Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014819.t1 | XP_003603420.1 | 97 | 330 | 5 | 1 | 1 | 325 | 1 | 330 | 2.30E-127 | 465.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014819.t1 | Q8H0V5 | 58.7 | 167 | 69 | 0 | 152 | 318 | 185 | 351 | 5.9e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014819.t1 | G7JB43 | 97.0 | 330 | 5 | 1 | 1 | 325 | 1 | 330 | 1.7e-127 | 465.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014819.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014819.t1 | MTR_3g107530 | 93.353 | 331 | 15 | 2 | 1 | 325 | 1 | 330 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014819.t1 | AT5G11270 | 48.659 | 261 | 126 | 1 | 66 | 318 | 91 | 351 | 4.02e-67 | 214 |
Find 53 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTCCGGGCGTAGTTTC+AGG | 0.263805 | 3.3:+87940104 | None:intergenic |
| GGTGATACTGCTGATGGTTT+AGG | 0.275225 | 3.3:+87940125 | None:intergenic |
| ATAGGTAAGTTAGACTTCTT+TGG | 0.299284 | 3.3:+87940035 | None:intergenic |
| TTCTCGAAAGAGATTGAAAA+AGG | 0.338696 | 3.3:-87939988 | MS.gene014819:CDS |
| GATCATGCTCATGCAGAATC+TGG | 0.343580 | 3.3:-87940059 | MS.gene014819:CDS |
| TTCCTCTGACTGTGACTAAA+CGG | 0.395790 | 3.3:+87941860 | None:intergenic |
| TTCGCTGCAAAGAAGAGGAT+TGG | 0.420945 | 3.3:+87941836 | None:intergenic |
| GCTGATGGTTTAGGTTCATC+AGG | 0.425177 | 3.3:+87940134 | None:intergenic |
| TTCATGACATGCAACAGAAT+TGG | 0.427701 | 3.3:-87940013 | MS.gene014819:CDS |
| CGCGGAGAACAGTTATTAAG+TGG | 0.452000 | 3.3:-87938945 | MS.gene014819:CDS |
| TCGCTGCAAAGAAGAGGATT+GGG | 0.456309 | 3.3:+87941837 | None:intergenic |
| TTCTGTTGCATGTCATGAAT+AGG | 0.457484 | 3.3:+87940017 | None:intergenic |
| TTGGCTAGAGCATTGAAAAC+TGG | 0.460688 | 3.3:-87941292 | MS.gene014819:CDS |
| TCCTCTGACTGTGACTAAAC+GGG | 0.466238 | 3.3:+87941861 | None:intergenic |
| CGCGAGTTGGAAGGTGTGTT+GGG | 0.475506 | 3.3:-87941439 | MS.gene014819:CDS |
| TCATTAGCAGACTGCTGGTA+AGG | 0.483094 | 3.3:+87938877 | None:intergenic |
| TTGTTTCATTAGCAGACTGC+TGG | 0.483884 | 3.3:+87938872 | None:intergenic |
| AGGCTCAGCATCAGAAGACT+TGG | 0.491448 | 3.3:+87940164 | None:intergenic |
| TGTTTGAAAAGCAACTCAAA+TGG | 0.492775 | 3.3:+87941559 | None:intergenic |
| ATTCGCTGAAGCTTAGAACT+TGG | 0.492933 | 3.3:-87941327 | MS.gene014819:CDS |
| GGCTCAGCATCAGAAGACTT+GGG | 0.499893 | 3.3:+87940165 | None:intergenic |
| AAAGGCTTACACTTAGTTTG+CGG | 0.505407 | 3.3:+87941266 | None:intergenic |
| AGCTCTATCAAGACAGAGCT+CGG | 0.525713 | 3.3:+87940217 | None:intergenic |
| AGAGCGAGAAGGAAGAGTGA+AGG | 0.528288 | 3.3:+87941798 | None:intergenic |
| AGAGTGAAGGAGAAGAGAAG+AGG | 0.540225 | 3.3:+87941811 | None:intergenic |
| AGACAAACGTGCCGAGGAGG+GGG | 0.542683 | 3.3:-87938917 | MS.gene014819:CDS |
