Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014939.t1 | XP_003603254.2 | 95.3 | 922 | 23 | 1 | 1 | 902 | 1 | 922 | 0.00E+00 | 1685.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014939.t1 | Q3S4A7 | 56.9 | 939 | 320 | 15 | 1 | 902 | 5 | 895 | 2.9e-269 | 929.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014939.t1 | G7J964 | 95.3 | 922 | 23 | 1 | 1 | 902 | 1 | 922 | 0.0e+00 | 1685.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014939.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014939.t1 | MTR_3g105590 | 95.233 | 923 | 24 | 1 | 1 | 903 | 1 | 923 | 0.0 | 1810 |
| MS.gene014939.t1 | MTR_1g013360 | 68.347 | 992 | 215 | 18 | 1 | 903 | 5 | 986 | 0.0 | 1285 |
| MS.gene014939.t1 | MTR_1g014670 | 75.377 | 398 | 87 | 3 | 39 | 435 | 2 | 389 | 0.0 | 605 |
| MS.gene014939.t1 | MTR_3g085130 | 27.496 | 571 | 358 | 14 | 373 | 902 | 450 | 1005 | 3.88e-41 | 164 |
| MS.gene014939.t1 | MTR_8g080770 | 36.232 | 276 | 165 | 4 | 373 | 646 | 286 | 552 | 3.57e-39 | 157 |
| MS.gene014939.t1 | MTR_8g080770 | 36.232 | 276 | 165 | 4 | 373 | 646 | 395 | 661 | 5.19e-39 | 157 |
| MS.gene014939.t1 | MTR_3g085130 | 35.395 | 291 | 177 | 5 | 373 | 660 | 240 | 522 | 4.04e-38 | 154 |
| MS.gene014939.t1 | MTR_8g106150 | 34.564 | 298 | 174 | 5 | 373 | 652 | 143 | 437 | 1.08e-35 | 145 |
| MS.gene014939.t1 | MTR_8g106150 | 34.564 | 298 | 174 | 5 | 373 | 652 | 386 | 680 | 1.70e-35 | 146 |
| MS.gene014939.t1 | MTR_5g097410 | 34.043 | 282 | 169 | 7 | 373 | 646 | 620 | 892 | 3.33e-35 | 145 |
| MS.gene014939.t1 | MTR_4g031150 | 31.778 | 343 | 179 | 11 | 331 | 665 | 349 | 644 | 3.59e-34 | 141 |
| MS.gene014939.t1 | MTR_7g109150 | 34.247 | 292 | 145 | 8 | 375 | 663 | 349 | 596 | 9.19e-33 | 135 |
| MS.gene014939.t1 | MTR_8g075340 | 31.250 | 272 | 166 | 5 | 373 | 642 | 474 | 726 | 4.01e-27 | 119 |
| MS.gene014939.t1 | MTR_5g022470 | 32.014 | 278 | 168 | 5 | 373 | 648 | 512 | 770 | 1.32e-25 | 114 |
| MS.gene014939.t1 | MTR_5g022470 | 32.014 | 278 | 168 | 5 | 373 | 648 | 512 | 770 | 1.43e-25 | 114 |
| MS.gene014939.t1 | MTR_1g090850 | 28.571 | 315 | 184 | 11 | 344 | 646 | 363 | 648 | 8.15e-19 | 92.8 |
| MS.gene014939.t1 | MTR_1g087140 | 28.060 | 335 | 188 | 14 | 335 | 646 | 362 | 666 | 1.45e-17 | 88.6 |
| MS.gene014939.t1 | MTR_1g079790 | 26.531 | 196 | 128 | 5 | 331 | 515 | 327 | 517 | 6.89e-12 | 69.7 |
| MS.gene014939.t1 | MTR_1g079790 | 26.531 | 196 | 128 | 5 | 331 | 515 | 327 | 517 | 1.24e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014939.t1 | AT5G10720 | 56.369 | 942 | 320 | 15 | 1 | 902 | 5 | 895 | 0.0 | 996 |
| MS.gene014939.t1 | AT1G27320 | 37.545 | 277 | 158 | 5 | 373 | 646 | 453 | 717 | 1.84e-40 | 162 |
| MS.gene014939.t1 | AT5G10680 | 46.429 | 168 | 83 | 4 | 1 | 168 | 1 | 161 | 1.28e-38 | 144 |
| MS.gene014939.t1 | AT5G10680 | 46.429 | 168 | 83 | 4 | 1 | 168 | 1 | 161 | 1.28e-38 | 144 |
| MS.gene014939.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.34e-36 | 150 |
| MS.gene014939.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.34e-36 | 150 |
| MS.gene014939.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.34e-36 | 150 |
| MS.gene014939.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 452 | 731 | 1.34e-36 | 150 |
| MS.gene014939.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 464 | 743 | 1.55e-36 | 149 |
| MS.gene014939.t1 | AT2G01830 | 35.192 | 287 | 166 | 6 | 373 | 646 | 475 | 754 | 1.61e-36 | 149 |
| MS.gene014939.t1 | AT5G35750 | 36.879 | 282 | 160 | 8 | 373 | 646 | 590 | 861 | 1.19e-35 | 147 |
| MS.gene014939.t1 | AT2G40940 | 32.110 | 327 | 173 | 9 | 330 | 648 | 298 | 583 | 9.85e-30 | 126 |
| MS.gene014939.t1 | AT2G17820 | 31.655 | 278 | 169 | 4 | 373 | 648 | 501 | 759 | 1.82e-27 | 120 |
| MS.gene014939.t1 | AT1G66340 | 27.628 | 333 | 186 | 7 | 331 | 655 | 299 | 584 | 1.95e-27 | 119 |
| MS.gene014939.t1 | AT2G47430 | 29.022 | 317 | 197 | 10 | 341 | 646 | 366 | 665 | 7.15e-23 | 105 |
Find 159 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATGCTCCTGTTGTTAT+TGG | 0.154518 | 3.2:-86819837 | MS.gene014939:CDS |
| CTCACAAATTTCACAGAAAA+AGG | 0.181280 | 3.2:-86820335 | MS.gene014939:CDS |
| ATATAGAAACCGGTCGTTTA+TGG | 0.218811 | 3.2:+86820144 | None:intergenic |
| CAATTCCAACCTCCCAATTT+AGG | 0.220850 | 3.2:-86817134 | MS.gene014939:CDS |
| CAATACATAGTTTATTTAAA+AGG | 0.226595 | 3.2:-86817585 | MS.gene014939:CDS |
| TAAACGACCGGTTTCTATAT+TGG | 0.230609 | 3.2:-86820141 | MS.gene014939:CDS |
| GCTAAGGAAGTTGGAGATAT+TGG | 0.232044 | 3.2:-86820201 | MS.gene014939:CDS |
| TGGATGATATTTATGATATA+TGG | 0.239075 | 3.2:-86820121 | MS.gene014939:CDS |
| AGAGACTAGATGGCCTAAAT+TGG | 0.246731 | 3.2:+86817121 | None:intergenic |
| GAGATAAGATCTCCACTTTC+TGG | 0.266189 | 3.2:-86819046 | MS.gene014939:CDS |
| CAATAACAACAGGAGCATTT+TGG | 0.278884 | 3.2:+86819838 | None:intergenic |
| CATCCTGTCTTTGTTTGTTT+AGG | 0.281414 | 3.2:+86820228 | None:intergenic |
| GCCTTCATTTGTAAATTTGA+TGG | 0.281976 | 3.2:+86818039 | None:intergenic |
| AAACTTCCCTCTTAAAATCT+TGG | 0.284644 | 3.2:+86819608 | None:intergenic |
