Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014987.t1 | AES73439.1 | 85.2 | 507 | 55 | 5 | 1 | 500 | 5 | 498 | 4.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014987.t1 | O81791 | 50.0 | 72 | 34 | 1 | 395 | 466 | 240 | 309 | 3.7e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014987.t1 | G7J8D2 | 85.2 | 507 | 55 | 5 | 1 | 500 | 5 | 498 | 3.4e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014987.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014987.t1 | MTR_3g104830 | 86.588 | 507 | 48 | 5 | 1 | 500 | 5 | 498 | 0.0 | 872 |
| MS.gene014987.t1 | MTR_3g465110 | 51.799 | 556 | 187 | 14 | 1 | 499 | 10 | 541 | 2.54e-159 | 464 |
| MS.gene014987.t1 | MTR_5g024070 | 50.725 | 69 | 32 | 1 | 395 | 463 | 199 | 265 | 3.77e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014987.t1 | AT5G16100 | 32.721 | 272 | 128 | 11 | 260 | 484 | 177 | 440 | 3.68e-33 | 131 |
Find 103 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACAATGTTTAATCATTT+TGG | 0.139096 | 3.2:+86569981 | None:intergenic |
| TTATTTGTATTGAAGAAAAT+TGG | 0.180307 | 3.2:+86571922 | None:intergenic |
| TACCTTTCTGTGGGGCCATC+TGG | 0.198703 | 3.2:+86570195 | None:intergenic |
| TTCCAACTCCATGATGATTT+TGG | 0.207331 | 3.2:+86571800 | None:intergenic |
| AATCTTATTCAAAATAATTC+AGG | 0.275363 | 3.2:-86570669 | MS.gene014987:intron |
| GGCAATACAATGGAATTAAA+TGG | 0.280054 | 3.2:+86571679 | None:intergenic |
| CACCATCAGATACCTGTTAA+TGG | 0.281140 | 3.2:-86570991 | MS.gene014987:CDS |
| TTTGAAAAGCTTGAGATTCA+TGG | 0.294484 | 3.2:-86571042 | MS.gene014987:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.313839 | 3.2:-86570694 | MS.gene014987:CDS |
| CTTGGTGGTAGTAATAATAA+TGG | 0.330532 | 3.2:-86571709 | MS.gene014987:CDS |
| ACCATCAGATACCTGTTAAT+GGG | 0.352749 | 3.2:-86570990 | MS.gene014987:CDS |
| ACTGATGGGGCCCCATTAAC+AGG | 0.356308 | 3.2:+86570979 | None:intergenic |
| CAAACTCAGCATAACAATAA+TGG | 0.360613 | 3.2:-86571829 | MS.gene014987:CDS |
| TGATCTGCTGCTTCATCAAT+AGG | 0.368145 | 3.2:+86570277 | None:intergenic |
| CAAGAGCAAATGGGTGATAA+TGG | 0.372132 | 3.2:-86570485 | MS.gene014987:CDS |
| TACTACGGACTTGGAATACT+TGG | 0.382509 | 3.2:-86571727 | MS.gene014987:CDS |
| TATTTGTATTGAAGAAAATT+GGG | 0.391850 | 3.2:+86571923 | None:intergenic |
| CTCTTTGCACTGGATTGGAT+TGG | 0.394071 | 3.2:-86570713 | MS.gene014987:CDS |
| AAAACGGGAATCTGAATTGC+AGG | 0.401372 | 3.2:+86571277 | None:intergenic |
| TATTGTTATGCTGAGTTTGT+TGG | 0.403342 | 3.2:+86571833 | None:intergenic |
| TCAAATTACTAGCAAATCAA+TGG | 0.407732 | 3.2:-86570062 | MS.gene014987:CDS |
| ATTGAAGAAAATTGGGTCAA+TGG | 0.408041 | 3.2:+86571930 | None:intergenic |
| TCTTATGTTTACAGATGAAT+TGG | 0.410262 | 3.2:-86570513 | MS.gene014987:intron |
| TCGGTTTGGTTCAACAAAAC+GGG | 0.413527 | 3.2:+86571262 | None:intergenic |
| TTGATTAAGTGCCCGCAGTT+CGG | 0.413996 | 3.2:+86571243 | None:intergenic |
| TTCGGTTTGGTTCAACAAAA+CGG | 0.419751 | 3.2:+86571261 | None:intergenic |
| GGTACTAAATTGAACATAAA+CGG | 0.419806 | 3.2:+86571556 | None:intergenic |