| ACGCGAGTTGGAAGGTGTGT+TGG | 0.544033 | 3.3:-87941440 | MS.gene014819:CDS |
| GTTTCAGGTGATACTGCTGA+TGG | 0.555775 | 3.3:+87940119 | None:intergenic |
| TGCTTTGTTAGAACGCGAGT+TGG | 0.559551 | 3.3:-87941452 | MS.gene014819:CDS |
| CGGTGACAATTGAAGAGTAG+AGG | 0.560168 | 3.3:+87941770 | None:intergenic |
| TGGTAAGGAAGACGATGCTC+TGG | 0.560826 | 3.3:+87938892 | None:intergenic |
| TTGTTAGAACGCGAGTTGGA+AGG | 0.564648 | 3.3:-87941448 | MS.gene014819:CDS |
| AAATTGACTCATGTTACAGA+GGG | 0.567201 | 3.3:-87941598 | MS.gene014819:CDS |
| AACTTGGCAATTGAATACAT+TGG | 0.575518 | 3.3:-87941311 | MS.gene014819:CDS |
| TAGGTTCATCAGGAATCGAT+AGG | 0.584575 | 3.3:+87940144 | None:intergenic |
| GTATCACCTGAAACTACGCC+CGG | 0.589871 | 3.3:-87940110 | MS.gene014819:CDS |
| GAAGACAAACGTGCCGAGGA+GGG | 0.595141 | 3.3:-87938919 | MS.gene014819:CDS |
| AAAGGCTCAACTTGACACGC+TGG | 0.611700 | 3.3:-87939970 | MS.gene014819:CDS |
| TGAAGACAAACGTGCCGAGG+AGG | 0.619168 | 3.3:-87938920 | MS.gene014819:CDS |
| AAGACAAACGTGCCGAGGAG+GGG | 0.620622 | 3.3:-87938918 | MS.gene014819:CDS |
| TGCATGTTTCAAACATTCCG+CGG | 0.630435 | 3.3:-87938963 | MS.gene014819:CDS |
| ACCCGTTTAGTCACAGTCAG+AGG | 0.634786 | 3.3:-87941862 | MS.gene014819:CDS |
| GCTCAGCATCAGAAGACTTG+GGG | 0.637229 | 3.3:+87940166 | None:intergenic |
| AAAATTGACTCATGTTACAG+AGG | 0.638213 | 3.3:-87941599 | MS.gene014819:CDS |
| CTCAGCATCAGAAGACTTGG+GGG | 0.646984 | 3.3:+87940167 | None:intergenic |
| GTTTGAAGACAAACGTGCCG+AGG | 0.651860 | 3.3:-87938923 | MS.gene014819:CDS |
| TGATAAACACTGATTCGCGA+CGG | 0.673675 | 3.3:+87941888 | None:intergenic |
| TGTTACAGAGGGGAATGACG+AGG | 0.686418 | 3.3:-87941587 | MS.gene014819:CDS |
| TACAGAGGGGAATGACGAGG+AGG | 0.700089 | 3.3:-87941584 | MS.gene014819:CDS |
| ACAGATATCAGCGAAACACA+AGG | 0.708447 | 3.3:-87941391 | MS.gene014819:CDS |
| CACTTAATAACTGTTCTCCG+CGG | 0.713242 | 3.3:+87938946 | None:intergenic |
| GAGTTTACATGAGATCAAAG+CGG | 0.731573 | 3.3:-87939944 | MS.gene014819:CDS |
| AATTGACTCATGTTACAGAG+GGG | 0.739510 | 3.3:-87941597 | MS.gene014819:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCATAGAATAATAAATT+AGG | + | chr3.3:87939115-87939134 | None:intergenic | 15.0% |
| !! | AATAAAAAAGTTTAAGCAAA+CGG | + | chr3.3:87939908-87939927 | None:intergenic | 15.0% |
| !! | AATTAAACTCAAAACAAATT+AGG | + | chr3.3:87939537-87939556 | None:intergenic | 15.0% |
| !! | AATTTAATAGTGAGATTTAT+TGG | + | chr3.3:87941480-87941499 | None:intergenic | 15.0% |
| !! | CTAAAAATACAAAATTCAAA+AGG | + | chr3.3:87939514-87939533 | None:intergenic | 15.0% |
| !! | TTAATTCATATATACAACAT+TGG | + | chr3.3:87939618-87939637 | None:intergenic | 15.0% |
| !! | ACATTTGATATATTTAGCAT+CGG | - | chr3.3:87941286-87941305 | MS.gene014819:CDS | 20.0% |
