Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015041.t1 | XP_003603107.1 | 95 | 280 | 10 | 2 | 1 | 278 | 1 | 278 | 7.70E-156 | 559.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015041.t1 | O82307 | 47.5 | 257 | 102 | 6 | 28 | 258 | 64 | 313 | 2.6e-59 | 230.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015041.t1 | G7J714 | 95.0 | 280 | 10 | 2 | 1 | 278 | 1 | 278 | 5.5e-156 | 559.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015041.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015041.t1 | MTR_3g103960 | 95.000 | 280 | 10 | 2 | 1 | 278 | 1 | 278 | 0.0 | 543 |
| MS.gene015041.t1 | MTR_8g102100 | 44.512 | 328 | 106 | 10 | 24 | 278 | 52 | 376 | 3.53e-75 | 234 |
| MS.gene015041.t1 | MTR_6g090380 | 45.246 | 305 | 113 | 9 | 23 | 277 | 76 | 376 | 7.81e-75 | 233 |
| MS.gene015041.t1 | MTR_4g078660 | 67.890 | 109 | 34 | 1 | 49 | 157 | 56 | 163 | 4.01e-53 | 175 |
| MS.gene015041.t1 | MTR_2g090605 | 65.517 | 116 | 39 | 1 | 53 | 168 | 77 | 191 | 4.21e-53 | 178 |
| MS.gene015041.t1 | MTR_5g071070 | 57.664 | 137 | 53 | 3 | 43 | 175 | 138 | 273 | 7.70e-53 | 182 |
| MS.gene015041.t1 | MTR_5g071070 | 57.664 | 137 | 53 | 3 | 43 | 175 | 220 | 355 | 3.04e-52 | 181 |
| MS.gene015041.t1 | MTR_7g092070 | 66.667 | 114 | 37 | 1 | 43 | 156 | 254 | 366 | 5.66e-52 | 181 |
| MS.gene015041.t1 | MTR_3g029590 | 48.333 | 180 | 76 | 5 | 43 | 221 | 254 | 417 | 4.86e-49 | 172 |
| MS.gene015041.t1 | MTR_3g070880 | 50.000 | 170 | 81 | 3 | 16 | 183 | 126 | 293 | 7.05e-49 | 169 |
| MS.gene015041.t1 | MTR_5g082830 | 64.035 | 114 | 40 | 1 | 43 | 156 | 207 | 319 | 5.70e-48 | 169 |
| MS.gene015041.t1 | MTR_1g075890 | 62.281 | 114 | 42 | 1 | 43 | 156 | 219 | 331 | 5.70e-47 | 166 |
| MS.gene015041.t1 | MTR_3g435680 | 49.682 | 157 | 66 | 4 | 32 | 177 | 123 | 277 | 1.82e-46 | 160 |
| MS.gene015041.t1 | MTR_1g050438 | 60.550 | 109 | 42 | 1 | 48 | 156 | 223 | 330 | 3.01e-45 | 160 |
| MS.gene015041.t1 | MTR_0728s0020 | 60.550 | 109 | 42 | 1 | 48 | 156 | 239 | 346 | 5.10e-45 | 160 |
| MS.gene015041.t1 | MTR_3g435590 | 37.097 | 248 | 138 | 6 | 43 | 278 | 228 | 469 | 1.16e-44 | 157 |
| MS.gene015041.t1 | MTR_3g464270 | 43.671 | 158 | 83 | 2 | 52 | 209 | 8 | 159 | 2.56e-39 | 140 |
| MS.gene015041.t1 | MTR_3g464260 | 44.000 | 150 | 46 | 4 | 39 | 179 | 183 | 303 | 1.07e-29 | 117 |
| MS.gene015041.t1 | MTR_3g464290 | 56.977 | 86 | 35 | 2 | 43 | 127 | 90 | 174 | 2.19e-27 | 110 |