| GATTCTAAATTGTAAGCAAA+TGG | 0.423137 | 3.2:+86571628 | None:intergenic |
| GTAATTTGATCTGCTTCAAA+AGG | 0.424097 | 3.2:+86570076 | None:intergenic |
| TGAGACTCTTTGCACTGGAT+TGG | 0.424222 | 3.2:-86570718 | MS.gene014987:CDS |
| TCATATTGATCTTGAACCAT+TGG | 0.427179 | 3.2:+86571391 | None:intergenic |
| GCCCATGTTGAATATATTCA+TGG | 0.433051 | 3.2:+86571521 | None:intergenic |
| ACCTTTCTGTGGGGCCATCT+GGG | 0.433450 | 3.2:+86570196 | None:intergenic |
| ATGAACTACCATCCACTTCA+AGG | 0.439320 | 3.2:+86571332 | None:intergenic |
| ATTGTTATGCTGAGTTTGTT+GGG | 0.459786 | 3.2:+86571834 | None:intergenic |
| AAGAAAACTTGTCGTAAAGC+AGG | 0.469657 | 3.2:-86570223 | MS.gene014987:CDS |
| TAAGTGCCCGCAGTTCGGTT+TGG | 0.482116 | 3.2:+86571248 | None:intergenic |
| CAAGAAAATTACTACGGACT+TGG | 0.487097 | 3.2:-86571736 | MS.gene014987:CDS |
| ACTTGTTCTGAGAGGTTCCT+AGG | 0.487950 | 3.2:+86570458 | None:intergenic |
| AGGCAAGGGCAAGGACTGAA+GGG | 0.491007 | 3.2:-86570023 | MS.gene014987:CDS |
| AGCAAATCAATGGGAAGGAC+AGG | 0.496313 | 3.2:-86570052 | MS.gene014987:CDS |
| ATTGGTGGAGCAAGAGCAAA+TGG | 0.500485 | 3.2:-86570495 | MS.gene014987:CDS |
| CAAATTACTAGCAAATCAAT+GGG | 0.500638 | 3.2:-86570061 | MS.gene014987:CDS |
| TATCGCTGCTGCGGCTAAAG+TGG | 0.502806 | 3.2:+86569916 | None:intergenic |
| CACCAAAATCATCATGGAGT+TGG | 0.510235 | 3.2:-86571802 | MS.gene014987:CDS |
| GAGGATAAATCTGCTAGTGT+TGG | 0.513032 | 3.2:+86571898 | None:intergenic |
| TATGTTTACAGATGAATTGG+TGG | 0.515772 | 3.2:-86570510 | MS.gene014987:intron |
| AACTGCGGGCACTTAATCAA+TGG | 0.515958 | 3.2:-86571240 | MS.gene014987:CDS |
| TTACCACTCTGGTTCTGTTG+TGG | 0.520379 | 3.2:+86571658 | None:intergenic |
| GAGGCAAGGGCAAGGACTGA+AGG | 0.520542 | 3.2:-86570024 | MS.gene014987:CDS |
| TCAATCATTTGATAAACTGA+TGG | 0.522363 | 3.2:+86570964 | None:intergenic |
| GTCTCATAAAATTCAGACAT+TGG | 0.526543 | 3.2:+86570735 | None:intergenic |
| AGGATAAATCTGCTAGTGTT+GGG | 0.527402 | 3.2:+86571899 | None:intergenic |
| CAATCATTTGATAAACTGAT+GGG | 0.528489 | 3.2:+86570965 | None:intergenic |
| CACCATGAATATATTCAACA+TGG | 0.530162 | 3.2:-86571523 | MS.gene014987:CDS |
| TACGGACTTGGAATACTTGG+TGG | 0.531875 | 3.2:-86571724 | MS.gene014987:CDS |
| GCTTGAGATTCATGGAAGGT+TGG | 0.532570 | 3.2:-86571034 | MS.gene014987:CDS |
| TGGTAATACTGATTCATTTG+CGG | 0.535662 | 3.2:-86571494 | MS.gene014987:CDS |
| TGGAATAAATAGCCTTGAAG+TGG | 0.539422 | 3.2:-86571344 | MS.gene014987:CDS |
| GTTGAACCAAACCGAACTGC+GGG | 0.542214 | 3.2:-86571254 | MS.gene014987:CDS |
| CTGCGGCTAAAGTGGCAAGA+AGG | 0.552292 | 3.2:+86569924 | None:intergenic |
| ATGGATCATTATTACCACTC+TGG | 0.558050 | 3.2:+86571647 | None:intergenic |
| AGTTTGTTGGGACGGTGCAG+TGG | 0.561780 | 3.2:+86571846 | None:intergenic |
| ACCCAGATGGCCCCACAGAA+AGG | 0.563782 | 3.2:-86570197 | MS.gene014987:intron |
| CCCCATTAACAGGTATCTGA+TGG | 0.567348 | 3.2:+86570989 | None:intergenic |
| GTAAAGCAGGGTTACCCAGA+TGG | 0.568095 | 3.2:-86570210 | MS.gene014987:CDS |
| TGTGTGGAACGTCATTTAGC+AGG | 0.571153 | 3.2:-86570777 | MS.gene014987:CDS |
