AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01492

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01492.t1 MTR_4g088125 73.830 470 108 3 3 461 5 470 0.0 712
MS.gene01492.t1 MTR_4g079240 45.783 498 201 10 3 437 6 497 7.73e-137 403
MS.gene01492.t1 MTR_2g014870 93.701 127 5 2 1 124 1 127 8.19e-76 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01492.t1 AT1G28520 64.807 466 139 6 3 450 6 464 0.0 588
MS.gene01492.t1 AT1G28520 64.807 466 139 6 3 450 6 464 0.0 588
MS.gene01492.t1 AT1G28520 64.807 466 139 6 3 450 6 464 0.0 588
MS.gene01492.t1 AT1G28520 64.807 466 139 6 3 450 6 464 0.0 588
MS.gene01492.t1 AT1G28520 62.017 466 136 7 3 450 6 448 0.0 550
MS.gene01492.t1 AT2G42400 48.864 440 178 10 10 416 9 434 3.37e-123 367

Find 115 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCATCACTTGCTTTC+TGG -0.000768 2.2:+68205311 None:intergenic
GTTGCCGCTCCCTCGCATTC+TGG 0.120554 2.2:+68205590 None:intergenic
GTATGTACTCATCCATTAAT+AGG 0.244748 2.2:+68206032 None:intergenic
TTGGAACTAAAGCTCGTTAA+TGG 0.245316 2.2:-68205177 MS.gene01492:CDS
TCAGCATGATTCCCTATTAA+TGG 0.250839 2.2:-68206044 MS.gene01492:CDS
CATAAAGATGCCACTCAAAA+TGG 0.277276 2.2:+68205241 None:intergenic
CGAGTTGTTAGTTGATTTAC+TGG 0.280780 2.2:+68205991 None:intergenic
TTGCCGCTCCCTCGCATTCT+GGG 0.309111 2.2:+68205591 None:intergenic
AGGTCGTTGCCTGATTATAA+TGG 0.319828 2.2:-68205351 MS.gene01492:CDS
GGTAGATAGGTAGGTATATA+AGG 0.325810 2.2:+68205854 None:intergenic
GTCAGCCTTGGCATTAGGTT+TGG 0.334729 2.2:+68205038 None:intergenic
GTCTGCATATTCTGATCATT+AGG 0.347297 2.2:+68206569 None:intergenic
GAGTACATACACTCCATCTT+AGG 0.353453 2.2:-68206019 MS.gene01492:CDS
CCCATGTCAGCCTTGGCATT+AGG 0.366697 2.2:+68205033 None:intergenic
AGGGCAGATGCTTGGTAGAT+AGG 0.368518 2.2:+68205841 None:intergenic
AAGCAAGTGATGAAAGAGTT+TGG 0.371141 2.2:-68205306 MS.gene01492:CDS
TCCTGCTTCTTCTTTGCAGC+AGG 0.376005 2.2:-68206830 MS.gene01492:intron
ATCATTTGTTATCTTTGTCC+TGG 0.382306 2.2:+68205143 None:intergenic
AGCAGAATGTCTGTTATCAT+AGG 0.386907 2.2:+68205071 None:intergenic
AGGTTCAAAATGTGCACTTT+GGG 0.394325 2.2:-68205801 MS.gene01492:CDS
CCTCCTCCTTCCGCTTTCCT+AGG 0.410735 2.2:-68205821 MS.gene01492:CDS
TGCCACTCAAAATGGTTTAG+TGG 0.430399 2.2:+68205249 None:intergenic
TCAAAATGGTTTAGTGGTTG+TGG 0.432899 2.2:+68205255 None:intergenic
CCTTCCACTCACGAAGCATC+TGG 0.436154 2.2:+68206872 None:intergenic
TCATGCTTAGGCACAGCTAA+TGG 0.436229 2.2:+68206593 None:intergenic
TAGGTTCAAAATGTGCACTT+TGG 0.438695 2.2:-68205802 MS.gene01492:CDS
GTGATGCATGTGCGTTATAT+CGG 0.439847 2.2:-68205200 MS.gene01492:CDS
CTGCAGTAGCCTACATATAT+CGG 0.447566 2.2:+68206646 None:intergenic
GGTCGTTGCCTGATTATAAT+GGG 0.452127 2.2:-68205350 MS.gene01492:CDS
TATGTACTCATCCATTAATA+GGG 0.456560 2.2:+68206033 None:intergenic
TGGAACTAAAGCTCGTTAAT+GGG 0.459138 2.2:-68205176 MS.gene01492:CDS
GCTGCTCTTGCTTTAAATGA+AGG 0.460368 2.2:-68205719 MS.gene01492:CDS
CATCCCCGCCCATTATAATC+AGG 0.465616 2.2:+68205342 None:intergenic
TGATCATTAGGTTCATGCTT+AGG 0.466635 2.2:+68206581 None:intergenic
