AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01502

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01502.t1 MTR_2g015000 96.305 406 11 1 1 402 11 416 0.0 795
MS.gene01502.t1 MTR_7g025010 45.047 424 170 18 1 391 11 404 4.12e-80 258
MS.gene01502.t1 MTR_4g088070 40.365 384 178 13 32 391 16 372 1.36e-62 207
MS.gene01502.t1 MTR_4g088080 40.214 281 123 14 36 300 31 282 1.71e-34 130
MS.gene01502.t1 MTR_6g027390 66.667 60 20 0 37 96 24 83 5.27e-23 98.6
MS.gene01502.t1 MTR_7g086940 59.341 91 36 1 29 119 13 102 2.93e-22 95.9
MS.gene01502.t1 MTR_7g086940 46.269 67 36 0 327 393 201 267 1.68e-14 73.6
MS.gene01502.t1 MTR_4g084550 37.805 82 51 0 40 121 59 140 4.61e-18 82.0
MS.gene01502.t1 MTR_4g088065 43.802 121 52 3 54 174 134 238 2.17e-16 78.6
MS.gene01502.t1 MTR_8g107210 50.000 62 31 0 45 106 96 157 2.01e-15 77.4
MS.gene01502.t1 MTR_3g462480 42.708 96 46 1 297 392 4 90 4.17e-15 70.9
MS.gene01502.t1 MTR_1g115315 30.400 125 67 1 42 166 82 186 4.21e-15 75.1
MS.gene01502.t1 MTR_1g115315 43.939 66 37 0 42 107 82 147 5.15e-15 75.1
MS.gene01502.t1 MTR_5g081990 45.312 64 35 0 45 108 33 96 5.53e-15 73.2
MS.gene01502.t1 MTR_3g115620 37.363 91 56 1 14 104 52 141 5.75e-15 73.9
MS.gene01502.t1 MTR_7g060630 43.836 73 41 0 39 111 2 74 1.92e-14 72.0
MS.gene01502.t1 MTR_5g021930 42.667 75 42 1 39 112 24 98 3.35e-14 73.2
MS.gene01502.t1 MTR_1g019130 50.000 60 30 0 45 104 90 149 3.36e-14 72.0
MS.gene01502.t1 MTR_4g063735 50.000 60 30 0 45 104 25 84 5.83e-14 71.6
MS.gene01502.t1 MTR_1g019130 50.000 60 30 0 45 104 90 149 9.50e-14 70.9
MS.gene01502.t1 MTR_7g023810 42.424 66 38 0 39 104 62 127 2.02e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01502.t1 AT5G45980 35.980 403 159 11 1 392 11 325 2.59e-68 219
MS.gene01502.t1 AT2G33880 84.483 116 14 3 1 114 11 124 2.66e-60 200
MS.gene01502.t1 AT2G33880 84.483 116 14 3 1 114 11 124 3.71e-60 200
MS.gene01502.t1 AT3G03660 64.286 70 24 1 28 96 15 84 1.37e-23 99.4
MS.gene01502.t1 AT3G03660 52.632 57 27 0 336 392 208 264 5.57e-13 69.3
MS.gene01502.t1 AT3G03660 64.286 70 24 1 28 96 15 84 1.98e-23 99.8
MS.gene01502.t1 AT3G03660 52.632 57 27 0 336 392 237 293 8.54e-13 68.9
MS.gene01502.t1 AT3G03660 64.286 70 24 1 28 96 15 84 3.24e-23 99.0
MS.gene01502.t1 AT3G03660 53.571 56 26 0 337 392 209 264 1.66e-12 68.2
MS.gene01502.t1 AT3G03660 64.286 70 24 1 28 96 15 84 5.49e-23 99.0
MS.gene01502.t1 AT3G03660 53.571 56 26 0 337 392 238 293 2.40e-12 67.8
MS.gene01502.t1 AT5G17810 67.797 59 18 1 39 96 14 72 2.88e-21 93.2
MS.gene01502.t1 AT5G17810 50.877 57 28 0 336 392 207 263 1.94e-13 70.5
MS.gene01502.t1 AT5G17810 67.797 59 18 1 39 96 14 72 3.17e-21 92.8
MS.gene01502.t1 AT5G17810 50.877 57 28 0 336 392 208 264 1.96e-13 70.5
MS.gene01502.t1 AT5G17810 67.797 59 18 1 39 96 14 72 3.17e-21 92.8
MS.gene01502.t1 AT5G17810 50.877 57 28 0 336 392 208 264 1.96e-13 70.5
MS.gene01502.t1 AT5G05770 38.095 84 52 0 45 128 29 112 1.75e-16 75.9
MS.gene01502.t1 AT3G18010 48.387 62 32 0 45 106 76 137 4.77e-15 76.3
MS.gene01502.t1 AT2G28610 48.529 68 35 0 39 106 2 69 7.08e-15 74.3
MS.gene01502.t1 AT1G20700 46.774 62 33 0 43 104 31 92 9.29e-15 71.6
