AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014928

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014928.t1 MTR_3g105710 97.931 290 6 0 1 290 1 290 0.0 592
MS.gene014928.t1 MTR_1g013450 54.717 318 114 7 1 290 1 316 1.21e-106 313
MS.gene014928.t1 MTR_4g128930 51.506 332 100 11 4 280 20 345 1.05e-89 271
MS.gene014928.t1 MTR_7g018170 63.043 92 34 0 3 94 23 114 1.95e-37 137
MS.gene014928.t1 MTR_7g018170 71.429 70 9 2 231 289 326 395 6.38e-23 97.8
MS.gene014928.t1 MTR_5g021580 50.602 83 33 1 5 79 4 86 1.23e-20 87.4
MS.gene014928.t1 MTR_5g021580 50.602 83 33 1 5 79 4 86 1.29e-20 87.4
MS.gene014928.t1 MTR_5g069480 43.333 90 51 0 5 94 4 93 2.55e-19 86.3
MS.gene014928.t1 MTR_5g069480 43.333 90 51 0 5 94 4 93 3.06e-19 87.4
MS.gene014928.t1 MTR_1g023260 43.299 97 45 1 6 92 5 101 6.65e-19 84.7
MS.gene014928.t1 MTR_1g023260 43.299 97 45 1 6 92 5 101 7.07e-19 82.8
MS.gene014928.t1 MTR_2g073370 44.792 96 44 1 6 92 5 100 1.41e-18 84.0
MS.gene014928.t1 MTR_4g067320 43.750 96 45 1 6 92 5 100 1.45e-18 83.2
MS.gene014928.t1 MTR_4g067320 43.750 96 45 1 6 92 5 100 1.47e-18 83.2
MS.gene014928.t1 MTR_2g099010 42.708 96 46 1 6 92 5 100 2.09e-17 80.1
MS.gene014928.t1 MTR_2g099010 42.708 96 46 1 6 92 5 100 2.10e-17 80.1
MS.gene014928.t1 MTR_4g071200 39.175 97 49 1 6 92 5 101 6.89e-17 78.2
MS.gene014928.t1 MTR_3g117320 38.144 97 50 1 6 92 5 101 7.86e-17 78.2
MS.gene014928.t1 MTR_7g108150 39.326 89 53 1 6 94 20 107 4.21e-16 77.8
MS.gene014928.t1 MTR_3g082630 39.216 102 61 1 5 106 4 104 4.58e-16 78.2
MS.gene014928.t1 MTR_3g082630 44.872 78 40 1 202 279 327 401 4.23e-11 63.5
MS.gene014928.t1 MTR_3g034680 61.702 47 18 0 51 97 12 58 1.32e-15 71.2
MS.gene014928.t1 MTR_2g088900 45.122 82 45 0 5 86 100 181 8.11e-15 74.7
MS.gene014928.t1 MTR_2g088900 38.318 107 46 2 189 279 411 513 5.43e-12 66.2
MS.gene014928.t1 MTR_3g113070 38.298 94 47 1 6 88 5 98 1.23e-14 72.0
MS.gene014928.t1 MTR_7g083540 44.444 72 40 0 6 77 5 76 1.79e-13 70.5
MS.gene014928.t1 MTR_1g109350 39.189 74 45 0 4 77 3 76 1.89e-12 67.0
MS.gene014928.t1 MTR_1g110870 61.818 55 17 1 224 274 370 424 3.94e-12 66.6
MS.gene014928.t1 MTR_8g104190 70.455 44 13 0 232 275 358 401 5.83e-12 65.9
MS.gene014928.t1 MTR_3g092780 49.231 65 32 1 219 283 576 639 8.51e-12 65.9
MS.gene014928.t1 MTR_3g092780 49.231 65 32 1 219 283 577 640 8.76e-12 65.9
