Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014789.t1 | XP_003603464.1 | 95.4 | 259 | 12 | 0 | 1 | 259 | 158 | 416 | 5.00E-133 | 483.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014789.t1 | Q84MB2 | 42.4 | 238 | 103 | 9 | 26 | 254 | 147 | 359 | 1.5e-32 | 141.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014789.t1 | G7JBP9 | 95.4 | 259 | 12 | 0 | 1 | 259 | 158 | 416 | 3.6e-133 | 483.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014789.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014789.t1 | MTR_3g107950 | 95.367 | 259 | 12 | 0 | 1 | 259 | 158 | 416 | 3.14e-180 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014789.t1 | AT4G32570 | 42.437 | 238 | 103 | 9 | 26 | 254 | 147 | 359 | 8.99e-32 | 120 |
| MS.gene014789.t1 | AT4G32570 | 47.482 | 139 | 50 | 3 | 26 | 161 | 147 | 265 | 4.24e-30 | 115 |
Find 72 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGAACCGTCGGATTTC+TGG | 0.144469 | 3.3:+88231236 | None:intergenic |
| CTAAGATTGATGCGAATAAA+TGG | 0.197424 | 3.3:-88234051 | MS.gene014789:CDS |
| ACCAGCTTTGCAGTAGATTT+TGG | 0.210010 | 3.3:+88231910 | None:intergenic |
| AGCAGTAGCAGCTGTGTTTA+TGG | 0.223812 | 3.3:+88233838 | None:intergenic |
| ATTATATTAGTTAGAGGTTT+TGG | 0.247280 | 3.3:+88233773 | None:intergenic |
| GTTTATGGAACTTAAAATTC+CGG | 0.317860 | 3.3:+88233853 | None:intergenic |
| GATGTTATAATGGCTTTAGC+TGG | 0.336522 | 3.3:-88231967 | MS.gene014789:CDS |
| CATAGTGGAGAAAATGAAAC+AGG | 0.343306 | 3.3:-88231871 | MS.gene014789:CDS |
| AAGCTTAGGGATACCATTTC+AGG | 0.375711 | 3.3:-88233935 | MS.gene014789:CDS |
| GATTCTATTATATTAGTTAG+AGG | 0.379814 | 3.3:+88233767 | None:intergenic |
| TTTATGGAACTTAAAATTCC+GGG | 0.389295 | 3.3:+88233854 | None:intergenic |
| ACCAAAATCTACTGCAAAGC+TGG | 0.409213 | 3.3:-88231911 | MS.gene014789:CDS |
| CGCATCAATCTTAGTGTTGG+TGG | 0.409917 | 3.3:+88234060 | None:intergenic |
| CGCGGAGGATGCTGCATGGA+AGG | 0.412485 | 3.3:+88234001 | None:intergenic |
| CATGGGAAGTTGTCTGCTAC+TGG | 0.416162 | 3.3:-88231814 | MS.gene014789:CDS |
| AACTAGCTTCAAACAAGCTT+AGG | 0.417740 | 3.3:-88233949 | MS.gene014789:CDS |
| TATGCAGGCTGATGTTATAA+TGG | 0.438508 | 3.3:-88231977 | MS.gene014789:intron |
| TGATGATGTCCACCAACATA+AGG | 0.439728 | 3.3:-88233570 | MS.gene014789:intron |
| GATAAATGAAGGGCCTGAAA+TGG | 0.460185 | 3.3:+88233922 | None:intergenic |
| TAAGCTTGTTTGAAGCTAGT+TGG | 0.461069 | 3.3:+88233951 | None:intergenic |
| ATAGTCATCTGGCGGCTGGC+AGG | 0.466446 | 3.3:+88233620 | None:intergenic |
| GCATTCCCACAAGAGCTTCA+TGG | 0.467087 | 3.3:-88231832 | MS.gene014789:CDS |
| CATTCCCACAAGAGCTTCAT+GGG | 0.469855 | 3.3:-88231831 | MS.gene014789:CDS |
| TAAGATTGATGCGAATAAAT+GGG | 0.473687 | 3.3:-88234050 | MS.gene014789:CDS |
| GAAGCTAGTTGGTGTGCAAA+AGG | 0.473984 | 3.3:+88233962 | None:intergenic |
| GGAGTAGATACACGATCAAC+AGG | 0.476638 | 3.3:+88231769 | None:intergenic |
| CTGGGTCAAATGGTGGATCT+TGG | 0.478685 | 3.3:-88231948 | MS.gene014789:CDS |
| ATGGCTTTAGCTGGGTCAAA+TGG | 0.490826 | 3.3:-88231958 | MS.gene014789:CDS |
| GCTGATGAAGGATCTAGAAC+TGG | 0.491143 | 3.3:-88233887 | MS.gene014789:CDS |
| AACTTCCCATGAAGCTCTTG+TGG | 0.491396 | 3.3:+88231826 | None:intergenic |
| CTCCATAAAAGATAGTCATC+TGG | 0.496051 | 3.3:+88233609 | None:intergenic |
| ATGCAGCATCCTCCGCGTGC+AGG | 0.496967 | 3.3:-88233995 | MS.gene014789:CDS |
| ACTTCCCATGAAGCTCTTGT+GGG | 0.498210 | 3.3:+88231827 | None:intergenic |