MS.gene01502.t1 AT3G11260 45.312 64 35 0 45 108 24 87 1.27e-14 72.0
MS.gene01502.t1 AT1G20700 46.774 62 33 0 43 104 93 154 1.96e-14 72.4
MS.gene01502.t1 AT1G20700 46.774 62 33 0 43 104 93 154 2.10e-14 72.0
MS.gene01502.t1 AT1G46480 50.000 60 30 0 45 104 90 149 3.32e-14 71.2
MS.gene01502.t1 AT4G35550 45.161 62 34 0 43 104 97 158 1.20e-13 71.2
MS.gene01502.t1 AT1G46480 50.000 60 30 0 45 104 90 149 1.75e-13 70.5
MS.gene01502.t1 AT2G01500 50.909 55 27 0 45 99 61 115 5.45e-13 69.3
MS.gene01502.t1 AT5G46010 47.619 63 32 1 41 102 50 112 1.09e-12 64.7
MS.gene01502.t1 AT5G59340 43.333 60 34 0 45 104 14 73 1.14e-12 68.2
MS.gene01502.t1 AT2G17950 46.032 63 33 1 45 106 38 100 2.16e-12 67.8

Find 97 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTGAGGAAGTGAATT+AGG 0.138466 2.2:+68109921 None:intergenic
TGCTTCTTGATTTGCGGTTT+TGG 0.159712 2.2:+68110018 None:intergenic
TCTGATTCTTGTTCTGGTTT+TGG 0.210105 2.2:+68109976 None:intergenic
GTGGCCTTTGAGGTTGCTTC+TGG 0.210381 2.2:-68108680 MS.gene01502:CDS
TCTGATTCTGATTCTTGTTC+TGG 0.215529 2.2:+68109970 None:intergenic
CTTGAAGCTATCTTCAATTC+TGG 0.223036 2.2:-68110134 MS.gene01502:CDS
TTTAATGTTCGTGCGGCATT+TGG 0.234206 2.2:-68108653 MS.gene01502:CDS
ATGCGGATTTGTTCTGGTTT+TGG 0.247339 2.2:+68110158 None:intergenic
TTGGCAGGTATTAATTCTTT+TGG 0.251759 2.2:+68109852 None:intergenic
TTAATGTTCGTGCGGCATTT+GGG 0.270781 2.2:-68108652 MS.gene01502:CDS
CCTTGTGATGTAACATTGTT+AGG 0.298506 2.2:+68109639 None:intergenic
TTTGGATTCCACCTTGGCTT+TGG 0.309423 2.2:+68110176 None:intergenic
CCATTGGTGATGAGTGTTGC+AGG 0.323664 2.2:+68110437 None:intergenic
TCAAGTATGCGGATTTGTTC+TGG 0.334510 2.2:+68110152 None:intergenic
AATGCCGCACGAACATTAAA+AGG 0.340006 2.2:+68108656 None:intergenic
GGCACAACATCATTGATGTT+AGG 0.346091 2.2:+68109810 None:intergenic
GCTGAAAATATGTTTGGTTT+TGG 0.348978 2.2:+68109763 None:intergenic
ATCTTCCTTATCTCTTCTCT+TGG 0.351542 2.2:+68110098 None:intergenic
CTGTTCTTGATCTTTCTTTG+AGG 0.356529 2.2:+68109491 None:intergenic
ACAGAAGCAGTTGGAGAATT+AGG 0.358074 2.2:+68109789 None:intergenic
TTTGAGGCTGAAAATATGTT+TGG 0.371353 2.2:+68109757 None:intergenic
TTCCACCTTGGCTTTGGCTC+AGG 0.373630 2.2:+68110182 None:intergenic
TTCCTTATCTCTTCTCTTGG+TGG 0.377528 2.2:+68110101 None:intergenic
AAATTTGAGGAAGTGAATTA+GGG 0.386654 2.2:+68109922 None:intergenic
CATCAATGATGTGGCCTTTG+AGG 0.391103 2.2:-68108690 MS.gene01502:CDS
CAAGAATCAGAATCAGAATC+AGG 0.414548 2.2:-68109964 MS.gene01502:CDS
CCTTGCACTTGAGAAATGAT+AGG 0.417012 2.2:+68109348 None:intergenic
GTAGGATGTAAAACAGTAGT+AGG 0.421080 2.2:+68109399 None:intergenic
TATGCTTGCTTCTTGATTTG+CGG 0.428894 2.2:+68110012 None:intergenic
GCACAACATCATTGATGTTA+GGG 0.443675 2.2:+68109811 None:intergenic
AGAGCACAGTTGCAAGAGTA+TGG 0.448490 2.2:-68110074 MS.gene01502:CDS
TAGTGCAGTTACCAGTGTTA+TGG 0.449318 2.2:+68109559 None:intergenic
TTACTTGTGGTGGTGGAAGA+AGG 0.462598 2.2:+68109724 None:intergenic
TTCTTCCCAGTGCAACATCA+TGG 0.463536 2.2:-68109678 MS.gene01502:CDS
CTCAAAGAAAGATCAAGAAC+AGG 0.467360 2.2:-68109490 MS.gene01502:CDS
AGATAATTACCTGAGGAGTA+AGG 0.470017 2.2:+68110366 None:intergenic