| GTCCATGTTGTTGTACATCA+TGG | 0.572620 | 3.2:+86571449 | None:intergenic |
| TTATGCTGAGTTTGTTGGGA+CGG | 0.575049 | 3.2:+86571838 | None:intergenic |
| GGACCCCACCAAAATCATCA+TGG | 0.578955 | 3.2:-86571808 | MS.gene014987:CDS |
| AGAAAACTTGTCGTAAAGCA+GGG | 0.586540 | 3.2:-86570222 | MS.gene014987:CDS |
| ACCAAAATGATTAAACATTG+TGG | 0.587437 | 3.2:-86569982 | MS.gene014987:CDS |
| CGGCTAAAGTGGCAAGAAGG+CGG | 0.587716 | 3.2:+86569927 | None:intergenic |
| CACCATGATGTACAACAACA+TGG | 0.591982 | 3.2:-86571451 | MS.gene014987:CDS |
| AGGACAGGATACAGAGGCAA+GGG | 0.593438 | 3.2:-86570037 | MS.gene014987:CDS |
| AAAATGATTAAACATTGTGG+TGG | 0.599399 | 3.2:-86569979 | MS.gene014987:CDS |
| ATAAATAGCCTTGAAGTGGA+TGG | 0.603975 | 3.2:-86571340 | MS.gene014987:CDS |
| CATCATATTCAACAAGTGCA+TGG | 0.612023 | 3.2:-86571592 | MS.gene014987:CDS |
| CCATCAGATACCTGTTAATG+GGG | 0.617286 | 3.2:-86570989 | MS.gene014987:CDS |
| AAAAGCTTGAGATTCATGGA+AGG | 0.617730 | 3.2:-86571038 | MS.gene014987:CDS |
| GGCAAGGGCAAGGACTGAAG+GGG | 0.618518 | 3.2:-86570022 | MS.gene014987:CDS |
| TTACTAGCAAATCAATGGGA+AGG | 0.619972 | 3.2:-86570057 | MS.gene014987:CDS |
| TGTTGAACCAAACCGAACTG+CGG | 0.627319 | 3.2:-86571255 | MS.gene014987:CDS |
| CCATCCCAAGAAAATTACTA+CGG | 0.628814 | 3.2:-86571742 | MS.gene014987:CDS |
| CAACAACATGGACATGGACA+TGG | 0.630152 | 3.2:-86571439 | MS.gene014987:CDS |
| AGAGAAATCATACACACTGA+TGG | 0.630751 | 3.2:-86571172 | MS.gene014987:intron |
| AAATACGGGGTTACTGTGGG+TGG | 0.632071 | 3.2:+86571217 | None:intergenic |
| GCGATGTCATACAACGCGGT+TGG | 0.634750 | 3.2:+86569949 | None:intergenic |
| AGGATACAGAGGCAAGGGCA+AGG | 0.638191 | 3.2:-86570032 | MS.gene014987:CDS |
| AAGGACAGGATACAGAGGCA+AGG | 0.639471 | 3.2:-86570038 | MS.gene014987:CDS |
| GTTTGTTGGGACGGTGCAGT+GGG | 0.641780 | 3.2:+86571847 | None:intergenic |
| ATATTATTACTTGTTCTGAG+AGG | 0.643167 | 3.2:+86570450 | None:intergenic |
| TATATTCAACATGGGCAGAG+TGG | 0.643427 | 3.2:-86571514 | MS.gene014987:CDS |
| ACCATGAATATATTCAACAT+GGG | 0.645386 | 3.2:-86571522 | MS.gene014987:CDS |
| GATGTACAACAACATGGACA+TGG | 0.659086 | 3.2:-86571445 | MS.gene014987:CDS |
| GTTCTGTTGTGGCAATACAA+TGG | 0.661300 | 3.2:+86571669 | None:intergenic |
| AATCATTTGATAAACTGATG+GGG | 0.687280 | 3.2:+86570966 | None:intergenic |
| TTGGTGGAGCAAGAGCAAAT+GGG | 0.694143 | 3.2:-86570494 | MS.gene014987:CDS |
| CATATTCAACAAGTGCATGG+TGG | 0.702624 | 3.2:-86571589 | MS.gene014987:CDS |
| ATGGGAAGGACAGGATACAG+AGG | 0.708986 | 3.2:-86570043 | MS.gene014987:CDS |
| TGGGTGATAATGGAACGCCT+AGG | 0.709329 | 3.2:-86570475 | MS.gene014987:CDS |
| TTGCCACAACAGAACCAGAG+TGG | 0.723246 | 3.2:-86571661 | MS.gene014987:CDS |
| GGCGGCGATGTCATACAACG+CGG | 0.812023 | 3.2:+86569945 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATAATAATTTTTCATT+TGG | - | chr3.2:86570536-86570555 | MS.gene014987:intron | 10.0% |
| !! | AATCTTATTCAAAATAATTC+AGG | - | chr3.2:86571231-86571250 | MS.gene014987:CDS | 15.0% |