| MS.gene015041.t1 | MTR_3g464280 | 31.771 | 192 | 68 | 5 | 39 | 204 | 165 | 319 | 6.00e-21 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015041.t1 | AT4G29190 | 44.792 | 288 | 105 | 9 | 43 | 277 | 69 | 355 | 1.63e-68 | 216 |
| MS.gene015041.t1 | AT2G19810 | 41.159 | 328 | 130 | 10 | 10 | 277 | 34 | 358 | 5.95e-68 | 215 |
| MS.gene015041.t1 | AT2G25900 | 48.511 | 235 | 89 | 5 | 49 | 258 | 86 | 313 | 9.98e-66 | 208 |
| MS.gene015041.t1 | AT2G25900 | 48.511 | 235 | 89 | 5 | 49 | 258 | 86 | 313 | 9.98e-66 | 208 |
| MS.gene015041.t1 | AT1G03790 | 53.374 | 163 | 73 | 1 | 12 | 174 | 44 | 203 | 1.01e-56 | 187 |
| MS.gene015041.t1 | AT5G44260 | 63.636 | 121 | 41 | 1 | 37 | 157 | 47 | 164 | 1.12e-53 | 179 |
| MS.gene015041.t1 | AT2G40140 | 44.053 | 227 | 96 | 4 | 43 | 258 | 204 | 410 | 1.98e-52 | 180 |
| MS.gene015041.t1 | AT2G40140 | 44.053 | 227 | 96 | 4 | 43 | 258 | 204 | 410 | 1.98e-52 | 180 |
| MS.gene015041.t1 | AT2G41900 | 64.912 | 114 | 39 | 1 | 43 | 156 | 251 | 363 | 2.39e-51 | 179 |
| MS.gene015041.t1 | AT5G58620 | 63.158 | 114 | 41 | 1 | 43 | 156 | 199 | 311 | 3.47e-50 | 174 |
| MS.gene015041.t1 | AT5G12850 | 62.281 | 114 | 42 | 1 | 43 | 156 | 247 | 359 | 6.38e-50 | 175 |
| MS.gene015041.t1 | AT5G07500 | 61.261 | 111 | 42 | 1 | 48 | 158 | 47 | 156 | 7.37e-48 | 160 |
| MS.gene015041.t1 | AT3G55980 | 55.072 | 138 | 59 | 2 | 43 | 180 | 201 | 335 | 8.53e-48 | 167 |
| MS.gene015041.t1 | AT3G55980 | 55.072 | 138 | 59 | 2 | 43 | 180 | 268 | 402 | 2.68e-47 | 167 |
Find 81 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTGTTGTGTTCCATTC+AGG | 0.185975 | 3.2:-86034392 | None:intergenic |
| GCCAAAATCTATGCAAAATT+TGG | 0.227605 | 3.2:+86035103 | MS.gene015041:CDS |
| TTGGCTTCATGAGGAGTGTT+AGG | 0.270195 | 3.2:+86034951 | MS.gene015041:CDS |
| TGCCCGGAGTTTCGCAAATT+AGG | 0.270671 | 3.2:+86034659 | MS.gene015041:CDS |
| TCCGCAACCCATCCAATATC+AGG | 0.272913 | 3.2:-86035166 | None:intergenic |
| TCTCAGATGGGTTCTGTGTT+TGG | 0.301160 | 3.2:+86034995 | MS.gene015041:CDS |
| TCGGTCCCTGTCCCTGATAT+TGG | 0.350163 | 3.2:+86035154 | MS.gene015041:CDS |
| GTAACGACGGAACCCTTTGC+CGG | 0.351954 | 3.2:+86034768 | MS.gene015041:CDS |
| AAACTATGAAGGGGTTTCTA+TGG | 0.361016 | 3.2:+86035051 | MS.gene015041:CDS |
| TGAATTCGAACATTCGGAAT+TGG | 0.372764 | 3.2:-86034520 | None:intergenic |