TAGCCCCAGTTCTACGACCT+GGG 0.466781 2.2:-68205685 MS.gene01492:CDS
TGCTTTCTTACAGCTACCCT+TGG 0.466878 2.2:+68207023 None:intergenic
ACCTAATGCCAAGGCTGACA+TGG 0.476238 2.2:-68205034 MS.gene01492:CDS
CGTAGAACTGGGGCTATGCC+TGG 0.483033 2.2:+68205692 None:intergenic
TGATCTGCAGTTTGCTAGGA+AGG 0.490071 2.2:-68206938 MS.gene01492:CDS
CTGATTATAATGGGCGGGGA+TGG 0.493655 2.2:-68205341 MS.gene01492:CDS
TCCTAGCAAACTGCAGATCA+AGG 0.504979 2.2:+68206941 None:intergenic
GTTGCCTGATTATAATGGGC+GGG 0.508969 2.2:-68205346 MS.gene01492:CDS
TGGTTGTGGATCCATGTAGT+AGG 0.510429 2.2:+68205269 None:intergenic
CATCCCAGAATGCGAGGGAG+CGG 0.511232 2.2:-68205594 MS.gene01492:CDS
TATACTGCTTTCAGAGGCAC+AGG 0.514147 2.2:-68205899 MS.gene01492:CDS
TTTACTGGGAGCTCCTAAGA+TGG 0.517698 2.2:+68206006 None:intergenic
AACACCACCCATGTCAGCCT+TGG 0.521369 2.2:+68205026 None:intergenic
CCTAGGAAAGCGGAAGGAGG+AGG 0.522377 2.2:+68205821 None:intergenic
GAAGGAGGAGGGCAGATGCT+TGG 0.522630 2.2:+68205833 None:intergenic
CTCTCAACAAGATAGTCATA+TGG 0.523925 2.2:+68204976 None:intergenic
TGTGGATGTCGCGCTTCTTG+AGG 0.525115 2.2:-68206905 MS.gene01492:CDS
AGCATCACACAGGCTTATCA+AGG 0.532332 2.2:-68207004 MS.gene01492:CDS
CACAAGTTCAACCCTTCCGC+GGG 0.534065 2.2:+68205767 None:intergenic
CCAGATGCTTCGTGAGTGGA+AGG 0.543218 2.2:-68206872 MS.gene01492:CDS
TGATAACAGACATTCTGCTA+AGG 0.543724 2.2:-68205067 MS.gene01492:CDS
GGCACAGGCTTTAGTGAGGA+TGG 0.545649 2.2:-68205884 MS.gene01492:CDS
ACCTGCTGCAAAGAAGAAGC+AGG 0.547011 2.2:+68206829 None:intergenic
CATTCTCGACCGATATATGT+AGG 0.550090 2.2:-68206655 MS.gene01492:CDS
CAGATGCTTGGTAGATAGGT+AGG 0.551289 2.2:+68205845 None:intergenic
GCTTTAAATGAAGGACAACC+AGG 0.554170 2.2:-68205710 MS.gene01492:CDS
GCAGAATGTCTGTTATCATA+GGG 0.554543 2.2:+68205072 None:intergenic
AGTTAAGGATAATTTACTGT+TGG 0.554729 2.2:-68205654 MS.gene01492:CDS
ATAGCCCCAGTTCTACGACC+TGG 0.557433 2.2:-68205686 MS.gene01492:CDS
TGAGGTTTAGATGATTTCCA+AGG 0.559690 2.2:-68207040 None:intergenic
ATAGGGAATCATGCTGATGT+TGG 0.560720 2.2:+68206050 None:intergenic
TTAATGGGAAGAAGAGCTCC+AGG 0.561240 2.2:-68205161 MS.gene01492:CDS
TCCTTGATCTGCAGTTTGCT+AGG 0.561339 2.2:-68206942 MS.gene01492:CDS
CAGTAAATCAACTAACAACT+CGG 0.567663 2.2:-68205990 MS.gene01492:CDS
ACACAAGTTCAACCCTTCCG+CGG 0.569071 2.2:+68205766 None:intergenic
TGCAAAGAAGAAGCAGGAGA+AGG 0.571409 2.2:+68206835 None:intergenic
AAGTCTCCGTGGAATGCACC+TGG 0.578340 2.2:-68205563 MS.gene01492:intron
CTAGGAAAGCGGAAGGAGGA+GGG 0.578498 2.2:+68205822 None:intergenic
TTGCCTGATTATAATGGGCG+GGG 0.584990 2.2:-68205345 MS.gene01492:CDS
AAGTGATGAAAGAGTTTGGA+GGG 0.587404 2.2:-68205302 MS.gene01492:CDS
GACTGTTCAAGACCCGCGGA+AGG 0.587498 2.2:-68205779 MS.gene01492:CDS
GCTCTTAGTGCAAAGACAGA+AGG 0.588265 2.2:-68205629 MS.gene01492:CDS
GATAACAGACATTCTGCTAA+GGG 0.588460 2.2:-68205066 MS.gene01492:CDS
ACAAGATAGTCATATGGTGA+TGG 0.593941 2.2:+68204982 None:intergenic
CAGTTACTGATCTTCAGAAG+CGG 0.596139 2.2:-68205119 MS.gene01492:CDS
TTCACCAGATGCTTCGTGAG+TGG 0.596799 2.2:-68206876 MS.gene01492:CDS
TGCATGTGCGTTATATCGGT+TGG 0.607322 2.2:-68205196 MS.gene01492:CDS
