AlfalfaGEDB | MS.gene014934

M. sativa cultivar XinJiangDaYe / MS.gene014934

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014934.t1	RHN82037.1	89.7	126	13	0	1	126	364	489	1.90E-61	245

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014934.t1	Q39202	39.7	121	64	1	2	122	698	809	8.9e-23	107.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014934.t1	A0A072W0U2	89.7	126	13	0	1	126	549	674	1.4e-61	245.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014934.t1	MTR_1g104555	89.683	126	13	0	1	126	549	674	1.25e-76	239
MS.gene014934.t1	MTR_5g006160	55.645	124	45	2	1	124	657	770	1.22e-41	146
MS.gene014934.t1	MTR_2g067970	43.802	121	63	3	2	122	771	886	1.10e-29	112
MS.gene014934.t1	MTR_5g013070	42.149	121	66	2	2	122	678	794	1.06e-28	109
MS.gene014934.t1	MTR_2g067990	44.628	121	62	2	2	122	883	998	1.30e-28	109
MS.gene014934.t1	MTR_2g067980	44.628	121	62	2	2	122	907	1022	2.29e-28	108
MS.gene014934.t1	MTR_2g068650	43.802	121	63	2	2	122	621	736	5.62e-28	107
MS.gene014934.t1	MTR_5g013130	41.322	121	67	2	2	122	675	791	1.73e-27	106
MS.gene014934.t1	MTR_8g011370	42.149	121	66	1	2	122	688	804	1.77e-25	100
MS.gene014934.t1	MTR_8g011410	41.880	117	64	1	2	118	690	802	9.30e-23	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014934.t1	AT4G32300	35.484	124	69	3	2	122	659	774	3.27e-17	77.0
MS.gene014934.t1	AT5G03140	34.959	123	79	1	1	123	537	658	8.99e-17	75.5
MS.gene014934.t1	AT1G34300	35.484	124	68	3	2	121	650	765	1.18e-16	75.5
MS.gene014934.t1	AT1G60800	29.565	115	76	1	1	115	401	510	2.33e-15	71.6
MS.gene014934.t1	AT1G60800	29.565	115	76	1	1	115	468	577	2.46e-15	71.6
MS.gene014934.t1	AT1G71830	31.304	115	75	1	1	115	469	579	3.56e-15	70.9
MS.gene014934.t1	AT1G34210	31.304	115	75	1	1	115	472	582	3.73e-15	70.9
MS.gene014934.t1	AT1G34210	31.304	115	75	1	1	115	472	582	3.73e-15	70.9
MS.gene014934.t1	AT4G33430	32.174	115	74	1	1	115	503	613	6.47e-15	70.5
MS.gene014934.t1	AT4G33430	32.174	115	74	1	1	115	456	566	6.47e-15	70.1

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Find 28 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGATATCTACAGCTT+TGG	0.498218	3.3:+86943156	MS.gene014934:CDS
AAGGTGTTGCAGATGTCGGA+AGG	0.614948	3.3:+86943426	MS.gene014934:CDS
AAGTTGTTAATGATTTCATT+AGG	0.396201	3.3:+86943334	MS.gene014934:CDS
AGTGTTCCACCATTGTTTGA+TGG	0.394571	3.3:+86943462	MS.gene014934:CDS
ATGACATGATACTTATAGAT+TGG	0.369608	3.3:+86943256	MS.gene014934:CDS
ATGGCCTAATAATTGGATTA+GGG	0.442397	3.3:-86943395	None:intergenic
CAAGTTGAAGATGGAACAGA+AGG	0.575586	3.3:+86943228	MS.gene014934:CDS
CATTAACAACTTCAACATCA+TGG	0.537170	3.3:-86943323	None:intergenic
GAATGACTATGGTTGGACTG+TGG	0.741878	3.3:+86943364	MS.gene014934:CDS
GAATTGCATCAAGTTGAAGA+TGG	0.493224	3.3:+86943219	MS.gene014934:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGCCTAATAATTGGATTA+GGG	-	chr3.3:86943398-86943417	None:intergenic	30.0%
CATTAACAACTTCAACATCA+TGG	-	chr3.3:86943326-86943345	None:intergenic	30.0%
AAAGTGGATATCTACAGCTT+TGG	+	chr3.3:86943156-86943175	MS.gene014934:CDS	35.0%
GATGGCCTAATAATTGGATT+AGG	-	chr3.3:86943399-86943418	None:intergenic	35.0%
GCAATAGATGGCCTAATAAT+TGG	-	chr3.3:86943405-86943424	None:intergenic	35.0%
GTTCTATATTGGGCAAAAGA+GGG	+	chr3.3:86943279-86943298	MS.gene014934:CDS	35.0%
TAGGTTTGAGAGAATGACTA+TGG	+	chr3.3:86943353-86943372	MS.gene014934:CDS	35.0%
TATTAGGCCATCTATTGCAA+AGG	+	chr3.3:86943407-86943426	MS.gene014934:CDS	35.0%
TGTGCCCTAATCCAATTATT+AGG	+	chr3.3:86943391-86943410	MS.gene014934:CDS	35.0%
TTCTATATTGGGCAAAAGAG+GGG	+	chr3.3:86943280-86943299	MS.gene014934:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	86943108	86943497	86943108	ID=MS.gene014934
chr3.3	mRNA	86943108	86943497	86943108	ID=MS.gene014934.t1;Parent=MS.gene014934
chr3.3	exon	86943108	86943497	86943108	ID=MS.gene014934.t1.exon1;Parent=MS.gene014934.t1
chr3.3	CDS	86943108	86943497	86943108	ID=cds.MS.gene014934.t1;Parent=MS.gene014934.t1

Gene Sequence

>MS.gene014934

ATGGGATGTTTGGTACCAGAATGGCTCAAAAATGCACCTATCACTGCAAAAGTGGATATCTACAGCTTTGGTGTCATGTTGCTTGAAATCTTATTTTGTAGAAGGCACATTGAATTGCATCAAGTTGAAGATGGAACAGAAGGTGGTGATGACATGATACTTATAGATTGGGTTCTATATTGGGCAAAAGAGGGGAAACTAAGAGACATTCTTAGCCATGATGTTGAAGTTGTTAATGATTTCATTAGGTTTGAGAGAATGACTATGGTTGGACTGTGGTGCTTGTGCCCTAATCCAATTATTAGGCCATCTATTGCAAAGGTGTTGCAGATGTCGGAAGGAGATTTTGAAGTTAGTGTTCCACCATTGTTTGATGGAAAAATTTTGTAA

Protein sequence

>MS.gene014934.t1

MGCLVPEWLKNAPITAKVDIYSFGVMLLEILFCRRHIELHQVEDGTEGGDDMILIDWVLYWAKEGKLRDILSHDVEVVNDFIRFERMTMVGLWCLCPNPIIRPSIAKVLQMSEGDFEVSVPPLFDGKIL