| !! | ATATCAAAATAATAGAAACA+TGG | + | chr3.2:86570791-86570810 | None:intergenic | 15.0% |
| !! | TATCAAAATAATAGAAACAT+GGG | + | chr3.2:86570790-86570809 | None:intergenic | 15.0% |
| !! | TATTTGTATTGAAGAAAATT+GGG | + | chr3.2:86569980-86569999 | None:intergenic | 15.0% |
| !! | TTATTTGTATTGAAGAAAAT+TGG | + | chr3.2:86569981-86570000 | None:intergenic | 15.0% |
| !!! | ATTGTTGTTATTTTTATCAA+TGG | + | chr3.2:86570027-86570046 | None:intergenic | 15.0% |
| !! | GATAAAAATAACAACAATGT+GGG | - | chr3.2:86570029-86570048 | MS.gene014987:CDS | 20.0% |
| !! | TGATAAAAATAACAACAATG+TGG | - | chr3.2:86570028-86570047 | MS.gene014987:CDS | 20.0% |
| !!! | AAAAATTCTTTATTTCACCA+AGG | + | chr3.2:86571092-86571111 | None:intergenic | 20.0% |
| !!! | TGGTGAAATAAAGAATTTTT+TGG | - | chr3.2:86571092-86571111 | MS.gene014987:intron | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | - | chr3.2:86571206-86571225 | MS.gene014987:CDS | 20.0% |
| ! | AAAATGATTAAACATTGTGG+TGG | - | chr3.2:86571921-86571940 | MS.gene014987:CDS | 25.0% |
| ! | AATCATTTGATAAACTGATG+GGG | + | chr3.2:86570937-86570956 | None:intergenic | 25.0% |
| ! | ACCAAAATGATTAAACATTG+TGG | - | chr3.2:86571918-86571937 | MS.gene014987:CDS | 25.0% |
| ! | ACCATGAATATATTCAACAT+GGG | - | chr3.2:86570378-86570397 | MS.gene014987:intron | 25.0% |
| ! | AGACACATTATATTAGCAAA+AGG | + | chr3.2:86571781-86571800 | None:intergenic | 25.0% |
| ! | CAAATTACTAGCAAATCAAT+GGG | - | chr3.2:86571839-86571858 | MS.gene014987:CDS | 25.0% |
| ! | CAATCATTTGATAAACTGAT+GGG | + | chr3.2:86570938-86570957 | None:intergenic | 25.0% |
| ! | GATTCTAAATTGTAAGCAAA+TGG | + | chr3.2:86570275-86570294 | None:intergenic | 25.0% |
| ! | GGTACTAAATTGAACATAAA+CGG | + | chr3.2:86570347-86570366 | None:intergenic | 25.0% |
| ! | TCAAATTACTAGCAAATCAA+TGG | - | chr3.2:86571838-86571857 | MS.gene014987:CDS | 25.0% |
| ! | TCAATCATTTGATAAACTGA+TGG | + | chr3.2:86570939-86570958 | None:intergenic | 25.0% |
| ! | TCTTATGTTTACAGATGAAT+TGG | - | chr3.2:86571387-86571406 | MS.gene014987:CDS | 25.0% |
| ! | TCTTGTGTGTTATACTTATT+TGG | - | chr3.2:86571736-86571755 | MS.gene014987:CDS | 25.0% |
| !! | AACTTTTGTAACAGTTTTTG+TGG | - | chr3.2:86571060-86571079 | MS.gene014987:intron | 25.0% |
| !! | ACCACAATGTTTAATCATTT+TGG | + | chr3.2:86571922-86571941 | None:intergenic | 25.0% |
| !! | ACTTTTGTAACAGTTTTTGT+GGG | - | chr3.2:86571061-86571080 | MS.gene014987:intron | 25.0% |
| !! | ATATATTCATGGTGATTTTC+TGG | + | chr3.2:86570371-86570390 | None:intergenic | 25.0% |
| !! | ATATTATTACTTGTTCTGAG+AGG | + | chr3.2:86571453-86571472 | None:intergenic | 25.0% |
| !! | TGAATATGATGATCATTTTC+TGG | + | chr3.2:86570299-86570318 | None:intergenic | 25.0% |
| !!! | GTTGTTATTTTTATCAATGG+AGG | + | chr3.2:86570024-86570043 | None:intergenic | 25.0% |
| !!! | GTTTAATCATTTTGGTTTGA+AGG | + | chr3.2:86571914-86571933 | None:intergenic | 25.0% |
| ATTGAAGAAAATTGGGTCAA+TGG | + | chr3.2:86569973-86569992 | None:intergenic | 30.0% | |
| CAAACTCAGCATAACAATAA+TGG | - | chr3.2:86570071-86570090 | MS.gene014987:CDS | 30.0% | |
