.0
MS.gene01465.t1 AT4G15090 31.609 174 93 7 249 411 557 715 8.64e-16 80.9
MS.gene01465.t1 AT4G15090 29.944 177 116 5 3 174 44 217 6.01e-13 72.0
MS.gene01465.t1 AT4G15090 31.609 174 93 7 249 411 557 715 8.64e-16 80.9
MS.gene01465.t1 AT4G15090 29.944 177 116 5 3 174 44 217 6.01e-13 72.0
MS.gene01465.t1 AT4G15090 31.609 174 93 7 249 411 557 715 8.64e-16 80.9
MS.gene01465.t1 AT4G15090 29.944 177 116 5 3 174 44 217 6.01e-13 72.0
MS.gene01465.t1 AT4G15090 31.609 174 93 7 249 411 557 715 8.64e-16 80.9
MS.gene01465.t1 AT4G15090 29.944 177 116 5 3 174 44 217 6.01e-13 72.0
MS.gene01465.t1 AT5G18960 42.718 103 44 4 9 109 42 131 2.73e-14 75.9
MS.gene01465.t1 AT5G18960 42.718 103 44 4 9 109 42 131 2.73e-14 75.9
MS.gene01465.t1 AT5G28530 28.402 169 115 4 8 170 53 221 2.62e-13 72.8
MS.gene01465.t1 AT5G28530 28.402 169 115 4 8 170 53 221 2.74e-13 72.8
MS.gene01465.t1 AT5G28530 28.402 169 115 4 8 170 53 221 3.40e-13 72.4
MS.gene01465.t1 AT5G28530 28.402 169 115 4 8 170 53 221 3.66e-13 72.4
MS.gene01465.t1 AT5G28530 28.402 169 115 4 8 170 53 221 3.66e-13 72.4
MS.gene01465.t1 AT3G06250 38.835 103 48 4 9 109 27 116 4.83e-12 68.9
MS.gene01465.t1 AT3G06250 38.835 103 48 4 9 109 27 116 4.83e-12 68.9
MS.gene01465.t1 AT3G06250 38.835 103 48 4 9 109 27 116 4.83e-12 68.9

Find 68 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGTATGCAACCGAATT+TGG 0.167798 2.2:-68501756 MS.gene01465:CDS
TAGATGAAGTTCATCAATTT+TGG 0.174539 2.2:-68502942 MS.gene01465:CDS
ATTGATTTGGCTAATGATTC+TGG 0.243805 2.2:-68502604 MS.gene01465:CDS
CAGTTTCAAGTAATGTTTCT+AGG 0.273436 2.2:-68501064 MS.gene01465:CDS
GTTGTCTCAAATTTCATAAA+AGG 0.301460 2.2:-68501218 MS.gene01465:CDS
TATGCTTATCTTCAAATTCA+TGG 0.305536 2.2:+68502704 None:intergenic
TGTAGAAAGTTTGAAACATT+TGG 0.316097 2.2:-68501416 MS.gene01465:CDS
TGGCTTCCAATCAACATTTA+CGG 0.338693 2.2:+68502990 None:intergenic
ATTTGTCGTGGCTCATAAAC+TGG 0.340582 2.2:+68500867 None:intergenic
GTGGCGTTGTGCAAGATGTT+AGG 0.347695 2.2:-68501295 MS.gene01465:CDS
GTCATGAATGCCGTTGTCTT+TGG 0.359484 2.2:+68501100 None:intergenic
TATGCTGCACGTACTGGCTT+TGG 0.360264 2.2:-68502913 MS.gene01465:CDS
CTTGCTTATGCTGCACGTAC+TGG 0.365082 2.2:-68502919 MS.gene01465:CDS
AATTGCATGATTTCCAAATT+CGG 0.367504 2.2:+68501743 None:intergenic
TAGCTTAACAGCGTATTTGA+TGG 0.383182 2.2:-68500829 MS.gene01465:intron
TGTCATGCGTAAGAAAATAA+TGG 0.385423 2.2:-68501138 MS.gene01465:CDS
TGACTACATGGTTGCTCTCT+AGG 0.386661 2.2:+68500939 None:intergenic
CTTCGTGTTCTAGACAACTT+TGG 0.403555 2.2:+68501251 None:intergenic