MS.gene014928.t1 MTR_5g072780 66.667 45 15 0 230 274 172 216 9.03e-12 63.5
MS.gene014928.t1 MTR_3g092780 49.231 65 32 1 219 283 617 680 9.13e-12 65.9
MS.gene014928.t1 MTR_3g092780 49.231 65 32 1 219 283 618 681 9.22e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014928.t1 AT5G24930 52.267 375 79 13 1 289 1 361 1.72e-95 286
MS.gene014928.t1 AT2G24790 53.767 292 98 10 2 277 4 274 1.72e-93 278
MS.gene014928.t1 AT5G57660 42.775 346 131 10 2 289 18 354 5.49e-74 231
MS.gene014928.t1 AT3G02380 40.058 342 142 9 3 289 13 346 2.77e-72 226
MS.gene014928.t1 AT5G15850 41.499 347 142 8 3 289 9 354 4.31e-70 221
MS.gene014928.t1 AT5G15840 39.058 361 135 14 6 289 20 372 6.68e-65 208
MS.gene014928.t1 AT2G24790 55.367 177 58 5 2 171 4 166 3.52e-57 183
MS.gene014928.t1 AT5G15840 41.398 186 83 7 6 166 20 204 9.79e-37 132
MS.gene014928.t1 AT1G49130 28.435 313 176 10 4 280 19 319 6.17e-23 96.7
MS.gene014928.t1 AT1G49130 28.435 313 176 10 4 280 26 326 6.54e-23 96.7
MS.gene014928.t1 AT4G38960 35.570 149 74 3 5 138 4 145 3.41e-20 86.3
MS.gene014928.t1 AT4G38960 35.570 149 74 3 5 138 4 145 3.41e-20 86.3
MS.gene014928.t1 AT2G21320 49.398 83 34 1 5 79 4 86 5.86e-20 85.1
MS.gene014928.t1 AT1G78600 44.792 96 44 1 6 92 5 100 4.65e-19 85.5
MS.gene014928.t1 AT1G78600 42.017 119 56 3 6 111 5 123 5.02e-19 85.9
MS.gene014928.t1 AT2G47890 42.857 91 50 1 4 94 11 99 4.33e-18 82.8
MS.gene014928.t1 AT2G47890 42.857 91 50 1 4 94 11 99 4.85e-18 83.2
MS.gene014928.t1 AT2G47890 27.273 308 161 14 3 276 53 331 8.44e-14 70.9
MS.gene014928.t1 AT2G47890 42.857 91 50 1 4 94 11 99 6.27e-18 81.3
MS.gene014928.t1 AT1G06040 43.750 96 45 1 6 92 5 100 6.88e-18 81.6
MS.gene014928.t1 AT1G06040 43.750 96 45 1 6 92 5 100 1.04e-17 79.3
MS.gene014928.t1 AT1G75540 40.404 99 47 1 6 92 5 103 1.21e-17 82.0
MS.gene014928.t1 AT2G33500 42.697 89 51 0 6 94 12 100 3.02e-17 81.6
MS.gene014928.t1 AT2G33500 52.632 57 27 0 220 276 345 401 1.03e-12 68.2
MS.gene014928.t1 AT2G33500 42.697 89 51 0 6 94 12 100 3.03e-17 81.6
MS.gene014928.t1 AT2G33500 52.632 57 27 0 220 276 344 400 1.08e-12 68.2
MS.gene014928.t1 AT2G31380 34.177 158 87 4 6 153 5 155 1.30e-16 77.8
MS.gene014928.t1 AT1G28050 41.573 89 52 0 6 94 9 97 4.26e-16 78.2
MS.gene014928.t1 AT1G28050 56.000 50 22 0 228 277 381 430 8.87e-11 62.4
MS.gene014928.t1 AT5G48250 38.043 92 55 1 5 94 4 95 1.10e-14 73.9
MS.gene014928.t1 AT3G07650 45.205 73 40 0 5 77 4 76 3.10e-14 72.4