AACTGTTATACTGCTTTCAG+AGG 0.607971 2.2:-68205905 MS.gene01492:CDS
CAGAGCCAAACCTAATGCCA+AGG 0.608334 2.2:-68205043 MS.gene01492:CDS
AGGAGAAGGCTCATTGAGCT+CGG 0.609324 2.2:+68206849 None:intergenic
AATCAACTAACAACTCGGAT+AGG 0.609346 2.2:-68205985 MS.gene01492:CDS
AGCCCCAGTTCTACGACCTG+GGG 0.611570 2.2:-68205684 MS.gene01492:CDS
CCTAATGCCAAGGCTGACAT+GGG 0.613097 2.2:-68205033 MS.gene01492:CDS
CTAATACCAGGTGCATTCCA+CGG 0.614138 2.2:+68205557 None:intergenic
TGTCGGCATCCCAGAATGCG+AGG 0.614404 2.2:-68205600 MS.gene01492:CDS
GCTACTGCAGCTCTGTGAAG+AGG 0.620067 2.2:-68206633 MS.gene01492:CDS
AAGACAGAAGGAAAAGATGT+CGG 0.620071 2.2:-68205617 MS.gene01492:CDS
GAGGTTTAGATGATTTCCAA+GGG 0.620877 2.2:-68207039 None:intergenic
CAGAGGCACAGGCTTTAGTG+AGG 0.620913 2.2:-68205888 MS.gene01492:CDS
AGGCACAGCTAATGGACTAG+TGG 0.628612 2.2:+68206601 None:intergenic
CGTTGCCTGATTATAATGGG+CGG 0.632470 2.2:-68205347 MS.gene01492:CDS
TTTGAACCTAGGAAAGCGGA+AGG 0.634334 2.2:+68205815 None:intergenic
GCTGAAGAGATCCTACTACA+TGG 0.634906 2.2:-68205280 MS.gene01492:CDS
CAACTAACAACTCGGATAGG+CGG 0.636833 2.2:-68205982 MS.gene01492:CDS
TCTCGAAGAGCATTTGAGAG+TGG 0.636901 2.2:-68205387 MS.gene01492:CDS
ACTGTTCAAGACCCGCGGAA+GGG 0.637959 2.2:-68205778 MS.gene01492:CDS
TTGGGACTGTTCAAGACCCG+CGG 0.641938 2.2:-68205783 MS.gene01492:CDS
GAAGCGCGACATCCACACTA+CGG 0.643778 2.2:+68206911 None:intergenic
TCACATGCAGATCATCTACA+TGG 0.644881 2.2:+68206968 None:intergenic
GAACCTAGGAAAGCGGAAGG+AGG 0.646171 2.2:+68205818 None:intergenic
TCTGTTATCATAGGGAAACT+CGG 0.647001 2.2:+68205080 None:intergenic
CGGCAACTGCAAAGTCTCCG+TGG 0.652685 2.2:-68205574 MS.gene01492:CDS
GTCGGCATCCCAGAATGCGA+GGG 0.657248 2.2:-68205599 MS.gene01492:CDS
TAGGAAGGAGAGCCGTAGTG+TGG 0.661628 2.2:-68206923 MS.gene01492:CDS
GAGTTGTTAGTTGATTTACT+GGG 0.663415 2.2:+68205992 None:intergenic
CAAGTGATGAAAGAGTTTGG+AGG 0.680936 2.2:-68205303 MS.gene01492:CDS
GCTGTAAGAAAGCATCACAC+AGG 0.691286 2.2:-68207014 MS.gene01492:CDS
ACACAGGCTTATCAAGGACA+AGG 0.694542 2.2:-68206998 MS.gene01492:CDS
AGAGTGGAAACAGAAAGCAA+AGG 0.717117 2.2:-68205371 MS.gene01492:CDS
GCCCCAGTTCTACGACCTGG+GGG 0.725582 2.2:-68205683 MS.gene01492:CDS
AATGCCAAGGCTGACATGGG+TGG 0.739584 2.2:-68205030 MS.gene01492:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATTTTTTAGAGAAA+AGG + chr2.2:68205712-68205731 None:intergenic 10.0%
!! AAACACATAAATAGTTTAAT+AGG + chr2.2:68206476-68206495 None:intergenic 15.0%
!!! TTTTATTTTTTCTGTAGTAT+TGG - chr2.2:68205533-68205552 MS.gene01492:intron 15.0%
!! AAATCTGCATATTAAAGTTA+AGG + chr2.2:68205201-68205220 None:intergenic 20.0%
!! TAATTCATATACTAGAGTAA+GGG - chr2.2:68205604-68205623 MS.gene01492:CDS 20.0%
!! TTAATATGCAGATTTAATTG+TGG - chr2.2:68205206-68205225 MS.gene01492:CDS 20.0%
!! TTAATTCATATACTAGAGTA+AGG - chr2.2:68205603-68205622 MS.gene01492:CDS 20.0%
!!! GTTGTATTGTTTTTTATATG+TGG - chr2.2:68205683-68205702 MS.gene01492:CDS 20.0%
!!! TTATTTTCAATTGACAGAAA+TGG - chr2.2:68205739-68205758 MS.gene01492:CDS 20.0%