| AACATAGATGTTGTCAATAA+TGG | 0.290513 | 3.2:-86816702 | MS.gene014939:CDS |
| TACCTCTCTAGGTCGAAATT+TGG | 0.290931 | 3.2:+86818510 | None:intergenic |
| TTTAGGCTTTGATATGGATT+TGG | 0.311499 | 3.2:+86816794 | None:intergenic |
| AACATATCTTGATCATTTCC+TGG | 0.315890 | 3.2:+86820419 | None:intergenic |
| GGGTAGACTTTGCTCGATTC+CGG | 0.321938 | 3.2:+86816375 | None:intergenic |
| CATGTTGTCATCTGGAGATT+TGG | 0.337835 | 3.2:-86818954 | MS.gene014939:CDS |
| ATCTGCTACATGTCCTTCTA+TGG | 0.343030 | 3.2:+86818438 | None:intergenic |
| GATCTTTCCAAGGTTGAATC+AGG | 0.345581 | 3.2:-86818905 | MS.gene014939:intron |
| AAGAATCTGCAATACCATTC+TGG | 0.355194 | 3.2:+86816880 | None:intergenic |
| TTGGCTCTTGCACAACATAA+AGG | 0.355853 | 3.2:+86818002 | None:intergenic |
| AGTTGATGATTCAAATTCAT+TGG | 0.362860 | 3.2:-86816979 | MS.gene014939:CDS |
| GTGAGTTCTGTTTGCTCCGC+TGG | 0.364472 | 3.2:+86817097 | None:intergenic |
| ATGGGAATTCGCTTTGTAGA+TGG | 0.376345 | 3.2:+86816328 | None:intergenic |
| AGAGTGTGTTGAGGATATTA+TGG | 0.378342 | 3.2:-86820516 | MS.gene014939:CDS |
| TTTCACTACATTCACAGAAA+TGG | 0.384669 | 3.2:+86817931 | None:intergenic |
| GTAGATCACGCTCGAAAGTA+TGG | 0.384965 | 3.2:-86817547 | MS.gene014939:CDS |
| CTTTCGAGGAAACAGGCAAT+TGG | 0.386287 | 3.2:-86816414 | MS.gene014939:intron |
| CATTCGTAATTGCAGGTCAT+TGG | 0.389666 | 3.2:-86818276 | MS.gene014939:intron |
| CAGAAAATATTAACCATAGA+AGG | 0.390045 | 3.2:-86818451 | MS.gene014939:CDS |
| AATAAAACCATTCACATAAC+AGG | 0.395118 | 3.2:-86819214 | MS.gene014939:intron |
| TGCAGATTCTTCTCAGCATA+TGG | 0.396404 | 3.2:-86816868 | MS.gene014939:CDS |
| AAATGTGTCATCACCTCTAT+AGG | 0.404208 | 3.2:+86818409 | None:intergenic |
| CTAAATTGGGAGGTTGGAAT+TGG | 0.404734 | 3.2:+86817135 | None:intergenic |
| CAATCAACCTGTTATGTGAA+TGG | 0.404844 | 3.2:+86819207 | None:intergenic |
| ATTCGGTCTTTCGAGGAAAC+AGG | 0.407480 | 3.2:-86816421 | MS.gene014939:intron |
| TCCTGTTGTTATTGGCCATC+AGG | 0.408491 | 3.2:-86819829 | MS.gene014939:CDS |
| GCCATCAAATTTACAAATGA+AGG | 0.414139 | 3.2:-86818040 | MS.gene014939:CDS |
| ACGTCAGCTCCAATATCTTC+TGG | 0.420722 | 3.2:+86820467 | None:intergenic |
| TTTACAAATGAAGGCAAAGT+AGG | 0.421277 | 3.2:-86818031 | MS.gene014939:CDS |
| GTGTCTAGCAAAGAACAAAA+TGG | 0.421334 | 3.2:-86817287 | MS.gene014939:CDS |
| TATACTCCCAATGTTTCATA+AGG | 0.422050 | 3.2:+86820294 | None:intergenic |
| TTCTGCATAGGTTGAGTTGA+TGG | 0.425115 | 3.2:-86817324 | MS.gene014939:intron |
| TTGGATGTCATGTTGTCATC+TGG | 0.426050 | 3.2:-86818962 | MS.gene014939:CDS |
| AGCAAGGCAGGTGAAACAAT+TGG | 0.429476 | 3.2:-86819493 | MS.gene014939:CDS |
| ATCGAGCATTCACTCTTAAC+CGG | 0.430609 | 3.2:+86817872 | None:intergenic |
| CAAGCGATCGAGACCTTGTA+TGG | 0.430770 | 3.2:+86817242 | None:intergenic |
| TCACCTGCCTTGCTGAAGAC+AGG | 0.433507 | 3.2:+86819502 | None:intergenic |
| GCTCGAAAGTATGGTGGGAC+AGG | 0.435553 | 3.2:-86817538 | MS.gene014939:CDS |
| ATATCTTCTGGCCACATTGA+AGG | 0.436714 | 3.2:+86820479 | None:intergenic |
| AGCGTACAAAAGATTAGTTC+AGG | 0.440570 | 3.2:-86817962 | MS.gene014939:CDS |
| TCAATGTGGCCAGAAGATAT+TGG | 0.443354 | 3.2:-86820476 | MS.gene014939:CDS |
| AAGTATGGTGGGACAGGGCT+AGG | 0.445638 | 3.2:-86817532 | MS.gene014939:CDS |
| GGATGTTGAGCTAAGGAAGT+TGG | 0.448739 | 3.2:-86820210 | MS.gene014939:CDS |
| ACTTTCTGGTGTTGTTAGCA+TGG | 0.454583 | 3.2:-86819032 | MS.gene014939:CDS |
| ATTCACTGGATCTGGTGTTA+AGG | 0.458619 | 3.2:-86819635 | MS.gene014939:CDS |
| CTCCGCTGGAAGAGACTAGA+TGG | 0.459344 | 3.2:+86817111 | None:intergenic |
| TCCAATGACAACATATCAAA+AGG | 0.462175 | 3.2:-86817011 | MS.gene014939:CDS |
| ATATCATCCAATATAGAAAC+CGG | 0.463376 | 3.2:+86820134 | None:intergenic |
| ATTACCTCCTCATGTAAACT+TGG | 0.464486 | 3.2:+86819768 | None:intergenic |
| TCCTGATGGCCAATAACAAC+AGG | 0.466242 | 3.2:+86819828 | None:intergenic |
| GGTTGTGATGTATATGATAC+AGG | 0.469429 | 3.2:-86817797 | MS.gene014939:CDS |
| ACTAGCAATATGCAAACAAC+TGG | 0.471382 | 3.2:-86817509 | MS.gene014939:intron |
| TTTCGAGGAAACAGGCAATT+GGG | 0.473287 | 3.2:-86816413 | MS.gene014939:intron |
| AGCCTACCTTATGAAACATT+GGG | 0.475348 | 3.2:-86820300 | MS.gene014939:CDS |
| ATTTGAGAGAGTTCTTCAAC+AGG | 0.477140 | 3.2:+86819897 | None:intergenic |
| GATGCACTTGGAAAAGTTGT+TGG | 0.486450 | 3.2:-86819997 | MS.gene014939:CDS |
| GAGACTAGATGGCCTAAATT+GGG | 0.487886 | 3.2:+86817122 | None:intergenic |
| TCTTGTTATCTTCAACAAGA+AGG | 0.489724 | 3.2:+86816769 | None:intergenic |
| ACCTCAACTCTTTGTCCTGA+TGG | 0.491700 | 3.2:+86819814 | None:intergenic |
| AAGAATGTTTGCTAATGGTA+TGG | 0.493740 | 3.2:-86816088 | MS.gene014939:CDS |
| GAACCTGTCTTCAGCAAGGC+AGG | 0.495617 | 3.2:-86819505 | MS.gene014939:CDS |
| ATGACCCAACTGTTTCATCA+TGG | 0.497053 | 3.2:+86816725 | None:intergenic |
| CACATTCATACTTCCATACA+AGG | 0.497367 | 3.2:-86817255 | MS.gene014939:CDS |
| TAGCCTACCTTATGAAACAT+TGG | 0.501009 | 3.2:-86820301 | MS.gene014939:CDS |
| TTTCCAACCTGATTCAACCT+TGG | 0.502835 | 3.2:+86818898 | None:intergenic |
| GGGAATGGATGTAACAGATC+AGG | 0.507588 | 3.2:-86819458 | MS.gene014939:intron |
| ATAATATTCATAATCTCGAT+TGG | 0.508357 | 3.2:+86816354 | None:intergenic |