MS.gene014928.t1 AT3G07650 58.333 48 20 0 232 279 315 362 9.29e-11 62.4
MS.gene014928.t1 AT3G07650 45.205 73 40 0 5 77 4 76 3.10e-14 72.4
MS.gene014928.t1 AT3G07650 58.333 48 20 0 232 279 315 362 9.29e-11 62.4
MS.gene014928.t1 AT3G07650 45.205 73 40 0 5 77 4 76 3.10e-14 72.4
MS.gene014928.t1 AT3G07650 58.333 48 20 0 232 279 315 362 9.29e-11 62.4
MS.gene014928.t1 AT3G07650 45.205 73 40 0 5 77 4 76 3.10e-14 72.4
MS.gene014928.t1 AT3G07650 58.333 48 20 0 232 279 315 362 9.29e-11 62.4
MS.gene014928.t1 AT4G10240 33.714 175 81 7 6 165 5 159 4.28e-14 68.9
MS.gene014928.t1 AT4G39070 37.755 98 51 1 5 92 4 101 1.72e-13 68.9
MS.gene014928.t1 AT1G73870 55.556 63 27 1 213 275 327 388 2.39e-13 70.1
MS.gene014928.t1 AT4G15250 40.476 84 50 0 6 89 5 88 4.64e-13 68.9
MS.gene014928.t1 AT1G68190 38.824 85 50 1 4 88 41 123 6.51e-13 68.9
MS.gene014928.t1 AT1G68190 38.824 85 50 1 4 88 12 94 7.76e-13 68.6
MS.gene014928.t1 AT1G68190 38.824 85 50 1 4 88 12 94 7.76e-13 68.6
MS.gene014928.t1 AT1G25440 36.029 136 72 5 158 286 288 415 4.86e-12 66.2
MS.gene014928.t1 AT3G21880 38.202 89 53 1 6 94 5 91 1.39e-11 64.7
MS.gene014928.t1 AT3G21880 38.202 89 53 1 6 94 9 95 1.40e-11 64.7
MS.gene014928.t1 AT3G21880 38.202 89 53 1 6 94 9 95 1.40e-11 64.7
MS.gene014928.t1 AT5G14370 63.043 46 17 0 232 277 294 339 1.80e-11 64.3
MS.gene014928.t1 AT4G25990 60.870 46 18 0 232 277 341 386 2.34e-11 64.3
MS.gene014928.t1 AT1G68520 68.182 44 14 0 232 275 357 400 2.43e-11 64.3

Find 74 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCAGTTGACTCCATTTC+TGG 0.143468 3.1:-83490539 MS.gene014928:CDS
GAAACTAGGCCTAGGATTAA+AGG 0.280004 3.1:-83490581 MS.gene014928:CDS
CCGCAGAGGAAGGCGGAGTC+AGG 0.296878 3.1:+83491413 None:intergenic
TTCCGAAGCTATTCCGTTCA+TGG 0.298068 3.1:-83491042 MS.gene014928:CDS
AGGCTAGGGTTATGAGGTAT+AGG 0.358381 3.1:-83490667 MS.gene014928:CDS
GACGGTGTTGTTCCCGTTCA+TGG 0.369225 3.1:-83490987 MS.gene014928:CDS
GCAAACCTCCCTTTAATCCT+AGG 0.392261 3.1:+83490572 None:intergenic
CCGTTCATGGATCTCGATTA+CGG 0.395344 3.1:-83491029 MS.gene014928:CDS
TTTGTTAGCGGCGTGGACTT+TGG 0.416071 3.1:+83491379 None:intergenic
GGATCGAAGTTGCCATGAAC+GGG 0.430806 3.1:+83490975 None:intergenic
TGGCGGCGGATCGTGAGGCT+AGG 0.437396 3.1:-83490682 MS.gene014928:CDS
GATTCGAAGAACGGAGTAAC+GGG 0.439450 3.1:+83491203 None:intergenic
AGATATCGAACTGTGGTTAC+GGG 0.444139 3.1:-83490709 MS.gene014928:CDS