! AGTTAAGGATAATTTACTGT+TGG - chr2.2:68206333-68206352 MS.gene01492:intron 25.0%
! ATGATGCATAAGAACAAATT+GGG + chr2.2:68205831-68205850 None:intergenic 25.0%
! ATTTAATTGTGGATTTGTGA+TGG - chr2.2:68205217-68205236 MS.gene01492:CDS 25.0%
! GAGAAAATTGGTATTAACTA+AGG + chr2.2:68205793-68205812 None:intergenic 25.0%
! TATGATGCATAAGAACAAAT+TGG + chr2.2:68205832-68205851 None:intergenic 25.0%
! TATGATTGTAACAAGTTTCT+TGG - chr2.2:68205896-68205915 MS.gene01492:CDS 25.0%
! TATGTACTCATCCATTAATA+GGG + chr2.2:68205957-68205976 None:intergenic 25.0%
!! TTTGATCTTTTTGTTCTTGA+GGG - chr2.2:68206543-68206562 MS.gene01492:intron 25.0%
!!! CGACATTTTGATTCAAAATT+AGG + chr2.2:68206031-68206050 None:intergenic 25.0%
AACTTGAATGGCAATATTTG+TGG - chr2.2:68205249-68205268 MS.gene01492:CDS 30.0%
CAGTAAATCAACTAACAACT+CGG - chr2.2:68205997-68206016 MS.gene01492:CDS 30.0%
CTTTGTGATTTGATCATAAC+TGG - chr2.2:68205504-68205523 MS.gene01492:intron 30.0%
GTATGTACTCATCCATTAAT+AGG + chr2.2:68205958-68205977 None:intergenic 30.0%
TGTATGAATAATCACTGAAG+AGG + chr2.2:68205483-68205502 None:intergenic 30.0%
! ATTTGAGTTTGCCATGTTTA+TGG - chr2.2:68205283-68205302 MS.gene01492:CDS 30.0%
! CTTTGATCTTTTTGTTCTTG+AGG - chr2.2:68206542-68206561 MS.gene01492:intron 30.0%
! GAGTTGTTAGTTGATTTACT+GGG + chr2.2:68205998-68206017 None:intergenic 30.0%
! TTGATCTTTTTGTTCTTGAG+GGG - chr2.2:68206544-68206563 MS.gene01492:CDS 30.0%
! TTTGAGTTTGCCATGTTTAT+GGG - chr2.2:68205284-68205303 MS.gene01492:CDS 30.0%
!! ATCATTTGTTATCTTTGTCC+TGG + chr2.2:68206847-68206866 None:intergenic 30.0%
AACTGTTATACTGCTTTCAG+AGG - chr2.2:68206082-68206101 MS.gene01492:intron 35.0%
AAGACAGAAGGAAAAGATGT+CGG - chr2.2:68206370-68206389 MS.gene01492:intron 35.0%
AAGCAAGTGATGAAAGAGTT+TGG - chr2.2:68206681-68206700 MS.gene01492:intron 35.0%
AAGTGATGAAAGAGTTTGGA+GGG - chr2.2:68206685-68206704 MS.gene01492:intron 35.0%
AATCAACTAACAACTCGGAT+AGG - chr2.2:68206002-68206021 MS.gene01492:CDS 35.0%
ACAAGATAGTCATATGGTGA+TGG + chr2.2:68207008-68207027 None:intergenic 35.0%
AGCAGAATGTCTGTTATCAT+AGG + chr2.2:68206919-68206938 None:intergenic 35.0%
AGGTTCAAAATGTGCACTTT+GGG - chr2.2:68206186-68206205 MS.gene01492:intron 35.0%
ATAATCACTGAAGAGGAGAA+AGG + chr2.2:68205476-68205495 None:intergenic 35.0%
CATAAAGATGCCACTCAAAA+TGG + chr2.2:68206749-68206768 None:intergenic 35.0%
CATGTTTATGGGTGATGATA+GGG - chr2.2:68205295-68205314 MS.gene01492:CDS 35.0%
CTCTCAACAAGATAGTCATA+TGG + chr2.2:68207014-68207033 None:intergenic 35.0%
GATAACAGACATTCTGCTAA+GGG - chr2.2:68206921-68206940 MS.gene01492:CDS 35.0%
GCAGAATGTCTGTTATCATA+GGG + chr2.2:68206918-68206937 None:intergenic 35.0%
GCATTCTACATTCTAATACC+AGG + chr2.2:68206445-68206464 None:intergenic 35.0%
GGTAGATAGGTAGGTATATA+AGG + chr2.2:68206136-68206155 None:intergenic 35.0%
GTCTGCATATTCTGATCATT+AGG + chr2.2:68205421-68205440 None:intergenic 35.0%
TAGGTTCAAAATGTGCACTT+TGG - chr2.2:68206185-68206204 MS.gene01492:intron 35.0%
TCAAAATGGTTTAGTGGTTG+TGG + chr2.2:68206735-68206754 None:intergenic 35.0%
TCAGCATGATTCCCTATTAA+TGG - chr2.2:68205943-68205962 MS.gene01492:CDS 35.0%
