Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014848.t1 | XP_024630666.1 | 42.3 | 435 | 20 | 3 | 1 | 204 | 1 | 435 | 6.00E-71 | 278.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014848.t1 | Q9SZL8 | 25.9 | 147 | 108 | 1 | 122 | 268 | 423 | 568 | 1.4e-07 | 58.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014848.t1 | A0A151RX65 | 33.2 | 434 | 59 | 3 | 1 | 203 | 1 | 434 | 5.5e-50 | 208.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene014848.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014848.t1 | MTR_8g093100 | 50.893 | 112 | 15 | 3 | 293 | 364 | 109 | 220 | 8.67e-22 | 97.8 |
MS.gene014848.t1 | MTR_4g102720 | 36.242 | 149 | 35 | 3 | 1 | 122 | 1 | 116 | 9.35e-21 | 90.1 |
MS.gene014848.t1 | MTR_7g061980 | 38.053 | 113 | 42 | 3 | 4 | 88 | 7 | 119 | 5.74e-14 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 80 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCAATTCGTTAACCTTCTT+TGG | 0.203652 | 3.3:+87630711 | None:intergenic |
TCTGAACACCATACTTTATA+AGG | 0.212221 | 3.3:+87632566 | None:intergenic |
TTGAAGATGCTTGGGAGTTC+TGG | 0.234863 | 3.3:-87633595 | MS.gene014848:CDS |
GACAACATATGAGTTGTTTC+TGG | 0.253501 | 3.3:+87633328 | None:intergenic |
CTGAAAACCATATCAACTTT+TGG | 0.256089 | 3.3:+87633623 | None:intergenic |
TCGTTAACCTTCTTTGGATT+TGG | 0.267101 | 3.3:+87630717 | None:intergenic |
CCTTGCTTCACAATTTGTTC+TGG | 0.300300 | 3.3:+87633426 | None:intergenic |
TTGGAAGCCAAAAGTTGATA+TGG | 0.315145 | 3.3:-87633630 | MS.gene014848:CDS |
TTGGATTCTTTGTGCTTGTC+TGG | 0.326800 | 3.3:+87633458 | None:intergenic |
ATGAAGAAGACTTTGACATT+AGG | 0.337357 | 3.3:-87632487 | MS.gene014848:CDS |
TGTACAATATAAAGGAGAAA+TGG | 0.347671 | 3.3:-87632522 | MS.gene014848:CDS |
TCACCTTCGTCCGAAGCTTA+TGG | 0.354911 | 3.3:+87630630 | None:intergenic |
ACATCCCTCCTTATAAAGTA+TGG | 0.358569 | 3.3:-87632574 | MS.gene014848:CDS |
TCCAAAGAAGGTTAACGAAT+TGG | 0.358609 | 3.3:-87630712 | MS.gene014848:CDS |
GCTTATGGCGAAATGGATTC+TGG | 0.365727 | 3.3:+87630645 | None:intergenic |
TGAAGAAGACTTTGACATTA+GGG | 0.366463 | 3.3:-87632486 | MS.gene014848:CDS |
TGGATCTTGCGATTGGTAAC+TGG | 0.378144 | 3.3:-87630409 | MS.gene014848:CDS |
ATCCATTTCGCCATAAGCTT+CGG | 0.382244 | 3.3:-87630640 | MS.gene014848:CDS |
TTTGTTCTGGTCTCTAGTCT+TGG | 0.387348 | 3.3:+87633439 | None:intergenic |
GCAAAGAATGTACAATATAA+AGG | 0.392434 | 3.3:-87632530 | MS.gene014848:CDS |
CAGTAGCTTTGAAGATGCTT+GGG | 0.400724 | 3.3:-87633603 | MS.gene014848:CDS |
GATACAAGATGAATGAAGAT+TGG | 0.401677 | 3.3:-87633649 | None:intergenic |
TCAGTAGCTTTGAAGATGCT+TGG | 0.418263 | 3.3:-87633604 | MS.gene014848:CDS |
TAGCTGCGTTTCTACTGATT+CGG | 0.426163 | 3.3:+87630502 | None:intergenic |
GAGAAGAGAGGAAGCAGATT+GGG | 0.427794 | 3.3:-87630598 | MS.gene014848:CDS |
GTACAATATAAAGGAGAAAT+GGG | 0.433816 | 3.3:-87632521 | MS.gene014848:CDS |
GTCCGAAGCTTATGGCGAAA+TGG | 0.438429 | 3.3:+87630638 | None:intergenic |
AAGAACAATTTGAAGATGGT+TGG | 0.449713 | 3.3:-87632597 | MS.gene014848:CDS |
AGGTTTGTTTGCTGCAAAGA+AGG | 0.468354 | 3.3:-87633491 | MS.gene014848:CDS |
GAGGAAGCAGATTGGGCAAA+CGG | 0.470142 | 3.3:-87630591 | MS.gene014848:CDS |
TAGGTTACATCATGTGTATA+TGG | 0.472245 | 3.3:-87630306 | MS.gene014848:CDS |
ACAAATTGTGAAGCAAGGTT+AGG | 0.474466 | 3.3:-87633421 | MS.gene014848:CDS |
CGACATTCCAAATCCAAAGA+AGG | 0.474478 | 3.3:-87630724 | MS.gene014848:CDS |
GCGTTTCTACTGATTCGGTT+TGG | 0.478313 | 3.3:+87630507 | None:intergenic |
AGGCAGAAAGTGTATTGAAC+GGG | 0.480219 | 3.3:-87630544 | MS.gene014848:CDS |
GGAGAAGAGAGGAAGCAGAT+TGG | 0.486424 | 3.3:-87630599 | MS.gene014848:CDS |
TGGGAGTTCTGGAAAACTTA+CGG | 0.491418 | 3.3:-87633584 | MS.gene014848:CDS |
GAATGTGGATGGAAAATTGA+TGG | 0.494783 | 3.3:-87633392 | MS.gene014848:CDS |
TGGAATGTCGGAACCGACCT+TGG | 0.499234 | 3.3:+87630737 | None:intergenic |