| CACCATGAATATATTCAACA+TGG | - | chr3.2:86570377-86570396 | MS.gene014987:intron | 30.0% | |
| GGCAATACAATGGAATTAAA+TGG | + | chr3.2:86570224-86570243 | None:intergenic | 30.0% | |
| GTAATTTGATCTGCTTCAAA+AGG | + | chr3.2:86571827-86571846 | None:intergenic | 30.0% | |
| GTCTCATAAAATTCAGACAT+TGG | + | chr3.2:86571168-86571187 | None:intergenic | 30.0% | |
| TATGTTTACAGATGAATTGG+TGG | - | chr3.2:86571390-86571409 | MS.gene014987:CDS | 30.0% | |
| TATTGTTATGCTGAGTTTGT+TGG | + | chr3.2:86570070-86570089 | None:intergenic | 30.0% | |
| TCATATTGATCTTGAACCAT+TGG | + | chr3.2:86570512-86570531 | None:intergenic | 30.0% | |
| TGACAACAACTGCAAAAATA+CGG | + | chr3.2:86570701-86570720 | None:intergenic | 30.0% | |
| TGTAGTACTATACTAAGACT+TGG | + | chr3.2:86570969-86570988 | None:intergenic | 30.0% | |
| TGTGTCTTAAAATTAACGAC+AGG | - | chr3.2:86571794-86571813 | MS.gene014987:CDS | 30.0% | |
| TTCCTCTGTTCAATACAATA+GGG | + | chr3.2:86571554-86571573 | None:intergenic | 30.0% | |
| TTTCCTCTGTTCAATACAAT+AGG | + | chr3.2:86571555-86571574 | None:intergenic | 30.0% | |
| TTTGAAAAGCTTGAGATTCA+TGG | - | chr3.2:86570858-86570877 | MS.gene014987:intron | 30.0% | |
| ! | AAAATAATTCAGGTTTGTCC+TGG | - | chr3.2:86571241-86571260 | MS.gene014987:CDS | 30.0% |
| ! | AAAGACTTTTACCTTTCTGT+GGG | + | chr3.2:86571717-86571736 | None:intergenic | 30.0% |
| ! | AAGTCCGTAGTAATTTTCTT+GGG | + | chr3.2:86570165-86570184 | None:intergenic | 30.0% |
| ! | ATTGTTATGCTGAGTTTGTT+GGG | + | chr3.2:86570069-86570088 | None:intergenic | 30.0% |
| ! | CTTGGTGGTAGTAATAATAA+TGG | - | chr3.2:86570191-86570210 | MS.gene014987:intron | 30.0% |
| ! | CTTTTCATTCATGTGACATT+GGG | - | chr3.2:86571349-86571368 | MS.gene014987:CDS | 30.0% |
| ! | TCTTTTCATTCATGTGACAT+TGG | - | chr3.2:86571348-86571367 | MS.gene014987:CDS | 30.0% |
| !! | TGGTAATACTGATTCATTTG+CGG | - | chr3.2:86570406-86570425 | MS.gene014987:intron | 30.0% |
| AAAAGCTTGAGATTCATGGA+AGG | - | chr3.2:86570862-86570881 | MS.gene014987:intron | 35.0% | |
| AAGAAAACTTGTCGTAAAGC+AGG | - | chr3.2:86571677-86571696 | MS.gene014987:CDS | 35.0% | |
| ACAACAACTGCAAAAATACG+GGG | + | chr3.2:86570699-86570718 | None:intergenic | 35.0% | |
| ACCATCAGATACCTGTTAAT+GGG | - | chr3.2:86570910-86570929 | MS.gene014987:intron | 35.0% | |
| AGAAAACTTGTCGTAAAGCA+GGG | - | chr3.2:86571678-86571697 | MS.gene014987:CDS | 35.0% | |
| AGAGAAATCATACACACTGA+TGG | - | chr3.2:86570728-86570747 | MS.gene014987:CDS | 35.0% | |
| AGGATAAATCTGCTAGTGTT+GGG | + | chr3.2:86570004-86570023 | None:intergenic | 35.0% | |
| ATGGATCATTATTACCACTC+TGG | + | chr3.2:86570256-86570275 | None:intergenic | 35.0% | |
| CAAGAAAATTACTACGGACT+TGG | - | chr3.2:86570164-86570183 | MS.gene014987:intron | 35.0% | |
| CATCATATTCAACAAGTGCA+TGG | - | chr3.2:86570308-86570327 | MS.gene014987:CDS | 35.0% | |
| CCATCCCAAGAAAATTACTA+CGG | - | chr3.2:86570158-86570177 | MS.gene014987:intron | 35.0% | |
| GACAACAACTGCAAAAATAC+GGG | + | chr3.2:86570700-86570719 | None:intergenic | 35.0% | |