| ACTAGCTTCAAACAAGCTTA+GGG | 0.503406 | 3.3:-88233948 | MS.gene014789:CDS |
| GCAGGCTGAGAGATAAATGA+AGG | 0.506389 | 3.3:+88233911 | None:intergenic |
| GGATCTGCTGCTTGAACCGT+CGG | 0.509893 | 3.3:+88231228 | None:intergenic |
| GGATCTAGAACTGGAATCAA+AGG | 0.514477 | 3.3:-88233878 | MS.gene014789:CDS |
| TCTCAGCCTGCCGCTGATGA+AGG | 0.519106 | 3.3:-88233899 | MS.gene014789:CDS |
| ATTCGCATCAATCTTAGTGT+TGG | 0.520039 | 3.3:+88234057 | None:intergenic |
| CTAGATCCTTCATCAGCGGC+AGG | 0.525101 | 3.3:+88233893 | None:intergenic |
| CGGTCTATTCTCATGAATGC+TGG | 0.526152 | 3.3:-88234025 | MS.gene014789:CDS |
| GGCAGTTCTAGCCGTGCCGT+TGG | 0.541164 | 3.3:-88231793 | MS.gene014789:CDS |
| AATATCTGAGAACTAGAAGA+TGG | 0.544323 | 3.3:+88234091 | None:intergenic |
| AAAGATAGTCATCTGGCGGC+TGG | 0.544851 | 3.3:+88233616 | None:intergenic |
| ATGTTATAATGGCTTTAGCT+GGG | 0.549931 | 3.3:-88231966 | MS.gene014789:CDS |
| AAGGTTGGACCTTATGTTGG+TGG | 0.550076 | 3.3:+88233561 | None:intergenic |
| ATTTCATCTGCAGTGCTGCT+CGG | 0.551203 | 3.3:-88233806 | MS.gene014789:CDS |
| GCGGAGGATGCTGCATGGAA+GGG | 0.553889 | 3.3:+88234002 | None:intergenic |
| GCATCAATCTTAGTGTTGGT+GGG | 0.554769 | 3.3:+88234061 | None:intergenic |
| TACAAGGTTGGACCTTATGT+TGG | 0.561474 | 3.3:+88233558 | None:intergenic |
| AGAACTGGAATCAAAGGCCC+CGG | 0.567203 | 3.3:-88233872 | MS.gene014789:CDS |
| CCGGTTGTAGGGGCGCATCA+AGG | 0.580384 | 3.3:-88231279 | MS.gene014789:intron |
| AACGATAGTAACTTGCATAG+TGG | 0.584799 | 3.3:-88231886 | MS.gene014789:CDS |
| TGCACGCGGAGGATGCTGCA+TGG | 0.586678 | 3.3:+88233997 | None:intergenic |
| GCTTTAGCTGGGTCAAATGG+TGG | 0.588269 | 3.3:-88231955 | MS.gene014789:CDS |
| GATCGTGTATCTACTCCAGC+CGG | 0.597972 | 3.3:-88231763 | MS.gene014789:intron |
| TACACGATCAACAGGTCCAA+CGG | 0.603243 | 3.3:+88231777 | None:intergenic |
| GATCAACAGGTCCAACGGCA+CGG | 0.605689 | 3.3:+88231782 | None:intergenic |
| GTATTGAGCAGCAGTCAACA+TGG | 0.625398 | 3.3:-88233650 | MS.gene014789:intron |
| TTGATGCGAATAAATGGGAA+CGG | 0.646108 | 3.3:-88234045 | MS.gene014789:CDS |
| AGTTCTAGATCCTTCATCAG+CGG | 0.651396 | 3.3:+88233889 | None:intergenic |
| TCAATCTTAGTGTTGGTGGG+TGG | 0.654121 | 3.3:+88234064 | None:intergenic |
| TTATGGAACTTAAAATTCCG+GGG | 0.662736 | 3.3:+88233855 | None:intergenic |
| TCATCTGCAGTGCTGCTCGG+TGG | 0.664281 | 3.3:-88233803 | MS.gene014789:CDS |
| CATAAAAGATAGTCATCTGG+CGG | 0.666315 | 3.3:+88233612 | None:intergenic |
| GGAGTCAACTGTCCTGCACG+CGG | 0.676528 | 3.3:+88233983 | None:intergenic |
| GTCAACTGTCCTGCACGCGG+AGG | 0.677451 | 3.3:+88233986 | None:intergenic |
| CAGGCTGAGAGATAAATGAA+GGG | 0.677535 | 3.3:+88233912 | None:intergenic |
| TAAAGATACCAGAAATCCGA+CGG | 0.679270 | 3.3:-88231244 | MS.gene014789:CDS |
| AACAGGGTTAGTGAGTAATG+TGG | 0.689431 | 3.3:-88231854 | MS.gene014789:CDS |
| ATAAGATAGATTTACCTTGG+GGG | 0.712059 | 3.3:+88233737 | None:intergenic |
| ATAGTGGAGAAAATGAAACA+GGG | 0.722474 | 3.3:-88231870 | MS.gene014789:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTAAATATATTAGAATAT+TGG | - | chr3.3:88233836-88233855 | MS.gene014789:CDS | 10.0% |
| !!! | AAATGATTTTAATGAAAAAT+TGG | + | chr3.3:88233103-88233122 | None:intergenic | 10.0% |
| !!! | ATTTTTCATTAAAATCATTT+AGG | - | chr3.3:88233103-88233122 | MS.gene014789:intron | 10.0% |
| !!! | TTTTTCATTAAAATCATTTA+GGG | - | chr3.3:88233104-88233123 | MS.gene014789:intron | 10.0% |