ATCTCAGGCATTGGTGAACC+AGG 0.475607 2.2:-68108737 MS.gene01502:intron
GCTGTTCTTGTACATCAAAC+TGG 0.484452 2.2:-68108623 MS.gene01502:CDS
GAAAATAACATGCACCATGC+TGG 0.488247 2.2:+68108555 None:intergenic
CCTAACAATGTTACATCACA+AGG 0.488908 2.2:-68109639 MS.gene01502:CDS
CCAAGGGAAAATACTTTGGC+AGG 0.496441 2.2:+68109837 None:intergenic
CCTTGTCCATGATGTTGCAC+TGG 0.500743 2.2:+68109672 None:intergenic
TGCTGACCATGTGGTTGAGC+AGG 0.506086 2.2:+68109585 None:intergenic
GAAACCAAGGGAAAATACTT+TGG 0.514758 2.2:+68109833 None:intergenic
GATAATTACCTGAGGAGTAA+GGG 0.515469 2.2:+68110367 None:intergenic
CACAGAACCCCTTACTCCTC+AGG 0.516334 2.2:-68110375 MS.gene01502:intron
AGTGAAGAGTGACACCATAC+TGG 0.516391 2.2:+68108582 None:intergenic
TGTTCATGATCTCACTAAGC+AGG 0.516785 2.2:+68109529 None:intergenic
GTGATGGTGGAGGAAGTAGT+AGG 0.517817 2.2:+68109381 None:intergenic
TAATGTTCGTGCGGCATTTG+GGG 0.529446 2.2:-68108651 MS.gene01502:CDS
AAGAAGAAAGTCTCAGTAGC+TGG 0.533457 2.2:+68109696 None:intergenic
GGTACAGTAGCAGAAATTTG+AGG 0.535619 2.2:+68109909 None:intergenic
GGTGCAGTTACTTGTGGTGG+TGG 0.536505 2.2:+68109717 None:intergenic
ATCCACCAAGAGAAGAGATA+AGG 0.537259 2.2:-68110103 MS.gene01502:CDS
TTGCAAGAGTATGGTCAAGT+TGG 0.545746 2.2:-68110065 MS.gene01502:CDS
TACTTGTGGTGGTGGAAGAA+GGG 0.555078 2.2:+68109725 None:intergenic
AGCTATCTTCAATTCTGGAA+TGG 0.556620 2.2:-68110129 MS.gene01502:CDS
GCAAACAGATGTTCAGATGT+GGG 0.556845 2.2:+68109436 None:intergenic
GAGGAAGATGAAGAAGATGA+AGG 0.560821 2.2:+68109888 None:intergenic
CCTGTGTTAACAAACCAGTA+TGG 0.574262 2.2:-68108596 MS.gene01502:CDS
AGGTGATTGAACAGTGATGG+TGG 0.575194 2.2:+68109368 None:intergenic
GGCAAACAGATGTTCAGATG+TGG 0.578783 2.2:+68109435 None:intergenic
AACAGTAGTAGGAGTTGTGG+CGG 0.580421 2.2:+68109410 None:intergenic
CTTGTCCATGATGTTGCACT+GGG 0.582831 2.2:+68109673 None:intergenic
CATTGATGTTAGGGAAACCA+AGG 0.582855 2.2:+68109820 None:intergenic
ACTCTTCACTCACTCCAGCA+TGG 0.587267 2.2:-68108569 MS.gene01502:CDS
CATTGGTGATGAGTGTTGCA+GGG 0.588949 2.2:+68110438 None:intergenic
GTAGCTGGTGCAGTTACTTG+TGG 0.590783 2.2:+68109711 None:intergenic
AGTTGATGTCATGCTGCCAT+TGG 0.593818 2.2:+68110421 None:intergenic
GAAGTCCTGAGCCAAAGCCA+AGG 0.598879 2.2:-68110187 MS.gene01502:CDS
AAACAGATGTTCAGATGTGG+GGG 0.599793 2.2:+68109438 None:intergenic
CCTATCATTTCTCAAGTGCA+AGG 0.604894 2.2:-68109348 MS.gene01502:intron
TGAAGATAGCTTCAAGTATG+CGG 0.609197 2.2:+68110141 None:intergenic
ATAATTACCTGAGGAGTAAG+GGG 0.610710 2.2:+68110368 None:intergenic
CAAACAGATGTTCAGATGTG+GGG 0.614296 2.2:+68109437 None:intergenic
TAAAACAGTAGTAGGAGTTG+TGG 0.614312 2.2:+68109407 None:intergenic
CCATACTGGTTTGTTAACAC+AGG 0.617631 2.2:+68108596 None:intergenic
GCTGGTGCAGTTACTTGTGG+TGG 0.617972 2.2:+68109714 None:intergenic
AGGTCCAGAAGCAACCTCAA+AGG 0.623758 2.2:+68108676 None:intergenic
GTAGTAGGAGTTGTGGCGGG+TGG 0.627094 2.2:+68109414 None:intergenic
ATGGTTCCTGCTCAACCACA+TGG 0.630924 2.2:-68109591 MS.gene01502:CDS
CCAGTGCAACATCATGGACA+AGG 0.635853 2.2:-68109672 MS.gene01502:CDS
GATAGGTGATTGAACAGTGA+TGG 0.637240 2.2:+68109365 None:intergenic