| GCCCATGTTGAATATATTCA+TGG | + | chr3.2:86570382-86570401 | None:intergenic | 35.0% | |
| TACCCTATTGTATTGAACAG+AGG | - | chr3.2:86571549-86571568 | MS.gene014987:CDS | 35.0% | |
| TTACTAGCAAATCAATGGGA+AGG | - | chr3.2:86571843-86571862 | MS.gene014987:CDS | 35.0% | |
| ! | AAGACTTTTACCTTTCTGTG+GGG | + | chr3.2:86571716-86571735 | None:intergenic | 35.0% |
| ! | ATAAATAGCCTTGAAGTGGA+TGG | - | chr3.2:86570560-86570579 | MS.gene014987:intron | 35.0% |
| ! | CAAGTCCGTAGTAATTTTCT+TGG | + | chr3.2:86570166-86570185 | None:intergenic | 35.0% |
| ! | CAAGTTTTCTTGAGAACTGT+TGG | + | chr3.2:86571668-86571687 | None:intergenic | 35.0% |
| ! | GAAAGACTTTTACCTTTCTG+TGG | + | chr3.2:86571718-86571737 | None:intergenic | 35.0% |
| ! | TAGTAATTTTCTTGGGATGG+TGG | + | chr3.2:86570158-86570177 | None:intergenic | 35.0% |
| ! | TATTCATGGTGATTTTCTGG+CGG | + | chr3.2:86570368-86570387 | None:intergenic | 35.0% |
| ! | TGAAACATTTTCTGCTCCAA+TGG | - | chr3.2:86570493-86570512 | MS.gene014987:CDS | 35.0% |
| ! | TGGAATAAATAGCCTTGAAG+TGG | - | chr3.2:86570556-86570575 | MS.gene014987:intron | 35.0% |
| ! | TTCCAACTCCATGATGATTT+TGG | + | chr3.2:86570103-86570122 | None:intergenic | 35.0% |
| ! | TTTTATGAGACTCTTTGCAC+TGG | - | chr3.2:86571177-86571196 | MS.gene014987:CDS | 35.0% |
| !! | AACTCCATGATGATTTTGGT+GGG | + | chr3.2:86570099-86570118 | None:intergenic | 35.0% |
| !! | TTCGGTTTGGTTCAACAAAA+CGG | + | chr3.2:86570642-86570661 | None:intergenic | 35.0% |
| AAAACGGGAATCTGAATTGC+AGG | + | chr3.2:86570626-86570645 | None:intergenic | 40.0% | |
| ATGAACTACCATCCACTTCA+AGG | + | chr3.2:86570571-86570590 | None:intergenic | 40.0% | |
| CAAAAATACGGGGTTACTGT+GGG | + | chr3.2:86570689-86570708 | None:intergenic | 40.0% | |
| CAAGAGCAAATGGGTGATAA+TGG | - | chr3.2:86571415-86571434 | MS.gene014987:CDS | 40.0% | |
| CACCAAAATCATCATGGAGT+TGG | - | chr3.2:86570098-86570117 | MS.gene014987:intron | 40.0% | |
| CACCATCAGATACCTGTTAA+TGG | - | chr3.2:86570909-86570928 | MS.gene014987:intron | 40.0% | |
| CACCATGATGTACAACAACA+TGG | - | chr3.2:86570449-86570468 | MS.gene014987:intron | 40.0% | |
| CATATTCAACAAGTGCATGG+TGG | - | chr3.2:86570311-86570330 | MS.gene014987:CDS | 40.0% | |
| CCATCAGATACCTGTTAATG+GGG | - | chr3.2:86570911-86570930 | MS.gene014987:intron | 40.0% | |
| GACATTGGGTTAAGTTTGAG+TGG | - | chr3.2:86571363-86571382 | MS.gene014987:CDS | 40.0% | |
| GAGGATAAATCTGCTAGTGT+TGG | + | chr3.2:86570005-86570024 | None:intergenic | 40.0% | |
| GATGTACAACAACATGGACA+TGG | - | chr3.2:86570455-86570474 | MS.gene014987:intron | 40.0% | |
| GTCCATGTTGTTGTACATCA+TGG | + | chr3.2:86570454-86570473 | None:intergenic | 40.0% | |
| GTTCTGTTGTGGCAATACAA+TGG | + | chr3.2:86570234-86570253 | None:intergenic | 40.0% | |
| TACTACGGACTTGGAATACT+TGG | - | chr3.2:86570173-86570192 | MS.gene014987:intron | 40.0% | |
| TATATTCAACATGGGCAGAG+TGG | - | chr3.2:86570386-86570405 | MS.gene014987:intron | 40.0% | |
| ! | AGTTTTTGTGGGAAAAGCCT+TGG | - | chr3.2:86571072-86571091 | MS.gene014987:intron | 40.0% |