GCAAGCACATGAGATTGATT+TGG 0.410668 2.2:-68502617 MS.gene01465:CDS
AAACATTACTTGAAACTGTT+GGG 0.416514 2.2:+68501069 None:intergenic
TCAAATTTCATTCCAACCCT+TGG 0.416794 2.2:+68502970 None:intergenic
CTTCTTAAAATATACTTCTC+AGG 0.433030 2.2:+68501338 None:intergenic
ATGTAGATTTGTTTGTTGTA+AGG 0.434039 2.2:-68502842 MS.gene01465:CDS
GAAACATTACTTGAAACTGT+TGG 0.441612 2.2:+68501068 None:intergenic
TGACATCCGTAAATGTTGAT+TGG 0.442141 2.2:-68502996 MS.gene01465:CDS
GCAAGCATGTGTGTTGTCTC+TGG 0.449397 2.2:+68502664 None:intergenic
TGGCGTTGTGCAAGATGTTA+GGG 0.450029 2.2:-68501294 MS.gene01465:CDS
ACTTGAGACACTTGACTACA+TGG 0.464898 2.2:+68500927 None:intergenic
ATCTTGCACAACGCCACTTC+GGG 0.465364 2.2:+68501301 None:intergenic
ATCACACTTACACGTTATGA+TGG 0.466378 2.2:-68502739 MS.gene01465:CDS
AGATTTGTTTGTTGTAAGGA+AGG 0.482622 2.2:-68502838 MS.gene01465:CDS
TAAAATATACTTCTCAGGAA+TGG 0.483384 2.2:+68501343 None:intergenic
CGCAAAAGCGGCATAAGAGT+TGG 0.488283 2.2:-68500998 MS.gene01465:CDS
CATCTTGCACAACGCCACTT+CGG 0.498150 2.2:+68501300 None:intergenic
AGTTTCAAGTAATGTTTCTA+GGG 0.511152 2.2:-68501063 MS.gene01465:CDS
AGTGTCTCAAGTATATCATA+TGG 0.522885 2.2:-68500916 MS.gene01465:CDS
AGCATAAACTGATTTGATCC+AGG 0.534474 2.2:+68501874 None:intergenic
GGTCGATGGAGTATCTTGTT+CGG 0.535349 2.2:-68500895 MS.gene01465:CDS
CAACTTATGAGCACACATGC+AGG 0.539062 2.2:-68502559 MS.gene01465:CDS
GTTGATTGGAAGCCAAGGGT+TGG 0.540661 2.2:-68502982 MS.gene01465:CDS
TACACGTTATGATGGGAAGT+TGG 0.549441 2.2:-68502731 MS.gene01465:CDS
CAAGTATATCATATGGTCGA+TGG 0.554858 2.2:-68500909 MS.gene01465:CDS
TATGAGCCACGACAAATACA+AGG 0.558713 2.2:-68500861 MS.gene01465:CDS
TGAGTCCCTTGTATTTGTCG+TGG 0.560216 2.2:+68500855 None:intergenic
GATTTGTTTGTTGTAAGGAA+GGG 0.580884 2.2:-68502837 MS.gene01465:CDS
CTACATGGTTGCTCTCTAGG+TGG 0.583984 2.2:+68500942 None:intergenic
AGTCCTCACATAAGCTTGCA+AGG 0.585698 2.2:-68501658 MS.gene01465:intron
ATGATCTTCATGATAACACC+TGG 0.589928 2.2:-68501892 MS.gene01465:CDS
AACTTATGAGCACACATGCA+GGG 0.592671 2.2:-68502558 MS.gene01465:CDS
AAATGTTGATTGGAAGCCAA+GGG 0.593917 2.2:-68502986 MS.gene01465:CDS
GCAGGGCATAGATCTAATGT+TGG 0.596510 2.2:-68502541 MS.gene01465:CDS
TAAATGTTGATTGGAAGCCA+AGG 0.602713 2.2:-68502987 MS.gene01465:CDS
GCAAGGTCTGTCTCACTAAG+TGG 0.604947 2.2:+68500713 None:intergenic
TTTCATAAAAGGTGCAGCTG+AGG 0.605578 2.2:-68501207 MS.gene01465:CDS
TGAGGCATCACCTTGTGAAG+AGG 0.612403 2.2:-68501189 MS.gene01465:CDS
TCACACTTACACGTTATGAT+GGG 0.613020 2.2:-68502738 MS.gene01465:CDS
ATGAAGAAAGCAGTAACACT+TGG 0.614713 2.2:-68501824 MS.gene01465:CDS