GAGATATCGAACTGTGGTTA+CGG 0.445942 3.1:-83490710 MS.gene014928:CDS
AACGATGCCGTATCCAGAAA+TGG 0.452434 3.1:+83490526 None:intergenic
GATGAGTTGAGATCTGCTTT+CGG 0.461772 3.1:+83491083 None:intergenic
GAGAGTGACGCGAGGGTGAC+GGG 0.479132 3.1:+83491349 None:intergenic
TCCGACACGGTGTTCCCGTC+AGG 0.479338 3.1:+83490731 None:intergenic
TTTAACAGAGTGAGAAGTGT+TGG 0.480554 3.1:+83491181 None:intergenic
GGCTAGGGTTATGAGGTATA+GGG 0.482522 3.1:-83490666 MS.gene014928:CDS
TGGTTACGGGACGGTGGCGG+CGG 0.488159 3.1:-83490696 MS.gene014928:CDS
AAACTAGGCCTAGGATTAAA+GGG 0.490422 3.1:-83490580 MS.gene014928:CDS
AGTGTGGATGTCACGGTCAC+AGG 0.492186 3.1:+83491259 None:intergenic
ATCCATGAACGGAATAGCTT+CGG 0.492715 3.1:+83491040 None:intergenic
TTATGAGGTATAGGGAGAAG+AGG 0.496368 3.1:-83490658 MS.gene014928:CDS
TTCTTGTAAGCTGAAACAAA+TGG 0.496560 3.1:+83490954 None:intergenic
GTTGACTCCATTTCTGGATA+CGG 0.500668 3.1:-83490533 MS.gene014928:CDS
GGCGGCGGATCGTGAGGCTA+GGG 0.502731 3.1:-83490681 MS.gene014928:CDS
TTAGGTATCGTCTTCGTCGA+TGG 0.503016 3.1:-83490768 MS.gene014928:intron
GTAAAGCATATGCGGAAACT+AGG 0.510714 3.1:-83490595 MS.gene014928:CDS
CTGTGGTTACGGGACGGTGG+CGG 0.513006 3.1:-83490699 MS.gene014928:CDS
CGCAGAGGAAGGCGGAGTCA+GGG 0.518288 3.1:+83491414 None:intergenic
TCGTCTTCGTCGATGGAGGT+TGG 0.523017 3.1:-83490761 MS.gene014928:CDS
AGGTTGGAGTTGTTCCTGAC+GGG 0.524585 3.1:-83490745 MS.gene014928:CDS
ATGAAGCTGAAGCTGCTTCG+TGG 0.533741 3.1:-83491118 MS.gene014928:CDS
GGATTCGAAGAACGGAGTAA+CGG 0.536432 3.1:+83491202 None:intergenic
GCTTTACACGTGACATGTGC+AGG 0.538227 3.1:+83491305 None:intergenic
AGAGAGTGACGCGAGGGTGA+CGG 0.539503 3.1:+83491348 None:intergenic
GGCGTGGACTTTGGAGTCAC+AGG 0.543388 3.1:+83491388 None:intergenic
GTCACAGGCGCCGCAGAGGA+AGG 0.545693 3.1:+83491403 None:intergenic
TCGGAATCAGAGAAAAGATA+AGG 0.547155 3.1:+83491059 None:intergenic
GACGGTGGCGGCGGATCGTG+AGG 0.549105 3.1:-83490687 MS.gene014928:CDS
TGGATCGAAGTTGCCATGAA+CGG 0.558189 3.1:+83490974 None:intergenic
CGCTCGTGACGTGCGGCGAG+AGG 0.558417 3.1:+83491230 None:intergenic
GCAGTAGAGAGTAGCGGTGG+CGG 0.563031 3.1:+83491439 None:intergenic
GAAGTGTTGGATTCGAAGAA+CGG 0.565969 3.1:+83491194 None:intergenic
GATGCAGAGAGAAGCTGCAT+CGG 0.576026 3.1:+83491283 None:intergenic
CATATGCGGAAACTAGGCCT+AGG 0.577094 3.1:-83490589 MS.gene014928:CDS
ACGGGAGGCGAGTTTGTTAG+CGG 0.583367 3.1:+83491367 None:intergenic