ACAGTAGTAGGAGTTGTGGC+GGG 0.646909 2.2:+68109411 None:intergenic
GTCCTGAGCCAAAGCCAAGG+TGG 0.648407 2.2:-68110184 MS.gene01502:CDS
CCTGCAACACTCATCACCAA+TGG 0.655110 2.2:-68110437 MS.gene01502:CDS
ATTGATGTTAGGGAAACCAA+GGG 0.665295 2.2:+68109821 None:intergenic
CTAACAATGTTACATCACAA+GGG 0.668058 2.2:-68109638 MS.gene01502:CDS
GGTCAGCAACACCATAACAC+TGG 0.670176 2.2:-68109570 MS.gene01502:CDS
TTATGGTGTTGCTGACCATG+TGG 0.673188 2.2:+68109576 None:intergenic
AGTGAGATCATGAACAACCA+TGG 0.690840 2.2:-68109522 MS.gene01502:CDS
AGTGGTGTTCATCAATGATG+TGG 0.696660 2.2:-68108699 MS.gene01502:CDS
TGGTTGAGCAGGAACCATGT+TGG 0.698137 2.2:+68109596 None:intergenic
TCTTTGAGGAATTAACACCA+TGG 0.698293 2.2:+68109505 None:intergenic
TGATTGAACAGTGATGGTGG+AGG 0.713068 2.2:+68109371 None:intergenic
AACAGATGTTCAGATGTGGG+GGG 0.713218 2.2:+68109439 None:intergenic
AGGTGTTGCTGCAAAATCAG+TGG 0.717993 2.2:-68108717 MS.gene01502:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAAACTAAATAATTT+GGG + chr2.2:68109652-68109671 None:intergenic 10.0%
!! AAGTATATAGATGAAATAAT+AGG + chr2.2:68109876-68109895 None:intergenic 15.0%
!! GTTAAAGAAACTAAATAATT+TGG + chr2.2:68109653-68109672 None:intergenic 15.0%
!! TAAAGAAACTAAATAATTTG+GGG + chr2.2:68109651-68109670 None:intergenic 15.0%
!! TATGAAAAATAAATTAGAGA+AGG + chr2.2:68110413-68110432 None:intergenic 15.0%
!! AATTTAGAGATGAAAATATG+TGG + chr2.2:68109685-68109704 None:intergenic 20.0%
!! TTGTTACAAATTAGACATTA+GGG + chr2.2:68108622-68108641 None:intergenic 20.0%
!!! ATTTTTTTTCTTCTTCTTTG+TGG - chr2.2:68108654-68108673 MS.gene01502:CDS 20.0%
!!! CATAGTTTTTGAGATAAAAA+TGG - chr2.2:68109928-68109947 MS.gene01502:CDS 20.0%
!!! TAAAAATGGTAATGTATGTA+TGG - chr2.2:68109942-68109961 MS.gene01502:CDS 20.0%
!!! TTTAGTATTAGTTTGACTTT+TGG - chr2.2:68110069-68110088 MS.gene01502:CDS 20.0%
! AAAATGTAGATAATTACCTG+AGG + chr2.2:68108526-68108545 None:intergenic 25.0%
! AAATTTGAGGAAGTGAATTA+GGG + chr2.2:68108963-68108982 None:intergenic 25.0%
! ATCTCAAAAACTATGTTCTT+AGG + chr2.2:68109923-68109942 None:intergenic 25.0%
! CTTGTTACAAATTAGACATT+AGG + chr2.2:68108623-68108642 None:intergenic 25.0%
!!! ATATTTTGTTTTGCAGATGT+AGG - chr2.2:68110432-68110451 MS.gene01502:CDS 25.0%
!!! TATTTTGTTTTGCAGATGTA+GGG - chr2.2:68110433-68110452 MS.gene01502:CDS 25.0%
ACTATGTTCTTAGGTTCTAT+AGG + chr2.2:68109914-68109933 None:intergenic 30.0%
AGATTAATGTGAATAAGACG+TGG - chr2.2:68109988-68110007 MS.gene01502:CDS 30.0%
ATAAACTAGTCAAGATCTTG+TGG + chr2.2:68109828-68109847 None:intergenic 30.0%
CTAACAATGTTACATCACAA+GGG - chr2.2:68109244-68109263 MS.gene01502:intron 30.0%
GAAATTTGAGGAAGTGAATT+AGG + chr2.2:68108964-68108983 None:intergenic 30.0%
TATGGAAAAGAAGAGAAAGT+GGG - chr2.2:68109960-68109979 MS.gene01502:CDS 30.0%
TTCTTCTTCTTTGTGGAAAT+AGG - chr2.2:68108661-68108680 MS.gene01502:CDS 30.0%
! GTGATGCTAATGTTTTCTAT+TGG - chr2.2:68108839-68108858 MS.gene01502:intron 30.0%
! TTGGCAGGTATTAATTCTTT+TGG + chr2.2:68109033-68109052 None:intergenic 30.0%
! TTTGAGGCTGAAAATATGTT+TGG + chr2.2:68109128-68109147 None:intergenic 30.0%
!! ACTTTTGGTAGCTATAGTTA+AGG - chr2.2:68110084-68110103 MS.gene01502:CDS 30.0%