CCAATCAGTGTAATGCTGCA+AGG 0.621517 2.2:+68500696 None:intergenic
CGGTCAAACGCCAAAGACAA+CGG 0.631949 2.2:-68501110 MS.gene01465:CDS
TCTCTGGAGATAGCAGCTCA+TGG 0.634385 2.2:+68502680 None:intergenic
TAATGTTGGATTTACACGAG+TGG 0.643534 2.2:-68502527 MS.gene01465:CDS
GGCGTTGTGCAAGATGTTAG+GGG 0.670016 2.2:-68501293 MS.gene01465:CDS
TAACCTTGCAAGCTTATGTG+AGG 0.674762 2.2:+68501655 None:intergenic
TGGACAAGAGATGCCCGAAG+TGG 0.678714 2.2:-68501314 MS.gene01465:CDS
GCGTTGTGCAAGATGTTAGG+GGG 0.680564 2.2:-68501292 MS.gene01465:CDS
TGTCGTGGCTCATAAACTGG+AGG 0.687831 2.2:+68500870 None:intergenic
GTAAGAAAATAATGGAACGT+CGG 0.713792 2.2:-68501130 MS.gene01465:CDS
ATGAGCCACGACAAATACAA+GGG 0.736791 2.2:-68500860 MS.gene01465:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGCTATTAAAAAAAAAT+GGG - chr2.2:68501839-68501858 MS.gene01465:CDS 10.0%
!! TTTATGCTATTAAAAAAAAA+TGG - chr2.2:68501838-68501857 MS.gene01465:CDS 10.0%
!!! TTTTTTTTAAAAAATTATGC+AGG - chr2.2:68502959-68502978 MS.gene01465:CDS 10.0%
!!! AATAACACTATCCAATATTT+TGG + chr2.2:68502230-68502249 None:intergenic 20.0%
!!! AATTCTTCAAACATTTTGAA+CGG - chr2.2:68501973-68501992 MS.gene01465:intron 20.0%
! AAACATTACTTGAAACTGTT+GGG + chr2.2:68502631-68502650 None:intergenic 25.0%
! AATTGCATGATTTCCAAATT+CGG + chr2.2:68501957-68501976 None:intergenic 25.0%
! ATGTGAATATGTCATTACTA+TGG - chr2.2:68502196-68502215 MS.gene01465:intron 25.0%
! CTTCTTAAAATATACTTCTC+AGG + chr2.2:68502362-68502381 None:intergenic 25.0%
! GTTGTCTCAAATTTCATAAA+AGG - chr2.2:68502479-68502498 MS.gene01465:intron 25.0%
! TAAAAGAAGACAAAGAAGTA+TGG - chr2.2:68501212-68501231 MS.gene01465:CDS 25.0%
! TAAAATATACTTCTCAGGAA+TGG + chr2.2:68502357-68502376 None:intergenic 25.0%
! TATGCGAACAAAAATAAAGA+CGG - chr2.2:68500820-68500839 MS.gene01465:intron 25.0%
! TATGCTTATCTTCAAATTCA+TGG + chr2.2:68500996-68501015 None:intergenic 25.0%
! TCATCATAAGTGTAAATGTA+AGG + chr2.2:68502924-68502943 None:intergenic 25.0%
! TGTGAATATGTCATTACTAT+GGG - chr2.2:68502197-68502216 MS.gene01465:intron 25.0%
! TTTCTTTCATGCATATCAAA+TGG - chr2.2:68501296-68501315 MS.gene01465:CDS 25.0%
!! AACAAATGACAAATGTGTTT+TGG - chr2.2:68501328-68501347 MS.gene01465:CDS 25.0%
!! AGTTTCAAGTAATGTTTCTA+GGG - chr2.2:68502634-68502653 MS.gene01465:CDS 25.0%
!! ATTCTTCAAACATTTTGAAC+GGG - chr2.2:68501974-68501993 MS.gene01465:intron 25.0%
!! TAGATGAAGTTCATCAATTT+TGG - chr2.2:68500755-68500774 MS.gene01465:intron 25.0%
!! TGTAGAAAGTTTGAAACATT+TGG - chr2.2:68502281-68502300 MS.gene01465:intron 25.0%
!!! AGAAGTATATTTTAAGAAGG+TGG - chr2.2:68502363-68502382 MS.gene01465:intron 25.0%