GGTATCGTCTTCGTCGATGG+AGG 0.585063 3.1:-83490765 MS.gene014928:CDS
ACAGGCGCCGCAGAGGAAGG+CGG 0.586506 3.1:+83491406 None:intergenic
GATTAGCAGTGTGGATGTCA+CGG 0.589251 3.1:+83491252 None:intergenic
CGCTTCTCGTAAAGCATATG+CGG 0.592961 3.1:-83490603 MS.gene014928:CDS
GAGGTTGGAGTTGTTCCTGA+CGG 0.607148 3.1:-83490746 MS.gene014928:CDS
GGGAACACGCTCGTGACGTG+CGG 0.610507 3.1:+83491223 None:intergenic
ATCGTGAGGCTAGGGTTATG+AGG 0.613658 3.1:-83490673 MS.gene014928:CDS
TGGAGTCACAGGCGCCGCAG+AGG 0.616423 3.1:+83491399 None:intergenic
AGGCGAGTTTGTTAGCGGCG+TGG 0.630051 3.1:+83491372 None:intergenic
TGACTAATCTGCGACTGTGA+CGG 0.630286 3.1:+83490897 None:intergenic
GCGGCAGTAGAGAGTAGCGG+TGG 0.638763 3.1:+83491436 None:intergenic
AGGGCGGCAGTAGAGAGTAG+CGG 0.646899 3.1:+83491433 None:intergenic
CGGCGAGAGGATTAGCAGTG+TGG 0.659805 3.1:+83491243 None:intergenic
AGAGGAAGGCGGAGTCAGGG+CGG 0.663446 3.1:+83491417 None:intergenic
AGTGACGCGAGGGTGACGGG+AGG 0.667459 3.1:+83491352 None:intergenic
CCTGACTCCGCCTTCCTCTG+CGG 0.671751 3.1:-83491413 MS.gene014928:CDS
ATCGAACTGTGGTTACGGGA+CGG 0.672790 3.1:-83490705 MS.gene014928:CDS
TCCTGACGGGAACACCGTGT+CGG 0.682213 3.1:-83490732 MS.gene014928:CDS
GAACTGTGGTTACGGGACGG+TGG 0.687113 3.1:-83490702 MS.gene014928:CDS
CTTCGCAGAGAGTGACGCGA+GGG 0.694593 3.1:+83491342 None:intergenic
CTAGGCCTAGGATTAAAGGG+AGG 0.700310 3.1:-83490577 MS.gene014928:CDS
ACTTCGCAGAGAGTGACGCG+AGG 0.710854 3.1:+83491341 None:intergenic
CCGTAATCGAGATCCATGAA+CGG 0.730276 3.1:+83491029 None:intergenic
ACAGTTCGATATCTCCGACA+CGG 0.744977 3.1:+83490718 None:intergenic
GTGTCGGAGATATCGAACTG+TGG 0.760977 3.1:-83490716 MS.gene014928:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTGTTGTGATTAATT+AGG - chr3.1:83491198-83491217 MS.gene014928:CDS 15.0%
!!! TAAGTTTGTTTTTATTGACA+TGG - chr3.1:83491139-83491158 MS.gene014928:CDS 20.0%
! GTAATTGAACATAAAAACGA+CGG - chr3.1:83490979-83490998 MS.gene014928:CDS 25.0%
TTCTTGTAAGCTGAAACAAA+TGG + chr3.1:83491033-83491052 None:intergenic 30.0%
AAACTAGGCCTAGGATTAAA+GGG - chr3.1:83491404-83491423 MS.gene014928:CDS 35.0%
TCGGAATCAGAGAAAAGATA+AGG + chr3.1:83490928-83490947 None:intergenic 35.0%
! TTTAACAGAGTGAGAAGTGT+TGG + chr3.1:83490806-83490825 None:intergenic 35.0%
AGATATCGAACTGTGGTTAC+GGG - chr3.1:83491275-83491294 MS.gene014928:CDS 40.0%
ATCCATGAACGGAATAGCTT+CGG + chr3.1:83490947-83490966 None:intergenic 40.0%