ATTGGTAACTGGCATAAGGC+AGG | 0.508005 | 3.3:-87630398 | MS.gene014848:CDS |
GATGAAGAACAATTTGAAGA+TGG | 0.510431 | 3.3:-87632601 | MS.gene014848:CDS |
TGCGATTGGTAACTGGCATA+AGG | 0.510623 | 3.3:-87630402 | MS.gene014848:CDS |
ATTGAAGATGTGTGACAAAG+AGG | 0.511400 | 3.3:-87630357 | MS.gene014848:CDS |
ATTGATTTGTGATCATGCTC+AGG | 0.515519 | 3.3:+87630449 | None:intergenic |
ATCATGTGTATATGGAATTG+AGG | 0.525885 | 3.3:-87630298 | MS.gene014848:CDS |
AATTCGTAATCACGCAGCTA+TGG | 0.529606 | 3.3:-87630429 | MS.gene014848:CDS |
CGATTTCCTTTGTTGTACAC+CGG | 0.540939 | 3.3:+87633249 | None:intergenic |
ATAAGGCAGGGAATATACTT+AGG | 0.544448 | 3.3:-87630385 | MS.gene014848:CDS |
TCGCCATAAGCTTCGGACGA+AGG | 0.544468 | 3.3:-87630633 | MS.gene014848:CDS |
TTAGGACTTAAGAATGTGGA+TGG | 0.548535 | 3.3:-87633403 | MS.gene014848:CDS |
AAGATGTTGTAGAAGAAAAG+CGG | 0.551004 | 3.3:-87632369 | MS.gene014848:intron |
CTTCTTTGGATTTGGAATGT+CGG | 0.557195 | 3.3:+87630725 | None:intergenic |
GCAGCTATGGATCTTGCGAT+TGG | 0.560534 | 3.3:-87630416 | MS.gene014848:CDS |
CGGACGAAGGTGATCTCAAA+CGG | 0.560895 | 3.3:-87630620 | MS.gene014848:CDS |
TTACGACGGATTCGTGAAGA+AGG | 0.564646 | 3.3:-87630564 | MS.gene014848:CDS |
CGAATTGGAATGGTGAAGAG+AGG | 0.564800 | 3.3:-87630697 | MS.gene014848:CDS |
AGCATGACGATGGGAGTAGT+AGG | 0.567232 | 3.3:-87630325 | MS.gene014848:CDS |
GCAAATGTAACTCGTGGTTG+TGG | 0.569974 | 3.3:+87633350 | None:intergenic |
GAACACCATACTTTATAAGG+AGG | 0.576736 | 3.3:+87632569 | None:intergenic |
AATGTCGGAACCGACCTTGG+AGG | 0.577948 | 3.3:+87630740 | None:intergenic |
AGATTTGTGAGCATGACGAT+GGG | 0.578141 | 3.3:-87630334 | MS.gene014848:CDS |
GAGATTTGTGAGCATGACGA+TGG | 0.587335 | 3.3:-87630335 | MS.gene014848:CDS |
GAATTGGAATGGTGAAGAGA+GGG | 0.592912 | 3.3:-87630696 | MS.gene014848:CDS |
AGAAGGTTAACGAATTGGAA+TGG | 0.597123 | 3.3:-87630707 | MS.gene014848:CDS |
GGTATACTGCAGCTTGCAAG+CGG | 0.600401 | 3.3:+87630666 | None:intergenic |
AACACCATACTTTATAAGGA+GGG | 0.603443 | 3.3:+87632570 | None:intergenic |
CCAGAACAAATTGTGAAGCA+AGG | 0.610911 | 3.3:-87633426 | MS.gene014848:CDS |
GAATCAGTAGAAACGCAGCT+AGG | 0.615034 | 3.3:-87630500 | MS.gene014848:CDS |
TTGGTAACTGGCATAAGGCA+GGG | 0.629427 | 3.3:-87630397 | MS.gene014848:CDS |
TGATCTCAAACGGAGAAGAG+AGG | 0.632305 | 3.3:-87630610 | MS.gene014848:CDS |
AAGGCAGAAAGTGTATTGAA+CGG | 0.632991 | 3.3:-87630545 | MS.gene014848:CDS |
ATTGAACTAGCTGATAGTGC+CGG | 0.644559 | 3.3:-87633268 | MS.gene014848:CDS |
GGTTGTGCAAACAACCTCCA+AGG | 0.645836 | 3.3:-87630754 | MS.gene014848:CDS |
GTGCAAACAACCTCCAAGGT+CGG | 0.652491 | 3.3:-87630750 | MS.gene014848:CDS |
ATAGTGCCGGTGTACAACAA+AGG | 0.660446 | 3.3:-87633255 | MS.gene014848:CDS |
GCAGGGAATATACTTAGGAG+AGG | 0.661002 | 3.3:-87630380 | MS.gene014848:CDS |
TTTCTGGCAAATGTAACTCG+TGG | 0.662245 | 3.3:+87633344 | None:intergenic |
AAGGTTAGGACTTAAGAATG+TGG | 0.679784 | 3.3:-87633407 | MS.gene014848:CDS |
GGGCAAACGGTAGCTTACGA+CGG | 0.698149 | 3.3:-87630578 | MS.gene014848:CDS |
GAGTTCTGGAAAACTTACGG+TGG | 0.762461 | 3.3:-87633581 | MS.gene014848:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTAAAAATTTTATGAGTA+AGG | - | chr3.3:87631484-87631503 | MS.gene014848:intron | 10.0% |
!!! | AGAATTGAATTAGTATTTTT+AGG | + | chr3.3:87631822-87631841 | None:intergenic | 15.0% |
!!! | ATTTTAAAGTGGATTTTTAA+CGG | + | chr3.3:87632343-87632362 | None:intergenic | 15.0% |
!!! | CAATTTTTAGAATTTAAACA+AGG | + | chr3.3:87632285-87632304 | None:intergenic | 15.0% |
!! | AAAAAAAAGAGAAAGAAGTT+TGG | - | chr3.3:87630761-87630780 | MS.gene014848:intron | 20.0% |
!! | AATTGAGAGAGAAAATAATT+AGG | + | chr3.3:87632747-87632766 | None:intergenic | 20.0% |
!! | ACTTATTCAAACTATTTGAA+AGG | + | chr3.3:87632158-87632177 | None:intergenic | 20.0% |
!!! | ACTGAAAGAAATTTTATCAT+GGG | + | chr3.3:87632114-87632133 | None:intergenic | 20.0% |