!!! ATGTAGATTTGTTTGTTGTA+AGG - chr2.2:68500855-68500874 MS.gene01465:CDS 25.0%
!!! CTGAGAAGTATATTTTAAGA+AGG - chr2.2:68502360-68502379 MS.gene01465:intron 25.0%
!!! TAAGGATAGTCACTTTTAAA+AGG + chr2.2:68502906-68502925 None:intergenic 25.0%
AGACAAGTGATTCATTTAAG+TGG - chr2.2:68501511-68501530 MS.gene01465:intron 30.0%
AGTGTCTCAAGTATATCATA+TGG - chr2.2:68502781-68502800 MS.gene01465:CDS 30.0%
CAAAATGGAATTAAACACCT+TGG - chr2.2:68501672-68501691 MS.gene01465:CDS 30.0%
GAAACATTACTTGAAACTGT+TGG + chr2.2:68502632-68502651 None:intergenic 30.0%
GTGAATATGTCATTACTATG+GGG - chr2.2:68502198-68502217 MS.gene01465:intron 30.0%
TGAATATGTCATTACTATGG+GGG - chr2.2:68502199-68502218 MS.gene01465:intron 30.0%
TGATATGCATGAAAGAAAGA+TGG + chr2.2:68501294-68501313 None:intergenic 30.0%
TGTCATGCGTAAGAAAATAA+TGG - chr2.2:68502559-68502578 MS.gene01465:CDS 30.0%
! ATATTTTCAGCGACAATTGT+TGG - chr2.2:68501263-68501282 MS.gene01465:CDS 30.0%
! ATTTTGGATTACGCGTATTT+TGG - chr2.2:68501366-68501385 MS.gene01465:CDS 30.0%
! CAGTTTCAAGTAATGTTTCT+AGG - chr2.2:68502633-68502652 MS.gene01465:CDS 30.0%
! GTAAGAAAATAATGGAACGT+CGG - chr2.2:68502567-68502586 MS.gene01465:CDS 30.0%
! GTGTGATGCAAATATGATTT+TGG - chr2.2:68501350-68501369 MS.gene01465:CDS 30.0%
!! AGATTTGTTTGTTGTAAGGA+AGG - chr2.2:68500859-68500878 MS.gene01465:CDS 30.0%
!! ATTGATTTGGCTAATGATTC+TGG - chr2.2:68501093-68501112 MS.gene01465:CDS 30.0%
!! GATTTGTTTGTTGTAAGGAA+GGG - chr2.2:68500860-68500879 MS.gene01465:CDS 30.0%
!!! GGTTTTTTCTTGAATATCGT+TGG + chr2.2:68502662-68502681 None:intergenic 30.0%
AAACCAGAAAACAAAGCAAG+AGG + chr2.2:68501441-68501460 None:intergenic 35.0%
ATCACACTTACACGTTATGA+TGG - chr2.2:68500958-68500977 MS.gene01465:CDS 35.0%
ATCTTGTATGCAACCGAATT+TGG - chr2.2:68501941-68501960 MS.gene01465:intron 35.0%
ATGAAGAAAGCAGTAACACT+TGG - chr2.2:68501873-68501892 MS.gene01465:CDS 35.0%
ATGATCTTCATGATAACACC+TGG - chr2.2:68501805-68501824 MS.gene01465:CDS 35.0%
CAAGTATATCATATGGTCGA+TGG - chr2.2:68502788-68502807 MS.gene01465:CDS 35.0%
CTTTCTACAACTACAAGCAA+TGG + chr2.2:68502270-68502289 None:intergenic 35.0%
TAATGTTGGATTTACACGAG+TGG - chr2.2:68501170-68501189 MS.gene01465:CDS 35.0%
TAGCTTAACAGCGTATTTGA+TGG - chr2.2:68502868-68502887 MS.gene01465:CDS 35.0%
TCAAATTTCATTCCAACCCT+TGG + chr2.2:68500730-68500749 None:intergenic 35.0%
TCACACTTACACGTTATGAT+GGG - chr2.2:68500959-68500978 MS.gene01465:CDS 35.0%
TCACCAATACTGATCCAAAT+GGG - chr2.2:68502077-68502096 MS.gene01465:intron 35.0%
TGACATCCGTAAATGTTGAT+TGG - chr2.2:68500701-68500720 MS.gene01465:CDS 35.0%