!! GCTGAAAATATGTTTGGTTT+TGG + chr2.2:68109122-68109141 None:intergenic 30.0%
!!! ATTTTGTTTTGCAGATGTAG+GGG - chr2.2:68110434-68110453 MS.gene01502:CDS 30.0%
AGATAATTACCTGAGGAGTA+AGG + chr2.2:68108519-68108538 None:intergenic 35.0%
ATAATTACCTGAGGAGTAAG+GGG + chr2.2:68108517-68108536 None:intergenic 35.0%
ATCTTCCTTATCTCTTCTCT+TGG + chr2.2:68108787-68108806 None:intergenic 35.0%
ATGTTCTTAGGTTCTATAGG+CGG + chr2.2:68109911-68109930 None:intergenic 35.0%
ATTGATGTTAGGGAAACCAA+GGG + chr2.2:68109064-68109083 None:intergenic 35.0%
CAAGAATCAGAATCAGAATC+AGG - chr2.2:68108918-68108937 MS.gene01502:intron 35.0%
CCTAACAATGTTACATCACA+AGG - chr2.2:68109243-68109262 MS.gene01502:intron 35.0%
CCTTGTGATGTAACATTGTT+AGG + chr2.2:68109246-68109265 None:intergenic 35.0%
CTCAAAGAAAGATCAAGAAC+AGG - chr2.2:68109392-68109411 MS.gene01502:CDS 35.0%
CTGTTCTTGATCTTTCTTTG+AGG + chr2.2:68109394-68109413 None:intergenic 35.0%
CTTGAAGCTATCTTCAATTC+TGG - chr2.2:68108748-68108767 MS.gene01502:intron 35.0%
GAAACCAAGGGAAAATACTT+TGG + chr2.2:68109052-68109071 None:intergenic 35.0%
GAAATGATTGAGTGTATCTC+AGG - chr2.2:68110130-68110149 MS.gene01502:CDS 35.0%
GATAATTACCTGAGGAGTAA+GGG + chr2.2:68108518-68108537 None:intergenic 35.0%
GCACAACATCATTGATGTTA+GGG + chr2.2:68109074-68109093 None:intergenic 35.0%
GTAGGATGTAAAACAGTAGT+AGG + chr2.2:68109486-68109505 None:intergenic 35.0%
GTATGGAAAAGAAGAGAAAG+TGG - chr2.2:68109959-68109978 MS.gene01502:CDS 35.0%
TAAAACAGTAGTAGGAGTTG+TGG + chr2.2:68109478-68109497 None:intergenic 35.0%
TCTGATTCTGATTCTTGTTC+TGG + chr2.2:68108915-68108934 None:intergenic 35.0%
TGAAGATAGCTTCAAGTATG+CGG + chr2.2:68108744-68108763 None:intergenic 35.0%
! AGAAGGGTAGTTACATTTTG+AGG + chr2.2:68109144-68109163 None:intergenic 35.0%
! AGCTATCTTCAATTCTGGAA+TGG - chr2.2:68108753-68108772 MS.gene01502:intron 35.0%
! CTTTTCTGAACTTTCCAACA+TGG - chr2.2:68109272-68109291 MS.gene01502:intron 35.0%
! GCAGGTATTAATTCTTTTGG+TGG + chr2.2:68109030-68109049 None:intergenic 35.0%
! GTTAGTGTACCATGGTTTTT+GGG - chr2.2:68110010-68110029 MS.gene01502:CDS 35.0%
! TATGCTTGCTTCTTGATTTG+CGG + chr2.2:68108873-68108892 None:intergenic 35.0%
! TCTTTGAGGAATTAACACCA+TGG + chr2.2:68109380-68109399 None:intergenic 35.0%
!! GGCTCTATTGGCTTAAATAT+AGG - chr2.2:68110045-68110064 MS.gene01502:CDS 35.0%
!!! AGTGAATTAGGGTTTTGTTG+TGG + chr2.2:68108952-68108971 None:intergenic 35.0%
!!! TCTGATTCTTGTTCTGGTTT+TGG + chr2.2:68108909-68108928 None:intergenic 35.0%
AAACAGATGTTCAGATGTGG+GGG + chr2.2:68109447-68109466 None:intergenic 40.0%
AAGAAGAAAGTCTCAGTAGC+TGG + chr2.2:68109189-68109208 None:intergenic 40.0%
AATGCCGCACGAACATTAAA+AGG + chr2.2:68110229-68110248 None:intergenic 40.0%
ACAGAAGCAGTTGGAGAATT+AGG + chr2.2:68109096-68109115 None:intergenic 40.0%
AGATGTAGGGGAAAAAATGC+TGG - chr2.2:68110446-68110465 MS.gene01502:CDS 40.0%
AGTGAGATCATGAACAACCA+TGG - chr2.2:68109360-68109379 MS.gene01502:CDS 40.0%
AGTGGTGTTCATCAATGATG+TGG - chr2.2:68110183-68110202 MS.gene01502:CDS 40.0%
ATCCACCAAGAGAAGAGATA+AGG - chr2.2:68108779-68108798 MS.gene01502:intron 40.0%
ATTGAGTGTATCTCAGGCAT+TGG - chr2.2:68110136-68110155 MS.gene01502:CDS 40.0%