!!! | ATTGTTTGAGTCTTTTAAAT+TGG | - | chr3.3:87631984-87632003 | MS.gene014848:intron | 20.0% |
!!! | TATTTTTAGGTCCAAAATTA+GGG | + | chr3.3:87631809-87631828 | None:intergenic | 20.0% |
!!! | TTGATTGATTACAGTTATTT+TGG | - | chr3.3:87630915-87630934 | MS.gene014848:intron | 20.0% |
!!! | TTTTAAAGTGGATTTTTAAC+GGG | + | chr3.3:87632342-87632361 | None:intergenic | 20.0% |
! | ACACTTAGGAAATTTAATGA+AGG | - | chr3.3:87631235-87631254 | MS.gene014848:intron | 25.0% |
! | ACTTAGGAAATTTAATGAAG+GGG | - | chr3.3:87631237-87631256 | MS.gene014848:intron | 25.0% |
! | AGATTATACACACAGAAAAA+TGG | - | chr3.3:87630375-87630394 | MS.gene014848:CDS | 25.0% |
! | AGGAAGTTAGTTAAAAAAGA+GGG | + | chr3.3:87632772-87632791 | None:intergenic | 25.0% |
! | CAAAATGGAATTAAACACTT+AGG | - | chr3.3:87631221-87631240 | MS.gene014848:intron | 25.0% |
! | CACTTAGGAAATTTAATGAA+GGG | - | chr3.3:87631236-87631255 | MS.gene014848:intron | 25.0% |
! | GATTAAAATGAATTGAATGC+AGG | + | chr3.3:87631957-87631976 | None:intergenic | 25.0% |
! | GCAAAGAATGTACAATATAA+AGG | - | chr3.3:87631379-87631398 | MS.gene014848:intron | 25.0% |
! | GTACAATATAAAGGAGAAAT+GGG | - | chr3.3:87631388-87631407 | MS.gene014848:intron | 25.0% |
! | TCTTAAGAACCAATAACATT+TGG | + | chr3.3:87632598-87632617 | None:intergenic | 25.0% |
! | TGGAATAAGTCAAAAATAGT+AGG | + | chr3.3:87631665-87631684 | None:intergenic | 25.0% |
! | TGTAAATAACAAAAAATGCG+AGG | + | chr3.3:87632532-87632551 | None:intergenic | 25.0% |
! | TGTACAATATAAAGGAGAAA+TGG | - | chr3.3:87631387-87631406 | MS.gene014848:intron | 25.0% |
!! | AAAGACTCAAACAATTTTCA+AGG | + | chr3.3:87631979-87631998 | None:intergenic | 25.0% |
!! | AAATTTTATGAGTAAGGACT+TGG | - | chr3.3:87631490-87631509 | MS.gene014848:intron | 25.0% |
!! | GACTGAAAGAAATTTTATCA+TGG | + | chr3.3:87632115-87632134 | None:intergenic | 25.0% |
!!! | CGTCAAATGCAATTTTAAAA+TGG | + | chr3.3:87632206-87632225 | None:intergenic | 25.0% |
!!! | CTTTCAGTCTTTTAAAGATT+TGG | - | chr3.3:87632126-87632145 | MS.gene014848:intron | 25.0% |
!!! | GTATTTTTAGGTCCAAAATT+AGG | + | chr3.3:87631810-87631829 | None:intergenic | 25.0% |
AAAGTCTTGAATTATCACCT+TGG | + | chr3.3:87633133-87633152 | None:intergenic | 30.0% | |
AAATGACTAAAATACCCCTA+GGG | + | chr3.3:87632091-87632110 | None:intergenic | 30.0% | |
AACACCATACTTTATAAGGA+GGG | + | chr3.3:87631342-87631361 | None:intergenic | 30.0% | |
AAGAACAATTTGAAGATGGT+TGG | - | chr3.3:87631312-87631331 | MS.gene014848:intron | 30.0% | |
AAGATGTTGTAGAAGAAAAG+CGG | - | chr3.3:87631540-87631559 | MS.gene014848:intron | 30.0% | |
ACCTATATAAGTCAAAGTCT+TGG | - | chr3.3:87632677-87632696 | MS.gene014848:intron | 30.0% | |
ACTTGCAAAATTCACATGAA+AGG | - | chr3.3:87631916-87631935 | MS.gene014848:intron | 30.0% | |
AGAATTAGTTATGGTGGTTA+GGG | + | chr3.3:87632902-87632921 | None:intergenic | 30.0% | |
ATCATGTGTATATGGAATTG+AGG | - | chr3.3:87633611-87633630 | MS.gene014848:CDS | 30.0% | |
ATGAAGAAGACTTTGACATT+AGG | - | chr3.3:87631422-87631441 | MS.gene014848:intron | 30.0% | |
ATGGTGTTCAGAAAAATGAT+TGG | - | chr3.3:87631354-87631373 | MS.gene014848:intron | 30.0% | |
ATTGCCAAGAAAAGGAATAT+GGG | - | chr3.3:87631758-87631777 | MS.gene014848:intron | 30.0% | |
CCAAAATTAGGGTATAACAA+AGG | + | chr3.3:87631798-87631817 | None:intergenic | 30.0% | |
CTTAGGAAATTTAATGAAGG+GGG | - | chr3.3:87631238-87631257 | MS.gene014848:intron | 30.0% | |
CTTATGTTATTGCCAAGAAA+AGG | - | chr3.3:87631750-87631769 | MS.gene014848:intron | 30.0% | |
CTTGCAAAATTCACATGAAA+GGG | - | chr3.3:87631917-87631936 | MS.gene014848:intron | 30.0% | |
GACTTATATAGGTGATGAAA+GGG | + | chr3.3:87632670-87632689 | None:intergenic | 30.0% | |
GAGGAAGTTAGTTAAAAAAG+AGG | + | chr3.3:87632773-87632792 | None:intergenic | 30.0% | |
GATGAAGAACAATTTGAAGA+TGG | - | chr3.3:87631308-87631327 | MS.gene014848:intron | 30.0% | |