GAAACTAGGCCTAGGATTAA+AGG - chr3.1:83491403-83491422 MS.gene014928:CDS 40.0%
GAGATATCGAACTGTGGTTA+CGG - chr3.1:83491274-83491293 MS.gene014928:CDS 40.0%
GTAAAGCATATGCGGAAACT+AGG - chr3.1:83491389-83491408 MS.gene014928:CDS 40.0%
TTATGAGGTATAGGGAGAAG+AGG - chr3.1:83491326-83491345 MS.gene014928:CDS 40.0%
! GATGAGTTGAGATCTGCTTT+CGG + chr3.1:83490904-83490923 None:intergenic 40.0%
! GTTGACTCCATTTCTGGATA+CGG - chr3.1:83491451-83491470 MS.gene014928:CDS 40.0%
!! GAAGTGTTGGATTCGAAGAA+CGG + chr3.1:83490793-83490812 None:intergenic 40.0%
AACGATGCCGTATCCAGAAA+TGG + chr3.1:83491461-83491480 None:intergenic 45.0%
ACAGTTCGATATCTCCGACA+CGG + chr3.1:83491269-83491288 None:intergenic 45.0%
AGGCTAGGGTTATGAGGTAT+AGG - chr3.1:83491317-83491336 MS.gene014928:CDS 45.0%
CCGTAATCGAGATCCATGAA+CGG + chr3.1:83490958-83490977 None:intergenic 45.0%
CCGTTCATGGATCTCGATTA+CGG - chr3.1:83490955-83490974 MS.gene014928:CDS 45.0%
CGCTTCTCGTAAAGCATATG+CGG - chr3.1:83491381-83491400 MS.gene014928:CDS 45.0%
GATTAGCAGTGTGGATGTCA+CGG + chr3.1:83490735-83490754 None:intergenic 45.0%
GATTCGAAGAACGGAGTAAC+GGG + chr3.1:83490784-83490803 None:intergenic 45.0%
GCAAACCTCCCTTTAATCCT+AGG + chr3.1:83491415-83491434 None:intergenic 45.0%
GGATTCGAAGAACGGAGTAA+CGG + chr3.1:83490785-83490804 None:intergenic 45.0%
GGCTAGGGTTATGAGGTATA+GGG - chr3.1:83491318-83491337 MS.gene014928:CDS 45.0%
TGACTAATCTGCGACTGTGA+CGG + chr3.1:83491090-83491109 None:intergenic 45.0%
TGGATCGAAGTTGCCATGAA+CGG + chr3.1:83491013-83491032 None:intergenic 45.0%
TTCCGAAGCTATTCCGTTCA+TGG - chr3.1:83490942-83490961 MS.gene014928:CDS 45.0%
! GATGCAGTTGACTCCATTTC+TGG - chr3.1:83491445-83491464 MS.gene014928:CDS 45.0%
! TTAGGTATCGTCTTCGTCGA+TGG - chr3.1:83491216-83491235 MS.gene014928:CDS 45.0%
AGGTTGGAGTTGTTCCTGAC+GGG - chr3.1:83491239-83491258 MS.gene014928:CDS 50.0%
ATCGAACTGTGGTTACGGGA+CGG - chr3.1:83491279-83491298 MS.gene014928:CDS 50.0%
ATCGTGAGGCTAGGGTTATG+AGG - chr3.1:83491311-83491330 MS.gene014928:CDS 50.0%
ATGAAGCTGAAGCTGCTTCG+TGG - chr3.1:83490866-83490885 MS.gene014928:intron 50.0%
CATATGCGGAAACTAGGCCT+AGG - chr3.1:83491395-83491414 MS.gene014928:CDS 50.0%
CTAGGCCTAGGATTAAAGGG+AGG - chr3.1:83491407-83491426 MS.gene014928:CDS 50.0%
GAGGTTGGAGTTGTTCCTGA+CGG - chr3.1:83491238-83491257 MS.gene014928:CDS 50.0%
GATGCAGAGAGAAGCTGCAT+CGG + chr3.1:83490704-83490723 None:intergenic 50.0%