| CAAGGAGCAAAGACAGCTGT+TGG | 0.510482 | 3.2:-86818981 | MS.gene014939:CDS |
| TGGAATCAATTACATGGGAA+TGG | 0.513449 | 3.2:-86819473 | MS.gene014939:CDS |
| GTCGAAATATTCACTGGATC+TGG | 0.516463 | 3.2:-86819643 | MS.gene014939:CDS |
| AGTATGATACTGTTGTGTAC+TGG | 0.516963 | 3.2:-86820031 | MS.gene014939:CDS |
| GATGGCCTAAATTGGGAGGT+TGG | 0.523038 | 3.2:+86817129 | None:intergenic |
| AACAATTGGAATCAATTACA+TGG | 0.523571 | 3.2:-86819479 | MS.gene014939:CDS |
| AGCAGATGATGTACCTATAG+AGG | 0.523933 | 3.2:-86818422 | MS.gene014939:intron |
| CAACCTAAACAAACAAAGAC+AGG | 0.527200 | 3.2:-86820231 | MS.gene014939:CDS |
| ATTGGAAGAACATAGATTTG+AGG | 0.528522 | 3.2:-86820183 | MS.gene014939:CDS |
| CTGTGTAGGAGTTATGAAGT+TGG | 0.528994 | 3.2:-86818539 | MS.gene014939:intron |
| ATGCTAACAACACCAGAAAG+TGG | 0.529641 | 3.2:+86819034 | None:intergenic |
| TCTGCATAGGTTGAGTTGAT+GGG | 0.531045 | 3.2:-86817323 | MS.gene014939:intron |
| CTTTCCAAGTTTACATGAGG+AGG | 0.532167 | 3.2:-86819772 | MS.gene014939:intron |
| ACTGATGTCGAAATATTCAC+TGG | 0.534032 | 3.2:-86819649 | MS.gene014939:CDS |
| ACATGCTTTACTACCTCTCT+AGG | 0.534889 | 3.2:+86818499 | None:intergenic |
| GATGTATATGATACAGGCAT+TGG | 0.535140 | 3.2:-86817791 | MS.gene014939:CDS |
| CTCAGATGAATTCTCAGACA+TGG | 0.538037 | 3.2:-86817204 | MS.gene014939:CDS |
| CTAGTGCTTACCGCAACAAT+GGG | 0.538212 | 3.2:+86816310 | None:intergenic |
| TAATATTCATAATCTCGATT+GGG | 0.540994 | 3.2:+86816355 | None:intergenic |
| ACAATCCATGATGAAACAGT+TGG | 0.545179 | 3.2:-86816730 | MS.gene014939:CDS |
| TCTAGTGCTTACCGCAACAA+TGG | 0.547183 | 3.2:+86816309 | None:intergenic |
| TAATGATGAGTGTAGATCTC+CGG | 0.548746 | 3.2:-86817891 | MS.gene014939:CDS |
| GAAACATTGGGAGTATAAGC+AGG | 0.551772 | 3.2:-86820288 | MS.gene014939:CDS |
| TGCTGAAGAATGTTTGCTAA+TGG | 0.551888 | 3.2:-86816093 | MS.gene014939:CDS |
| TGGAGCAGAGGCGGTGCGTG+CGG | 0.557895 | 3.2:-86816682 | MS.gene014939:CDS |
| TTACAAATGAAGGCAAAGTA+GGG | 0.560913 | 3.2:-86818030 | MS.gene014939:CDS |
| TATGTTGTCATTGGAAGTAG+AGG | 0.564452 | 3.2:+86817019 | None:intergenic |
| TGACATACTTGATCTTTCCA+AGG | 0.565536 | 3.2:-86818915 | MS.gene014939:CDS |
| TACATATGACCTGGTTCTGA+TGG | 0.568683 | 3.2:-86816649 | MS.gene014939:intron |
| GCACTTGGAAAAGTTGTTGG+AGG | 0.568733 | 3.2:-86819994 | MS.gene014939:CDS |
| GAAACAGCGAGCGATGCACT+TGG | 0.570341 | 3.2:-86820009 | MS.gene014939:CDS |
| CAATCCATGATGAAACAGTT+GGG | 0.571813 | 3.2:-86816729 | MS.gene014939:CDS |
| AGATAACAAGATTAACATCA+TGG | 0.572107 | 3.2:-86816757 | MS.gene014939:CDS |
| CATTATATAGATGATGTTTG+TGG | 0.574874 | 3.2:+86816916 | None:intergenic |
| TTCCACCACAAAACTTGACA+AGG | 0.576173 | 3.2:-86818999 | MS.gene014939:CDS |
| TATGAGAGCAAAGAAAGTGC+TGG | 0.576593 | 3.2:-86819083 | MS.gene014939:CDS |
| GGAGTATAAGCAGGCGAGCG+TGG | 0.578452 | 3.2:-86820279 | MS.gene014939:CDS |
| ATGATGCTGCGGCTGTCTGA+AGG | 0.579152 | 3.2:+86818476 | None:intergenic |
| CCTCATGTAAACTTGGAAAG+TGG | 0.579172 | 3.2:+86819775 | None:intergenic |
| AGATTTGAGGACGAAAGATA+CGG | 0.579302 | 3.2:-86820170 | MS.gene014939:CDS |
| ATCTATATAATGCTCATGCA+TGG | 0.579361 | 3.2:-86816905 | MS.gene014939:CDS |
| TCTGATGATACAACAACAGA+AGG | 0.580893 | 3.2:-86817164 | MS.gene014939:CDS |
| CCACTTTCCAAGTTTACATG+AGG | 0.590769 | 3.2:-86819775 | MS.gene014939:CDS |
| AAAGACAGGATGTTGAGCTA+AGG | 0.596277 | 3.2:-86820217 | MS.gene014939:CDS |
| CTCGAAAGTATGGTGGGACA+GGG | 0.596487 | 3.2:-86817537 | MS.gene014939:CDS |
| TACCAAATTTCGACCTAGAG+AGG | 0.598602 | 3.2:-86818512 | MS.gene014939:CDS |
| GCTCATGCATGGTTCCAGAA+TGG | 0.599781 | 3.2:-86816894 | MS.gene014939:CDS |
| AAGAGTGAATGCTCGATGAA+CGG | 0.601254 | 3.2:-86817866 | MS.gene014939:CDS |
| CAGTTCAATATAGAAAAGCC+AGG | 0.602854 | 3.2:-86820437 | MS.gene014939:CDS |
| GGCCATCTAGTCTCTTCCAG+CGG | 0.607869 | 3.2:-86817113 | MS.gene014939:CDS |
| GAAGATATTGGAGCTGACGT+TGG | 0.611663 | 3.2:-86820464 | MS.gene014939:CDS |
| GATACAGGCATTGGAATACC+AGG | 0.612622 | 3.2:-86817782 | MS.gene014939:intron |
| AAAGCGAATTCCCATTGTTG+CGG | 0.612866 | 3.2:-86816320 | MS.gene014939:intron |
| CTTCTGGCCACATTGAAGGA+AGG | 0.613983 | 3.2:+86820483 | None:intergenic |
| AATGCAACAACAGTGTGGAT+AGG | 0.617754 | 3.2:-86817818 | MS.gene014939:CDS |
| ACAATTGGAATCAATTACAT+GGG | 0.619533 | 3.2:-86819478 | MS.gene014939:CDS |
| ATCACGCTCGAAAGTATGGT+GGG | 0.619892 | 3.2:-86817543 | MS.gene014939:CDS |
| CATAAATTACCATCAGAACC+AGG | 0.627013 | 3.2:+86816640 | None:intergenic |
| TGTAGAACCTGTCTTCAGCA+AGG | 0.629088 | 3.2:-86819509 | MS.gene014939:CDS |
| AAATTCTCACAAATTTAACC+AGG | 0.643959 | 3.2:-86818233 | MS.gene014939:intron |
| CTCCCAATGTTTCATAAGGT+AGG | 0.643980 | 3.2:+86820298 | None:intergenic |
| GCATAGGTTGAGTTGATGGG+AGG | 0.644228 | 3.2:-86817320 | MS.gene014939:intron |
| TCAGCGCTGTACATATGACC+TGG | 0.644473 | 3.2:-86816658 | MS.gene014939:CDS |
| ATACGGAGGCCATAAACGAC+CGG | 0.646119 | 3.2:-86820153 | MS.gene014939:CDS |
| AGATTCTTCTCAGCATATGG+TGG | 0.646433 | 3.2:-86816865 | MS.gene014939:CDS |
| GATTGCTGTTCAGAAAGCAA+AGG | 0.648370 | 3.2:-86819248 | MS.gene014939:CDS |
| TGTCAATAATGGAGCAGAGG+CGG | 0.649552 | 3.2:-86816691 | MS.gene014939:CDS |
| GAAAATCCACAAAATTTGTG+CGG | 0.650564 | 3.2:+86817062 | None:intergenic |
| ATGTTGTCATTGGAAGTAGA+GGG | 0.650718 | 3.2:+86817020 | None:intergenic |
| GATCACGCTCGAAAGTATGG+TGG | 0.655464 | 3.2:-86817544 | MS.gene014939:CDS |
| GCCATCAGGACAAAGAGTTG+AGG | 0.656169 | 3.2:-86819815 | MS.gene014939:CDS |
| TGTTGTCAATAATGGAGCAG+AGG | 0.659976 | 3.2:-86816694 | MS.gene014939:CDS |
| TTGAAGTCCTTCCTTCAATG+TGG | 0.668513 | 3.2:-86820490 | MS.gene014939:CDS |
| ACTAGATGGCCTAAATTGGG+AGG | 0.678417 | 3.2:+86817125 | None:intergenic |
| ACTCAAATGCAACAACAGTG+TGG | 0.687455 | 3.2:-86817823 | MS.gene014939:CDS |
| CTCGATGAACGGAGACACAG+AGG | 0.693267 | 3.2:-86817855 | MS.gene014939:CDS |
| GTATGGAAGTATGAATGTGA+AGG | 0.713387 | 3.2:+86817259 | None:intergenic |
| TTTGAGGACGAAAGATACGG+AGG | 0.715280 | 3.2:-86820167 | MS.gene014939:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTAAACTTATCTAT+TGG | - | chr3.2:86817739-86817758 | MS.gene014939:intron | 10.0% |
| !!! | CTTCTTATTTTTTAAATTTT+TGG | - | chr3.2:86817225-86817244 | MS.gene014939:CDS | 10.0% |
| !!! | TTCTATTATATTTTGTTATA+GGG | - | chr3.2:86817875-86817894 | MS.gene014939:CDS | 10.0% |
| !!! | TTTCTATTATATTTTGTTAT+AGG | - | chr3.2:86817874-86817893 | MS.gene014939:CDS | 10.0% |
| !!! | TTTTCTAATTAATATGTTAA+TGG | + | chr3.2:86820299-86820318 | None:intergenic | 10.0% |
| !! | CAATACATAGTTTATTTAAA+AGG | - | chr3.2:86818988-86819007 | MS.gene014939:CDS | 15.0% |
| !! | TTAAATAATTCAATCTAAAC+AGG | + | chr3.2:86817729-86817748 | None:intergenic | 15.0% |
| !!! | AAAACTAATTAATTTGATAG+AGG | + | chr3.2:86817423-86817442 | None:intergenic | 15.0% |
| !! | ATAATATTCATAATCTCGAT+TGG | + | chr3.2:86820222-86820241 | None:intergenic | 20.0% |
| !! | TAATATTCATAATCTCGATT+GGG | + | chr3.2:86820221-86820240 | None:intergenic | 20.0% |
| !! | TGGATGATATTTATGATATA+TGG | - | chr3.2:86816452-86816471 | MS.gene014939:intron | 20.0% |
| ! | AAACAGAAGAATAGAGATTA+AGG | + | chr3.2:86818864-86818883 | None:intergenic | 25.0% |
| ! | AAATTCTCACAAATTTAACC+AGG | - | chr3.2:86818340-86818359 | MS.gene014939:intron | 25.0% |
| ! | AACAATTGGAATCAATTACA+TGG | - | chr3.2:86817094-86817113 | MS.gene014939:CDS | 25.0% |
| ! | AACATAGATGTTGTCAATAA+TGG | - | chr3.2:86819871-86819890 | MS.gene014939:CDS | 25.0% |
| ! | AATAAAACCATTCACATAAC+AGG | - | chr3.2:86817359-86817378 | MS.gene014939:intron | 25.0% |
| ! | ACAATTGGAATCAATTACAT+GGG | - | chr3.2:86817095-86817114 | MS.gene014939:CDS | 25.0% |
| ! | AGATAACAAGATTAACATCA+TGG | - | chr3.2:86819816-86819835 | MS.gene014939:CDS | 25.0% |
| ! | ATAAAATGTAACTTCTGCAT+AGG | - | chr3.2:86819237-86819256 | MS.gene014939:CDS | 25.0% |
| ! | ATATCATCCAATATAGAAAC+CGG | + | chr3.2:86816442-86816461 | None:intergenic | 25.0% |
| ! | ATGAATCTCTTGAAAAATGT+AGG | - | chr3.2:86817265-86817284 | MS.gene014939:CDS | 25.0% |
| ! | CAGAAAATATTAACCATAGA+AGG | - | chr3.2:86818122-86818141 | MS.gene014939:intron | 25.0% |
| ! | CATTATATAGATGATGTTTG+TGG | + | chr3.2:86819660-86819679 | None:intergenic | 25.0% |
| ! | GTAGTGAAAGAAGAAAAATA+TGG | - | chr3.2:86818656-86818675 | MS.gene014939:intron | 25.0% |
| ! | TAGTTATAGTAGATAATACC+TGG | + | chr3.2:86818812-86818831 | None:intergenic | 25.0% |
| ! | TCACATAAAAATTTAGTACC+TGG | + | chr3.2:86818361-86818380 | None:intergenic | 25.0% |
| ! | TTTCCTCTATTAAAAAGATG+AGG | + | chr3.2:86817469-86817488 | None:intergenic | 25.0% |
| !! | AATTTCTTGTGTAGAGTATT+TGG | - | chr3.2:86819089-86819108 | MS.gene014939:CDS | 25.0% |
| !! | ATTTTCTGTCATCTTTTTTC+AGG | - | chr3.2:86816887-86816906 | MS.gene014939:CDS | 25.0% |
| !! | TTTCCTCATCTTTTTAATAG+AGG | - | chr3.2:86817463-86817482 | MS.gene014939:intron | 25.0% |
| !!! | AGTTGATGATTCAAATTCAT+TGG | - | chr3.2:86819594-86819613 | MS.gene014939:CDS | 25.0% |
| !!! | ATCTTTTTTCAGGACATAAT+AGG | - | chr3.2:86816897-86816916 | MS.gene014939:CDS | 25.0% |
| AAACTTCCCTCTTAAAATCT+TGG | + | chr3.2:86816968-86816987 | None:intergenic | 30.0% | |
| AACATATCTTGATCATTTCC+TGG | + | chr3.2:86816157-86816176 | None:intergenic | 30.0% | |
| AATTATTCGTAGAGAGAAAG+TGG | + | chr3.2:86819979-86819998 | None:intergenic | 30.0% | |
| AGCTATCTTAAAGACTTTAC+AGG | + | chr3.2:86817816-86817835 | None:intergenic | 30.0% | |
| ATCTATATAATGCTCATGCA+TGG | - | chr3.2:86819668-86819687 | MS.gene014939:intron | 30.0% | |
| ATTGGAAGAACATAGATTTG+AGG | - | chr3.2:86816390-86816409 | MS.gene014939:CDS | 30.0% | |
| CAATCTAAACAGGTCTAATA+TGG | + | chr3.2:86817719-86817738 | None:intergenic | 30.0% | |
| CTCACAAATTTCACAGAAAA+AGG | - | chr3.2:86816238-86816257 | MS.gene014939:intron | 30.0% | |
| CTTCAAGCACAAAACTAATT+CGG | - | chr3.2:86820135-86820154 | MS.gene014939:CDS | 30.0% | |
| GAAAATCCACAAAATTTGTG+CGG | + | chr3.2:86819514-86819533 | None:intergenic | 30.0% | |
| GCCATCAAATTTACAAATGA+AGG | - | chr3.2:86818533-86818552 | MS.gene014939:CDS | 30.0% | |
| GCCTTCATTTGTAAATTTGA+TGG | + | chr3.2:86818537-86818556 | None:intergenic | 30.0% | |
| TAAACAGGTCTAATATGGAT+TGG | + | chr3.2:86817714-86817733 | None:intergenic | 30.0% | |
| TATACTCCCAATGTTTCATA+AGG | + | chr3.2:86816282-86816301 | None:intergenic | 30.0% | |
| TCCAATGACAACATATCAAA+AGG | - | chr3.2:86819562-86819581 | MS.gene014939:CDS | 30.0% | |
| TGTAGGTTAGAAAAAGAGAA+AGG | - | chr3.2:86817282-86817301 | MS.gene014939:CDS | 30.0% | |
| TTACAAATGAAGGCAAAGTA+GGG | - | chr3.2:86818543-86818562 | MS.gene014939:intron | 30.0% | |
| TTTACAAATGAAGGCAAAGT+AGG | - | chr3.2:86818542-86818561 | MS.gene014939:intron | 30.0% | |
| TTTCACTACATTCACAGAAA+TGG | + | chr3.2:86818645-86818664 | None:intergenic | 30.0% | |
| TTTCATAGTTGCACTTTACT+AGG | - | chr3.2:86820086-86820105 | MS.gene014939:CDS | 30.0% | |
| ! | AAGAATGTTTGCTAATGGTA+TGG | - | chr3.2:86820485-86820504 | MS.gene014939:CDS | 30.0% |
| ! | ACTAATCTTTTGTACGCTTT+CGG | + | chr3.2:86818609-86818628 | None:intergenic | 30.0% |
| ! | ATCTAGTTTATGTATCACTG+AGG | + | chr3.2:86817975-86817994 | None:intergenic | 30.0% |
| ! | CCTTACTATGAATGTCTTTT+GGG | - | chr3.2:86820395-86820414 | MS.gene014939:CDS | 30.0% |
| ! | GCAAAAAAGTATATGTATCC+TGG | + | chr3.2:86817177-86817196 | None:intergenic | 30.0% |
| ! | TCCTTACTATGAATGTCTTT+TGG | - | chr3.2:86820394-86820413 | MS.gene014939:CDS | 30.0% |
| ! | TCCTTTTGATATGTTGTCAT+TGG | + | chr3.2:86819566-86819585 | None:intergenic | 30.0% |
| ! | TCTTCAACAAGAAGGATTTT+AGG | + | chr3.2:86819799-86819818 | None:intergenic | 30.0% |
| ! | TCTTGTTATCTTCAACAAGA+AGG | + | chr3.2:86819807-86819826 | None:intergenic | 30.0% |
| ! | TTTAGGCTTTGATATGGATT+TGG | + | chr3.2:86819782-86819801 | None:intergenic | 30.0% |
| !! | AAGGATTTTAGGCTTTGATA+TGG | + | chr3.2:86819788-86819807 | None:intergenic | 30.0% |
| !! | AGATTTTAAGAGGGAAGTTT+TGG | - | chr3.2:86816968-86816987 | MS.gene014939:CDS | 30.0% |
| !! | ATAAGTTGTTTTCAGCGTAT+CGG | - | chr3.2:86817763-86817782 | MS.gene014939:intron | 30.0% |
| !! | TCTAATATGGATTGGAAACA+AGG | + | chr3.2:86817706-86817725 | None:intergenic | 30.0% |
| !!! | ACAACATTACTTTTTCTGCA+AGG | + | chr3.2:86816490-86816509 | None:intergenic | 30.0% |
| !!! | ACTTTTGAGACAGAACTATT+TGG | - | chr3.2:86817020-86817039 | MS.gene014939:CDS | 30.0% |
| !!! | TTGGTGATGTTTTAAGGATT+CGG | - | chr3.2:86818316-86818335 | MS.gene014939:intron | 30.0% |
| AAAAAGGATTGCCTGCAAAA+AGG | - | chr3.2:86816991-86817010 | MS.gene014939:CDS | 35.0% | |
| AAAACTAATTCGGTCTTTCG+AGG | - | chr3.2:86820145-86820164 | MS.gene014939:CDS | 35.0% | |
| AAAAGGATTGCCTGCAAAAA+GGG | - | chr3.2:86816992-86817011 | MS.gene014939:CDS | 35.0% | |
| AAATGTGTCATCACCTCTAT+AGG | + | chr3.2:86818167-86818186 | None:intergenic | 35.0% | |
| AAGAATCTGCAATACCATTC+TGG | + | chr3.2:86819696-86819715 | None:intergenic | 35.0% | |
| ACAATCCATGATGAAACAGT+TGG | - | chr3.2:86819843-86819862 | MS.gene014939:CDS | 35.0% | |
| ACTAGCAATATGCAAACAAC+TGG | - | chr3.2:86819064-86819083 | MS.gene014939:CDS | 35.0% | |
| ACTGATGTCGAAATATTCAC+TGG | - | chr3.2:86816924-86816943 | MS.gene014939:CDS | 35.0% | |
| AGAGTGTGTTGAGGATATTA+TGG | - | chr3.2:86816057-86816076 | MS.gene014939:CDS | 35.0% | |
| AGATTTGAGGACGAAAGATA+CGG | - | chr3.2:86816403-86816422 | MS.gene014939:CDS | 35.0% | |
| AGCCTACCTTATGAAACATT+GGG | - | chr3.2:86816273-86816292 | MS.gene014939:intron | 35.0% | |
| AGTATGATACTGTTGTGTAC+TGG | - | chr3.2:86816542-86816561 | MS.gene014939:intron | 35.0% | |
| ATATAGAAACCGGTCGTTTA+TGG | + | chr3.2:86816432-86816451 | None:intergenic | 35.0% | |
| ATGTTGTCATTGGAAGTAGA+GGG | + | chr3.2:86819556-86819575 | None:intergenic | 35.0% | |
| ATTACCTCCTCATGTAAACT+TGG | + | chr3.2:86816808-86816827 | None:intergenic | 35.0% | |
| ATTTGAGAGAGTTCTTCAAC+AGG | + | chr3.2:86816679-86816698 | None:intergenic | 35.0% | |
| CAAAATGCTCCTGTTGTTAT+TGG | - | chr3.2:86816736-86816755 | MS.gene014939:CDS | 35.0% | |
| CAACCTAAACAAACAAAGAC+AGG | - | chr3.2:86816342-86816361 | MS.gene014939:CDS | 35.0% | |
| CAATCAACCTGTTATGTGAA+TGG | + | chr3.2:86817369-86817388 | None:intergenic | 35.0% | |
| CAATCCATGATGAAACAGTT+GGG | - | chr3.2:86819844-86819863 | MS.gene014939:CDS | 35.0% | |
| CACATTCATACTTCCATACA+AGG | - | chr3.2:86819318-86819337 | MS.gene014939:intron | 35.0% | |
| CAGTTCAATATAGAAAAGCC+AGG | - | chr3.2:86816136-86816155 | MS.gene014939:intron | 35.0% | |
| CATAAATTACCATCAGAACC+AGG | + | chr3.2:86819936-86819955 | None:intergenic | 35.0% | |
| CCCAAAAGACATTCATAGTA+AGG | + | chr3.2:86820398-86820417 | None:intergenic | 35.0% | |
| GATGTATATGATACAGGCAT+TGG | - | chr3.2:86818782-86818801 | MS.gene014939:intron | 35.0% | |
| GGTTAGAAAAAGAGAAAGGA+TGG | - | chr3.2:86817286-86817305 | MS.gene014939:CDS | 35.0% | |
| GGTTGTGATGTATATGATAC+AGG | - | chr3.2:86818776-86818795 | MS.gene014939:intron | 35.0% | |
| GTGTCTAGCAAAGAACAAAA+TGG | - | chr3.2:86819286-86819305 | MS.gene014939:CDS | 35.0% | |
| TAATGATGAGTGTAGATCTC+CGG | - | chr3.2:86818682-86818701 | MS.gene014939:intron | 35.0% | |
| TAGCCTACCTTATGAAACAT+TGG | - | chr3.2:86816272-86816291 | MS.gene014939:intron | 35.0% | |
| TATGTTGTCATTGGAAGTAG+AGG | + | chr3.2:86819557-86819576 | None:intergenic | 35.0% | |
| TCTGATGATACAACAACAGA+AGG | - | chr3.2:86819409-86819428 | MS.gene014939:intron | 35.0% | |
| TGACATACTTGATCTTTCCA+AGG | - | chr3.2:86817658-86817677 | MS.gene014939:intron | 35.0% | |
| TGCTTATATATCGTTCCAGA+GGG | - | chr3.2:86817194-86817213 | MS.gene014939:CDS | 35.0% | |
| TGGAATCAATTACATGGGAA+TGG | - | chr3.2:86817100-86817119 | MS.gene014939:CDS | 35.0% | |
| TGTTGAAGCTCTTCTTGAAA+AGG | - | chr3.2:86816837-86816856 | MS.gene014939:CDS | 35.0% | |
| TTGCTTATATATCGTTCCAG+AGG | - | chr3.2:86817193-86817212 | MS.gene014939:CDS | 35.0% | |
| TTTACACCTTCAGTGTGTAT+CGG | - | chr3.2:86818443-86818462 | MS.gene014939:CDS | 35.0% | |
| ! | AAAGTGATTTCCCTTTTTGC+AGG | + | chr3.2:86817005-86817024 | None:intergenic | 35.0% |
| ! | AGCGTACAAAAGATTAGTTC+AGG | - | chr3.2:86818611-86818630 | MS.gene014939:intron | 35.0% |
| ! | AGGAGAACCAAGATTTTAAG+AGG | - | chr3.2:86816958-86816977 | MS.gene014939:CDS | 35.0% |
| ! | CATCCTGTCTTTGTTTGTTT+AGG | + | chr3.2:86816348-86816367 | None:intergenic | 35.0% |
| ! | CTAATCTTTTGTACGCTTTC+GGG | + | chr3.2:86818608-86818627 | None:intergenic | 35.0% |
| ! | CTACACAGAATGCAGATTTT+GGG | + | chr3.2:86818022-86818041 | None:intergenic | 35.0% |
| ! | GTATGGAAGTATGAATGTGA+AGG | + | chr3.2:86819317-86819336 | None:intergenic | 35.0% |
| ! | GTGTAGAGTATTTGGTTACA+TGG | - | chr3.2:86819097-86819116 | MS.gene014939:intron | 35.0% |
| ! | GTTACTCCCTACGAAATTTT+TGG | - | chr3.2:86817150-86817169 | MS.gene014939:CDS | 35.0% |
| ! | TAAACGACCGGTTTCTATAT+TGG | - | chr3.2:86816432-86816451 | MS.gene014939:intron | 35.0% |
| ! | TATTTTCTGCAATGATGCTG+CGG | + | chr3.2:86818111-86818130 | None:intergenic | 35.0% |
| ! | TGCTGAAGAATGTTTGCTAA+TGG | - | chr3.2:86820480-86820499 | MS.gene014939:CDS | 35.0% |
| ! | TTATTGCCGCACAAATTTTG+TGG | - | chr3.2:86819505-86819524 | MS.gene014939:CDS | 35.0% |
| !! | CTGGTTCTGATGGTAATTTA+TGG | - | chr3.2:86819934-86819953 | MS.gene014939:CDS | 35.0% |
| !! | GGAGAACCAAGATTTTAAGA+GGG | - | chr3.2:86816959-86816978 | MS.gene014939:CDS | 35.0% |
| !!! | AAGAGGGAAGTTTTGGAAAA+AGG | - | chr3.2:86816975-86816994 | MS.gene014939:CDS | 35.0% |
| !!! | AGGTCATTGGTGATGTTTTA+AGG | - | chr3.2:86818310-86818329 | MS.gene014939:intron | 35.0% |
| !!! | CAATAACAACAGGAGCATTT+TGG | + | chr3.2:86816738-86816757 | None:intergenic | 35.0% |
| !!! | CTTTCGGGTTTTGTAAAACT+TGG | + | chr3.2:86818593-86818612 | None:intergenic | 35.0% |
| AAAGACAGGATGTTGAGCTA+AGG | - | chr3.2:86816356-86816375 | MS.gene014939:CDS | 40.0% | |
| AAAGCGAATTCCCATTGTTG+CGG | - | chr3.2:86820253-86820272 | MS.gene014939:CDS | 40.0% | |
| AAGAGTGAATGCTCGATGAA+CGG | - | chr3.2:86818707-86818726 | MS.gene014939:intron | 40.0% | |
| AATGCAACAACAGTGTGGAT+AGG | - | chr3.2:86818755-86818774 | MS.gene014939:intron | 40.0% | |
| ACATGCTTTACTACCTCTCT+AGG | + | chr3.2:86818077-86818096 | None:intergenic | 40.0% | |
| ACTCAAATGCAACAACAGTG+TGG | - | chr3.2:86818750-86818769 | MS.gene014939:intron | 40.0% | |
| ACTTAACCGATACACACTGA+AGG | + | chr3.2:86818452-86818471 | None:intergenic | 40.0% | |
| AGAGACTAGATGGCCTAAAT+TGG | + | chr3.2:86819455-86819474 | None:intergenic | 40.0% | |
| AGATTCTTCTCAGCATATGG+TGG | - | chr3.2:86819708-86819727 | MS.gene014939:intron | 40.0% | |
| AGCAGATGATGTACCTATAG+AGG | - | chr3.2:86818151-86818170 | MS.gene014939:intron | 40.0% | |
| ATATCTTCTGGCCACATTGA+AGG | + | chr3.2:86816097-86816116 | None:intergenic | 40.0% | |
| ATCGAGCATTCACTCTTAAC+CGG | + | chr3.2:86818704-86818723 | None:intergenic | 40.0% | |
| ATCTGCTACATGTCCTTCTA+TGG | + | chr3.2:86818138-86818157 | None:intergenic | 40.0% | |
| ATGACCCAACTGTTTCATCA+TGG | + | chr3.2:86819851-86819870 | None:intergenic | 40.0% | |
| ATGCTAACAACACCAGAAAG+TGG | + | chr3.2:86817542-86817561 | None:intergenic | 40.0% | |
| ATGGGAATTCGCTTTGTAGA+TGG | + | chr3.2:86820248-86820267 | None:intergenic | 40.0% | |
| CAATTCCAACCTCCCAATTT+AGG | - | chr3.2:86819439-86819458 | MS.gene014939:intron | 40.0% | |
| CATGTTGTCATCTGGAGATT+TGG | - | chr3.2:86817619-86817638 | MS.gene014939:intron | 40.0% | |
| CATTCGTAATTGCAGGTCAT+TGG | - | chr3.2:86818297-86818316 | MS.gene014939:intron | 40.0% | |
| CCAAAATCTGCATTCTGTGT+AGG | - | chr3.2:86818020-86818039 | MS.gene014939:CDS | 40.0% | |
| CCACTTTCCAAGTTTACATG+AGG | - | chr3.2:86816798-86816817 | MS.gene014939:CDS | 40.0% | |
| CCTCATGTAAACTTGGAAAG+TGG | + | chr3.2:86816801-86816820 | None:intergenic | 40.0% | |
| CCTGGTCCAAAAATTTCGTA+GGG | + | chr3.2:86817159-86817178 | None:intergenic | 40.0% | |
| CTAAATTGGGAGGTTGGAAT+TGG | + | chr3.2:86819441-86819460 | None:intergenic | 40.0% | |
| CTCAGATGAATTCTCAGACA+TGG | - | chr3.2:86819369-86819388 | MS.gene014939:intron | 40.0% | |
| CTCCCAATGTTTCATAAGGT+AGG | + | chr3.2:86816278-86816297 | None:intergenic | 40.0% | |
| CTGTGTAGGAGTTATGAAGT+TGG | - | chr3.2:86818034-86818053 | MS.gene014939:CDS | 40.0% | |
| CTTTCCAAGTTTACATGAGG+AGG | - | chr3.2:86816801-86816820 | MS.gene014939:CDS | 40.0% | |
| GAGACTAGATGGCCTAAATT+GGG | + | chr3.2:86819454-86819473 | None:intergenic | 40.0% | |
| GAGATAAGATCTCCACTTTC+TGG | - | chr3.2:86817527-86817546 | MS.gene014939:CDS | 40.0% | |
| GATCTTTCCAAGGTTGAATC+AGG | - | chr3.2:86817668-86817687 | MS.gene014939:intron | 40.0% | |
| GATGCACTTGGAAAAGTTGT+TGG | - | chr3.2:86816576-86816595 | MS.gene014939:intron | 40.0% | |
| GCTAAGGAAGTTGGAGATAT+TGG | - | chr3.2:86816372-86816391 | MS.gene014939:CDS | 40.0% | |
| GCTTGAAGACCATCCATAAT+TGG | + | chr3.2:86820123-86820142 | None:intergenic | 40.0% | |
| GTCGAAATATTCACTGGATC+TGG | - | chr3.2:86816930-86816949 | MS.gene014939:CDS | 40.0% | |
| TAAGAAGTCAATACTCCCTC+TGG | + | chr3.2:86817212-86817231 | None:intergenic | 40.0% | |
| TACCAAATTTCGACCTAGAG+AGG | - | chr3.2:86818061-86818080 | MS.gene014939:intron | 40.0% | |
| TACCTCTCTAGGTCGAAATT+TGG | + | chr3.2:86818066-86818085 | None:intergenic | 40.0% | |
| TCAATGTGGCCAGAAGATAT+TGG | - | chr3.2:86816097-86816116 | MS.gene014939:CDS | 40.0% | |
| TCATGTCCATCTAGTACACA+TGG | + | chr3.2:86818215-86818234 | None:intergenic | 40.0% | |
| TCCTGGTCCAAAAATTTCGT+AGG | + | chr3.2:86817160-86817179 | None:intergenic | 40.0% | |
| TCTGCTTCATTCGTAATTGC+AGG | - | chr3.2:86818290-86818309 | MS.gene014939:intron | 40.0% | |
| TGCAGATTCTTCTCAGCATA+TGG | - | chr3.2:86819705-86819724 | MS.gene014939:intron | 40.0% | |
| TTCCACCACAAAACTTGACA+AGG | - | chr3.2:86817574-86817593 | MS.gene014939:CDS | 40.0% | |
| TTGAAGTCCTTCCTTCAATG+TGG | - | chr3.2:86816083-86816102 | MS.gene014939:CDS | 40.0% | |
| TTGGATGTCATGTTGTCATC+TGG | - | chr3.2:86817611-86817630 | MS.gene014939:intron | 40.0% | |
| TTTCCAACCTGATTCAACCT+TGG | + | chr3.2:86817678-86817697 | None:intergenic | 40.0% | |
| TTTCCAAGGTTGAATCAGGT+TGG | - | chr3.2:86817672-86817691 | MS.gene014939:intron | 40.0% | |
| TTTCGAGGAAACAGGCAATT+GGG | - | chr3.2:86820160-86820179 | MS.gene014939:CDS | 40.0% | |
| ! | ATTCACTGGATCTGGTGTTA+AGG | - | chr3.2:86816938-86816957 | MS.gene014939:CDS | 40.0% |
| ! | CCTACACAGAATGCAGATTT+TGG | + | chr3.2:86818023-86818042 | None:intergenic | 40.0% |
| ! | GAAACATTGGGAGTATAAGC+AGG | - | chr3.2:86816285-86816304 | MS.gene014939:intron | 40.0% |
| ! | GATTGCTGTTCAGAAAGCAA+AGG | - | chr3.2:86817325-86817344 | MS.gene014939:intron | 40.0% |
| ! | TATGAGAGCAAAGAAAGTGC+TGG | - | chr3.2:86817490-86817509 | MS.gene014939:intron | 40.0% |
| ! | TGTTGTCAATAATGGAGCAG+AGG | - | chr3.2:86819879-86819898 | MS.gene014939:CDS | 40.0% |
| ! | TTGCTCCTTGTCAAGTTTTG+TGG | + | chr3.2:86817582-86817601 | None:intergenic | 40.0% |
| ! | TTGGCTCTTGCACAACATAA+AGG | + | chr3.2:86818574-86818593 | None:intergenic | 40.0% |
| !! | ACTTTCTGGTGTTGTTAGCA+TGG | - | chr3.2:86817541-86817560 | MS.gene014939:CDS | 40.0% |
| !! | TACATATGACCTGGTTCTGA+TGG | - | chr3.2:86819924-86819943 | MS.gene014939:CDS | 40.0% |
| !! | TCTGCATAGGTTGAGTTGAT+GGG | - | chr3.2:86819250-86819269 | MS.gene014939:CDS | 40.0% |
| !! | TTCTGCATAGGTTGAGTTGA+TGG | - | chr3.2:86819249-86819268 | MS.gene014939:CDS | 40.0% |
| ACCTCAACTCTTTGTCCTGA+TGG | + | chr3.2:86816762-86816781 | None:intergenic | 45.0% | |
| ACGTCAGCTCCAATATCTTC+TGG | + | chr3.2:86816109-86816128 | None:intergenic | 45.0% | |
| ACTAGATGGCCTAAATTGGG+AGG | + | chr3.2:86819451-86819470 | None:intergenic | 45.0% | |
| AGCAAGGCAGGTGAAACAAT+TGG | - | chr3.2:86817080-86817099 | MS.gene014939:CDS | 45.0% | |
| ATTCGGTCTTTCGAGGAAAC+AGG | - | chr3.2:86820152-86820171 | MS.gene014939:CDS | 45.0% | |
| CTAGTGCTTACCGCAACAAT+GGG | + | chr3.2:86820266-86820285 | None:intergenic | 45.0% | |
| CTTTCGAGGAAACAGGCAAT+TGG | - | chr3.2:86820159-86820178 | MS.gene014939:CDS | 45.0% | |
| GAAGATATTGGAGCTGACGT+TGG | - | chr3.2:86816109-86816128 | MS.gene014939:CDS | 45.0% | |
| GCACTTGGAAAAGTTGTTGG+AGG | - | chr3.2:86816579-86816598 | MS.gene014939:intron | 45.0% | |
| GGATGTGTGCATGCCAATTA+TGG | - | chr3.2:86820107-86820126 | MS.gene014939:CDS | 45.0% | |
| GGATGTTGAGCTAAGGAAGT+TGG | - | chr3.2:86816363-86816382 | MS.gene014939:CDS | 45.0% | |
| GGGAATGGATGTAACAGATC+AGG | - | chr3.2:86817115-86817134 | MS.gene014939:CDS | 45.0% | |
| GTAGATCACGCTCGAAAGTA+TGG | - | chr3.2:86819026-86819045 | MS.gene014939:CDS | 45.0% | |
| GTGTGCATGCCAATTATGGA+TGG | - | chr3.2:86820111-86820130 | MS.gene014939:CDS | 45.0% | |
| GTGTTGCCATGTGTACTAGA+TGG | - | chr3.2:86818206-86818225 | MS.gene014939:intron | 45.0% | |
| TCCTGATGGCCAATAACAAC+AGG | + | chr3.2:86816748-86816767 | None:intergenic | 45.0% | |
| TCTAGTGCTTACCGCAACAA+TGG | + | chr3.2:86820267-86820286 | None:intergenic | 45.0% | |
| TGGGATGCTGCAAAAAATGC+CGG | - | chr3.2:86820179-86820198 | MS.gene014939:CDS | 45.0% | |
| TGTAGAACCTGTCTTCAGCA+AGG | - | chr3.2:86817064-86817083 | MS.gene014939:CDS | 45.0% | |
| TTTGAGGACGAAAGATACGG+AGG | - | chr3.2:86816406-86816425 | MS.gene014939:CDS | 45.0% | |
| ! | ATCACGCTCGAAAGTATGGT+GGG | - | chr3.2:86819030-86819049 | MS.gene014939:CDS | 45.0% |
| ! | CACAGAATGCAGATTTTGGG+AGG | + | chr3.2:86818019-86818038 | None:intergenic | 45.0% |
| ! | TCCTGTTGTTATTGGCCATC+AGG | - | chr3.2:86816744-86816763 | MS.gene014939:CDS | 45.0% |
| ! | TGTCAATAATGGAGCAGAGG+CGG | - | chr3.2:86819882-86819901 | MS.gene014939:CDS | 45.0% |
| !! | CCCTACGAAATTTTTGGACC+AGG | - | chr3.2:86817156-86817175 | MS.gene014939:CDS | 45.0% |
| !! | CTCCTTGTCAAGTTTTGTGG+TGG | + | chr3.2:86817579-86817598 | None:intergenic | 45.0% |
| !! | GAATGCAGATTTTGGGAGGT+AGG | + | chr3.2:86818015-86818034 | None:intergenic | 45.0% |
| !! | GATACAGGCATTGGAATACC+AGG | - | chr3.2:86818791-86818810 | MS.gene014939:intron | 45.0% |
| ATACGGAGGCCATAAACGAC+CGG | - | chr3.2:86816420-86816439 | MS.gene014939:intron | 50.0% | |
| CAAGCGATCGAGACCTTGTA+TGG | + | chr3.2:86819334-86819353 | None:intergenic | 50.0% | |
| CAAGGAGCAAAGACAGCTGT+TGG | - | chr3.2:86817592-86817611 | MS.gene014939:CDS | 50.0% | |
| CTTCTGGCCACATTGAAGGA+AGG | + | chr3.2:86816093-86816112 | None:intergenic | 50.0% | |
| GATGGCCTAAATTGGGAGGT+TGG | + | chr3.2:86819447-86819466 | None:intergenic | 50.0% | |
| GCCATCAGGACAAAGAGTTG+AGG | - | chr3.2:86816758-86816777 | MS.gene014939:CDS | 50.0% | |
| GCTCATGCATGGTTCCAGAA+TGG | - | chr3.2:86819679-86819698 | MS.gene014939:intron | 50.0% | |
| GGGTAGACTTTGCTCGATTC+CGG | + | chr3.2:86820201-86820220 | None:intergenic | 50.0% | |
| TCAGCGCTGTACATATGACC+TGG | - | chr3.2:86819915-86819934 | MS.gene014939:CDS | 50.0% | |
| ! | CTCGAAAGTATGGTGGGACA+GGG | - | chr3.2:86819036-86819055 | MS.gene014939:CDS | 50.0% |
| ! | GATCACGCTCGAAAGTATGG+TGG | - | chr3.2:86819029-86819048 | MS.gene014939:CDS | 50.0% |
| !! | GCATAGGTTGAGTTGATGGG+AGG | - | chr3.2:86819253-86819272 | MS.gene014939:CDS | 50.0% |
| ATGATGCTGCGGCTGTCTGA+AGG | + | chr3.2:86818100-86818119 | None:intergenic | 55.0% | |
| CTCCGCTGGAAGAGACTAGA+TGG | + | chr3.2:86819465-86819484 | None:intergenic | 55.0% | |
| CTCGATGAACGGAGACACAG+AGG | - | chr3.2:86818718-86818737 | MS.gene014939:intron | 55.0% | |
| GAAACAGCGAGCGATGCACT+TGG | - | chr3.2:86816564-86816583 | MS.gene014939:intron | 55.0% | |
| GAACCTGTCTTCAGCAAGGC+AGG | - | chr3.2:86817068-86817087 | MS.gene014939:CDS | 55.0% | |
| GGCCATCTAGTCTCTTCCAG+CGG | - | chr3.2:86819460-86819479 | MS.gene014939:CDS | 55.0% | |
| GTGAGTTCTGTTTGCTCCGC+TGG | + | chr3.2:86819479-86819498 | None:intergenic | 55.0% | |
| TCACCTGCCTTGCTGAAGAC+AGG | + | chr3.2:86817074-86817093 | None:intergenic | 55.0% | |
| ! | AAGTATGGTGGGACAGGGCT+AGG | - | chr3.2:86819041-86819060 | MS.gene014939:CDS | 55.0% |
| ! | GCTCGAAAGTATGGTGGGAC+AGG | - | chr3.2:86819035-86819054 | MS.gene014939:CDS | 55.0% |
| GGAGTATAAGCAGGCGAGCG+TGG | - | chr3.2:86816294-86816313 | MS.gene014939:intron | 60.0% | |
| TGGAGCAGAGGCGGTGCGTG+CGG | - | chr3.2:86819891-86819910 | MS.gene014939:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 86816049 | 86820546 | 86816049 | ID=MS.gene014939 |
| chr3.2 | mRNA | 86816049 | 86820546 | 86816049 | ID=MS.gene014939.t1;Parent=MS.gene014939 |
| chr3.2 | exon | 86819773 | 86820546 | 86819773 | ID=MS.gene014939.t1.exon1;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86819773 | 86820546 | 86819773 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86819459 | 86819686 | 86819459 | ID=MS.gene014939.t1.exon2;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86819459 | 86819686 | 86819459 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86819215 | 86819308 | 86819215 | ID=MS.gene014939.t1.exon3;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86819215 | 86819308 | 86819215 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86818906 | 86819112 | 86818906 | ID=MS.gene014939.t1.exon4;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86818906 | 86819112 | 86818906 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86818423 | 86818553 | 86818423 | ID=MS.gene014939.t1.exon5;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86818423 | 86818553 | 86818423 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86818234 | 86818283 | 86818234 | ID=MS.gene014939.t1.exon6;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86818234 | 86818283 | 86818234 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86817783 | 86818066 | 86817783 | ID=MS.gene014939.t1.exon7;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86817783 | 86818066 | 86817783 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86817510 | 86817613 | 86817510 | ID=MS.gene014939.t1.exon8;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86817510 | 86817613 | 86817510 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86816650 | 86817336 | 86816650 | ID=MS.gene014939.t1.exon9;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86816650 | 86817336 | 86816650 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86816321 | 86816428 | 86816321 | ID=MS.gene014939.t1.exon10;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86816321 | 86816428 | 86816321 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| chr3.2 | exon | 86816049 | 86816141 | 86816049 | ID=MS.gene014939.t1.exon11;Parent=MS.gene014939.t1 |
| chr3.2 | CDS | 86816049 | 86816141 | 86816049 | ID=cds.MS.gene014939.t1;Parent=MS.gene014939.t1 |
| Gene Sequence |
| Protein sequence |