GATTTACTGAGTAAAGAAGT+AGG | - | chr3.3:87630686-87630705 | MS.gene014848:CDS | 30.0% | |
GGACTCTAACAAACTTAAAA+GGG | + | chr3.3:87632562-87632581 | None:intergenic | 30.0% | |
TACTGATCAAGACAAATCAA+TGG | - | chr3.3:87631136-87631155 | MS.gene014848:intron | 30.0% | |
TAGGTTACATCATGTGTATA+TGG | - | chr3.3:87633603-87633622 | MS.gene014848:CDS | 30.0% | |
TATACACACAGAAAAATGGA+TGG | - | chr3.3:87630379-87630398 | MS.gene014848:CDS | 30.0% | |
TATTGCCAAGAAAAGGAATA+TGG | - | chr3.3:87631757-87631776 | MS.gene014848:intron | 30.0% | |
TCTGAACACCATACTTTATA+AGG | + | chr3.3:87631346-87631365 | None:intergenic | 30.0% | |
TGAAGAAGACTTTGACATTA+GGG | - | chr3.3:87631423-87631442 | MS.gene014848:intron | 30.0% | |
TGACTTATATAGGTGATGAA+AGG | + | chr3.3:87632671-87632690 | None:intergenic | 30.0% | |
TGATCAGTAAAAACTGTTTG+AGG | + | chr3.3:87631125-87631144 | None:intergenic | 30.0% | |
TGGACTCTAACAAACTTAAA+AGG | + | chr3.3:87632563-87632582 | None:intergenic | 30.0% | |
TTGACATGAGATTGAAACAA+GGG | + | chr3.3:87632020-87632039 | None:intergenic | 30.0% | |
TTTGACATGAGATTGAAACA+AGG | + | chr3.3:87632021-87632040 | None:intergenic | 30.0% | |
! | AATAGTAGGAGTATAAAGCT+TGG | + | chr3.3:87631651-87631670 | None:intergenic | 30.0% |
! | ACCAAGACTTTGACTTATAT+AGG | + | chr3.3:87632681-87632700 | None:intergenic | 30.0% |
! | CTGAAAACCATATCAACTTT+TGG | + | chr3.3:87630289-87630308 | None:intergenic | 30.0% |
! | GACTTTAAGAAATGCATGTA+TGG | - | chr3.3:87631278-87631297 | MS.gene014848:intron | 30.0% |
!! | ACTCAGACGAAATTTTAAAG+TGG | + | chr3.3:87632354-87632373 | None:intergenic | 30.0% |
!! | CCTTTGTTATACCCTAATTT+TGG | - | chr3.3:87631795-87631814 | MS.gene014848:intron | 30.0% |
!! | GAAATTTGTTATGGTGGTTA+GGG | + | chr3.3:87632861-87632880 | None:intergenic | 30.0% |
!!! | TCTTCAGTCTTGGAATTTTT+TGG | + | chr3.3:87631598-87631617 | None:intergenic | 30.0% |
AAAAGACTAAAATGCCCCTA+GGG | + | chr3.3:87632250-87632269 | None:intergenic | 35.0% | |
AAGGTTAGGACTTAAGAATG+TGG | - | chr3.3:87630502-87630521 | MS.gene014848:CDS | 35.0% | |
AATGACTAAAATACCCCTAG+GGG | + | chr3.3:87632090-87632109 | None:intergenic | 35.0% | |
ACAAATTGTGAAGCAAGGTT+AGG | - | chr3.3:87630488-87630507 | MS.gene014848:CDS | 35.0% | |
ACATCCCTCCTTATAAAGTA+TGG | - | chr3.3:87631335-87631354 | MS.gene014848:intron | 35.0% | |
ACCAATAACATTTGGACACA+TGG | + | chr3.3:87632590-87632609 | None:intergenic | 35.0% | |
AGAAAAGGAATATGGGAGAA+TGG | - | chr3.3:87631765-87631784 | MS.gene014848:intron | 35.0% | |
AGAAAGAAGTTTGGTACAAG+GGG | - | chr3.3:87630770-87630789 | MS.gene014848:intron | 35.0% | |
AGAAGGTTAACGAATTGGAA+TGG | - | chr3.3:87633202-87633221 | MS.gene014848:intron | 35.0% | |
AGAGAAAGAAGTTTGGTACA+AGG | - | chr3.3:87630768-87630787 | MS.gene014848:intron | 35.0% | |
ATAAGGCAGGGAATATACTT+AGG | - | chr3.3:87633524-87633543 | MS.gene014848:intron | 35.0% | |
ATGGTTCAGTTTCTTCTTGT+AGG | - | chr3.3:87630398-87630417 | MS.gene014848:CDS | 35.0% | |
ATTGAAGATGTGTGACAAAG+AGG | - | chr3.3:87633552-87633571 | MS.gene014848:intron | 35.0% | |
CAAACAATTCATACTCACGT+TGG | + | chr3.3:87631685-87631704 | None:intergenic | 35.0% | |
CAATATCTAGCTGATAAGCA+TGG | + | chr3.3:87630854-87630873 | None:intergenic | 35.0% | |
CGAATTCAGTTGTGAATTGA+AGG | + | chr3.3:87633045-87633064 | None:intergenic | 35.0% | |
GAAATGACTAAAATACCCCT+AGG | + | chr3.3:87632092-87632111 | None:intergenic | 35.0% | |
GAACACCATACTTTATAAGG+AGG | + | chr3.3:87631343-87631362 | None:intergenic | 35.0% | |
GAATGTGGATGGAAAATTGA+TGG | - | chr3.3:87630517-87630536 | MS.gene014848:CDS | 35.0% | |
GAGAAAGAAGTTTGGTACAA+GGG | - | chr3.3:87630769-87630788 | MS.gene014848:intron | 35.0% | |
GAGAATTAGTTATGGTGGTT+AGG | + | chr3.3:87632903-87632922 | None:intergenic | 35.0% | |