| !! | ATAACTAGTAAAATCTTCAT+CGG | - | chr3.3:87940903-87940922 | MS.gene014819:intron | 20.0% |
| !! | ATATATACAACATTGGTATT+TGG | + | chr3.3:87939611-87939630 | None:intergenic | 20.0% |
| !! | TATGAATCATTGAATTGTAT+TGG | + | chr3.3:87939081-87939100 | None:intergenic | 20.0% |
| !! | TTCCAAAAAGAAAAACAATA+AGG | - | chr3.3:87939016-87939035 | MS.gene014819:intron | 20.0% |
| !! | TTCTTTATAAAAAGAATCTC+CGG | + | chr3.3:87940671-87940690 | None:intergenic | 20.0% |
| !! | TTTATATTAAGAATCTCAGA+TGG | - | chr3.3:87940313-87940332 | MS.gene014819:intron | 20.0% |
| !!! | AACCTTATTGTTTTTCTTTT+TGG | + | chr3.3:87939021-87939040 | None:intergenic | 20.0% |
| !!! | AAGATTTTACTAGTTATGTA+TGG | + | chr3.3:87940900-87940919 | None:intergenic | 20.0% |
| ! | AAACTTGTGATATTGAAGTA+TGG | + | chr3.3:87940861-87940880 | None:intergenic | 25.0% |
| ! | AATAGAATATATGCACAAAG+AGG | + | chr3.3:87941594-87941613 | None:intergenic | 25.0% |
| ! | AATGATGTAGAAAAAAGTAG+TGG | - | chr3.3:87939395-87939414 | MS.gene014819:intron | 25.0% |
| ! | AGTTAACAAGTTGTGAAATA+AGG | + | chr3.3:87941716-87941735 | None:intergenic | 25.0% |
| ! | ATGATATGAATAGGATTACT+TGG | - | chr3.3:87939751-87939770 | MS.gene014819:intron | 25.0% |
| ! | TAGTATATTTGCCTTTAATC+AGG | + | chr3.3:87940209-87940228 | None:intergenic | 25.0% |
| ! | TCATTGAATTGTATTGGATT+TGG | + | chr3.3:87939075-87939094 | None:intergenic | 25.0% |
| ! | TCTTTATAAAAAGAATCTCC+GGG | + | chr3.3:87940670-87940689 | None:intergenic | 25.0% |
| ! | TTACTTTGTCAAAAAAACAG+AGG | + | chr3.3:87939682-87939701 | None:intergenic | 25.0% |
| !! | AATTGTATTGGATTTGGAAT+TGG | + | chr3.3:87939069-87939088 | None:intergenic | 25.0% |
| !! | CTAGTTGATATATTAAAGAG+TGG | - | chr3.3:87940226-87940245 | MS.gene014819:CDS | 25.0% |
| !! | CTTCAATATCACAAGTTTTA+TGG | - | chr3.3:87940863-87940882 | MS.gene014819:intron | 25.0% |
| !! | GTGACTTTTTAATCTAATGA+TGG | - | chr3.3:87941514-87941533 | MS.gene014819:CDS | 25.0% |
| !!! | ATTGTTTTTCTTTTTGGAAG+AGG | + | chr3.3:87939015-87939034 | None:intergenic | 25.0% |
| AAATGCAGATCATATCATAC+AGG | + | chr3.3:87939826-87939845 | None:intergenic | 30.0% | |
| AAATGGGGTAAATGTCATAT+AGG | - | chr3.3:87941261-87941280 | MS.gene014819:intron | 30.0% | |
| AACTTGGCAATTGAATACAT+TGG | - | chr3.3:87939448-87939467 | MS.gene014819:intron | 30.0% | |
| AATGCTATAATATGCAGTGA+TGG | + | chr3.3:87941642-87941661 | None:intergenic | 30.0% | |
| AATGGGGTAAATGTCATATA+GGG | - | chr3.3:87941262-87941281 | MS.gene014819:intron | 30.0% | |
| AGTAGTTAGTTAGTTAGTCA+GGG | - | chr3.3:87940046-87940065 | MS.gene014819:CDS | 30.0% | |
| AGTTTCTCAAACATAACTTC+TGG | + | chr3.3:87940997-87941016 | None:intergenic | 30.0% | |