| !! | TCTAATATATTTAGAAAGAA+AGG | + | chr3.3:88233832-88233851 | None:intergenic | 15.0% |
| !!! | TTTAATGAAAAATTGGTTTT+TGG | + | chr3.3:88233096-88233115 | None:intergenic | 15.0% |
| !! | AAAGATCAAAGAAAATAAAC+AGG | + | chr3.3:88233151-88233170 | None:intergenic | 20.0% |
| !! | AAATTGTTCCTTAAAAAACT+CGG | - | chr3.3:88231845-88231864 | MS.gene014789:CDS | 20.0% |
| !! | AGTGAAAATAAATAGAAACA+AGG | + | chr3.3:88231606-88231625 | None:intergenic | 20.0% |
| !! | ATACATGTTAAAAAACCATT+CGG | + | chr3.3:88232718-88232737 | None:intergenic | 20.0% |
| !! | ATATAAGATAGATTTACCTT+GGG | + | chr3.3:88231565-88231584 | None:intergenic | 20.0% |
| !! | GATTCTATTATATTAGTTAG+AGG | + | chr3.3:88231533-88231552 | None:intergenic | 20.0% |
| !! | TAGACTTGATGTATAAATAT+TGG | - | chr3.3:88232948-88232967 | MS.gene014789:intron | 20.0% |
| !! | TATATAAGATAGATTTACCT+TGG | + | chr3.3:88231566-88231585 | None:intergenic | 20.0% |
| !!! | ATTATATTAGTTAGAGGTTT+TGG | + | chr3.3:88231527-88231546 | None:intergenic | 20.0% |
| !!! | TCTTTTCTATCAGATATTAT+TGG | + | chr3.3:88232132-88232151 | None:intergenic | 20.0% |
| !!! | TTTTAACAGTTACTTATCTA+AGG | - | chr3.3:88232236-88232255 | MS.gene014789:intron | 20.0% |
| ! | AAATACTTATACAAGTGACT+AGG | + | chr3.3:88232525-88232544 | None:intergenic | 25.0% |
| ! | AATAAGCATTAAAAACCGAA+TGG | - | chr3.3:88232700-88232719 | MS.gene014789:intron | 25.0% |
| ! | AATAATGCCTGAAATTAGTT+TGG | - | chr3.3:88231799-88231818 | MS.gene014789:CDS | 25.0% |
| ! | AATAGAATTGCTTAAGCTTT+GGG | - | chr3.3:88232168-88232187 | MS.gene014789:intron | 25.0% |
| ! | AATATTCTGATTTCTAAGTG+GGG | - | chr3.3:88232761-88232780 | MS.gene014789:intron | 25.0% |
| ! | AATCAAGAAAATATTCGAGT+TGG | + | chr3.3:88233892-88233911 | None:intergenic | 25.0% |
| ! | AATTCCCCTTAATATGATAT+CGG | - | chr3.3:88233683-88233702 | MS.gene014789:intron | 25.0% |
| ! | AGATAAGTAACTGTTAAAAC+CGG | + | chr3.3:88232235-88232254 | None:intergenic | 25.0% |
| ! | AGCTTAAGCAATTCTATTAT+TGG | + | chr3.3:88232166-88232185 | None:intergenic | 25.0% |
| ! | ATCATATTTCAGCCAAAATA+CGG | - | chr3.3:88231933-88231952 | MS.gene014789:CDS | 25.0% |
| ! | GAATATTCTGATTTCTAAGT+GGG | - | chr3.3:88232760-88232779 | MS.gene014789:intron | 25.0% |
| ! | GTTTATGGAACTTAAAATTC+CGG | + | chr3.3:88231447-88231466 | None:intergenic | 25.0% |
| ! | TAAGATTGATGCGAATAAAT+GGG | - | chr3.3:88231247-88231266 | MS.gene014789:CDS | 25.0% |
| ! | TAATAGAATTGCTTAAGCTT+TGG | - | chr3.3:88232167-88232186 | MS.gene014789:intron | 25.0% |
| ! | TAGTCACTTGTATAAGTATT+TGG | - | chr3.3:88232524-88232543 | MS.gene014789:intron | 25.0% |
| ! | TATAAGATAGATTTACCTTG+GGG | + | chr3.3:88231564-88231583 | None:intergenic | 25.0% |
| ! | TATGACAAGTTAAGAATACA+AGG | + | chr3.3:88231758-88231777 | None:intergenic | 25.0% |
| ! | TATTGCTTGATATTGCTTAT+TGG | - | chr3.3:88232883-88232902 | MS.gene014789:intron | 25.0% |
| ! | TTGATTGATTGCTAAATATC+CGG | - | chr3.3:88233999-88234018 | MS.gene014789:CDS | 25.0% |
| ! | TTTATGGAACTTAAAATTCC+GGG | + | chr3.3:88231446-88231465 | None:intergenic | 25.0% |
| !! | AGAAGACAAGAATTTTCATA+TGG | + | chr3.3:88233931-88233950 | None:intergenic | 25.0% |
| !! | TTGATTGAGTTTATGCATTT+TGG | - | chr3.3:88231625-88231644 | MS.gene014789:intron | 25.0% |
| !! | TTTTTAATCAAAATCCAGTG+AGG | - | chr3.3:88232997-88233016 | MS.gene014789:intron | 25.0% |
| AAGAAAAGGATGACACAAAA+AGG | + | chr3.3:88233798-88233817 | None:intergenic | 30.0% | |