TGGCTTCCAATCAACATTTA+CGG + chr2.2:68500710-68500729 None:intergenic 35.0%
! AAATGTTGATTGGAAGCCAA+GGG - chr2.2:68500711-68500730 MS.gene01465:CDS 35.0%
! AGACAAAGAAGTATGGTGTA+CGG - chr2.2:68501219-68501238 MS.gene01465:CDS 35.0%
! TAAATGTTGATTGGAAGCCA+AGG - chr2.2:68500710-68500729 MS.gene01465:CDS 35.0%
!! AGCATAAACTGATTTGATCC+AGG + chr2.2:68501826-68501845 None:intergenic 35.0%
!!! ATTTTGAGATCCTCTTCACA+AGG + chr2.2:68502521-68502540 None:intergenic 35.0%
!!! GATTCAGACTCTTTTTTCTC+TGG + chr2.2:68502173-68502192 None:intergenic 35.0%
!!! TTTTGGTGATGTTGTGTCAT+TGG - chr2.2:68501383-68501402 MS.gene01465:CDS 35.0%
AACTTATGAGCACACATGCA+GGG - chr2.2:68501139-68501158 MS.gene01465:CDS 40.0%
ACACCTTGGAAACAAGATGA+AGG - chr2.2:68501686-68501705 MS.gene01465:CDS 40.0%
ACTTGAGACACTTGACTACA+TGG + chr2.2:68502773-68502792 None:intergenic 40.0%
ACTTGGCACTTGTGTCAAAA+TGG - chr2.2:68501657-68501676 MS.gene01465:intron 40.0%
ATGAGCCACGACAAATACAA+GGG - chr2.2:68502837-68502856 MS.gene01465:CDS 40.0%
ATTTGTCGTGGCTCATAAAC+TGG + chr2.2:68502833-68502852 None:intergenic 40.0%
CACCAATACTGATCCAAATG+GGG - chr2.2:68502078-68502097 MS.gene01465:intron 40.0%
CACCTTGGAAACAAGATGAA+GGG - chr2.2:68501687-68501706 MS.gene01465:CDS 40.0%
GCAAGCACATGAGATTGATT+TGG - chr2.2:68501080-68501099 MS.gene01465:CDS 40.0%
GTCACCAATACTGATCCAAA+TGG - chr2.2:68502076-68502095 MS.gene01465:intron 40.0%
GTGTGTATACTTTCCCCATT+TGG + chr2.2:68502094-68502113 None:intergenic 40.0%
TAACCTTGCAAGCTTATGTG+AGG + chr2.2:68502045-68502064 None:intergenic 40.0%
TATGAGCCACGACAAATACA+AGG - chr2.2:68502836-68502855 MS.gene01465:CDS 40.0%
TCTACAACTACAAGCAATGG+AGG + chr2.2:68502267-68502286 None:intergenic 40.0%
TGGGGGAACTTCCAAAATAT+TGG - chr2.2:68502216-68502235 MS.gene01465:intron 40.0%
TTCCCCATTTGGATCAGTAT+TGG + chr2.2:68502083-68502102 None:intergenic 40.0%
! CTTCGTGTTCTAGACAACTT+TGG + chr2.2:68502449-68502468 None:intergenic 40.0%
! TACACGTTATGATGGGAAGT+TGG - chr2.2:68500966-68500985 MS.gene01465:CDS 40.0%
! TTTCATAAAAGGTGCAGCTG+AGG - chr2.2:68502490-68502509 MS.gene01465:intron 40.0%
!! CAAAAAGAGCATCGCAAAAG+CGG - chr2.2:68502687-68502706 MS.gene01465:CDS 40.0%
!! TTTCTGGTTTCAACCACTAC+CGG - chr2.2:68501451-68501470 MS.gene01465:intron 40.0%
!!! AGACCTCTTGCTTTGTTTTC+TGG - chr2.2:68501435-68501454 MS.gene01465:intron 40.0%
!!! CTAGGTGGAGCACTTTTTTT+CGG + chr2.2:68502743-68502762 None:intergenic 40.0%
AAGCAAGAGGTCTATTCGCA+TGG + chr2.2:68501428-68501447 None:intergenic 45.0%
AGTCCTCACATAAGCTTGCA+AGG - chr2.2:68502039-68502058 MS.gene01465:intron 45.0%