| ATAGGTAAGTTAGACTTCTT+TGG | + | chr3.3:87940727-87940746 | None:intergenic | 30.0% | |
| ATCATACAGGTATTTCATGT+AGG | + | chr3.3:87939813-87939832 | None:intergenic | 30.0% | |
| CCTTATCAATGAATGACAAA+AGG | + | chr3.3:87939983-87940002 | None:intergenic | 30.0% | |
| GTGTATCAGATGATATGAAT+AGG | - | chr3.3:87939742-87939761 | MS.gene014819:intron | 30.0% | |
| TAGTAGTTAGTTAGTTAGTC+AGG | - | chr3.3:87940045-87940064 | MS.gene014819:CDS | 30.0% | |
| TCTTAAACACTTGTCTTGTA+TGG | + | chr3.3:87939857-87939876 | None:intergenic | 30.0% | |
| TGATGCTTGTATTAGTATTC+TGG | - | chr3.3:87941026-87941045 | MS.gene014819:intron | 30.0% | |
| TGTTTGAAAAGCAACTCAAA+TGG | + | chr3.3:87939203-87939222 | None:intergenic | 30.0% | |
| TTAACATGTATTGCAAGTCT+TGG | + | chr3.3:87941182-87941201 | None:intergenic | 30.0% | |
| TTAAGAAACCAAAATGCTTG+TGG | - | chr3.3:87939871-87939890 | MS.gene014819:intron | 30.0% | |
| TTATCTGCAACAAATTCGAA+AGG | + | chr3.3:87940510-87940529 | None:intergenic | 30.0% | |
| TTCTCGAAAGAGATTGAAAA+AGG | - | chr3.3:87940771-87940790 | MS.gene014819:intron | 30.0% | |
| ! | AAAATTGACTCATGTTACAG+AGG | - | chr3.3:87939160-87939179 | MS.gene014819:intron | 30.0% |
| ! | AAATTGACTCATGTTACAGA+GGG | - | chr3.3:87939161-87939180 | MS.gene014819:intron | 30.0% |
| ! | ATACATCCAAGTTGAAGTTA+AGG | + | chr3.3:87940283-87940302 | None:intergenic | 30.0% |
| ! | CCTTTTGTCATTCATTGATA+AGG | - | chr3.3:87939980-87939999 | MS.gene014819:CDS | 30.0% |
| !! | AACATAACTTCTGGTTTAAG+AGG | + | chr3.3:87940988-87941007 | None:intergenic | 30.0% |
| !! | ACATAACTTCTGGTTTAAGA+GGG | + | chr3.3:87940987-87941006 | None:intergenic | 30.0% |
| !! | AGTGAGATTTATTGGTTCAA+TGG | + | chr3.3:87941472-87941491 | None:intergenic | 30.0% |
| !!! | TTACTTTTTCTTGTCCCTAA+AGG | + | chr3.3:87940160-87940179 | None:intergenic | 30.0% |
| ACCTTATATGCTTCTTTGTG+CGG | - | chr3.3:87941389-87941408 | MS.gene014819:CDS | 35.0% | |
| AGCATACATGATGATACAAC+TGG | + | chr3.3:87941076-87941095 | None:intergenic | 35.0% | |
| ATGGGGTAAATGTCATATAG+GGG | - | chr3.3:87941263-87941282 | MS.gene014819:intron | 35.0% | |
| CAAACACCTTAACTTCAACT+TGG | - | chr3.3:87940274-87940293 | MS.gene014819:intron | 35.0% | |
| CAATCCCTAATGTTAACTTC+TGG | - | chr3.3:87940466-87940485 | MS.gene014819:intron | 35.0% | |
| GAGTCCAGAAGTTAACATTA+GGG | + | chr3.3:87940473-87940492 | None:intergenic | 35.0% | |
| GAGTTTACATGAGATCAAAG+CGG | - | chr3.3:87940815-87940834 | MS.gene014819:intron | 35.0% | |
| GCATACATGATGATACAACT+GGG | + | chr3.3:87941075-87941094 | None:intergenic | 35.0% | |
| GGTGTTTGCAAGCAAATTAA+CGG | + | chr3.3:87940262-87940281 | None:intergenic | 35.0% | |
| GTCATTCATTGATAAGGAGA+AGG | - | chr3.3:87939986-87940005 | MS.gene014819:CDS | 35.0% | |