| AATATCTGAGAACTAGAAGA+TGG | + | chr3.3:88231209-88231228 | None:intergenic | 30.0% | |
| ACAAGTTAAGAATACAAGGT+TGG | + | chr3.3:88231754-88231773 | None:intergenic | 30.0% | |
| AGTTGTCCGATATCATATTA+AGG | + | chr3.3:88233692-88233711 | None:intergenic | 30.0% | |
| ATAAGATAGATTTACCTTGG+GGG | + | chr3.3:88231563-88231582 | None:intergenic | 30.0% | |
| ATTGATCAATCAATGCCTTT+GGG | - | chr3.3:88233065-88233084 | MS.gene014789:intron | 30.0% | |
| CATTGCATTTAAGCTACATT+TGG | - | chr3.3:88232472-88232491 | MS.gene014789:intron | 30.0% | |
| CTAAGATTGATGCGAATAAA+TGG | - | chr3.3:88231246-88231265 | MS.gene014789:CDS | 30.0% | |
| CTATCATGAGGATTACTATT+AGG | + | chr3.3:88232604-88232623 | None:intergenic | 30.0% | |
| GACGTAAAAATTAACTGACT+TGG | - | chr3.3:88232311-88232330 | MS.gene014789:intron | 30.0% | |
| GCATACTACATAGTTTGATT+TGG | - | chr3.3:88233567-88233586 | MS.gene014789:intron | 30.0% | |
| GGAATATTCTGATTTCTAAG+TGG | - | chr3.3:88232759-88232778 | MS.gene014789:intron | 30.0% | |
| GTATTATCATACCTCCAAAT+TGG | - | chr3.3:88233606-88233625 | MS.gene014789:CDS | 30.0% | |
| GTTGTCCGATATCATATTAA+GGG | + | chr3.3:88233691-88233710 | None:intergenic | 30.0% | |
| TAGTCACTTGTATAAGTACT+TGG | - | chr3.3:88232550-88232569 | MS.gene014789:intron | 30.0% | |
| TCTTTCAATCACTACCAATT+TGG | + | chr3.3:88233623-88233642 | None:intergenic | 30.0% | |
| TTATGGAACTTAAAATTCCG+GGG | + | chr3.3:88231445-88231464 | None:intergenic | 30.0% | |
| TTCACAGTTGAAGTGATTAA+TGG | + | chr3.3:88232804-88232823 | None:intergenic | 30.0% | |
| TTGTCCGATATCATATTAAG+GGG | + | chr3.3:88233690-88233709 | None:intergenic | 30.0% | |
| ! | AGACACATATAGTTTGTCTT+GGG | - | chr3.3:88233204-88233223 | MS.gene014789:intron | 30.0% |
| ! | ATAGTGGAGAAAATGAAACA+GGG | - | chr3.3:88233427-88233446 | MS.gene014789:intron | 30.0% |
| ! | ATTGCAGTTTCTACATCTTT+TGG | - | chr3.3:88232074-88232093 | MS.gene014789:intron | 30.0% |
| ! | CAAATCCATCAAGAATTTTG+AGG | - | chr3.3:88232286-88232305 | MS.gene014789:intron | 30.0% |
| ! | CATCCTTTTCTTTACTTTAC+TGG | - | chr3.3:88233806-88233825 | MS.gene014789:CDS | 30.0% |
| ! | GGATTGTTGAAAGCTAATTT+TGG | + | chr3.3:88233729-88233748 | None:intergenic | 30.0% |
| ! | TAAGTATCAACACCGTATTT+TGG | + | chr3.3:88231948-88231967 | None:intergenic | 30.0% |
| ! | TATCTGTTTACTGCATTTTG+TGG | - | chr3.3:88231776-88231795 | MS.gene014789:CDS | 30.0% |
| ! | TATTTTCACTACTGTAAGAG+TGG | + | chr3.3:88232684-88232703 | None:intergenic | 30.0% |
| ! | TTAGGGCAAACTCATTTTAA+AGG | - | chr3.3:88233121-88233140 | MS.gene014789:intron | 30.0% |
| !! | AGAAAATATTCGAGTTGGTA+CGG | + | chr3.3:88233887-88233906 | None:intergenic | 30.0% |
| !! | ATGTTATAATGGCTTTAGCT+GGG | - | chr3.3:88233331-88233350 | MS.gene014789:intron | 30.0% |
| !! | TTTCTGTCTAGTTCTTGTAA+TGG | - | chr3.3:88233168-88233187 | MS.gene014789:intron | 30.0% |
| ACAATTTAACTGATCCTCAC+TGG | + | chr3.3:88233014-88233033 | None:intergenic | 35.0% | |
| ACATGTATACCCAAGACAAT+AGG | - | chr3.3:88232730-88232749 | MS.gene014789:intron | 35.0% | |
| AGGCCAGTAAAGTAAAGAAA+AGG | + | chr3.3:88233812-88233831 | None:intergenic | 35.0% | |
| ATCAGATTTCTGCCGAAATA+TGG | - | chr3.3:88232014-88232033 | MS.gene014789:intron | 35.0% | |
| ATTCGCATCAATCTTAGTGT+TGG | + | chr3.3:88231243-88231262 | None:intergenic | 35.0% | |
| ATTGCTAAATATCCGGTTGT+AGG | - | chr3.3:88234006-88234025 | MS.gene014789:CDS | 35.0% | |