GGTGATAATTCAAGACTTTC+AGG | - | chr3.3:87633134-87633153 | MS.gene014848:intron | 35.0% | |
TCCAAAGAAGGTTAACGAAT+TGG | - | chr3.3:87633197-87633216 | MS.gene014848:intron | 35.0% | |
TCCAATTCGTTAACCTTCTT+TGG | + | chr3.3:87633201-87633220 | None:intergenic | 35.0% | |
TCGTTAACCTTCTTTGGATT+TGG | + | chr3.3:87633195-87633214 | None:intergenic | 35.0% | |
TGATAAGCATGGTAGAAAGT+TGG | + | chr3.3:87630843-87630862 | None:intergenic | 35.0% | |
TGGTGGTTGAGAATTAGTTA+TGG | + | chr3.3:87632911-87632930 | None:intergenic | 35.0% | |
TGGTTGAGAATTAGTTATGG+TGG | + | chr3.3:87632908-87632927 | None:intergenic | 35.0% | |
TTACTGAGTAAAGAAGTAGG+AGG | - | chr3.3:87630689-87630708 | MS.gene014848:CDS | 35.0% | |
TTAGGACTTAAGAATGTGGA+TGG | - | chr3.3:87630506-87630525 | MS.gene014848:CDS | 35.0% | |
! | AAGGCAGAAAGTGTATTGAA+CGG | - | chr3.3:87633364-87633383 | MS.gene014848:CDS | 35.0% |
! | ATCAGATCACCAATGTGTTT+TGG | - | chr3.3:87630877-87630896 | MS.gene014848:intron | 35.0% |
! | CTTCTTTGGATTTGGAATGT+CGG | + | chr3.3:87633187-87633206 | None:intergenic | 35.0% |
! | GACAACATATGAGTTGTTTC+TGG | + | chr3.3:87630584-87630603 | None:intergenic | 35.0% |
! | TCAGATCACCAATGTGTTTT+GGG | - | chr3.3:87630878-87630897 | MS.gene014848:intron | 35.0% |
! | TTCTCCCATATTCCTTTTCT+TGG | + | chr3.3:87631765-87631784 | None:intergenic | 35.0% |
!! | ATGGTTGTTGATGATGATGA+TGG | + | chr3.3:87632996-87633015 | None:intergenic | 35.0% |
!! | ATTGATTTGTGATCATGCTC+AGG | + | chr3.3:87633463-87633482 | None:intergenic | 35.0% |
!! | GAAATTTGTTATGGTGGTGA+TGG | + | chr3.3:87632820-87632839 | None:intergenic | 35.0% |
!! | GATGATGATGATGGTTGTTA+CGG | + | chr3.3:87632987-87633006 | None:intergenic | 35.0% |
!! | GGAAATTTGTTATGGTGGTT+AGG | + | chr3.3:87632862-87632881 | None:intergenic | 35.0% |
!! | GGGCATTTTAGTCTTTTCAT+GGG | - | chr3.3:87632253-87632272 | MS.gene014848:intron | 35.0% |
!! | TTGGAAGCCAAAAGTTGATA+TGG | - | chr3.3:87630279-87630298 | MS.gene014848:CDS | 35.0% |
!!! | ATTGATGGTGCATGATTTTG+TGG | - | chr3.3:87630532-87630551 | MS.gene014848:CDS | 35.0% |
AAAACTTACGGTGGTAAGGT+TGG | - | chr3.3:87630337-87630356 | MS.gene014848:CDS | 40.0% | |
AAAGACTAAAATGCCCCTAG+GGG | + | chr3.3:87632249-87632268 | None:intergenic | 40.0% | |
AAATGACCAAAATGCCCCTA+GGG | + | chr3.3:87632396-87632415 | None:intergenic | 40.0% | |
AATCCTGAGATGATTGCTAG+TGG | + | chr3.3:87630990-87631009 | None:intergenic | 40.0% | |
AATTCGTAATCACGCAGCTA+TGG | - | chr3.3:87633480-87633499 | MS.gene014848:CDS | 40.0% | |
ACATAAACCATGGTAAGCTC+CGG | + | chr3.3:87631186-87631205 | None:intergenic | 40.0% | |
AGATTTGTGAGCATGACGAT+GGG | - | chr3.3:87633575-87633594 | MS.gene014848:intron | 40.0% | |
AGCATGCTTTGTGAAAAGCA+TGG | - | chr3.3:87631706-87631725 | MS.gene014848:intron | 40.0% | |
AGTTGTGAATTGAAGGCTTG+CGG | + | chr3.3:87633038-87633057 | None:intergenic | 40.0% | |
ATCCATTTCGCCATAAGCTT+CGG | - | chr3.3:87633269-87633288 | MS.gene014848:CDS | 40.0% | |
ATTAGTTATGGTGGTTAGGG+TGG | + | chr3.3:87632899-87632918 | None:intergenic | 40.0% | |
CAAAAATTACAGCTCCTCGA+TGG | + | chr3.3:87631019-87631038 | None:intergenic | 40.0% | |
CCAGAACAAATTGTGAAGCA+AGG | - | chr3.3:87630483-87630502 | MS.gene014848:CDS | 40.0% | |
CGACATTCCAAATCCAAAGA+AGG | - | chr3.3:87633185-87633204 | MS.gene014848:intron | 40.0% | |
CTTACCATGGTTTATGTACG+TGG | - | chr3.3:87631189-87631208 | MS.gene014848:intron | 40.0% | |
GAAAAGACTAAAATGCCCCT+AGG | + | chr3.3:87632251-87632270 | None:intergenic | 40.0% | |
GAATACGAGTTCTTCAGTCT+TGG | + | chr3.3:87631608-87631627 | None:intergenic | 40.0% | |
GAATTGGAATGGTGAAGAGA+GGG | - | chr3.3:87633213-87633232 | MS.gene014848:intron | 40.0% | |
GCCATGTGTCCAAATGTTAT+TGG | - | chr3.3:87632586-87632605 | MS.gene014848:CDS | 40.0% | |
TTGGATTCTTTGTGCTTGTC+TGG | + | chr3.3:87630454-87630473 | None:intergenic | 40.0% | |