| GTTCATGTGATAAAGAGAGA+AGG | - | chr3.3:87940379-87940398 | MS.gene014819:intron | 35.0% | |
| TCAAGCTAAGTGTCATATAG+TGG | - | chr3.3:87941225-87941244 | MS.gene014819:intron | 35.0% | |
| TCATCTGATACACTTAGTTG+TGG | + | chr3.3:87939735-87939754 | None:intergenic | 35.0% | |
| TGAGTCCAGAAGTTAACATT+AGG | + | chr3.3:87940474-87940493 | None:intergenic | 35.0% | |
| TGGACGACTTGAAACTAAAT+GGG | - | chr3.3:87941245-87941264 | MS.gene014819:intron | 35.0% | |
| TTCATGACATGCAACAGAAT+TGG | - | chr3.3:87940746-87940765 | MS.gene014819:intron | 35.0% | |
| TTCTGTTGCATGTCATGAAT+AGG | + | chr3.3:87940745-87940764 | None:intergenic | 35.0% | |
| ! | AAAGGCTTACACTTAGTTTG+CGG | + | chr3.3:87939496-87939515 | None:intergenic | 35.0% |
| ! | AATTGACTCATGTTACAGAG+GGG | - | chr3.3:87939162-87939181 | MS.gene014819:intron | 35.0% |
| ! | ACTATATGACACTTAGCTTG+AGG | + | chr3.3:87941226-87941245 | None:intergenic | 35.0% |
| ! | ACTGTTTTCCACAAGCATTT+TGG | + | chr3.3:87939882-87939901 | None:intergenic | 35.0% |
| ! | ATGGCAAGTTTAACTTACAG+TGG | + | chr3.3:87940842-87940861 | None:intergenic | 35.0% |
| ! | CAAAGAAGCATATAAGGTGA+TGG | + | chr3.3:87941387-87941406 | None:intergenic | 35.0% |
| ! | TACTTGGTTTGAGTATGAAG+AGG | - | chr3.3:87939767-87939786 | MS.gene014819:intron | 35.0% |
| ! | TGGCAAGTTTAACTTACAGT+GGG | + | chr3.3:87940841-87940860 | None:intergenic | 35.0% |
| !! | GAGATTTATTGGTTCAATGG+TGG | + | chr3.3:87941469-87941488 | None:intergenic | 35.0% |
| !! | GTTTTTCTTTTTGGAAGAGG+CGG | + | chr3.3:87939012-87939031 | None:intergenic | 35.0% |
| !! | TACACTCCATTTTTCTAGTC+CGG | - | chr3.3:87940953-87940972 | MS.gene014819:intron | 35.0% |
| AAACAGGAAATGCTAGTAGG+AGG | - | chr3.3:87940070-87940089 | MS.gene014819:CDS | 40.0% | |
| AAAGGAGTAGTGTAGTGGTT+TGG | + | chr3.3:87940142-87940161 | None:intergenic | 40.0% | |
| AAAGTGACAAGCATGTGTCT+TGG | - | chr3.3:87941663-87941682 | MS.gene014819:intron | 40.0% | |
| AACAGGAAATGCTAGTAGGA+GGG | - | chr3.3:87940071-87940090 | MS.gene014819:CDS | 40.0% | |
| AACCACTACACTACTCCTTT+AGG | - | chr3.3:87940142-87940161 | MS.gene014819:CDS | 40.0% | |
| AATGACAAAAGGCCAAGTCA+AGG | + | chr3.3:87939972-87939991 | None:intergenic | 40.0% | |
| ACAGATATCAGCGAAACACA+AGG | - | chr3.3:87939368-87939387 | MS.gene014819:intron | 40.0% | |
| ACCACTACACTACTCCTTTA+GGG | - | chr3.3:87940143-87940162 | MS.gene014819:CDS | 40.0% | |
| ATTCGCTGAAGCTTAGAACT+TGG | - | chr3.3:87939432-87939451 | MS.gene014819:intron | 40.0% | |
| CACTTAATAACTGTTCTCCG+CGG | + | chr3.3:87941816-87941835 | None:intergenic | 40.0% | |
| CATTGTAGTTCAAGACAGAC+AGG | + | chr3.3:87941751-87941770 | None:intergenic | 40.0% | |
| GGAAAACAGGAAATGCTAGT+AGG | - | chr3.3:87940067-87940086 | MS.gene014819:CDS | 40.0% | |