| CAAACTATGTAGTATGCTTG+AGG | + | chr3.3:88233564-88233583 | None:intergenic | 35.0% | |
| CAATACATCTCGCATTTCAA+AGG | + | chr3.3:88232868-88232887 | None:intergenic | 35.0% | |
| CACAGATCCAAACTAATTTC+AGG | + | chr3.3:88231809-88231828 | None:intergenic | 35.0% | |
| CACATCTATAAGCTATCATG+AGG | + | chr3.3:88232616-88232635 | None:intergenic | 35.0% | |
| CATAAAAGATAGTCATCTGG+CGG | + | chr3.3:88231688-88231707 | None:intergenic | 35.0% | |
| CATGTATACCCAAGACAATA+GGG | - | chr3.3:88232731-88232750 | MS.gene014789:intron | 35.0% | |
| CATTGATCAATCAATGCCTT+TGG | - | chr3.3:88233064-88233083 | MS.gene014789:intron | 35.0% | |
| CCATCTCAATAAAACGAGAA+AGG | - | chr3.3:88232828-88232847 | MS.gene014789:intron | 35.0% | |
| CTCCATAAAAGATAGTCATC+TGG | + | chr3.3:88231691-88231710 | None:intergenic | 35.0% | |
| CTTCACAAACTCATAACAGA+AGG | - | chr3.3:88233235-88233254 | MS.gene014789:intron | 35.0% | |
| GTTTGATGCAAAATGCTAGA+AGG | + | chr3.3:88232265-88232284 | None:intergenic | 35.0% | |
| TAAAGATACCAGAAATCCGA+CGG | - | chr3.3:88234053-88234072 | MS.gene014789:CDS | 35.0% | |
| TAGAAACTGCAATATGAGTG+TGG | + | chr3.3:88232067-88232086 | None:intergenic | 35.0% | |
| TATGCAGGCTGATGTTATAA+TGG | - | chr3.3:88233320-88233339 | MS.gene014789:intron | 35.0% | |
| TCAAGTCTAAAAGTAACGCT+CGG | + | chr3.3:88232937-88232956 | None:intergenic | 35.0% | |
| TGAGTATCAACGCCATATTT+CGG | + | chr3.3:88232029-88232048 | None:intergenic | 35.0% | |
| TTCAATCACTACCAATTTGG+AGG | + | chr3.3:88233620-88233639 | None:intergenic | 35.0% | |
| TTGATGCGAATAAATGGGAA+CGG | - | chr3.3:88231252-88231271 | MS.gene014789:CDS | 35.0% | |
| TTGCTAAATATCCGGTTGTA+GGG | - | chr3.3:88234007-88234026 | MS.gene014789:CDS | 35.0% | |
| TTGGATCTGTGAATCATCAT+GGG | - | chr3.3:88231818-88231837 | MS.gene014789:CDS | 35.0% | |
| TTTGGATCTGTGAATCATCA+TGG | - | chr3.3:88231817-88231836 | MS.gene014789:CDS | 35.0% | |
| ! | AAAACAGTCTTTTCTCTTGC+CGG | - | chr3.3:88232213-88232232 | MS.gene014789:intron | 35.0% |
| ! | AACGATAGTAACTTGCATAG+TGG | - | chr3.3:88233411-88233430 | MS.gene014789:intron | 35.0% |
| ! | AACTAGCTTCAAACAAGCTT+AGG | - | chr3.3:88231348-88231367 | MS.gene014789:intron | 35.0% |
| ! | ACAAAAAGGATCAGTGGATT+TGG | + | chr3.3:88233784-88233803 | None:intergenic | 35.0% |
| ! | ACTAGCTTCAAACAAGCTTA+GGG | - | chr3.3:88231349-88231368 | MS.gene014789:intron | 35.0% |
| ! | CAGATGACTATCTTTTATGG+AGG | - | chr3.3:88231689-88231708 | MS.gene014789:intron | 35.0% |
| ! | CATAGTGGAGAAAATGAAAC+AGG | - | chr3.3:88233426-88233445 | MS.gene014789:intron | 35.0% |
| ! | GAGACACATATAGTTTGTCT+TGG | - | chr3.3:88233203-88233222 | MS.gene014789:intron | 35.0% |
| ! | TAAGCTTGTTTGAAGCTAGT+TGG | + | chr3.3:88231349-88231368 | None:intergenic | 35.0% |
| ! | TTCTAAATTCCGACTTGAGT+TGG | - | chr3.3:88233038-88233057 | MS.gene014789:intron | 35.0% |
| ! | TTGGTAGTCATTGCACAATA+TGG | - | chr3.3:88232093-88232112 | MS.gene014789:intron | 35.0% |
| !! | ATCCATCAAGAATTTTGAGG+CGG | - | chr3.3:88232289-88232308 | MS.gene014789:intron | 35.0% |
| !! | CCTTTCTCGTTTTATTGAGA+TGG | + | chr3.3:88232831-88232850 | None:intergenic | 35.0% |
| !! | GAAAATATTCGAGTTGGTAC+GGG | + | chr3.3:88233886-88233905 | None:intergenic | 35.0% |
| !! | GATGTTATAATGGCTTTAGC+TGG | - | chr3.3:88233330-88233349 | MS.gene014789:intron | 35.0% |
| AAGCTTAGGGATACCATTTC+AGG | - | chr3.3:88231362-88231381 | MS.gene014789:intron | 40.0% | |