TTTAGTCAGTTTAGCCCCTA+GGG | - | chr3.3:87632073-87632092 | MS.gene014848:intron | 40.0% | |
TTTGTTCTGGTCTCTAGTCT+TGG | + | chr3.3:87630473-87630492 | None:intergenic | 40.0% | |
! | AATGGCAAAAGCATAAGCTG+AGG | - | chr3.3:87631154-87631173 | MS.gene014848:intron | 40.0% |
! | ACCACCGTAACCAATTTTTC+CGG | - | chr3.3:87632937-87632956 | MS.gene014848:intron | 40.0% |
! | AGGCAGAAAGTGTATTGAAC+GGG | - | chr3.3:87633365-87633384 | MS.gene014848:CDS | 40.0% |
! | AGGTTTGTTTGCTGCAAAGA+AGG | - | chr3.3:87630418-87630437 | MS.gene014848:CDS | 40.0% |
! | ATTGAACTAGCTGATAGTGC+CGG | - | chr3.3:87630641-87630660 | MS.gene014848:CDS | 40.0% |
! | CATCGAGGAGCTGTAATTTT+TGG | - | chr3.3:87631017-87631036 | MS.gene014848:intron | 40.0% |
! | CCTTGCTTCACAATTTGTTC+TGG | + | chr3.3:87630486-87630505 | None:intergenic | 40.0% |
! | CGATTTCCTTTGTTGTACAC+CGG | + | chr3.3:87630663-87630682 | None:intergenic | 40.0% |
! | TAGCTGCGTTTCTACTGATT+CGG | + | chr3.3:87633410-87633429 | None:intergenic | 40.0% |
! | TTTAGTCAGTTTTGCCCCTA+GGG | - | chr3.3:87632232-87632251 | MS.gene014848:intron | 40.0% |
! | TTTCTGGCAAATGTAACTCG+TGG | + | chr3.3:87630568-87630587 | None:intergenic | 40.0% |
! | TTTTAGTCAGTTTAGCCCCT+AGG | - | chr3.3:87632072-87632091 | MS.gene014848:intron | 40.0% |
! | TTTTAGTCAGTTTTGCCCCT+AGG | - | chr3.3:87632231-87632250 | MS.gene014848:intron | 40.0% |
!! | AGGTGGAGAAAGTTTGTTAG+AGG | + | chr3.3:87632797-87632816 | None:intergenic | 40.0% |
!! | ATTTGTTATGGTGGTGATGG+AGG | + | chr3.3:87632817-87632836 | None:intergenic | 40.0% |
!! | ATTTGTTATGGTGGTTAGGG+TGG | + | chr3.3:87632858-87632877 | None:intergenic | 40.0% |
!! | CAGTAGCTTTGAAGATGCTT+GGG | - | chr3.3:87630306-87630325 | MS.gene014848:CDS | 40.0% |
!! | GAGAAAGTTTGTTAGAGGTG+AGG | + | chr3.3:87632792-87632811 | None:intergenic | 40.0% |
!! | GGGGCATTTTAGTCTTTTCA+TGG | - | chr3.3:87632252-87632271 | MS.gene014848:intron | 40.0% |
!! | GTGGTGGAAATTTGTTATGG+TGG | + | chr3.3:87632826-87632845 | None:intergenic | 40.0% |
!! | GTGGTGGTGGAAATTTGTTA+TGG | + | chr3.3:87632829-87632848 | None:intergenic | 40.0% |
!! | TCAGTAGCTTTGAAGATGCT+TGG | - | chr3.3:87630305-87630324 | MS.gene014848:CDS | 40.0% |
!! | TGGGAGTTCTGGAAAACTTA+CGG | - | chr3.3:87630325-87630344 | MS.gene014848:CDS | 40.0% |
!! | TTAGTCGTTTTAAGCCCCTA+GGG | - | chr3.3:87632378-87632397 | MS.gene014848:CDS | 40.0% |
!! | TTTAGTCGTTTTAAGCCCCT+AGG | - | chr3.3:87632377-87632396 | MS.gene014848:CDS | 40.0% |
AAACTGCTGAGTCATACGAG+TGG | - | chr3.3:87631060-87631079 | MS.gene014848:intron | 45.0% | |
AAATTACAGCTCCTCGATGG+TGG | + | chr3.3:87631016-87631035 | None:intergenic | 45.0% | |
AAGAAGTTTGGTACAAGGGG+AGG | - | chr3.3:87630773-87630792 | MS.gene014848:intron | 45.0% | |
AATGACCAAAATGCCCCTAG+GGG | + | chr3.3:87632395-87632414 | None:intergenic | 45.0% | |
ACATTTGGACACATGGCACT+TGG | + | chr3.3:87632583-87632602 | None:intergenic | 45.0% | |
ACGTGGCACTTGATGCAAAA+TGG | - | chr3.3:87631206-87631225 | MS.gene014848:intron | 45.0% | |
AGACCACTAGCAATCATCTC+AGG | - | chr3.3:87630984-87631003 | MS.gene014848:intron | 45.0% | |
AGCATCTGCCCAAAACACAT+TGG | + | chr3.3:87630889-87630908 | None:intergenic | 45.0% | |
AGTAGGAGGCAGAACTAACT+TGG | - | chr3.3:87630703-87630722 | MS.gene014848:CDS | 45.0% | |
AGTGCCACGTACATAAACCA+TGG | + | chr3.3:87631196-87631215 | None:intergenic | 45.0% | |
CATAAACCATGGTAAGCTCC+GGG | + | chr3.3:87631185-87631204 | None:intergenic | 45.0% | |
CGAATTGGAATGGTGAAGAG+AGG | - | chr3.3:87633212-87633231 | MS.gene014848:intron | 45.0% | |
CGCACATTCAAACAGTTCCA+AGG | - | chr3.3:87633113-87633132 | MS.gene014848:intron | 45.0% | |
CTGGAAAACTTACGGTGGTA+AGG | - | chr3.3:87630333-87630352 | MS.gene014848:CDS | 45.0% | |
GAAATGACCAAAATGCCCCT+AGG | + | chr3.3:87632397-87632416 | None:intergenic | 45.0% | |