GCTTTACACGTGACATGTGC+AGG + chr3.1:83490682-83490701 None:intergenic 50.0%
GGATCGAAGTTGCCATGAAC+GGG + chr3.1:83491012-83491031 None:intergenic 50.0%
GTGTCGGAGATATCGAACTG+TGG - chr3.1:83491268-83491287 MS.gene014928:CDS 50.0%
TTTGTTAGCGGCGTGGACTT+TGG + chr3.1:83490608-83490627 None:intergenic 50.0%
AGTGTGGATGTCACGGTCAC+AGG + chr3.1:83490728-83490747 None:intergenic 55.0%
GGTATCGTCTTCGTCGATGG+AGG - chr3.1:83491219-83491238 MS.gene014928:CDS 55.0%
TCGTCTTCGTCGATGGAGGT+TGG - chr3.1:83491223-83491242 MS.gene014928:CDS 55.0%
!! ACGGGAGGCGAGTTTGTTAG+CGG + chr3.1:83490620-83490639 None:intergenic 55.0%
!! GACGGTGTTGTTCCCGTTCA+TGG - chr3.1:83490997-83491016 MS.gene014928:CDS 55.0%
ACTTCGCAGAGAGTGACGCG+AGG + chr3.1:83490646-83490665 None:intergenic 60.0%
AGAGAGTGACGCGAGGGTGA+CGG + chr3.1:83490639-83490658 None:intergenic 60.0%
AGGGCGGCAGTAGAGAGTAG+CGG + chr3.1:83490554-83490573 None:intergenic 60.0%
CTTCGCAGAGAGTGACGCGA+GGG + chr3.1:83490645-83490664 None:intergenic 60.0%
GAACTGTGGTTACGGGACGG+TGG - chr3.1:83491282-83491301 MS.gene014928:CDS 60.0%
GCAGTAGAGAGTAGCGGTGG+CGG + chr3.1:83490548-83490567 None:intergenic 60.0%
TCCTGACGGGAACACCGTGT+CGG - chr3.1:83491252-83491271 MS.gene014928:CDS 60.0%
! CGGCGAGAGGATTAGCAGTG+TGG + chr3.1:83490744-83490763 None:intergenic 60.0%
!! AGGCGAGTTTGTTAGCGGCG+TGG + chr3.1:83490615-83490634 None:intergenic 60.0%
!! GGCGTGGACTTTGGAGTCAC+AGG + chr3.1:83490599-83490618 None:intergenic 60.0%
AGAGGAAGGCGGAGTCAGGG+CGG + chr3.1:83490570-83490589 None:intergenic 65.0%
CCTGACTCCGCCTTCCTCTG+CGG - chr3.1:83490571-83490590 MS.gene014928:CDS 65.0%
CGCAGAGGAAGGCGGAGTCA+GGG + chr3.1:83490573-83490592 None:intergenic 65.0%
CTGTGGTTACGGGACGGTGG+CGG - chr3.1:83491285-83491304 MS.gene014928:CDS 65.0%
GAGAGTGACGCGAGGGTGAC+GGG + chr3.1:83490638-83490657 None:intergenic 65.0%
GCGGCAGTAGAGAGTAGCGG+TGG + chr3.1:83490551-83490570 None:intergenic 65.0%
GGGAACACGCTCGTGACGTG+CGG + chr3.1:83490764-83490783 None:intergenic 65.0%
TCCGACACGGTGTTCCCGTC+AGG + chr3.1:83491256-83491275 None:intergenic 65.0%
CCGCAGAGGAAGGCGGAGTC+AGG + chr3.1:83490574-83490593 None:intergenic 70.0%
GGCGGCGGATCGTGAGGCTA+GGG - chr3.1:83491303-83491322 MS.gene014928:CDS 70.0%
TGGCGGCGGATCGTGAGGCT+AGG - chr3.1:83491302-83491321 MS.gene014928:CDS 70.0%
! ACAGGCGCCGCAGAGGAAGG+CGG + chr3.1:83490581-83490600 None:intergenic 70.0%