| ACCAAAATCTACTGCAAAGC+TGG | - | chr3.3:88233386-88233405 | MS.gene014789:intron | 40.0% | |
| ACTACTGCAGACGATATGTT+TGG | + | chr3.3:88233663-88233682 | None:intergenic | 40.0% | |
| ACTACTGTAAGAGTGGAGTT+TGG | + | chr3.3:88232677-88232696 | None:intergenic | 40.0% | |
| ACTGCAATATGAGTGTGGTA+CGG | + | chr3.3:88232062-88232081 | None:intergenic | 40.0% | |
| CAGGCTGAGAGATAAATGAA+GGG | + | chr3.3:88231388-88231407 | None:intergenic | 40.0% | |
| CCTGAAATCTTAACCAAGCA+GGG | - | chr3.3:88232437-88232456 | MS.gene014789:intron | 40.0% | |
| CCTGCTTGGTTAAGATTTCA+GGG | + | chr3.3:88232439-88232458 | None:intergenic | 40.0% | |
| CTACTGCAGACGATATGTTT+GGG | + | chr3.3:88233662-88233681 | None:intergenic | 40.0% | |
| CTACTGTAAGAGTGGAGTTT+GGG | + | chr3.3:88232676-88232695 | None:intergenic | 40.0% | |
| GATAAATGAAGGGCCTGAAA+TGG | + | chr3.3:88231378-88231397 | None:intergenic | 40.0% | |
| GATGACACAAAAAGGATCAG+TGG | + | chr3.3:88233790-88233809 | None:intergenic | 40.0% | |
| GCTGAATGAGAATCAAAGAG+GGG | + | chr3.3:88232654-88232673 | None:intergenic | 40.0% | |
| GGCTGAATGAGAATCAAAGA+GGG | + | chr3.3:88232655-88232674 | None:intergenic | 40.0% | |
| GTAGTATGCTTGAGGATTAC+CGG | + | chr3.3:88233556-88233575 | None:intergenic | 40.0% | |
| GTAGTCATTGCACAATATGG+TGG | - | chr3.3:88232096-88232115 | MS.gene014789:intron | 40.0% | |
| GTCTGTGGTTTATTCGTGAT+TGG | - | chr3.3:88231867-88231886 | MS.gene014789:CDS | 40.0% | |
| TACAAGGTTGGACCTTATGT+TGG | + | chr3.3:88231742-88231761 | None:intergenic | 40.0% | |
| TACTGCAGACGATATGTTTG+GGG | + | chr3.3:88233661-88233680 | None:intergenic | 40.0% | |
| TCAATGTAGCCAACTCAAGT+CGG | + | chr3.3:88233050-88233069 | None:intergenic | 40.0% | |
| TCATATGCACTCTCAACGAA+AGG | + | chr3.3:88232391-88232410 | None:intergenic | 40.0% | |
| TCCTTAAAAAACTCGGTCTG+TGG | - | chr3.3:88231852-88231871 | MS.gene014789:CDS | 40.0% | |
| TGCTAAATATCCGGTTGTAG+GGG | - | chr3.3:88234008-88234027 | MS.gene014789:CDS | 40.0% | |
| TTCTGATTTCTAAGTGGGGT+AGG | - | chr3.3:88232765-88232784 | MS.gene014789:intron | 40.0% | |
| ! | AACAGGGTTAGTGAGTAATG+TGG | - | chr3.3:88233443-88233462 | MS.gene014789:intron | 40.0% |
| ! | ACCAGCTTTGCAGTAGATTT+TGG | + | chr3.3:88233390-88233409 | None:intergenic | 40.0% |
| ! | CGCCAGATGACTATCTTTTA+TGG | - | chr3.3:88231686-88231705 | MS.gene014789:intron | 40.0% |
| ! | GGATCTAGAACTGGAATCAA+AGG | - | chr3.3:88231419-88231438 | MS.gene014789:intron | 40.0% |
| ! | TGATGATGTCCACCAACATA+AGG | - | chr3.3:88231727-88231746 | MS.gene014789:intron | 40.0% |
| !! | AGTTCTAGATCCTTCATCAG+CGG | + | chr3.3:88231411-88231430 | None:intergenic | 40.0% |
| !! | GCATCAATCTTAGTGTTGGT+GGG | + | chr3.3:88231239-88231258 | None:intergenic | 40.0% |
| !! | TTAAGCTTTGGGTACACTGA+TGG | - | chr3.3:88232179-88232198 | MS.gene014789:intron | 40.0% |
| !!! | ACCACAGACCGAGTTTTTTA+AGG | + | chr3.3:88231856-88231875 | None:intergenic | 40.0% |
| !!! | TGGTTTTTGGTAAAGCCCAA+AGG | + | chr3.3:88233083-88233102 | None:intergenic | 40.0% |
| AACTTCCCATGAAGCTCTTG+TGG | + | chr3.3:88233474-88233493 | None:intergenic | 45.0% | |
| AAGGTTGGACCTTATGTTGG+TGG | + | chr3.3:88231739-88231758 | None:intergenic | 45.0% | |
| ACTTCCCATGAAGCTCTTGT+GGG | + | chr3.3:88233473-88233492 | None:intergenic | 45.0% | |
| AGCAGTAGCAGCTGTGTTTA+TGG | + | chr3.3:88231462-88231481 | None:intergenic | 45.0% | |