| CTCAAACGATGGTGTTGTTT+CGG | 0.374036 | 3.2:+86035135 | MS.gene015041:CDS |
| GGAGATGAAACAAATGATTC+TGG | 0.374623 | 3.2:-86034857 | None:intergenic |
| AAACTCCGGGCAAGGATTGC+CGG | 0.383876 | 3.2:-86034648 | None:intergenic |
| TGGCTTCATGAGGAGTGTTA+GGG | 0.417289 | 3.2:+86034952 | MS.gene015041:CDS |
| GAAACCCCTTCATAGTTTGA+TGG | 0.429345 | 3.2:-86035046 | None:intergenic |
| ATTGTGTTGTGTTCCATTCA+GGG | 0.430094 | 3.2:-86034391 | None:intergenic |
| CTATGTCATTTGAAATGAAA+TGG | 0.449117 | 3.2:-86034436 | None:intergenic |
| TCTGTGTTTGGTTCTCCACC+AGG | 0.450591 | 3.2:+86035007 | MS.gene015041:CDS |
| GAACTTTGAATTCGAACATT+CGG | 0.452223 | 3.2:-86034526 | None:intergenic |
| TCCCTGTCCCTGATATTGGA+TGG | 0.452555 | 3.2:+86035158 | MS.gene015041:CDS |
| TCTATGGAGAGGGTGGAATC+AGG | 0.458742 | 3.2:+86035067 | MS.gene015041:CDS |
| AGCAAACTCGTCGCCGGCAA+AGG | 0.462993 | 3.2:-86034781 | None:intergenic |
| AGTCTTCCATCAAACTATGA+AGG | 0.470405 | 3.2:+86035040 | MS.gene015041:CDS |
| GATTCTTGCCACTTTGCTCA+TGG | 0.472931 | 3.2:+86034698 | MS.gene015041:CDS |
| TGTCCTAATTTGCGAAACTC+CGG | 0.493268 | 3.2:-86034662 | None:intergenic |
| ACCTCGATACGGTGTCCCTC+CGG | 0.499369 | 3.2:+86034910 | MS.gene015041:CDS |
| GGAGAATCAAGAACTGAAGT+AGG | 0.502308 | 3.2:-86034878 | None:intergenic |
| CCCTGTCCCTGATATTGGAT+GGG | 0.503425 | 3.2:+86035159 | MS.gene015041:CDS |
| GTCATTTGAAATGAAATGGT+TGG | 0.505715 | 3.2:-86034432 | None:intergenic |
| GCAAACTCGTCGCCGGCAAA+GGG | 0.507995 | 3.2:-86034780 | None:intergenic |
| GAAATGAAATGGTTGGAGAA+TGG | 0.518175 | 3.2:-86034425 | None:intergenic |
| ACTAATTCCCTCACGTTCAC+CGG | 0.518657 | 3.2:-86034929 | None:intergenic |
| TGAGACACGGAGTTGATCAA+TGG | 0.519658 | 3.2:-86034816 | None:intergenic |
| CTACTCCGGCAATCCTTGCC+CGG | 0.523473 | 3.2:+86034643 | MS.gene015041:CDS |
| ACAGAACCCATCTGAGATAC+CGG | 0.527743 | 3.2:-86034989 | None:intergenic |
| ACCCATCCAATATCAGGGAC+AGG | 0.527836 | 3.2:-86035160 | None:intergenic |
| ACAAAGCTGAGTTCTGTAAC+GGG | 0.529200 | 3.2:-86034747 | None:intergenic |
| ATGAAGGGGTTTCTATGGAG+AGG | 0.530332 | 3.2:+86035056 | MS.gene015041:CDS |
| CCCTGATATTGGATGGGTTG+CGG | 0.534129 | 3.2:+86035165 | MS.gene015041:CDS |
| AAAGTGGCAAGAATCACCTT+TGG | 0.537660 | 3.2:-86034690 | None:intergenic |
| ATGGAGTCCGGTATCTCAGA+TGG | 0.538705 | 3.2:+86034982 | MS.gene015041:CDS |
| GTCCTAATTTGCGAAACTCC+GGG | 0.542282 | 3.2:-86034661 | None:intergenic |