TCTGTTATCATAGGGAAACT+CGG + chr2.2:68206910-68206929 None:intergenic 35.0%
TGATAACAGACATTCTGCTA+AGG - chr2.2:68206920-68206939 MS.gene01492:CDS 35.0%
TGATCATTAGGTTCATGCTT+AGG + chr2.2:68205409-68205428 None:intergenic 35.0%
TGGAACTAAAGCTCGTTAAT+GGG - chr2.2:68206811-68206830 MS.gene01492:intron 35.0%
TGGACACATGTAAACTTGAA+TGG - chr2.2:68205237-68205256 MS.gene01492:CDS 35.0%
TTGGAACTAAAGCTCGTTAA+TGG - chr2.2:68206810-68206829 MS.gene01492:intron 35.0%
! AAAGTGCACATTTTGAACCT+AGG + chr2.2:68206186-68206205 None:intergenic 35.0%
! AACCACTAAACCATTTTGAG+TGG - chr2.2:68206736-68206755 MS.gene01492:intron 35.0%
! ACATTTTGAACCTAGGAAAG+CGG + chr2.2:68206179-68206198 None:intergenic 35.0%
! CGAGTTGTTAGTTGATTTAC+TGG + chr2.2:68205999-68206018 None:intergenic 35.0%
! TGAGTTGTTGGTGAGAAAAT+TGG + chr2.2:68205805-68205824 None:intergenic 35.0%
! TGATCTTTTTGTTCTTGAGG+GGG - chr2.2:68206545-68206564 MS.gene01492:CDS 35.0%
AATGGAGAGCAAGGATTTGA+TGG - chr2.2:68205757-68205776 MS.gene01492:CDS 40.0%
AGAGTGGAAACAGAAAGCAA+AGG - chr2.2:68206616-68206635 MS.gene01492:CDS 40.0%
AGGTCGTTGCCTGATTATAA+TGG - chr2.2:68206636-68206655 MS.gene01492:CDS 40.0%
ATAGGGAATCATGCTGATGT+TGG + chr2.2:68205940-68205959 None:intergenic 40.0%
ATTGACAGAAATGGAGAGCA+AGG - chr2.2:68205748-68205767 MS.gene01492:CDS 40.0%
CAAGTGATGAAAGAGTTTGG+AGG - chr2.2:68206684-68206703 MS.gene01492:intron 40.0%
CAGTTACTGATCTTCAGAAG+CGG - chr2.2:68206868-68206887 MS.gene01492:CDS 40.0%
CATTCTCGACCGATATATGT+AGG - chr2.2:68205332-68205351 MS.gene01492:CDS 40.0%
CCATGTTTATGGGTGATGAT+AGG - chr2.2:68205294-68205313 MS.gene01492:CDS 40.0%
CCTATCATCACCCATAAACA+TGG + chr2.2:68205297-68205316 None:intergenic 40.0%
CTCTTTCATCACTTGCTTTC+TGG + chr2.2:68206679-68206698 None:intergenic 40.0%
CTGCAGTAGCCTACATATAT+CGG + chr2.2:68205344-68205363 None:intergenic 40.0%
GAGTACATACACTCCATCTT+AGG - chr2.2:68205968-68205987 MS.gene01492:CDS 40.0%
GGTCGTTGCCTGATTATAAT+GGG - chr2.2:68206637-68206656 MS.gene01492:CDS 40.0%
GTGATGCATGTGCGTTATAT+CGG - chr2.2:68206787-68206806 MS.gene01492:intron 40.0%
TACTAGAGTAAGGGATGCTT+TGG - chr2.2:68205613-68205632 MS.gene01492:CDS 40.0%
TCACATGCAGATCATCTACA+TGG + chr2.2:68205022-68205041 None:intergenic 40.0%
TGCCACTCAAAATGGTTTAG+TGG + chr2.2:68206741-68206760 None:intergenic 40.0%
! GCTGCTCTTGCTTTAAATGA+AGG - chr2.2:68206268-68206287 MS.gene01492:intron 40.0%
! GCTTTAAATGAAGGACAACC+AGG - chr2.2:68206277-68206296 MS.gene01492:intron 40.0%
!! CAAATTGGGCTTTGAGTTGT+TGG + chr2.2:68205817-68205836 None:intergenic 40.0%
ACACAGGCTTATCAAGGACA+AGG - chr2.2:68204989-68205008 MS.gene01492:CDS 45.0%
ACCTGGGGGAATTGAAGTTA+AGG - chr2.2:68206318-68206337 MS.gene01492:intron 45.0%
AGCATCACACAGGCTTATCA+AGG - chr2.2:68204983-68205002 MS.gene01492:CDS 45.0%
CAACTAACAACTCGGATAGG+CGG - chr2.2:68206005-68206024 MS.gene01492:CDS 45.0%
CAGATGCTTGGTAGATAGGT+AGG + chr2.2:68206145-68206164 None:intergenic 45.0%
CTAATACCAGGTGCATTCCA+CGG + chr2.2:68206433-68206452 None:intergenic 45.0%