| CATTCCCACAAGAGCTTCAT+GGG | - | chr3.3:88233466-88233485 | MS.gene014789:intron | 45.0% | |
| CCCTGAAATCTTAACCAAGC+AGG | - | chr3.3:88232436-88232455 | MS.gene014789:intron | 45.0% | |
| CCCTGCTTGGTTAAGATTTC+AGG | + | chr3.3:88232440-88232459 | None:intergenic | 45.0% | |
| CGGTCTATTCTCATGAATGC+TGG | - | chr3.3:88231272-88231291 | MS.gene014789:CDS | 45.0% | |
| GCAGGCTGAGAGATAAATGA+AGG | + | chr3.3:88231389-88231408 | None:intergenic | 45.0% | |
| GGAGTAGATACACGATCAAC+AGG | + | chr3.3:88233531-88233550 | None:intergenic | 45.0% | |
| GGGCTGAATGAGAATCAAAG+AGG | + | chr3.3:88232656-88232675 | None:intergenic | 45.0% | |
| GTATTGAGCAGCAGTCAACA+TGG | - | chr3.3:88231647-88231666 | MS.gene014789:intron | 45.0% | |
| GTCCGCCTCAAAATTCTTGA+TGG | + | chr3.3:88232294-88232313 | None:intergenic | 45.0% | |
| TACACGATCAACAGGTCCAA+CGG | + | chr3.3:88233523-88233542 | None:intergenic | 45.0% | |
| TTATAGATGTGAAGCCTGCC+CGG | - | chr3.3:88232625-88232644 | MS.gene014789:intron | 45.0% | |
| ! | ATTTCATCTGCAGTGCTGCT+CGG | - | chr3.3:88231491-88231510 | MS.gene014789:intron | 45.0% |
| ! | CATGACTTTTGCACGCTCTT+TGG | - | chr3.3:88233295-88233314 | MS.gene014789:intron | 45.0% |
| ! | CGCATCAATCTTAGTGTTGG+TGG | + | chr3.3:88231240-88231259 | None:intergenic | 45.0% |
| ! | GAAGCTAGTTGGTGTGCAAA+AGG | + | chr3.3:88231338-88231357 | None:intergenic | 45.0% |
| ! | GCTCTTTTGTCTTCGGAACT+GGG | + | chr3.3:88234093-88234112 | None:intergenic | 45.0% |
| ! | GCTGATGAAGGATCTAGAAC+TGG | - | chr3.3:88231410-88231429 | MS.gene014789:intron | 45.0% |
| ! | TCACTGCGCTCTTTTGTCTT+CGG | + | chr3.3:88234100-88234119 | None:intergenic | 45.0% |
| !! | ATGGCTTTAGCTGGGTCAAA+TGG | - | chr3.3:88233339-88233358 | MS.gene014789:intron | 45.0% |
| !! | TCAATCTTAGTGTTGGTGGG+TGG | + | chr3.3:88231236-88231255 | None:intergenic | 45.0% |
| AAAGATAGTCATCTGGCGGC+TGG | + | chr3.3:88231684-88231703 | None:intergenic | 50.0% | |
| ACCCAAGACAATAGGGTGCA+GGG | - | chr3.3:88232738-88232757 | MS.gene014789:intron | 50.0% | |
| AGAACTGGAATCAAAGGCCC+CGG | - | chr3.3:88231425-88231444 | MS.gene014789:intron | 50.0% | |
| AGAATCAAAGAGGGGACTCC+GGG | + | chr3.3:88232646-88232665 | None:intergenic | 50.0% | |
| ATAGATTTACCTTGGGGGCG+TGG | + | chr3.3:88231558-88231577 | None:intergenic | 50.0% | |
| CATGGGAAGTTGTCTGCTAC+TGG | - | chr3.3:88233483-88233502 | MS.gene014789:intron | 50.0% | |
| GAGAATCAAAGAGGGGACTC+CGG | + | chr3.3:88232647-88232666 | None:intergenic | 50.0% | |
| GATCGTGTATCTACTCCAGC+CGG | - | chr3.3:88233534-88233553 | MS.gene014789:intron | 50.0% | |
| GCATTCCCACAAGAGCTTCA+TGG | - | chr3.3:88233465-88233484 | MS.gene014789:intron | 50.0% | |
| GCTTTAGCTGGGTCAAATGG+TGG | - | chr3.3:88233342-88233361 | MS.gene014789:intron | 50.0% | |
| GTGGGGTAGGAAAACTGTAG+TGG | - | chr3.3:88232778-88232797 | MS.gene014789:intron | 50.0% | |
| GTTAGACATGCACTCCCTGA+AGG | - | chr3.3:88232353-88232372 | MS.gene014789:intron | 50.0% | |
| TACCCAAGACAATAGGGTGC+AGG | - | chr3.3:88232737-88232756 | MS.gene014789:intron | 50.0% | |
| TATGCTTGAGGATTACCGGC+TGG | + | chr3.3:88233552-88233571 | None:intergenic | 50.0% | |
| TCCCTGCACCCTATTGTCTT+GGG | + | chr3.3:88232742-88232761 | None:intergenic | 50.0% | |
| TGCTTGAACCGTCGGATTTC+TGG | + | chr3.3:88234064-88234083 | None:intergenic | 50.0% | |
| TTCCCTGCACCCTATTGTCT+TGG | + | chr3.3:88232743-88232762 | None:intergenic | 50.0% | |