CAAACAGATGTTCAGATGTG+GGG + chr2.2:68109448-68109467 None:intergenic 40.0%
CATTGATGTTAGGGAAACCA+AGG + chr2.2:68109065-68109084 None:intergenic 40.0%
CCTATCATTTCTCAAGTGCA+AGG - chr2.2:68109534-68109553 MS.gene01502:CDS 40.0%
CCTGTGTTAACAAACCAGTA+TGG - chr2.2:68110286-68110305 MS.gene01502:intron 40.0%
CCTTGCACTTGAGAAATGAT+AGG + chr2.2:68109537-68109556 None:intergenic 40.0%
GAAAATAACATGCACCATGC+TGG + chr2.2:68110330-68110349 None:intergenic 40.0%
GAGGAAGATGAAGAAGATGA+AGG + chr2.2:68108997-68109016 None:intergenic 40.0%
GATAGGTGATTGAACAGTGA+TGG + chr2.2:68109520-68109539 None:intergenic 40.0%
GCAAACAGATGTTCAGATGT+GGG + chr2.2:68109449-68109468 None:intergenic 40.0%
GCTGTTCTTGTACATCAAAC+TGG - chr2.2:68110259-68110278 MS.gene01502:intron 40.0%
GGCACAACATCATTGATGTT+AGG + chr2.2:68109075-68109094 None:intergenic 40.0%
GGTACAGTAGCAGAAATTTG+AGG + chr2.2:68108976-68108995 None:intergenic 40.0%
TAGTGCAGTTACCAGTGTTA+TGG + chr2.2:68109326-68109345 None:intergenic 40.0%
TGTTCATGATCTCACTAAGC+AGG + chr2.2:68109356-68109375 None:intergenic 40.0%
TTAATGTTCGTGCGGCATTT+GGG - chr2.2:68110230-68110249 MS.gene01502:intron 40.0%
TTCCTTATCTCTTCTCTTGG+TGG + chr2.2:68108784-68108803 None:intergenic 40.0%
TTTAATGTTCGTGCGGCATT+TGG - chr2.2:68110229-68110248 MS.gene01502:intron 40.0%
! GGTTAGTGTACCATGGTTTT+TGG - chr2.2:68110009-68110028 MS.gene01502:CDS 40.0%
! TCAAGTATGCGGATTTGTTC+TGG + chr2.2:68108733-68108752 None:intergenic 40.0%
! TGGACCTTTTAATGTTCGTG+CGG - chr2.2:68110222-68110241 MS.gene01502:intron 40.0%
! TTGCAAGAGTATGGTCAAGT+TGG - chr2.2:68108817-68108836 MS.gene01502:intron 40.0%
! TTTTGGTGGAGATTTCTCAG+AGG + chr2.2:68109016-68109035 None:intergenic 40.0%
!! CCATACTGGTTTGTTAACAC+AGG + chr2.2:68110289-68110308 None:intergenic 40.0%
!!! ATGCGGATTTGTTCTGGTTT+TGG + chr2.2:68108727-68108746 None:intergenic 40.0%
!!! TCTTGTTCTGGTTTTGGAGA+TGG + chr2.2:68108903-68108922 None:intergenic 40.0%
!!! TGCTTCTTGATTTGCGGTTT+TGG + chr2.2:68108867-68108886 None:intergenic 40.0%
!!! TTTTGGTTCACAGAAGCAGT+TGG + chr2.2:68109105-68109124 None:intergenic 40.0%
AACAGATGTTCAGATGTGGG+GGG + chr2.2:68109446-68109465 None:intergenic 45.0%
AACAGTAGTAGGAGTTGTGG+CGG + chr2.2:68109475-68109494 None:intergenic 45.0%
AAGACGTGGTTAGTGTACCA+TGG - chr2.2:68110002-68110021 MS.gene01502:CDS 45.0%
AGAGCACAGTTGCAAGAGTA+TGG - chr2.2:68108808-68108827 MS.gene01502:intron 45.0%
AGGTGATTGAACAGTGATGG+TGG + chr2.2:68109517-68109536 None:intergenic 45.0%
AGTGAAGAGTGACACCATAC+TGG + chr2.2:68110303-68110322 None:intergenic 45.0%
CATCAATGATGTGGCCTTTG+AGG - chr2.2:68110192-68110211 MS.gene01502:CDS 45.0%
CCAAGGGAAAATACTTTGGC+AGG + chr2.2:68109048-68109067 None:intergenic 45.0%
CTTGTCCATGATGTTGCACT+GGG + chr2.2:68109212-68109231 None:intergenic 45.0%
GGCAAACAGATGTTCAGATG+TGG + chr2.2:68109450-68109469 None:intergenic 45.0%
TAATGTTCGTGCGGCATTTG+GGG - chr2.2:68110231-68110250 MS.gene01502:intron 45.0%
TTCTTCCCAGTGCAACATCA+TGG - chr2.2:68109204-68109223 MS.gene01502:intron 45.0%
TTTGGATTCCACCTTGGCTT+TGG + chr2.2:68108709-68108728 None:intergenic 45.0%
