AlfalfaGEDB | MS.gene014888

M. sativa cultivar XinJiangDaYe / MS.gene014888

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014888.t1	XP_003603313.1	86.8	235	24	3	1	235	1	228	1.30E-106	396

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014888.t1	Q39262	36.6	246	107	13	29	252	17	235	6.9e-19	95.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014888.t1	G7J9W4	86.8	235	24	3	1	235	1	228	9.6e-107	396.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene014888.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014888.t1	MTR_3g106230	85.532	235	27	3	1	235	1	228	2.59e-140	393
MS.gene014888.t1	MTR_1g013130	48.438	256	107	11	5	252	24	262	2.70e-60	191
MS.gene014888.t1	MTR_2g104900	38.583	254	117	15	12	252	20	247	4.17e-32	118
MS.gene014888.t1	MTR_4g006575	37.037	189	79	6	75	252	65	224	2.07e-25	100
MS.gene014888.t1	MTR_4g006600	37.037	189	79	6	75	252	65	224	2.07e-25	100
MS.gene014888.t1	MTR_1g033340	44.068	118	42	6	54	165	69	168	7.60e-19	83.2
MS.gene014888.t1	MTR_5g077370	50.538	93	26	3	76	167	86	159	4.64e-18	80.9
MS.gene014888.t1	MTR_3g065020	48.913	92	26	4	77	167	86	157	3.33e-17	78.6
MS.gene014888.t1	MTR_1g107055	41.584	101	29	4	71	166	57	132	2.34e-14	69.7
MS.gene014888.t1	MTR_4g128340	73.684	38	10	0	75	112	43	80	7.33e-14	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014888.t1	AT5G25160	38.496	226	91	12	48	252	37	235	4.93e-28	107
MS.gene014888.t1	AT5G10970	36.652	221	97	10	48	252	79	272	4.63e-26	103
MS.gene014888.t1	AT1G80730	49.485	97	46	3	71	166	60	154	6.55e-22	90.9
MS.gene014888.t1	AT1G66140	46.739	92	37	3	77	161	83	169	6.51e-16	75.5
MS.gene014888.t1	AT1G24625	76.316	38	9	0	74	111	54	91	3.43e-15	72.4
MS.gene014888.t1	AT5G57520	65.909	44	15	0	75	118	48	91	1.84e-14	69.3
MS.gene014888.t1	AT5G14010	73.529	34	9	0	77	110	36	69	2.02e-12	63.9
MS.gene014888.t1	AT1G67030	44.944	89	44	3	44	132	7	90	6.47e-11	60.5
MS.gene014888.t1	AT3G58070	52.459	61	24	1	56	116	73	128	7.33e-11	61.2