| TTGGTACGGGCAAGGTCTAA+AGG | + | chr3.3:88233873-88233892 | None:intergenic | 50.0% | |
| ! | CGCGCAGTTTTCGATCTCAA+CGG | + | chr3.3:88233750-88233769 | None:intergenic | 50.0% |
| ! | CGCTCTTTTGTCTTCGGAAC+TGG | + | chr3.3:88234094-88234113 | None:intergenic | 50.0% |
| !! | CTGGGTCAAATGGTGGATCT+TGG | - | chr3.3:88233349-88233368 | MS.gene014789:intron | 50.0% |
| !! | TATTCGAGTTGGTACGGGCA+AGG | + | chr3.3:88233881-88233900 | None:intergenic | 50.0% |
| AGGAGCTCTGTTGCTCCTTC+AGG | + | chr3.3:88232371-88232390 | None:intergenic | 55.0% | |
| CTAGATCCTTCATCAGCGGC+AGG | + | chr3.3:88231407-88231426 | None:intergenic | 55.0% | |
| GATCAACAGGTCCAACGGCA+CGG | + | chr3.3:88233518-88233537 | None:intergenic | 55.0% | |
| GGAGCTCTGTTGCTCCTTCA+GGG | + | chr3.3:88232370-88232389 | None:intergenic | 55.0% | |
| TAGAATCATCCACGCCCCCA+AGG | - | chr3.3:88231546-88231565 | MS.gene014789:intron | 55.0% | |
| ! | GCACGCTCTTTGGTGTATGC+AGG | - | chr3.3:88233305-88233324 | MS.gene014789:intron | 55.0% |
| ! | GGATCTGCTGCTTGAACCGT+CGG | + | chr3.3:88234072-88234091 | None:intergenic | 55.0% |
| ATAGTCATCTGGCGGCTGGC+AGG | + | chr3.3:88231680-88231699 | None:intergenic | 60.0% | |
| CCTTGATGCGCCCCTACAAC+CGG | + | chr3.3:88234021-88234040 | None:intergenic | 60.0% | |
| GCGGAGGATGCTGCATGGAA+GGG | + | chr3.3:88231298-88231317 | None:intergenic | 60.0% | |
| GGAGTCAACTGTCCTGCACG+CGG | + | chr3.3:88231317-88231336 | None:intergenic | 60.0% | |
| TCTCAGCCTGCCGCTGATGA+AGG | - | chr3.3:88231398-88231417 | MS.gene014789:intron | 60.0% | |
| ! | TCATCTGCAGTGCTGCTCGG+TGG | - | chr3.3:88231494-88231513 | MS.gene014789:intron | 60.0% |
| ATGCAGCATCCTCCGCGTGC+AGG | - | chr3.3:88231302-88231321 | MS.gene014789:intron | 65.0% | |
| CGCGGAGGATGCTGCATGGA+AGG | + | chr3.3:88231299-88231318 | None:intergenic | 65.0% | |
| GCTCGAGTCGAGACCCTGCT+TGG | + | chr3.3:88232453-88232472 | None:intergenic | 65.0% | |
| GTCAACTGTCCTGCACGCGG+AGG | + | chr3.3:88231314-88231333 | None:intergenic | 65.0% | |
| TCAAAGAGGGGACTCCGGGC+AGG | + | chr3.3:88232642-88232661 | None:intergenic | 65.0% | |
| TGCACGCGGAGGATGCTGCA+TGG | + | chr3.3:88231303-88231322 | None:intergenic | 65.0% | |
| ! | CCGGTTGTAGGGGCGCATCA+AGG | - | chr3.3:88234018-88234037 | MS.gene014789:CDS | 65.0% |
| ! | GGCAGTTCTAGCCGTGCCGT+TGG | - | chr3.3:88233504-88233523 | MS.gene014789:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 88231200 | 88234119 | 88231200 | ID=MS.gene014789 |
| chr3.3 | mRNA | 88231200 | 88234119 | 88231200 | ID=MS.gene014789.t1;Parent=MS.gene014789 |
| chr3.3 | exon | 88233752 | 88234119 | 88233752 | ID=MS.gene014789.t1.exon1;Parent=MS.gene014789.t1 |
| chr3.3 | CDS | 88233752 | 88234119 | 88233752 | ID=cds.MS.gene014789.t1;Parent=MS.gene014789.t1 |
| chr3.3 | exon | 88233571 | 88233661 | 88233571 | ID=MS.gene014789.t1.exon2;Parent=MS.gene014789.t1 |
| chr3.3 | CDS | 88233571 | 88233661 | 88233571 | ID=cds.MS.gene014789.t1;Parent=MS.gene014789.t1 |
| chr3.3 | exon | 88231764 | 88231992 | 88231764 | ID=MS.gene014789.t1.exon3;Parent=MS.gene014789.t1 |
| chr3.3 | CDS | 88231764 | 88231992 | 88231764 | ID=cds.MS.gene014789.t1;Parent=MS.gene014789.t1 |
| chr3.3 | exon | 88231200 | 88231291 | 88231200 | ID=MS.gene014789.t1.exon4;Parent=MS.gene014789.t1 |
| chr3.3 | CDS | 88231200 | 88231291 | 88231200 | ID=cds.MS.gene014789.t1;Parent=MS.gene014789.t1 |
| Gene Sequence |
| Protein sequence |