GCTCTTAGTGCAAAGACAGA+AGG - chr2.2:68206358-68206377 MS.gene01492:intron 45.0%
GCTGAAGAGATCCTACTACA+TGG - chr2.2:68206707-68206726 MS.gene01492:intron 45.0%
GTTTATGGGTGATGATAGGG+TGG - chr2.2:68205298-68205317 MS.gene01492:CDS 45.0%
TCATGCTTAGGCACAGCTAA+TGG + chr2.2:68205397-68205416 None:intergenic 45.0%
TCCTAGCAAACTGCAGATCA+AGG + chr2.2:68205049-68205068 None:intergenic 45.0%
TCCTTAACTTCAATTCCCCC+AGG + chr2.2:68206322-68206341 None:intergenic 45.0%
TCTTGAGGGGGAGACTATTA+GGG - chr2.2:68206557-68206576 MS.gene01492:CDS 45.0%
TGCAAAGAAGAAGCAGGAGA+AGG + chr2.2:68205155-68205174 None:intergenic 45.0%
TGCATGTGCGTTATATCGGT+TGG - chr2.2:68206791-68206810 MS.gene01492:intron 45.0%
TGCTTTCTTACAGCTACCCT+TGG + chr2.2:68204967-68204986 None:intergenic 45.0%
TGGTTGTGGATCCATGTAGT+AGG + chr2.2:68206721-68206740 None:intergenic 45.0%
TTAATGGGAAGAAGAGCTCC+AGG - chr2.2:68206826-68206845 MS.gene01492:intron 45.0%
TTCTTGAGGGGGAGACTATT+AGG - chr2.2:68206556-68206575 MS.gene01492:CDS 45.0%
TTTACTGGGAGCTCCTAAGA+TGG + chr2.2:68205984-68206003 None:intergenic 45.0%
TTTGAACCTAGGAAAGCGGA+AGG + chr2.2:68206175-68206194 None:intergenic 45.0%
! CGTTGCCTGATTATAATGGG+CGG - chr2.2:68206640-68206659 MS.gene01492:CDS 45.0%
! TATACTGCTTTCAGAGGCAC+AGG - chr2.2:68206088-68206107 MS.gene01492:intron 45.0%
! TCCTTGATCTGCAGTTTGCT+AGG - chr2.2:68205045-68205064 MS.gene01492:CDS 45.0%
!! AATCATGCTGATGTTGGCTC+TGG + chr2.2:68205934-68205953 None:intergenic 45.0%
!! GCTGTAAGAAAGCATCACAC+AGG - chr2.2:68204973-68204992 MS.gene01492:CDS 45.0%
!! GTTGCCTGATTATAATGGGC+GGG - chr2.2:68206641-68206660 MS.gene01492:CDS 45.0%
!! TCTCGAAGAGCATTTGAGAG+TGG - chr2.2:68206600-68206619 MS.gene01492:CDS 45.0%
!! TGATCTGCAGTTTGCTAGGA+AGG - chr2.2:68205049-68205068 MS.gene01492:CDS 45.0%
!! TTGCCTGATTATAATGGGCG+GGG - chr2.2:68206642-68206661 MS.gene01492:CDS 45.0%
ACACAAGTTCAACCCTTCCG+CGG + chr2.2:68206224-68206243 None:intergenic 50.0%
ACCTAATGCCAAGGCTGACA+TGG - chr2.2:68206953-68206972 MS.gene01492:CDS 50.0%
ACCTGCTGCAAAGAAGAAGC+AGG + chr2.2:68205161-68205180 None:intergenic 50.0%
AGGAGAAGGCTCATTGAGCT+CGG + chr2.2:68205141-68205160 None:intergenic 50.0%
AGGGCAGATGCTTGGTAGAT+AGG + chr2.2:68206149-68206168 None:intergenic 50.0%
CAGAGCCAAACCTAATGCCA+AGG - chr2.2:68206944-68206963 MS.gene01492:CDS 50.0%
CATCCCCGCCCATTATAATC+AGG + chr2.2:68206648-68206667 None:intergenic 50.0%
CCTAATGCCAAGGCTGACAT+GGG - chr2.2:68206954-68206973 MS.gene01492:CDS 50.0%
GTCAGCCTTGGCATTAGGTT+TGG + chr2.2:68206952-68206971 None:intergenic 50.0%
TCCTGCTTCTTCTTTGCAGC+AGG - chr2.2:68205157-68205176 MS.gene01492:CDS 50.0%
TTCACCAGATGCTTCGTGAG+TGG - chr2.2:68205111-68205130 MS.gene01492:CDS 50.0%
!! AGGCACAGCTAATGGACTAG+TGG + chr2.2:68205389-68205408 None:intergenic 50.0%
!! CTGATTATAATGGGCGGGGA+TGG - chr2.2:68206646-68206665 MS.gene01492:CDS 50.0%
AACACCACCCATGTCAGCCT+TGG + chr2.2:68206964-68206983 None:intergenic 55.0%
AAGTCTCCGTGGAATGCACC+TGG - chr2.2:68206424-68206443 MS.gene01492:intron 55.0%
AATGCCAAGGCTGACATGGG+TGG - chr2.2:68206957-68206976 MS.gene01492:CDS 55.0%