! AGTTGATGTCATGCTGCCAT+TGG + chr2.2:68108464-68108483 None:intergenic 45.0%
!! ACTGATTTTGCAGCAACACC+TGG + chr2.2:68110166-68110185 None:intergenic 45.0%
!! AGGTGTTGCTGCAAAATCAG+TGG - chr2.2:68110165-68110184 MS.gene01502:CDS 45.0%
!! CATTGGTGATGAGTGTTGCA+GGG + chr2.2:68108447-68108466 None:intergenic 45.0%
!! CCTGCCAAAGTATTTTCCCT+TGG - chr2.2:68109045-68109064 MS.gene01502:intron 45.0%
!! TACTTGTGGTGGTGGAAGAA+GGG + chr2.2:68109160-68109179 None:intergenic 45.0%
!! TGATTGAACAGTGATGGTGG+AGG + chr2.2:68109514-68109533 None:intergenic 45.0%
!! TTACTTGTGGTGGTGGAAGA+AGG + chr2.2:68109161-68109180 None:intergenic 45.0%
!! TTATGGTGTTGCTGACCATG+TGG + chr2.2:68109309-68109328 None:intergenic 45.0%
!!! TCTGGTTTTGGATTCCACCT+TGG + chr2.2:68108715-68108734 None:intergenic 45.0%
!!! TATTTTTTTATTTTTCTTTT+AGG - chr2.2:68109845-68109864 MS.gene01502:CDS 5.0%
ACAGTAGTAGGAGTTGTGGC+GGG + chr2.2:68109474-68109493 None:intergenic 50.0%
ACTCTTCACTCACTCCAGCA+TGG - chr2.2:68110313-68110332 MS.gene01502:intron 50.0%
AGGTCCAGAAGCAACCTCAA+AGG + chr2.2:68110209-68110228 None:intergenic 50.0%
ATGGTTCCTGCTCAACCACA+TGG - chr2.2:68109291-68109310 MS.gene01502:intron 50.0%
CACACGTGACCCAAAAACCA+TGG + chr2.2:68110022-68110041 None:intergenic 50.0%
CCAGTGCAACATCATGGACA+AGG - chr2.2:68109210-68109229 MS.gene01502:intron 50.0%
CCTGCAACACTCATCACCAA+TGG - chr2.2:68108445-68108464 MS.gene01502:intron 50.0%
CCTTGTCCATGATGTTGCAC+TGG + chr2.2:68109213-68109232 None:intergenic 50.0%
GGTCAGCAACACCATAACAC+TGG - chr2.2:68109312-68109331 MS.gene01502:intron 50.0%
GTAGCTGGTGCAGTTACTTG+TGG + chr2.2:68109174-68109193 None:intergenic 50.0%
TGGTTGAGCAGGAACCATGT+TGG + chr2.2:68109289-68109308 None:intergenic 50.0%
TGTTCAGATGTGGGGGGATT+TGG + chr2.2:68109440-68109459 None:intergenic 50.0%
! TCACGTGTGCATGGCTCTAT+TGG - chr2.2:68110033-68110052 MS.gene01502:CDS 50.0%
!! ATCTCAGGCATTGGTGAACC+AGG - chr2.2:68110145-68110164 MS.gene01502:CDS 50.0%
!! CCATTGGTGATGAGTGTTGC+AGG + chr2.2:68108448-68108467 None:intergenic 50.0%
!! GTGATGGTGGAGGAAGTAGT+AGG + chr2.2:68109504-68109523 None:intergenic 50.0%
!!! GTTTTTGGGTCACGTGTGCA+TGG - chr2.2:68110024-68110043 MS.gene01502:CDS 50.0%
CACAGAACCCCTTACTCCTC+AGG - chr2.2:68108507-68108526 MS.gene01502:intron 55.0%
GAAGTCCTGAGCCAAAGCCA+AGG - chr2.2:68108695-68108714 MS.gene01502:CDS 55.0%
GCTGGTGCAGTTACTTGTGG+TGG + chr2.2:68109171-68109190 None:intergenic 55.0%
GGTGCAGTTACTTGTGGTGG+TGG + chr2.2:68109168-68109187 None:intergenic 55.0%
TGCTGACCATGTGGTTGAGC+AGG + chr2.2:68109300-68109319 None:intergenic 55.0%
!! GTGGCCTTTGAGGTTGCTTC+TGG - chr2.2:68110202-68110221 MS.gene01502:CDS 55.0%
!! TTCCACCTTGGCTTTGGCTC+AGG + chr2.2:68108703-68108722 None:intergenic 55.0%
GTCCTGAGCCAAAGCCAAGG+TGG - chr2.2:68108698-68108717 MS.gene01502:CDS 60.0%
! GTAGTAGGAGTTGTGGCGGG+TGG + chr2.2:68109471-68109490 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 68108429 68110475 68108429 ID=MS.gene01502
chr2.2 mRNA 68108429 68110475 68108429 ID=MS.gene01502.t1;Parent=MS.gene01502
chr2.2 exon 68110376 68110475 68110376 ID=MS.gene01502.t1.exon1;Parent=MS.gene01502.t1