AGTGCCAAGTGCATAAACCA+TGG + chr2.2:68501647-68501666 None:intergenic 45.0%
CAACTTATGAGCACACATGC+AGG - chr2.2:68501138-68501157 MS.gene01465:CDS 45.0%
CATAAACCATGGTGAGTCTC+GGG + chr2.2:68501636-68501655 None:intergenic 45.0%
CTCACCATGGTTTATGCACT+TGG - chr2.2:68501640-68501659 MS.gene01465:intron 45.0%
CTTGGAAACAAGATGAAGGG+AGG - chr2.2:68501690-68501709 MS.gene01465:CDS 45.0%
GACCCAAGCTGCTTCAAAAT+CGG + chr2.2:68501769-68501788 None:intergenic 45.0%
GCAGGGCATAGATCTAATGT+TGG - chr2.2:68501156-68501175 MS.gene01465:CDS 45.0%
GCATAAACCATGGTGAGTCT+CGG + chr2.2:68501637-68501656 None:intergenic 45.0%
GTCATGAATGCCGTTGTCTT+TGG + chr2.2:68502600-68502619 None:intergenic 45.0%
TGACTACATGGTTGCTCTCT+AGG + chr2.2:68502761-68502780 None:intergenic 45.0%
TGAGTCCCTTGTATTTGTCG+TGG + chr2.2:68502845-68502864 None:intergenic 45.0%
TGATCGGTGAAGACAGTCTT+TGG + chr2.2:68501576-68501595 None:intergenic 45.0%
TGGCGTTGTGCAAGATGTTA+GGG - chr2.2:68502403-68502422 MS.gene01465:intron 45.0%
TGTCTTCACCGATCAAGATC+CGG - chr2.2:68501581-68501600 MS.gene01465:intron 45.0%
! CTCCCTTCATCTTGTTTCCA+AGG + chr2.2:68501692-68501711 None:intergenic 45.0%
! GGTCGATGGAGTATCTTGTT+CGG - chr2.2:68502802-68502821 MS.gene01465:CDS 45.0%
! TGCGATGCTCTTTTTGTGCT+AGG + chr2.2:68502683-68502702 None:intergenic 45.0%
!! TTCTGGTTTCAACCACTACC+GGG - chr2.2:68501452-68501471 MS.gene01465:intron 45.0%
!!! AAGCCGATTTTGAAGCAGCT+TGG - chr2.2:68501763-68501782 MS.gene01465:CDS 45.0%
!!! AGCCGATTTTGAAGCAGCTT+GGG - chr2.2:68501764-68501783 MS.gene01465:CDS 45.0%
ATCTTGCACAACGCCACTTC+GGG + chr2.2:68502399-68502418 None:intergenic 50.0%
CACCAAAAATGACCGAACCC+CGG + chr2.2:68501473-68501492 None:intergenic 50.0%
CATCACTTCAGCAAGTGCCT+TGG + chr2.2:68501613-68501632 None:intergenic 50.0%
CATCTTGCACAACGCCACTT+CGG + chr2.2:68502400-68502419 None:intergenic 50.0%
CGCAAAAGCGGCATAAGAGT+TGG - chr2.2:68502699-68502718 MS.gene01465:CDS 50.0%
CGGTCAAACGCCAAAGACAA+CGG - chr2.2:68502587-68502606 MS.gene01465:CDS 50.0%
CTACATGGTTGCTCTCTAGG+TGG + chr2.2:68502758-68502777 None:intergenic 50.0%
CTTGCTTATGCTGCACGTAC+TGG - chr2.2:68500778-68500797 MS.gene01465:intron 50.0%
GCAAGATGTTAGGGGGAAGA+CGG - chr2.2:68502412-68502431 MS.gene01465:intron 50.0%
GCAAGCATGTGTGTTGTCTC+TGG + chr2.2:68501036-68501055 None:intergenic 50.0%
GCAAGGTCTGTCTCACTAAG+TGG + chr2.2:68502987-68503006 None:intergenic 50.0%
GCGTTGTGCAAGATGTTAGG+GGG - chr2.2:68502405-68502424 MS.gene01465:intron 50.0%
GGCGTTGTGCAAGATGTTAG+GGG - chr2.2:68502404-68502423 MS.gene01465:intron 50.0%