GAATCAGTAGAAACGCAGCT+AGG | - | chr3.3:87633409-87633428 | MS.gene014848:CDS | 45.0% | |
GAGAAGAGAGGAAGCAGATT+GGG | - | chr3.3:87633311-87633330 | MS.gene014848:CDS | 45.0% | |
GAGATTTGTGAGCATGACGA+TGG | - | chr3.3:87633574-87633593 | MS.gene014848:intron | 45.0% | |
GCAAATGTAACTCGTGGTTG+TGG | + | chr3.3:87630562-87630581 | None:intergenic | 45.0% | |
GCAGGGAATATACTTAGGAG+AGG | - | chr3.3:87633529-87633548 | MS.gene014848:intron | 45.0% | |
GTAGGAGGCAGAACTAACTT+GGG | - | chr3.3:87630704-87630723 | MS.gene014848:CDS | 45.0% | |
GTGGCCGGAAAAATTGGTTA+CGG | + | chr3.3:87632944-87632963 | None:intergenic | 45.0% | |
TACGGTGGTAAGGTTGGATT+CGG | - | chr3.3:87630343-87630362 | MS.gene014848:CDS | 45.0% | |
TAGGTGATGAAAGGGATGCT+TGG | + | chr3.3:87632662-87632681 | None:intergenic | 45.0% | |
TCAGGATTTAACCACCATCG+AGG | - | chr3.3:87631002-87631021 | MS.gene014848:intron | 45.0% | |
TGAATGTGCGATGAAGCTTG+CGG | + | chr3.3:87633103-87633122 | None:intergenic | 45.0% | |
TGATCTCAAACGGAGAAGAG+AGG | - | chr3.3:87633299-87633318 | MS.gene014848:CDS | 45.0% | |
TGGTTGTTACGGTGATTTCG+CGG | + | chr3.3:87632976-87632995 | None:intergenic | 45.0% | |
TGTTAGAGTCCAAGTCCATG+TGG | - | chr3.3:87632621-87632640 | MS.gene014848:intron | 45.0% | |
TTAGAGGTGGCCGGAAAAAT+TGG | + | chr3.3:87632950-87632969 | None:intergenic | 45.0% | |
TTAGTCAGTTTAGCCCCTAG+GGG | - | chr3.3:87632074-87632093 | MS.gene014848:intron | 45.0% | |
TTGAAGATGCTTGGGAGTTC+TGG | - | chr3.3:87630314-87630333 | MS.gene014848:CDS | 45.0% | |
TTGGTTACGGTGGTTAGAGA+TGG | + | chr3.3:87632931-87632950 | None:intergenic | 45.0% | |
! | ATTGGTAACTGGCATAAGGC+AGG | - | chr3.3:87633511-87633530 | MS.gene014848:intron | 45.0% |
! | GCTTATGGCGAAATGGATTC+TGG | + | chr3.3:87633267-87633286 | None:intergenic | 45.0% |
! | TGCGATTGGTAACTGGCATA+AGG | - | chr3.3:87633507-87633526 | MS.gene014848:intron | 45.0% |
! | TGGATCTTGCGATTGGTAAC+TGG | - | chr3.3:87633500-87633519 | MS.gene014848:intron | 45.0% |
! | TTACGACGGATTCGTGAAGA+AGG | - | chr3.3:87633345-87633364 | MS.gene014848:CDS | 45.0% |
! | TTAGTCAGTTTTGCCCCTAG+GGG | - | chr3.3:87632233-87632252 | MS.gene014848:intron | 45.0% |
! | TTGGTAACTGGCATAAGGCA+GGG | - | chr3.3:87633512-87633531 | MS.gene014848:intron | 45.0% |
!! | ATAGTGCCGGTGTACAACAA+AGG | - | chr3.3:87630654-87630673 | MS.gene014848:CDS | 45.0% |
!! | ATGTGTTTTGGGCAGATGCT+AGG | - | chr3.3:87630889-87630908 | MS.gene014848:intron | 45.0% |
!! | GAGTTCTGGAAAACTTACGG+TGG | - | chr3.3:87630328-87630347 | MS.gene014848:CDS | 45.0% |
!! | GCGTTTCTACTGATTCGGTT+TGG | + | chr3.3:87633405-87633424 | None:intergenic | 45.0% |
!! | TAGTCGTTTTAAGCCCCTAG+GGG | - | chr3.3:87632379-87632398 | MS.gene014848:CDS | 45.0% |
ACGGTGGTAAGGTTGGATTC+GGG | - | chr3.3:87630344-87630363 | MS.gene014848:CDS | 50.0% | |
AGCATGACGATGGGAGTAGT+AGG | - | chr3.3:87633584-87633603 | MS.gene014848:CDS | 50.0% | |
AGTTATGGTGGTTAGGGTGG+AGG | + | chr3.3:87632896-87632915 | None:intergenic | 50.0% | |
CGGACGAAGGTGATCTCAAA+CGG | - | chr3.3:87633289-87633308 | MS.gene014848:CDS | 50.0% | |
CGTCCAAATCCATTCCTCGA+CGG | - | chr3.3:87633075-87633094 | MS.gene014848:intron | 50.0% | |
CGTTGAATATGGCGGCGAAA+TGG | + | chr3.3:87633015-87633034 | None:intergenic | 50.0% | |
GAGGAAGCAGATTGGGCAAA+CGG | - | chr3.3:87633318-87633337 | MS.gene014848:CDS | 50.0% | |
GCAGCTATGGATCTTGCGAT+TGG | - | chr3.3:87633493-87633512 | MS.gene014848:intron | 50.0% | |
GCATAAGCTGAGGTTATGCC+CGG | - | chr3.3:87631164-87631183 | MS.gene014848:intron | 50.0% | |
GCCGGAAAAATTGGTTACGG+TGG | + | chr3.3:87632941-87632960 | None:intergenic | 50.0% | |
GGAGAAGAGAGGAAGCAGAT+TGG | - | chr3.3:87633310-87633329 | MS.gene014848:CDS | 50.0% | |
GGTATACTGCAGCTTGCAAG+CGG | + | chr3.3:87633246-87633265 | None:intergenic | 50.0% | |