chr2.2 CDS 68110376 68110475 68110376 ID=cds.MS.gene01502.t1;Parent=MS.gene01502.t1
chr2.2 exon 68109349 68110221 68109349 ID=MS.gene01502.t1.exon2;Parent=MS.gene01502.t1
chr2.2 CDS 68109349 68110221 68109349 ID=cds.MS.gene01502.t1;Parent=MS.gene01502.t1
chr2.2 exon 68108545 68108752 68108545 ID=MS.gene01502.t1.exon3;Parent=MS.gene01502.t1
chr2.2 CDS 68108545 68108752 68108545 ID=cds.MS.gene01502.t1;Parent=MS.gene01502.t1
chr2.2 exon 68108429 68108456 68108429 ID=MS.gene01502.t1.exon4;Parent=MS.gene01502.t1
chr2.2 CDS 68108429 68108456 68108429 ID=cds.MS.gene01502.t1;Parent=MS.gene01502.t1
Gene Sequence

>MS.gene01502

ATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACTCTTCTCTCATCTCATCTGCTTGTCACAGAACCCCTTACTCCTCAGGTAATTATCTACATTTTCAATCTAACTATACTAATATTTGACTATAGAAAAACACTGATTCAACTTTTGTACGTAAAATATAGTTAGAGACCCTAATGTCTAATTTGTAACAAGTTATTATAGACATTTTTTTTCTTCTTCTTTGTGGAAATAGGTTGTGAAGAGAGAAGTCCTGAGCCAAAGCCAAGGTGGAATCCAAAACCAGAACAAATCCGCATACTTGAAGCTATCTTCAATTCTGGAATGGTGAATCCACCAAGAGAAGAGATAAGGAAGATTAGAGCACAGTTGCAAGAGTATGGTCAAGTTGGTGATGCTAATGTTTTCTATTGGTTCCAAAACCGCAAATCAAGAAGCAAGCATAAGCTTCGCCATCTCCAAAACCAGAACAAGAATCAGAATCAGAATCAGGATCAATCACCACAACAAAACCCTAATTCACTTCCTCAAATTTCTGCTACTGTACCTTCATCTTCTTCATCTTCCTCTGAGAAATCTCCACCAAAAGAATTAATACCTGCCAAAGTATTTTCCCTTGGTTTCCCTAACATCAATGATGTTGTGCCTAATTCTCCAACTGCTTCTGTGAACCAAAACCAAACATATTTTCAGCCTCAAAATGTAACTACCCTTCTTCCACCACCACAAGTAACTGCACCAGCTACTGAGACTTTCTTCTTCCCAGTGCAACATCATGGACAAGGAATAGTACTTCCTAACAATGTTACATCACAAGGGTTTTGCTTTTCTGAACTTTCCAACATGGTTCCTGCTCAACCACATGGTCAGCAACACCATAACACTGGTAACTGCACTACTAGTTTCCTGCTTAGTGAGATCATGAACAACCATGGTGTTAATTCCTCAAAGAAAGATCAAGAACAGGATAAGTCTGTGAAAATAATGCACCAAATCCCCCCACATCTGAACATCTGTTTGCCACCCGCCACAACTCCTACTACTGTTTTACATCCTACTACTTCCTCCACCATCACTGTTCAATCACCTATCATTTCTCAAGTGCAAGGTAATTAATTACATATATAGCATTTATTTACTTATGCAGTTACAGAAAAAGTTGAAATAATGATATATAGACAAAAATAAAATAAAATTTGACCCCAAATTATTTAGTTTCTTTAACACTACAATTCCACATATTTTCATCTCTAAATTTTTGTTGCTATTTTAACATGTATAGTATTCAAAACTTCTATTCTGCATAGTAATTTTTATTGTTTATATATTTTAAGAAAAGTTTTTATATTAACACATCTTGTAAGTGCAAGAGCAAAACCACAAGATCTTGACTAGTTTATTTTTTTATTTTTCTTTTAGGTTACTCCTATTATTTCATCTATATACTTGTTAATTTTACACCGCCTATAGAACCTAAGAACATAGTTTTTGAGATAAAAATGGTAATGTATGTATGGAAAAGAAGAGAAAGTGGGTAATAAGATTAATGTGAATAAGACGTGGTTAGTGTACCATGGTTTTTGGGTCACGTGTGCATGGCTCTATTGGCTTAAATATAGGCTTTAGTATTAGTTTGACTTTTGGTAGCTATAGTTAAGGTTTGTATTTAGACTTGCACATGAGAAATGATTGAGTGTATCTCAGGCATTGGTGAACCAGGTGTTGCTGCAAAATCAGTGGTGTTCATCAATGATGTGGCCTTTGAGGTTGCTTCTGGACCTTTTAATGTTCGTGCGGCATTTGGGGATGATGCTGTTCTTGTACATCAAACTGGTCAGCCTGTGTTAACAAACCAGTATGGTGTCACTCTTCACTCACTCCAGCATGGTGCATGTTATTTTCTTGTAAGCACGTAAACATACATTATTTTATATACTTGTTTAGTTAATCTTATCAAATTAACCTTCTCTAATTTATTTTTCATATATTTTGTTTTGCAGATGTAGGGGAAAAAATGCTGGAGAGTGA
Protein sequence

>MS.gene01502.t1

MFKSKPCNTHHQWQHDINSSLISSACHRTPYSSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNKNQNQNQDQSPQQNPNSLPQISATVPSSSSSSSEKSPPKELIPAKVFSLGFPNINDVVPNSPTASVNQNQTYFQPQNVTTLLPPPQVTAPATETFFFPVQHHGQGIVLPNNVTSQGFCFSELSNMVPAQPHGQQHHNTGNCTTSFLLSEIMNNHGVNSSKKDQEQDKSVKIMHQIPPHLNICLPPATTPTTVLHPTTSSTITVQSPIISQVQGIGEPGVAAKSVVFINDVAFEVASGPFNVRAAFGDDAVLVHQTGQPVLTNQYGVTLHSLQHGACYFLVSTCRGKNAGE