GTGGCGTTGTGCAAGATGTT+AGG - chr2.2:68502402-68502421 MS.gene01465:intron 50.0%
GTTGATTGGAAGCCAAGGGT+TGG - chr2.2:68500715-68500734 MS.gene01465:CDS 50.0%
TGTCGTGGCTCATAAACTGG+AGG + chr2.2:68502830-68502849 None:intergenic 50.0%
TTTCAACCACTACCGGGGTT+CGG - chr2.2:68501458-68501477 MS.gene01465:intron 50.0%
! TCTCTGGAGATAGCAGCTCA+TGG + chr2.2:68501020-68501039 None:intergenic 50.0%
! TCTGGTTTCAACCACTACCG+GGG - chr2.2:68501453-68501472 MS.gene01465:intron 50.0%
! TGAGGCATCACCTTGTGAAG+AGG - chr2.2:68502508-68502527 MS.gene01465:CDS 50.0%
!! TACCGGGGTTCGGTCATTTT+TGG - chr2.2:68501468-68501487 MS.gene01465:intron 50.0%
!! TATGCTGCACGTACTGGCTT+TGG - chr2.2:68500784-68500803 MS.gene01465:intron 50.0%
AAATGACCGAACCCCGGTAG+TGG + chr2.2:68501467-68501486 None:intergenic 55.0%
AGTATGGTGTACGGCGAAGC+TGG - chr2.2:68501228-68501247 MS.gene01465:CDS 55.0%
CACCGATCAAGATCCGGCAA+TGG - chr2.2:68501587-68501606 MS.gene01465:intron 55.0%
GGCCATTGCCGGATCTTGAT+CGG + chr2.2:68501592-68501611 None:intergenic 55.0%
TCAAGATCCGGCAATGGCCA+AGG - chr2.2:68501593-68501612 MS.gene01465:intron 55.0%
TGGACAAGAGATGCCCGAAG+TGG - chr2.2:68502383-68502402 MS.gene01465:intron 55.0%
GCAAGTGCCTTGGCCATTGC+CGG + chr2.2:68501603-68501622 None:intergenic 60.0%
GTGATGCCCGAGACTCACCA+TGG - chr2.2:68501627-68501646 MS.gene01465:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 68500700 68503019 68500700 ID=MS.gene01465
chr2.2 mRNA 68500700 68503019 68500700 ID=MS.gene01465.t1;Parent=MS.gene01465
chr2.2 exon 68502491 68503019 68502491 ID=MS.gene01465.t1.exon1;Parent=MS.gene01465.t1
chr2.2 CDS 68502491 68503019 68502491 ID=cds.MS.gene01465.t1;Parent=MS.gene01465.t1
chr2.2 exon 68501659 68501938 68501659 ID=MS.gene01465.t1.exon2;Parent=MS.gene01465.t1
chr2.2 CDS 68501659 68501938 68501659 ID=cds.MS.gene01465.t1;Parent=MS.gene01465.t1
chr2.2 exon 68500830 68501439 68500830 ID=MS.gene01465.t1.exon3;Parent=MS.gene01465.t1
chr2.2 CDS 68500830 68501439 68500830 ID=cds.MS.gene01465.t1;Parent=MS.gene01465.t1
chr2.2 exon 68500700 68500738 68500700 ID=MS.gene01465.t1.exon4;Parent=MS.gene01465.t1
chr2.2 CDS 68500700 68500738 68500700 ID=cds.MS.gene01465.t1;Parent=MS.gene01465.t1
Gene Sequence

>MS.gene01465