| ! | CAACTCCATGATGATTTTGG+TGG | + | chr3.2:86570100-86570119 | None:intergenic | 40.0% |
| ! | CCGTAGTAATTTTCTTGGGA+TGG | + | chr3.2:86570161-86570180 | None:intergenic | 40.0% |
| ! | TGATCTGCTGCTTCATCAAT+AGG | + | chr3.2:86571626-86571645 | None:intergenic | 40.0% |
| !! | ACTCCATGATGATTTTGGTG+GGG | + | chr3.2:86570098-86570117 | None:intergenic | 40.0% |
| !! | TCGGTTTGGTTCAACAAAAC+GGG | + | chr3.2:86570641-86570660 | None:intergenic | 40.0% |
| !! | TTATGCTGAGTTTGTTGGGA+CGG | + | chr3.2:86570065-86570084 | None:intergenic | 40.0% |
| !!! | TTTTTTGGCACAGTACTGTG+TGG | - | chr3.2:86571107-86571126 | MS.gene014987:intron | 40.0% |
| AACTGCGGGCACTTAATCAA+TGG | - | chr3.2:86570660-86570679 | MS.gene014987:intron | 45.0% | |
| AGCAAATCAATGGGAAGGAC+AGG | - | chr3.2:86571848-86571867 | MS.gene014987:CDS | 45.0% | |
| ATTGGTGGAGCAAGAGCAAA+TGG | - | chr3.2:86571405-86571424 | MS.gene014987:CDS | 45.0% | |
| CAACAACATGGACATGGACA+TGG | - | chr3.2:86570461-86570480 | MS.gene014987:CDS | 45.0% | |
| CCCCATTAACAGGTATCTGA+TGG | + | chr3.2:86570914-86570933 | None:intergenic | 45.0% | |
| GCAAAAATACGGGGTTACTG+TGG | + | chr3.2:86570690-86570709 | None:intergenic | 45.0% | |
| GCTTGAGATTCATGGAAGGT+TGG | - | chr3.2:86570866-86570885 | MS.gene014987:intron | 45.0% | |
| GTTTGTCCTGGAAATCACGA+CGG | - | chr3.2:86571253-86571272 | MS.gene014987:CDS | 45.0% | |
| TACGGACTTGGAATACTTGG+TGG | - | chr3.2:86570176-86570195 | MS.gene014987:intron | 45.0% | |
| TGAGACTCTTTGCACTGGAT+TGG | - | chr3.2:86571182-86571201 | MS.gene014987:CDS | 45.0% | |
| TGTGTGGAACGTCATTTAGC+AGG | - | chr3.2:86571123-86571142 | MS.gene014987:intron | 45.0% | |
| TGTTGAACCAAACCGAACTG+CGG | - | chr3.2:86570645-86570664 | MS.gene014987:intron | 45.0% | |
| TTGATTAAGTGCCCGCAGTT+CGG | + | chr3.2:86570660-86570679 | None:intergenic | 45.0% | |
| TTGGTGGAGCAAGAGCAAAT+GGG | - | chr3.2:86571406-86571425 | MS.gene014987:CDS | 45.0% | |
| ! | CTCTTTGCACTGGATTGGAT+TGG | - | chr3.2:86571187-86571206 | MS.gene014987:CDS | 45.0% |
| !! | ACTTGTTCTGAGAGGTTCCT+AGG | + | chr3.2:86571445-86571464 | None:intergenic | 45.0% |
| !! | TTACCACTCTGGTTCTGTTG+TGG | + | chr3.2:86570245-86570264 | None:intergenic | 45.0% |
| !!! | ATTTTCTTGGGATGGTGGAG+TGG | + | chr3.2:86570153-86570172 | None:intergenic | 45.0% |
| !! | TATTTATTTGAATTATTTAT+AGG | - | chr3.2:86570828-86570847 | MS.gene014987:CDS | 5.0% |
| AAATACGGGGTTACTGTGGG+TGG | + | chr3.2:86570686-86570705 | None:intergenic | 50.0% | |
| AAGGACAGGATACAGAGGCA+AGG | - | chr3.2:86571862-86571881 | MS.gene014987:CDS | 50.0% | |
| AGGACAGGATACAGAGGCAA+GGG | - | chr3.2:86571863-86571882 | MS.gene014987:CDS | 50.0% | |
| ATGGGAAGGACAGGATACAG+AGG | - | chr3.2:86571857-86571876 | MS.gene014987:CDS | 50.0% | |
| CCTGGAAATCACGACGGAAA+AGG | - | chr3.2:86571259-86571278 | MS.gene014987:CDS | 50.0% | |
| GGACCCCACCAAAATCATCA+TGG | - | chr3.2:86570092-86570111 | MS.gene014987:intron | 50.0% | |
| GTAAAGCAGGGTTACCCAGA+TGG | - | chr3.2:86571690-86571709 | MS.gene014987:CDS | 50.0% | |