GGTTGTGCAAACAACCTCCA+AGG | - | chr3.3:87633155-87633174 | MS.gene014848:intron | 50.0% | |
GTCCGAAGCTTATGGCGAAA+TGG | + | chr3.3:87633274-87633293 | None:intergenic | 50.0% | |
GTGCAAACAACCTCCAAGGT+CGG | - | chr3.3:87633159-87633178 | MS.gene014848:intron | 50.0% | |
GTTACGGTGGTTAGAGATGG+TGG | + | chr3.3:87632928-87632947 | None:intergenic | 50.0% | |
TCACCTTCGTCCGAAGCTTA+TGG | + | chr3.3:87633282-87633301 | None:intergenic | 50.0% | |
TGTTATGGTGGTTAGGGTGG+AGG | + | chr3.3:87632855-87632874 | None:intergenic | 50.0% | |
TTGTTACGGTGATTTCGCGG+TGG | + | chr3.3:87632973-87632992 | None:intergenic | 50.0% | |
! | AAGGCTTGCGGCGTTGAATA+TGG | + | chr3.3:87633026-87633045 | None:intergenic | 50.0% |
!! | TGTTATGGTGGTGATGGAGG+TGG | + | chr3.3:87632814-87632833 | None:intergenic | 50.0% |
!!! | TTAAGCCCCTAGGGGCATTT+TGG | - | chr3.3:87632387-87632406 | MS.gene014848:CDS | 50.0% |
AATGTCGGAACCGACCTTGG+AGG | + | chr3.3:87633172-87633191 | None:intergenic | 55.0% | |
AGTTTGGTACAAGGGGAGGC+TGG | - | chr3.3:87630777-87630796 | MS.gene014848:intron | 55.0% | |
CGGTGGTAAGGTTGGATTCG+GGG | - | chr3.3:87630345-87630364 | MS.gene014848:CDS | 55.0% | |
GATTTCGCGGTGGTTAGAGG+TGG | + | chr3.3:87632963-87632982 | None:intergenic | 55.0% | |
GGGATGCTTGGACCAATGAC+TGG | + | chr3.3:87632650-87632669 | None:intergenic | 55.0% | |
GGGCAAACGGTAGCTTACGA+CGG | - | chr3.3:87633331-87633350 | MS.gene014848:CDS | 55.0% | |
GGTGATTTCGCGGTGGTTAG+AGG | + | chr3.3:87632966-87632985 | None:intergenic | 55.0% | |
GTAAGGTTGGATTCGGGGTG+AGG | - | chr3.3:87630350-87630369 | MS.gene014848:CDS | 55.0% | |
GTTATGCCCGGAGCTTACCA+TGG | - | chr3.3:87631176-87631195 | MS.gene014848:intron | 55.0% | |
TCCATGTGGCAGCCAGTCAT+TGG | - | chr3.3:87632635-87632654 | MS.gene014848:intron | 55.0% | |
TCGCCATAAGCTTCGGACGA+AGG | - | chr3.3:87633276-87633295 | MS.gene014848:CDS | 55.0% | |
TGGAATGTCGGAACCGACCT+TGG | + | chr3.3:87633175-87633194 | None:intergenic | 55.0% | |
! | ACCAATGACTGGCTGCCACA+TGG | + | chr3.3:87632639-87632658 | None:intergenic | 55.0% |
! | GCTTGCGGCGTTGAATATGG+CGG | + | chr3.3:87633023-87633042 | None:intergenic | 55.0% |
! | GTGCCGTCGAGGAATGGATT+TGG | + | chr3.3:87633081-87633100 | None:intergenic | 55.0% |
GTGGTTAGGGTGGAGGAGAG+TGG | + | chr3.3:87632848-87632867 | None:intergenic | 60.0% | |
GTTAGGGTGGAGGAGAGTGG+TGG | + | chr3.3:87632845-87632864 | None:intergenic | 60.0% | |
! | GACTGGCTGCCACATGGACT+TGG | + | chr3.3:87632633-87632652 | None:intergenic | 60.0% |
AGGGTGGAGGAGAGTGGTGG+TGG | + | chr3.3:87632842-87632861 | None:intergenic | 65.0% | |
TCGCGGTGGTTAGAGGTGGC+CGG | + | chr3.3:87632959-87632978 | None:intergenic | 65.0% | |
!! | CTTGCGGTGCCGTCGAGGAA+TGG | + | chr3.3:87633087-87633106 | None:intergenic | 65.0% |
!! | TGAAGCTTGCGGTGCCGTCG+AGG | + | chr3.3:87633092-87633111 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 87630268 | 87633663 | 87630268 | ID=MS.gene014848 |
chr3.3 | mRNA | 87630268 | 87633663 | 87630268 | ID=MS.gene014848.t1;Parent=MS.gene014848 |
chr3.3 | exon | 87633582 | 87633663 | 87633582 | ID=MS.gene014848.t1.exon1;Parent=MS.gene014848.t1 |
chr3.3 | CDS | 87633582 | 87633663 | 87633582 | ID=cds.MS.gene014848.t1;Parent=MS.gene014848.t1 |
chr3.3 | exon | 87633236 | 87633511 | 87633236 | ID=MS.gene014848.t1.exon2;Parent=MS.gene014848.t1 |
chr3.3 | CDS | 87633236 | 87633511 | 87633236 | ID=cds.MS.gene014848.t1;Parent=MS.gene014848.t1 |
chr3.3 | exon | 87632370 | 87632622 | 87632370 | ID=MS.gene014848.t1.exon3;Parent=MS.gene014848.t1 |
chr3.3 | CDS | 87632370 | 87632622 | 87632370 | ID=cds.MS.gene014848.t1;Parent=MS.gene014848.t1 |
chr3.3 | exon | 87630268 | 87630775 | 87630268 | ID=MS.gene014848.t1.exon4;Parent=MS.gene014848.t1 |
chr3.3 | CDS | 87630268 | 87630775 | 87630268 | ID=cds.MS.gene014848.t1;Parent=MS.gene014848.t1 |
Gene Sequence |
Protein sequence |