ATGACATCCGTAAATGTTGATTGGAAGCCAAGGGTTGGAATGAAATTTGACAATATAGATGAAGTTCATCAATTTTGGCTTGCTTATGCTGCACGTACTGGCTTTGGAATTAGAACACGTTATGCGAACAAAAATAAAGACGGCATTGTATCATCATGTAGATTTGTTTGTTGTAAGGAAGGGCTGCGAAAGATAAATGAAGCAAATGCTTTTGTTAGCAAACACAGAAAAGAGACTAGAACAGATTGCAATGTAAAGATCACACTTACACGTTATGATGGGAAGTTGGTCATCCATGAATTTGAAGATAAGCATAACCATGAGCTGCTATCTCCAGAGACAACACACATGCTTGCATCACATAGAAAGATAACTGAAGTGCAAGCACATGAGATTGATTTGGCTAATGATTCTGGATTAATGCAAAAGTCAACATTTCAACTTATGAGCACACATGCAGGGCATAGATCTAATGTTGGATTTACACGAGTGGATGTAAAAAATTACATTAGTAAAAGAAGACAAAGAAGTATGGTGTACGGCGAAGCTGGATGTATTTCACAATATTTTCAGCGACAATTGTTGGAGAATCCATCTTTCTTTCATGCATATCAAATGGATATAGAAGAACAAATGACAAATGTGTTTTGGTGTGATGCAAATATGATTTTGGATTACGCGTATTTTGGTGATGTTGTGTCATTGGACACTACATATTGTACTAACCATGCGAATAGACCTCTTGCTTTGTTTTCTGGTTTCAACCACTACCGGGGTTCGGTCATTTTTGGTGCAGCACTACTGTATGATGAGACAAGTGATTCATTTAAGTGGTTGTTTGATACATTCTTACAAGCACACAACAACAAAAAACCAAAGACTGTCTTCACCGATCAAGATCCGGCAATGGCCAAGGCACTTGCTGAAGTGATGCCCGAGACTCACCATGGTTTATGCACTTGGCACTTGTGTCAAAATGGAATTAAACACCTTGGAAACAAGATGAAGGGAGGAAGTTATTTTTTAAGAGATTTCAAGATGTGCATGTATGATATTGACATTGAAGCCGATTTTGAAGCAGCTTGGGTCAAATTAGTCAATGAATATGATCTTCATGATAACACCTGGATCAAATCAGTTTATGCTATTAAAAAAAAATGGGCTTCATGTTATATGAAGAAAGCAGTAACACTTGGTATGCGAAGTACTCAAATCAGTGAAAGTTTGAATGCTCACTTCAAATCTTGTATGCAACCGAATTTGGAAATCATGCAATTCTTCAAACATTTTGAACGGGTTGTTGAAGAGAAGAGAGAGAATGAATTGAGTTGTGTGTATGAGTCCTCACATAAGCTTGCAAGGTTAGTATATGAGAAGTCACCAATACTGATCCAAATGGGGAAAGTATACACACACACTGTATTTGAGTTATTTCAAAACGAGTTTAACTCGTTCTTAGCTTTATCGATGCCAGAGAAAAAAGAGTCTGAATCTTTATGTGAATATGTCATTACTATGGGGGAACTTCCAAAATATTGGATAGTGTTATTTGATCGTGCTTCAACCTCCATTGCTTGTAGTTGTAGAAAGTTTGAAACATTTGGCATACTTTGTTCACATGCATTGAAAGTGATTGAAGCAAATGATGTTAAAGCCATTCCTGAGAAGTATATTTTAAGAAGGTGGACAAGAGATGCCCGAAGTGGCGTTGTGCAAGATGTTAGGGGGAAGACGGTTGAAGCAGATCCAAAGTTGTCTAGAACACGAAGATATAGACAAGTTGTCTCAAATTTCATAAAAGGTGCAGCTGAGGCATCACCTTGTGAAGAGGATCTCAAAATTGTTGAAGATTGTGTAGATGTCATGCGTAAGAAAATAATGGAACGTCGGTCAAACGCCAAAGACAACGGCATTCATGACAATGATAACCCAACAGTTTCAAGTAATGTTTCTAGGGAACCAACGATATTCAAGAAAAAACCTAGCACAAAAAGAGCATCGCAAAAGCGGCATAAGAGTTGGATTGAGCAACAATCTGCTCCGAAAAAAAGTGCTCCACCTAGAGAGCAACCATGTAGTCAAGTGTCTCAAGTATATCATATGGTCGATGGAGTATCTTGTTCGGCACCTCCAGTTTATGAGCCACGACAAATACAAGGGACTCAATTTAGCTTAACAGCGTATTTGATGGTAATTTATTCATCCTTTTAAAAGTGACTATCCTTACATTTACACTTATGATGATATTAACTAGTCTTTTTTTTTTTAAAAAATTATGCAGGCACCACTTAGTGAGACAGACCTTGCAGCATTACACTGA
Protein sequence

>MS.gene01465.t1

MTSVNVDWKPRVGMKFDNIDEVHQFWLAYAARTGFGIRTRYANKNKDGIVSSCRFVCCKEGLRKINEANAFVSKHRKETRTDCNVKITLTRYDGKLVIHEFEDKHNHELLSPETTHMLASHRKITEVQAHEIDLANDSGLMQKSTFQLMSTHAGHRSNVGFTRVDVKNYISKRRQRTWVKLVNEYDLHDNTWIKSVYAIKKKWASCYMKKAVTLGMRSTQISESLNAHFKSCMQPNLEIMQFFKHFERVVEEKRENELSCVYESSHKLASCRKFETFGILCSHALKVIEANDVKAIPEKYILRRWTRDARSGVVQDVRGKTVEADPKLSRTRRYRQVVSNFIKGAAEASPCEEDLKIVEDCVDVMRKKIMERRSNAKDNGIHDNDNPTVSSNVSREPTIFKKKPSTKRASQKRHKSWIEQQSAPKKSAPPREQPCSQVSQVYHMVDGVSCSAPPVYEPRQIQGTQFSLTAYLMAPLSETDLAALH