ACTGTTCAAGACCCGCGGAA+GGG - chr2.2:68206209-68206228 MS.gene01492:intron 55.0%
AGGGGGAGACTATTAGGGTG+TGG - chr2.2:68206562-68206581 MS.gene01492:CDS 55.0%
ATAGCCCCAGTTCTACGACC+TGG - chr2.2:68206301-68206320 MS.gene01492:intron 55.0%
ATTCCCCCAGGTCGTAGAAC+TGG + chr2.2:68206310-68206329 None:intergenic 55.0%
CACAAGTTCAACCCTTCCGC+GGG + chr2.2:68206223-68206242 None:intergenic 55.0%
CCAGATGCTTCGTGAGTGGA+AGG - chr2.2:68205115-68205134 MS.gene01492:CDS 55.0%
CCCATGTCAGCCTTGGCATT+AGG + chr2.2:68206957-68206976 None:intergenic 55.0%
CTAGGAAAGCGGAAGGAGGA+GGG + chr2.2:68206168-68206187 None:intergenic 55.0%
GAACCTAGGAAAGCGGAAGG+AGG + chr2.2:68206172-68206191 None:intergenic 55.0%
GAAGCGCGACATCCACACTA+CGG + chr2.2:68205079-68205098 None:intergenic 55.0%
GCTACTGCAGCTCTGTGAAG+AGG - chr2.2:68205354-68205373 MS.gene01492:CDS 55.0%
TAGCCCCAGTTCTACGACCT+GGG - chr2.2:68206302-68206321 MS.gene01492:intron 55.0%
TAGGAAGGAGAGCCGTAGTG+TGG - chr2.2:68205064-68205083 MS.gene01492:CDS 55.0%
TGTGGATGTCGCGCTTCTTG+AGG - chr2.2:68205082-68205101 MS.gene01492:CDS 55.0%
TTCCCCCAGGTCGTAGAACT+GGG + chr2.2:68206309-68206328 None:intergenic 55.0%
TTGGGACTGTTCAAGACCCG+CGG - chr2.2:68206204-68206223 MS.gene01492:intron 55.0%
! CAGAGGCACAGGCTTTAGTG+AGG - chr2.2:68206099-68206118 MS.gene01492:intron 55.0%
! CCTTCCACTCACGAAGCATC+TGG + chr2.2:68205118-68205137 None:intergenic 55.0%
! GGCACAGGCTTTAGTGAGGA+TGG - chr2.2:68206103-68206122 MS.gene01492:intron 55.0%
AGCCCCAGTTCTACGACCTG+GGG - chr2.2:68206303-68206322 MS.gene01492:intron 60.0%
CATCCCAGAATGCGAGGGAG+CGG - chr2.2:68206393-68206412 MS.gene01492:intron 60.0%
CCTAGGAAAGCGGAAGGAGG+AGG + chr2.2:68206169-68206188 None:intergenic 60.0%
CCTCCTCCTTCCGCTTTCCT+AGG - chr2.2:68206166-68206185 MS.gene01492:intron 60.0%
CGGCAACTGCAAAGTCTCCG+TGG - chr2.2:68206413-68206432 MS.gene01492:intron 60.0%
CGTAGAACTGGGGCTATGCC+TGG + chr2.2:68206298-68206317 None:intergenic 60.0%
GAAGGAGGAGGGCAGATGCT+TGG + chr2.2:68206157-68206176 None:intergenic 60.0%
GACTGTTCAAGACCCGCGGA+AGG - chr2.2:68206208-68206227 MS.gene01492:intron 60.0%
GTCGGCATCCCAGAATGCGA+GGG - chr2.2:68206388-68206407 MS.gene01492:intron 60.0%
TCCCCCAGGTCGTAGAACTG+GGG + chr2.2:68206308-68206327 None:intergenic 60.0%
TGTCGGCATCCCAGAATGCG+AGG - chr2.2:68206387-68206406 MS.gene01492:intron 60.0%
TTGCCGCTCCCTCGCATTCT+GGG + chr2.2:68206399-68206418 None:intergenic 60.0%
GCCCCAGTTCTACGACCTGG+GGG - chr2.2:68206304-68206323 MS.gene01492:intron 65.0%
GTTGCCGCTCCCTCGCATTC+TGG + chr2.2:68206400-68206419 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 68204957 68207052 68204957 ID=MS.gene01492
chr2.2 mRNA 68204957 68207052 68204957 ID=MS.gene01492.t1;Parent=MS.gene01492
chr2.2 exon 68206831 68207052 68206831 ID=MS.gene01492.t1.exon1;Parent=MS.gene01492.t1
chr2.2 CDS 68206831 68207052 68206831 ID=cds.MS.gene01492.t1;Parent=MS.gene01492.t1
chr2.2 exon 68206544 68206693 68206544 ID=MS.gene01492.t1.exon2;Parent=MS.gene01492.t1
chr2.2 CDS 68206544 68206693 68206544 ID=cds.MS.gene01492.t1;Parent=MS.gene01492.t1