! GTCACAGGCGCCGCAGAGGA+AGG + chr3.1:83490584-83490603 None:intergenic 70.0%
! TGGAGTCACAGGCGCCGCAG+AGG + chr3.1:83490588-83490607 None:intergenic 70.0%
! TGGTTACGGGACGGTGGCGG+CGG - chr3.1:83491288-83491307 MS.gene014928:CDS 70.0%
!! AGTGACGCGAGGGTGACGGG+AGG + chr3.1:83490635-83490654 None:intergenic 70.0%
CGCTCGTGACGTGCGGCGAG+AGG + chr3.1:83490757-83490776 None:intergenic 75.0%
! GACGGTGGCGGCGGATCGTG+AGG - chr3.1:83491297-83491316 MS.gene014928:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 83490514 83491492 83490514 ID=MS.gene014928
chr3.1 mRNA 83490514 83491492 83490514 ID=MS.gene014928.t1;Parent=MS.gene014928
chr3.1 exon 83490893 83491492 83490893 ID=MS.gene014928.t1.exon1;Parent=MS.gene014928.t1
chr3.1 CDS 83490893 83491492 83490893 ID=cds.MS.gene014928.t1;Parent=MS.gene014928.t1
chr3.1 exon 83490514 83490786 83490514 ID=MS.gene014928.t1.exon2;Parent=MS.gene014928.t1
chr3.1 CDS 83490514 83490786 83490514 ID=cds.MS.gene014928.t1;Parent=MS.gene014928.t1
Gene Sequence

>MS.gene014928

ATGGCTTCTAAACTCTGTGACTCATGCAAATCCGCCACCGCTACTCTCTACTGCCGCCCTGACTCCGCCTTCCTCTGCGGCGCCTGTGACTCCAAAGTCCACGCCGCTAACAAACTCGCCTCCCGTCACCCTCGCGTCACTCTCTGCGAAGTCTGCGAACAAGCACCTGCACATGTCACGTGTAAAGCCGATGCAGCTTCTCTCTGCATCACCTGTGACCGTGACATCCACACTGCTAATCCTCTCGCCGCACGTCACGAGCGTGTTCCCGTTACTCCGTTCTTCGAATCCAACACTTCTCACTCTGTTAAATCGCTTCAAAACAATAACAACAACTACGATGCTGTTAAAGATGAAGCTGAAGCTGCTTCGTGGTTGATCTCTGATCCGAAAGCAGATCTCAACTCATCTCCTTATCTTTTCTCTGATTCCGAAGCTATTCCGTTCATGGATCTCGATTACGGTGTAATTGAACATAAAAACGACGGTGTTGTTCCCGTTCATGGCAACTTCGATCCATTTGTTTCAGCTTACAAGAACAACAACGTGCACTTGCATACAGAGTTAGAAACACCGTCACAGTCGCAGATTAGTCAGAGTGTAAGAGATCTTAGATCTAAGATTCTAAGTTTGTTTTTATTGACATGGAAATATAATATTGATTAATATATATCTTACACTTATTTTTTTTGTTGTGATTAATTAGGTATCGTCTTCGTCGATGGAGGTTGGAGTTGTTCCTGACGGGAACACCGTGTCGGAGATATCGAACTGTGGTTACGGGACGGTGGCGGCGGATCGTGAGGCTAGGGTTATGAGGTATAGGGAGAAGAGGAAGAATAGAAGATTCGAGAAGACGATTCGTTACGCTTCTCGTAAAGCATATGCGGAAACTAGGCCTAGGATTAAAGGGAGGTTTGCAAAACGCACTGATGCAGTTGACTCCATTTCTGGATACGGCATCGTTCCCACTTGTTGA
Protein sequence

>MS.gene014928.t1

MASKLCDSCKSATATLYCRPDSAFLCGACDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHTANPLAARHERVPVTPFFESNTSHSVKSLQNNNNNYDAVKDEAEAASWLISDPKADLNSSPYLFSDSEAIPFMDLDYGVIEHKNDGVVPVHGNFDPFVSAYKNNNVHLHTELETPSQSQISQSVSSSSMEVGVVPDGNTVSEISNCGYGTVAADREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSISGYGIVPTC