AlfalfaGEDB | MS.gene014987

M. sativa cultivar XinJiangDaYe / MS.gene014987

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014987.t1	AES73439.1	85.2	507	55	5	1	500	5	498	4.70E-220	773.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014987.t1	O81791	50.0	72	34	1	395	466	240	309	3.7e-08	61.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014987.t1	G7J8D2	85.2	507	55	5	1	500	5	498	3.4e-220	773.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene014987.t1	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014987.t1	MTR_3g104830	86.588	507	48	5	1	500	5	498	0.0	872
MS.gene014987.t1	MTR_3g465110	51.799	556	187	14	1	499	10	541	2.54e-159	464
MS.gene014987.t1	MTR_5g024070	50.725	69	32	1	395	463	199	265	3.77e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014987.t1	AT5G16100	32.721	272	128	11	260	484	177	440	3.68e-33	131

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Find 103 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGGAATCTGAATTGC+AGG	0.401372	3.2:+86571277	None:intergenic
AAAAGCTTGAGATTCATGGA+AGG	0.617730	3.2:-86571038	MS.gene014987:CDS
AAAATGATTAAACATTGTGG+TGG	0.599399	3.2:-86569979	MS.gene014987:CDS
AAATACGGGGTTACTGTGGG+TGG	0.632071	3.2:+86571217	None:intergenic
AACTGCGGGCACTTAATCAA+TGG	0.515958	3.2:-86571240	MS.gene014987:CDS
AAGAAAACTTGTCGTAAAGC+AGG	0.469657	3.2:-86570223	MS.gene014987:CDS
AAGGACAGGATACAGAGGCA+AGG	0.639471	3.2:-86570038	MS.gene014987:CDS
AATCATTTGATAAACTGATG+GGG	0.687280	3.2:+86570966	None:intergenic
AATCTTATTCAAAATAATTC+AGG	0.275363	3.2:-86570669	MS.gene014987:intron
ACCAAAATGATTAAACATTG+TGG	0.587437	3.2:-86569982	MS.gene014987:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAGAAAATTGGGTCAA+TGG	+	chr3.2:86569973-86569992	None:intergenic	30.0%
CAAACTCAGCATAACAATAA+TGG	-	chr3.2:86570071-86570090	MS.gene014987:CDS	30.0%
CACCATGAATATATTCAACA+TGG	-	chr3.2:86570377-86570396	MS.gene014987:intron	30.0%
GGCAATACAATGGAATTAAA+TGG	+	chr3.2:86570224-86570243	None:intergenic	30.0%
GTAATTTGATCTGCTTCAAA+AGG	+	chr3.2:86571827-86571846	None:intergenic	30.0%
GTCTCATAAAATTCAGACAT+TGG	+	chr3.2:86571168-86571187	None:intergenic	30.0%
TATGTTTACAGATGAATTGG+TGG	-	chr3.2:86571390-86571409	MS.gene014987:CDS	30.0%
TATTGTTATGCTGAGTTTGT+TGG	+	chr3.2:86570070-86570089	None:intergenic	30.0%
TCATATTGATCTTGAACCAT+TGG	+	chr3.2:86570512-86570531	None:intergenic	30.0%
TGACAACAACTGCAAAAATA+CGG	+	chr3.2:86570701-86570720	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	86569930	86571992	86569930	ID=MS.gene014987
chr3.2	mRNA	86569930	86571992	86569930	ID=MS.gene014987.t1;Parent=MS.gene014987
chr3.2	exon	86571173	86571992	86571173	ID=MS.gene014987.t1.exon1;Parent=MS.gene014987.t1
chr3.2	CDS	86571173	86571992	86571173	ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1
chr3.2	exon	86570964	86571072	86570964	ID=MS.gene014987.t1.exon2;Parent=MS.gene014987.t1
chr3.2	CDS	86570964	86571072	86570964	ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1
chr3.2	exon	86570670	86570848	86570670	ID=MS.gene014987.t1.exon3;Parent=MS.gene014987.t1
chr3.2	CDS	86570670	86570848	86570670	ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1
chr3.2	exon	86570460	86570521	86570460	ID=MS.gene014987.t1.exon4;Parent=MS.gene014987.t1
chr3.2	CDS	86570460	86570521	86570460	ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1
chr3.2	exon	86570198	86570353	86570198	ID=MS.gene014987.t1.exon5;Parent=MS.gene014987.t1
chr3.2	CDS	86570198	86570353	86570198	ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1
chr3.2	exon	86569930	86570106	86569930	ID=MS.gene014987.t1.exon6;Parent=MS.gene014987.t1
chr3.2	CDS	86569930	86570106	86569930	ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1

Gene Sequence

>MS.gene014987

ATGGAAGATGAAGATCTCATGTTTGACTGCTTCGAAAATTCCATTGACCCAATTTTCTTCAATACAAATAACCCAACACTAGCAGATTTATCCTCCATTGATAAAAATAACAACAATGTGGGTCCCACTGCACCGTCCCAACAAACTCAGCATAACAATAATGGACCCCACCAAAATCATCATGGAGTTGGAATAGTTAGTAATTTTAATGATCTTTTTTCCACTCCACCATCCCAAGAAAATTACTACGGACTTGGAATACTTGGTGGTAGTAATAATAATGGAAATGATCCATTTAATTCCATTGTATTGCCACAACAGAACCAGAGTGGTAATAATGATCCATTTGCTTACAATTTAGAATCACCAGAAAATGATCATCATATTCAACAAGTGCATGGTGGTAGTAATGATCCGTTTATGTTCAATTTAGTACCGCCAGAAAATCACCATGAATATATTCAACATGGGCAGAGTGGTAATACTGATTCATTTGCGGATGTTATGTTACAACAAAATCACCATGATGTACAACAACATGGACATGGACATGGTAGTACAAATGAAACATTTTCTGCTCCAATGGTTCAAGATCAATATGATCAAAACAATAATAATTTTTCATTTGGAATAAATAGCCTTGAAGTGGATGGTAGTTCATCAAGAATGTATGAGAATCAACAACAAAGTATACCTGCAATTCAGATTCCCGTTTTGTTGAACCAAACCGAACTGCGGGCACTTAATCAATGGCCACCCACAGTAACCCCGTATTTTTGCAGTTGTTGTCAAGTTCTCAGAGAAATCATACACACTGATGGTTAGTTTTTAATTAATTAATGAATATGAAATTAATGCCCATGTTTCTATTATTTTGATATATATATATATATATATATATTTATTTGAATTATTTATAGGTATGCAATTTGAAAAGCTTGAGATTCATGGAAGGTTGGCGTTGATTACACATGCAATTCACCATCAGATACCTGTTAATGGGGCCCCATCAGTTTATCAAATGATTGAGTATGTTCCAAGTCTTAGTATAGTACTACATTAATTTCTTTAATATATTTTTTTTGTGATTTTAAAATTGTCACATTTGAATAATAAGAATAAGAATTGAAAACTTTTGTAACAGTTTTTGTGGGAAAAGCCTTGGTGAAATAAAGAATTTTTTGGCACAGTACTGTGTGGAACGTCATTTAGCAGGATACATTCTTATGCAAGATCCAATGTCTGAATTTTATGAGACTCTTTGCACTGGATTGGATTGGATTGATGATATTAATATGGAGAATCTTATTCAAAATAATTCAGGTTTGTCCTGGAAATCACGACGGAAAAGGAAAAAAAGTACTTTTGTATTTAGTAATTGTATTTGTATTTATTTAATCAACAATATCATTTTTATTTCTTTTCATTCATGTGACATTGGGTTAAGTTTGAGTGGTTCTTATGTTTACAGATGAATTGGTGGAGCAAGAGCAAATGGGTGATAATGGAACGCCTAGGAACCTCTCAGAACAAGTAATAATATATACTGCTCTTATGTTTTCTTGAACAATAAATAATGAATATATCGTAGTTGCATGCATGTTATGTAACTTATGTTATACCCTATTGTATTGAACAGAGGAAAAAATCTGCAAAACTGAAATTGAGTGATTTATGTGATTACTTTCATCTACCTATTGATGAAGCAGCAGATCATGAGAAAGTGAAGTTATGTCCAACAGTTCTCAAGAAAACTTGTCGTAAAGCAGGGTTACCCAGATGGCCCCACAGAAAGGTAAAAGTCTTTCTTGTGTGTTATACTTATTTGGTACTGTCAAATGAATATTTCCTTTTGCTAATATAATGTGTCTTAAAATTAACGACAGGTGAAAAGCCTTTTGAAGCAGATCAAATTACTAGCAAATCAATGGGAAGGACAGGATACAGAGGCAAGGGCAAGGACTGAAGGGGAAATTAAAAGCCTTCAAACCAAAATGATTAAACATTGTGGTGGACATATACCAACCGCGTTGTATGACATCGCCGCCTTCTTGCCACTTTAG

Protein sequence

>MS.gene014987.t1

MEDEDLMFDCFENSIDPIFFNTNNPTLADLSSIDKNNNNVGPTAPSQQTQHNNNGPHQNHHGVGIVSNFNDLFSTPPSQENYYGLGILGGSNNNGNDPFNSIVLPQQNQSGNNDPFAYNLESPENDHHIQQVHGGSNDPFMFNLVPPENHHEYIQHGQSGNTDSFADVMLQQNHHDVQQHGHGHGSTNETFSAPMVQDQYDQNNNNFSFGINSLEVDGSSSRMYENQQQSIPAIQIPVLLNQTELRALNQWPPTVTPYFCSCCQVLREIIHTDGMQFEKLEIHGRLALITHAIHHQIPVNGAPSVYQMIDFCGKSLGEIKNFLAQYCVERHLAGYILMQDPMSEFYETLCTGLDWIDDINMENLIQNNSDELVEQEQMGDNGTPRNLSEQRKKSAKLKLSDLCDYFHLPIDEAADHEKVKLCPTVLKKTCRKAGLPRWPHRKVKSLLKQIKLLANQWEGQDTEARARTEGEIKSLQTKMIKHCGGHIPTALYDIAAFLPL