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Find 45 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTCACAAGAGAGAG+AGG	0.643637	3.3:+87184688	MS.gene014888:CDS
ACGATGTTCTCAGCAACAGG+AGG	0.689396	3.3:+87184735	MS.gene014888:CDS
AGAACGATGTTCTCAGCAAC+AGG	0.459446	3.3:+87184732	MS.gene014888:CDS
AGAATTATCTATGTCTAAAC+AGG	0.387114	3.3:-87184547	None:intergenic
AGAGCTTTAACGATAAGTCA+AGG	0.617739	3.3:-87185130	None:intergenic
AGCAATTATTATGGGTATCA+TGG	0.430203	3.3:+87184930	MS.gene014888:CDS
ATATTTATGAAGAAATGAGG+TGG	0.662714	3.3:-87184760	None:intergenic
ATGAATCAACAATCTGGAAG+AGG	0.552126	3.3:+87184969	MS.gene014888:CDS
ATGATATTTATGAAGAAATG+AGG	0.554191	3.3:-87184763	None:intergenic
ATGCAAACTTTCCAGGAAAC+AGG	0.389355	3.3:+87185002	MS.gene014888:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAATTATTATGGGTATCA+TGG	+	chr3.3:87184930-87184949	MS.gene014888:CDS	30.0%
ATTATTATGGGTATCATGGA+TGG	+	chr3.3:87184934-87184953	MS.gene014888:CDS	30.0%
TAGATTCGGAAAGGTTAAAA+AGG	+	chr3.3:87185049-87185068	MS.gene014888:CDS	30.0%
TATGAGACCATTTGCAATTA+AGG	+	chr3.3:87184848-87184867	MS.gene014888:CDS	30.0%
TTATGTTTCTCCAATTCATG+TGG	-	chr3.3:87184420-87184439	None:intergenic	30.0%
AAAAAGGACATGCTCAATTC+AGG	+	chr3.3:87185065-87185084	MS.gene014888:CDS	35.0%
ATGAATCAACAATCTGGAAG+AGG	+	chr3.3:87184969-87184988	MS.gene014888:CDS	35.0%
ATTGCAGAATCCACATGAAT+TGG	+	chr3.3:87184407-87184426	MS.gene014888:CDS	35.0%
CTAACGATGATTGTGATCTT+GGG	+	chr3.3:87184499-87184518	MS.gene014888:CDS	35.0%
GAGATGCCATATTTGCATAA+CGG	-	chr3.3:87184797-87184816	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	87184396	87185154	87184396	ID=MS.gene014888
chr3.3	mRNA	87184396	87185154	87184396	ID=MS.gene014888.t1;Parent=MS.gene014888
chr3.3	exon	87184396	87185154	87184396	ID=MS.gene014888.t1.exon1;Parent=MS.gene014888.t1
chr3.3	CDS	87184396	87185154	87184396	ID=cds.MS.gene014888.t1;Parent=MS.gene014888.t1

Gene Sequence

>MS.gene014888

ATGGAAATATCATTGCAGAATCCACATGAATTGGAGAAACATAAAACTTTTGAGGAAGAAGAAAAGGAAGCAAAGGTAGACACTTCATTTGATCTGAATGTTCCTAACGATGATTGTGATCTTGGGTGCAGTTTAAAGTCAAATTTAGTTACCTGTTTAGACATAGATAATTCTTCTAAAACATCATCAGAAAACTTCACTTGTGGCTCTGAATCAACTTCAGAGCCACGATTTTTCACTTGCAACTACTGCAAGAGAAAATTCTTCAGTTCACAAGCACTTGGGGGACATCAAAATGCTCACAAGAGAGAGAGGTCAATTGCAAAAAGAGGACGGAGAACGATGTTCTCAGCAACAGGAGGAACCACCTCATTTCTTCATAAATATCATCTTCACAACCGTTATGCAAATATGGCATCTCTACTACCACTCTTCTGTGCTAATAGTAATAGTATGAGACCATTTGCAATTAAGGCACACTCGATGGTTCAGAAGCCTTTTCATAAATTTTCATCCAATGGCTTTGGAATTGAAAGCAATTATTATGGGTATCATGGATGGTCAAGACCCCTTATGAATCAACAATCTGGAAGAGGAAAGCTACTGATGCAAACTTTCCAGGAAACAGGATTACCATCACAAAGTAGTGTTGGTAGATTCGGAAAGGTTAAAAAGGACATGCTCAATTCAGGAACTGGTTTGAACTCGAAGAGTAATCAACAAGAGGTGAAGCACCTTGACTTATCGTTAAAGCTCTAA

Protein sequence

>MS.gene014888.t1

MEISLQNPHELEKHKTFEEEEKEAKVDTSFDLNVPNDDCDLGCSLKSNLVTCLDIDNSSKTSSENFTCGSESTSEPRFFTCNYCKRKFFSSQALGGHQNAHKRERSIAKRGRRTMFSATGGTTSFLHKYHLHNRYANMASLLPLFCANSNSMRPFAIKAHSMVQKPFHKFSSNGFGIESNYYGYHGWSRPLMNQQSGRGKLLMQTFQETGLPSQSSVGRFGKVKKDMLNSGTGLNSKSNQQEVKHLDLSLKL