| GTTGAACCAAACCGAACTGC+GGG | - | chr3.2:86570646-86570665 | MS.gene014987:intron | 50.0% | |
| TTGCCACAACAGAACCAGAG+TGG | - | chr3.2:86570239-86570258 | MS.gene014987:CDS | 50.0% | |
| ! | CCTTTTCCGTCGTGATTTCC+AGG | + | chr3.2:86571262-86571281 | None:intergenic | 50.0% |
| !! | TGGGTGATAATGGAACGCCT+AGG | - | chr3.2:86571425-86571444 | MS.gene014987:CDS | 50.0% |
| ACCTTTCTGTGGGGCCATCT+GGG | + | chr3.2:86571707-86571726 | None:intergenic | 55.0% | |
| ACTGATGGGGCCCCATTAAC+AGG | + | chr3.2:86570924-86570943 | None:intergenic | 55.0% | |
| AGGATACAGAGGCAAGGGCA+AGG | - | chr3.2:86571868-86571887 | MS.gene014987:CDS | 55.0% | |
| AGGCAAGGGCAAGGACTGAA+GGG | - | chr3.2:86571877-86571896 | MS.gene014987:CDS | 55.0% | |
| GCGATGTCATACAACGCGGT+TGG | + | chr3.2:86571954-86571973 | None:intergenic | 55.0% | |
| TAAGTGCCCGCAGTTCGGTT+TGG | + | chr3.2:86570655-86570674 | None:intergenic | 55.0% | |
| TACCTTTCTGTGGGGCCATC+TGG | + | chr3.2:86571708-86571727 | None:intergenic | 55.0% | |
| ! | GTTTGTTGGGACGGTGCAGT+GGG | + | chr3.2:86570056-86570075 | None:intergenic | 55.0% |
| !! | AGTTTGTTGGGACGGTGCAG+TGG | + | chr3.2:86570057-86570076 | None:intergenic | 55.0% |
| ACCCAGATGGCCCCACAGAA+AGG | - | chr3.2:86571703-86571722 | MS.gene014987:CDS | 60.0% | |
| GAGGCAAGGGCAAGGACTGA+AGG | - | chr3.2:86571876-86571895 | MS.gene014987:CDS | 60.0% | |
| GGCAAGGGCAAGGACTGAAG+GGG | - | chr3.2:86571878-86571897 | MS.gene014987:CDS | 60.0% | |
| GGCGGCGATGTCATACAACG+CGG | + | chr3.2:86571958-86571977 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 86569930 | 86571992 | 86569930 | ID=MS.gene014987 |
| chr3.2 | mRNA | 86569930 | 86571992 | 86569930 | ID=MS.gene014987.t1;Parent=MS.gene014987 |
| chr3.2 | exon | 86571173 | 86571992 | 86571173 | ID=MS.gene014987.t1.exon1;Parent=MS.gene014987.t1 |
| chr3.2 | CDS | 86571173 | 86571992 | 86571173 | ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1 |
| chr3.2 | exon | 86570964 | 86571072 | 86570964 | ID=MS.gene014987.t1.exon2;Parent=MS.gene014987.t1 |
| chr3.2 | CDS | 86570964 | 86571072 | 86570964 | ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1 |
| chr3.2 | exon | 86570670 | 86570848 | 86570670 | ID=MS.gene014987.t1.exon3;Parent=MS.gene014987.t1 |
| chr3.2 | CDS | 86570670 | 86570848 | 86570670 | ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1 |
| chr3.2 | exon | 86570460 | 86570521 | 86570460 | ID=MS.gene014987.t1.exon4;Parent=MS.gene014987.t1 |
| chr3.2 | CDS | 86570460 | 86570521 | 86570460 | ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1 |
| chr3.2 | exon | 86570198 | 86570353 | 86570198 | ID=MS.gene014987.t1.exon5;Parent=MS.gene014987.t1 |
| chr3.2 | CDS | 86570198 | 86570353 | 86570198 | ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1 |
| chr3.2 | exon | 86569930 | 86570106 | 86569930 | ID=MS.gene014987.t1.exon6;Parent=MS.gene014987.t1 |
| chr3.2 | CDS | 86569930 | 86570106 | 86569930 | ID=cds.MS.gene014987.t1;Parent=MS.gene014987.t1 |
| Gene Sequence |
| Protein sequence |