chr2.2 exon 68205564 68206074 68205564 ID=MS.gene01492.t1.exon3;Parent=MS.gene01492.t1
chr2.2 CDS 68205564 68206074 68205564 ID=cds.MS.gene01492.t1;Parent=MS.gene01492.t1
chr2.2 exon 68204957 68205471 68204957 ID=MS.gene01492.t1.exon4;Parent=MS.gene01492.t1
chr2.2 CDS 68204957 68205471 68204957 ID=cds.MS.gene01492.t1;Parent=MS.gene01492.t1
Gene Sequence

>MS.gene01492

ATGATTTCCAAGGGTAGCTGTAAGAAAGCATCACACAGGCTTATCAAGGACAAGGCAAAGAACCATGTAGATGATCTGCATGTGATGTTCCTTGATCTGCAGTTTGCTAGGAAGGAGAGCCGTAGTGTGGATGTCGCGCTTCTTGAGGAGCAAGTTCACCAGATGCTTCGTGAGTGGAAGGCCGAGCTCAATGAGCCTTCTCCTGCTTCTTCTTTGCAGCAGGTAAGCTCAGAATAGTTCTCCTTAACTTTAATATGCAGATTTAATTGTGGATTTGTGATGGACACATGTAAACTTGAATGGCAATATTTGTGGCAAAAACAATGATTTGAGTTTGCCATGTTTATGGGTGATGATAGGGTGGCAGTCTTCGATCATTCTCGACCGATATATGTAGGCTACTGCAGCTCTGTGAAGAGGAAGATGATGCCACTAGTCCATTAGCTGTGCCTAAGCATGAACCTAATGATCAGAATATGCAGACTGAAGCTAAGATGACGTTTCAAGAAGTCTGTTCCTTTCTCCTCTTCAGTGATTATTCATACATCTTTGTGATTTGATCATAACTGGCATAGTTTTTATTTTTTCTGTAGTATTGGCAGTCTAAAATATTGATTTGAAGCTTCTTTTTCTTTATTGCATTATTTTAATTCATATACTAGAGTAAGGGATGCTTTGGAATGTATGATATCTTCTTTTAATGCAAACAGAAAAATATTATAAAGTGTTGTATTGTTTTTTATATGTGGTAGCCTTTTCTCTAAAAAATAAAATTTAATCTTTTATTTTCAATTGACAGAAATGGAGAGCAAGGATTTGATGGTTCAGTCTTTCCTTAGTTAATACCAATTTTCTCACCAACAACTCAAAGCCCAATTTGTTCTTATGCATCATAGTTTTAATCATTATTTCAATGCTTGTCAATATTTTGATCTCACATATGATTGTAACAAGTTTCTTGGTTTAAATTTAAACCAGAGCCAACATCAGCATGATTCCCTATTAATGGATGAGTACATACACTCCATCTTAGGAGCTCCCAGTAAATCAACTAACAACTCGGATAGGCGGCCTAATTTTGAATCAAAATGTCGTCAATTTGATTTAAATGAAGATTTTAATCACAACTGTTATACTGCTTTCAGAGGCACAGGCTTTAGTGAGGATGGTGTTGTTCCTTATATACCTACCTATCTACCAAGCATCTGCCCTCCTCCTTCCGCTTTCCTAGGTTCAAAATGTGCACTTTGGGACTGTTCAAGACCCGCGGAAGGGTTGAACTTGTGTCAAGACTATTGCAGTAGTTTTCATGCTGCTCTTGCTTTAAATGAAGGACAACCAGGCATAGCCCCAGTTCTACGACCTGGGGGAATTGAAGTTAAGGATAATTTACTGTTGGCTGCTCTTAGTGCAAAGACAGAAGGAAAAGATGTCGGCATCCCAGAATGCGAGGGAGCGGCAACTGCAAAGTCTCCGTGGAATGCACCTGGTATTAGAATGTAGAATGCTGAGTTTACCTATTAAACTATTTATGTGTTTATTGAGTATAAAAGTTGAGAAGAGTGTTCTTTTTTGTTGCAGAGCTCTTTGATCTTTTTGTTCTTGAGGGGGAGACTATTAGGGTGTGGCTTTTCTTTGATAAGTCTCGAAGAGCATTTGAGAGTGGAAACAGAAAGCAAAGGTCGTTGCCTGATTATAATGGGCGGGGATGGCATGAATCCAGAAAGCAAGTGATGAAAGAGTTTGGAGGGCTGAAGAGATCCTACTACATGGATCCACAACCACTAAACCATTTTGAGTGGCATCTTTATGAGTATGAAATTAGCAAGTGTGATGCATGTGCGTTATATCGGTTGGAACTAAAGCTCGTTAATGGGAAGAAGAGCTCCAGGACAAAGATAACAAATGATTCAGTTACTGATCTTCAGAAGCGGATAAGAAGACTCTCTGCCGAGTTTCCCTATGATAACAGACATTCTGCTAAGGGCAGAGCCAAACCTAATGCCAAGGCTGACATGGGTGGTGTTTATACAGCTTCAAACAATGCACCATCACCATATGACTATCTTGTTGAGAGCACAATCGCTATTATGTGA
Protein sequence

>MS.gene01492.t1

MISKGSCKKASHRLIKDKAKNHVDDLHVMFLDLQFARKESRSVDVALLEEQVHQMLREWKAELNEPSPASSLQQGGSLRSFSTDICRLLQLCEEEDDATSPLAVPKHEPNDQNMQTEAKMTFQESQHQHDSLLMDEYIHSILGAPSKSTNNSDRRPNFESKCRQFDLNEDFNHNCYTAFRGTGFSEDGVVPYIPTYLPSICPPPSAFLGSKCALWDCSRPAEGLNLCQDYCSSFHAALALNEGQPGIAPVLRPGGIEVKDNLLLAALSAKTEGKDVGIPECEGAATAKSPWNAPELFDLFVLEGETIRVWLFFDKSRRAFESGNRKQRSLPDYNGRGWHESRKQVMKEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDACALYRLELKLVNGKKSSRTKITNDSVTDLQKRIRRLSAEFPYDNRHSAKGRAKPNAKADMGGVYTASNNAPSPYDYLVESTIAIM