| GGACGACTTGAAACTAAATG+GGG | - | chr3.3:87941246-87941265 | MS.gene014819:intron | 40.0% | |
| GTAAACTTGATAGATCAGCC+AGG | - | chr3.3:87940176-87940195 | MS.gene014819:CDS | 40.0% | |
| GTAGAAAAAAGTAGTGGCGA+TGG | - | chr3.3:87939401-87939420 | MS.gene014819:intron | 40.0% | |
| GTGGACGACTTGAAACTAAA+TGG | - | chr3.3:87941244-87941263 | MS.gene014819:intron | 40.0% | |
| GTTAGTTAGTCAGGGAAAAC+AGG | - | chr3.3:87940054-87940073 | MS.gene014819:CDS | 40.0% | |
| TAGGTTCATCAGGAATCGAT+AGG | + | chr3.3:87940618-87940637 | None:intergenic | 40.0% | |
| TAGTTCAAGACAGACAGGTA+AGG | + | chr3.3:87941746-87941765 | None:intergenic | 40.0% | |
| TCACTTGTGCACCATAGAAT+TGG | + | chr3.3:87941415-87941434 | None:intergenic | 40.0% | |
| TGCATGTTTCAAACATTCCG+CGG | - | chr3.3:87941796-87941815 | MS.gene014819:CDS | 40.0% | |
| TTCCTCTGACTGTGACTAAA+CGG | + | chr3.3:87938902-87938921 | None:intergenic | 40.0% | |
| TTGTTTCATTAGCAGACTGC+TGG | + | chr3.3:87941890-87941909 | None:intergenic | 40.0% | |
| ! | AAGGTGATGGTTGACATTGT+GGG | + | chr3.3:87941374-87941393 | None:intergenic | 40.0% |
| ! | AGTAGTGTAGTGGTTTGGAT+TGG | + | chr3.3:87940137-87940156 | None:intergenic | 40.0% |
| ! | CAAAGAGGCTTTGTCTAACA+TGG | + | chr3.3:87941579-87941598 | None:intergenic | 40.0% |
| ! | TAAGGTGATGGTTGACATTG+TGG | + | chr3.3:87941375-87941394 | None:intergenic | 40.0% |
| !! | ACACCAAAGAAGTTCTAAGC+AGG | + | chr3.3:87940113-87940132 | None:intergenic | 40.0% |
| !! | AGATGGATTTTCCTTGCAAG+GGG | - | chr3.3:87940330-87940349 | MS.gene014819:intron | 40.0% |
| !! | CAGATGGATTTTCCTTGCAA+GGG | - | chr3.3:87940329-87940348 | MS.gene014819:intron | 40.0% |
| !! | TCAGATGGATTTTCCTTGCA+AGG | - | chr3.3:87940328-87940347 | MS.gene014819:intron | 40.0% |
| !! | TCTGATTTGCTTCCTTGACT+TGG | - | chr3.3:87939957-87939976 | MS.gene014819:CDS | 40.0% |
| !! | TGATAAACACTGATTCGCGA+CGG | + | chr3.3:87938874-87938893 | None:intergenic | 40.0% |
| !! | TTGGCTAGAGCATTGAAAAC+TGG | - | chr3.3:87939467-87939486 | MS.gene014819:intron | 40.0% |
| ACTTGATAGATCAGCCAGGT+TGG | - | chr3.3:87940180-87940199 | MS.gene014819:CDS | 45.0% | |
| AGAGTGAAGGAGAAGAGAAG+AGG | + | chr3.3:87938951-87938970 | None:intergenic | 45.0% | |
| AGCTCTATCAAGACAGAGCT+CGG | + | chr3.3:87940545-87940564 | None:intergenic | 45.0% | |
| CCTCCTGCTTAGAACTTCTT+TGG | - | chr3.3:87940107-87940126 | MS.gene014819:CDS | 45.0% | |
| CGCGGAGAACAGTTATTAAG+TGG | - | chr3.3:87941814-87941833 | MS.gene014819:CDS | 45.0% | |
| CGGTGACAATTGAAGAGTAG+AGG | + | chr3.3:87938992-87939011 | None:intergenic | 45.0% | |
| CTTGATAGATCAGCCAGGTT+GGG | - | chr3.3:87940181-87940200 | MS.gene014819:CDS | 45.0% | |
| GATCATGCTCATGCAGAATC+TGG | - | chr3.3:87940700-87940719 | MS.gene014819:intron | 45.0% | |
| GGTGATACTGCTGATGGTTT+AGG | + | chr3.3:87940637-87940656 | None:intergenic | 45.0% | |
| GTTTAAGAGGGAATTGCTGC+CGG | + | chr3.3:87940975-87940994 | None:intergenic | 45.0% | |
| TCATTAGCAGACTGCTGGTA+AGG | + | chr3.3:87941885-87941904 | None:intergenic | 45.0% | |
| TCCCTAAAGGAGTAGTGTAG+TGG | + | chr3.3:87940147-87940166 | None:intergenic | 45.0% | |
| TCCTCTGACTGTGACTAAAC+GGG | + | chr3.3:87938901-87938920 | None:intergenic | 45.0% | |
| TCGCTGCAAAGAAGAGGATT+GGG | + | chr3.3:87938925-87938944 | None:intergenic | 45.0% | |
| TCTTTGTGCGGCCAATTCTA+TGG | - | chr3.3:87941401-87941420 | MS.gene014819:CDS | 45.0% | |
| TTAGGGATTGAGCAGACAAC+TGG | + | chr3.3:87940456-87940475 | None:intergenic | 45.0% | |
| TTCGCTGCAAAGAAGAGGAT+TGG | + | chr3.3:87938926-87938945 | None:intergenic | 45.0% | |
| TTGATAGATCAGCCAGGTTG+GGG | - | chr3.3:87940182-87940201 | MS.gene014819:CDS | 45.0% | |
| ! | AGGTTTTCGCTGCAAAGAAG+AGG | + | chr3.3:87938931-87938950 | None:intergenic | 45.0% |
| ! | GCCGCACAAAGAAGCATATA+AGG | + | chr3.3:87941393-87941412 | None:intergenic | 45.0% |
| ! | GCTGATGGTTTAGGTTCATC+AGG | + | chr3.3:87940628-87940647 | None:intergenic | 45.0% |
| ! | GTTTCAGGTGATACTGCTGA+TGG | + | chr3.3:87940643-87940662 | None:intergenic | 45.0% |
| ! | TGCTTTGTTAGAACGCGAGT+TGG | - | chr3.3:87939307-87939326 | MS.gene014819:intron | 45.0% |
| ! | TTGCTGCCGGACTAGAAAAA+TGG | + | chr3.3:87940962-87940981 | None:intergenic | 45.0% |
| ! | TTGTTAGAACGCGAGTTGGA+AGG | - | chr3.3:87939311-87939330 | MS.gene014819:intron | 45.0% |
| !! | AAGTTCTAAGCAGGAGGTCT+AGG | + | chr3.3:87940104-87940123 | None:intergenic | 45.0% |
| !! | CCAAAGAAGTTCTAAGCAGG+AGG | + | chr3.3:87940110-87940129 | None:intergenic | 45.0% |
| !!! | TAGAGGTTTTGAGAGCGAGA+AGG | + | chr3.3:87938975-87938994 | None:intergenic | 45.0% |
| AAAGGCTCAACTTGACACGC+TGG | - | chr3.3:87940789-87940808 | MS.gene014819:intron | 50.0% | |
| ACCCGTTTAGTCACAGTCAG+AGG | - | chr3.3:87938897-87938916 | MS.gene014819:CDS | 50.0% | |
| AGAGCGAGAAGGAAGAGTGA+AGG | + | chr3.3:87938964-87938983 | None:intergenic | 50.0% | |
| AGGCTCAGCATCAGAAGACT+TGG | + | chr3.3:87940598-87940617 | None:intergenic | 50.0% | |
| ATTGAGCAGACAACTGGCAC+AGG | + | chr3.3:87940450-87940469 | None:intergenic | 50.0% | |
| CTCAGCATCAGAAGACTTGG+GGG | + | chr3.3:87940595-87940614 | None:intergenic | 50.0% | |
| CTTTAATCAGGACCCCAACC+TGG | + | chr3.3:87940197-87940216 | None:intergenic | 50.0% | |
| GCTCAGCATCAGAAGACTTG+GGG | + | chr3.3:87940596-87940615 | None:intergenic | 50.0% | |
| GGCTCAGCATCAGAAGACTT+GGG | + | chr3.3:87940597-87940616 | None:intergenic | 50.0% | |
| GTATCACCTGAAACTACGCC+CGG | - | chr3.3:87940649-87940668 | MS.gene014819:intron | 50.0% | |
| GTGATGGTTGACATTGTGGG+AGG | + | chr3.3:87941371-87941390 | None:intergenic | 50.0% | |
| GTTTGAAGACAAACGTGCCG+AGG | - | chr3.3:87941836-87941855 | MS.gene014819:CDS | 50.0% | |
| TCAAACTTGCACCCCTTGCA+AGG | + | chr3.3:87940344-87940363 | None:intergenic | 50.0% | |
| TGGTAAGGAAGACGATGCTC+TGG | + | chr3.3:87941870-87941889 | None:intergenic | 50.0% | |
| TGTTACAGAGGGGAATGACG+AGG | - | chr3.3:87939172-87939191 | MS.gene014819:intron | 50.0% | |
| ! | CAGGTTGGGGTCCTGATTAA+AGG | - | chr3.3:87940195-87940214 | MS.gene014819:CDS | 50.0% |
| ! | TGCAAGGGGTGCAAGTTTGA+AGG | - | chr3.3:87940344-87940363 | MS.gene014819:intron | 50.0% |
| AAGACAAACGTGCCGAGGAG+GGG | - | chr3.3:87941841-87941860 | MS.gene014819:CDS | 55.0% | |
| AGCATCAGAAGACTTGGGGG+AGG | + | chr3.3:87940592-87940611 | None:intergenic | 55.0% | |
| GAAGACAAACGTGCCGAGGA+GGG | - | chr3.3:87941840-87941859 | MS.gene014819:CDS | 55.0% | |
| GAATCTCCGGGCGTAGTTTC+AGG | + | chr3.3:87940658-87940677 | None:intergenic | 55.0% | |
| GCATCAGAAGACTTGGGGGA+GGG | + | chr3.3:87940591-87940610 | None:intergenic | 55.0% | |
| TACAGAGGGGAATGACGAGG+AGG | - | chr3.3:87939175-87939194 | MS.gene014819:intron | 55.0% | |
| TGAAGACAAACGTGCCGAGG+AGG | - | chr3.3:87941839-87941858 | MS.gene014819:CDS | 55.0% | |
| ! | ACGCGAGTTGGAAGGTGTGT+TGG | - | chr3.3:87939319-87939338 | MS.gene014819:intron | 55.0% |
| ! | CGCGAGTTGGAAGGTGTGTT+GGG | - | chr3.3:87939320-87939339 | MS.gene014819:intron | 55.0% |
| AGACAAACGTGCCGAGGAGG+GGG | - | chr3.3:87941842-87941861 | MS.gene014819:CDS | 60.0% | |
| !! | ATGCTCTGGAACCCCCTCCT+CGG | + | chr3.3:87941856-87941875 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 87938867 | 87941914 | 87938867 | ID=MS.gene014819 |
| chr3.3 | mRNA | 87938867 | 87941914 | 87938867 | ID=MS.gene014819.t1;Parent=MS.gene014819 |
| chr3.3 | exon | 87941744 | 87941914 | 87941744 | ID=MS.gene014819.t1.exon1;Parent=MS.gene014819.t1 |
| chr3.3 | CDS | 87941744 | 87941914 | 87941744 | ID=cds.MS.gene014819.t1;Parent=MS.gene014819.t1 |
| chr3.3 | exon | 87941276 | 87941623 | 87941276 | ID=MS.gene014819.t1.exon2;Parent=MS.gene014819.t1 |
| chr3.3 | CDS | 87941276 | 87941623 | 87941276 | ID=cds.MS.gene014819.t1;Parent=MS.gene014819.t1 |
| chr3.3 | exon | 87939938 | 87940255 | 87939938 | ID=MS.gene014819.t1.exon3;Parent=MS.gene014819.t1 |
| chr3.3 | CDS | 87939938 | 87940255 | 87939938 | ID=cds.MS.gene014819.t1;Parent=MS.gene014819.t1 |
| chr3.3 | exon | 87938867 | 87939007 | 87938867 | ID=MS.gene014819.t1.exon4;Parent=MS.gene014819.t1 |
| chr3.3 | CDS | 87938867 | 87939007 | 87938867 | ID=cds.MS.gene014819.t1;Parent=MS.gene014819.t1 |
| Gene Sequence |
| Protein sequence |