| CGTTATTAATATTTGAGACA+CGG | 0.544891 | 3.2:-86034829 | None:intergenic |
| GTCTTCCATCAAACTATGAA+GGG | 0.551277 | 3.2:+86035041 | MS.gene015041:CDS |
| CAAACCTTAAAATCCCTGAA+TGG | 0.551949 | 3.2:+86034378 | MS.gene015041:CDS |
| GGGAATTAGTTGGCTTCATG+AGG | 0.558865 | 3.2:+86034942 | MS.gene015041:CDS |
| AATTTGCGAAACTCCGGGCA+AGG | 0.560424 | 3.2:-86034656 | None:intergenic |
| ACACCGTATCGAGGTTTCCT+CGG | 0.574430 | 3.2:-86034902 | None:intergenic |
| TAGGGTTGATGAATGGAGTC+CGG | 0.576489 | 3.2:+86034970 | MS.gene015041:CDS |
| TACAAAGCTGAGTTCTGTAA+CGG | 0.577054 | 3.2:-86034748 | None:intergenic |
| AGGGGTTTCTATGGAGAGGG+TGG | 0.581223 | 3.2:+86035060 | MS.gene015041:CDS |
| GTGTCCCTCCGGTGAACGTG+AGG | 0.581697 | 3.2:+86034921 | MS.gene015041:CDS |
| CAAAGAAGCAAACTCGTCGC+CGG | 0.584023 | 3.2:-86034787 | None:intergenic |
| GTGAACGTGAGGGAATTAGT+TGG | 0.588119 | 3.2:+86034932 | MS.gene015041:CDS |
| AACGTGGTAGGTCTCATGAC+TGG | 0.591872 | 3.2:+86034558 | MS.gene015041:CDS |
| GGAGTGTTAGGGTTGATGAA+TGG | 0.595988 | 3.2:+86034963 | MS.gene015041:CDS |
| AAATTAGGACACTGCACCAA+AGG | 0.596122 | 3.2:+86034674 | MS.gene015041:CDS |
| TTCGAAAATGCCAACGTGGT+AGG | 0.602152 | 3.2:+86034546 | MS.gene015041:CDS |
| ATTGGTCTGTTGAGAAAACA+TGG | 0.611650 | 3.2:-86034502 | None:intergenic |
| AGCTGAGTTCTGTAACGGGA+AGG | 0.612629 | 3.2:-86034743 | None:intergenic |
| GTGTTTGGTTCTCCACCAGG+TGG | 0.617183 | 3.2:+86035010 | MS.gene015041:CDS |
| TGGAGTCCGGTATCTCAGAT+GGG | 0.620816 | 3.2:+86034983 | MS.gene015041:CDS |
| CCGCAACCCATCCAATATCA+GGG | 0.621198 | 3.2:-86035165 | None:intergenic |
| TCTTCCATCAAACTATGAAG+GGG | 0.627249 | 3.2:+86035042 | MS.gene015041:CDS |
| GGTAGATTGAACTCAAACGA+TGG | 0.627699 | 3.2:+86035124 | MS.gene015041:CDS |
| ATTCCCTCACGTTCACCGGA+GGG | 0.629594 | 3.2:-86034925 | None:intergenic |
| CCTCCGAGGAAACCTCGATA+CGG | 0.630315 | 3.2:+86034899 | MS.gene015041:CDS |
| AGAACTCAGCTTTGTAACGA+CGG | 0.632022 | 3.2:+86034755 | MS.gene015041:CDS |
| CAGTTCTTGATTCTCCTCCG+AGG | 0.634516 | 3.2:+86034885 | MS.gene015041:CDS |
| AATTCCCTCACGTTCACCGG+AGG | 0.638441 | 3.2:-86034926 | None:intergenic |
| GATTGTCCATACTCTCATCC+CGG | 0.639508 | 3.2:+86034584 | MS.gene015041:CDS |
| TCTGTTGAGAAAACATGGAT+CGG | 0.643208 | 3.2:-86034497 | None:intergenic |
| TGAAGGGGTTTCTATGGAGA+GGG | 0.646493 | 3.2:+86035057 | MS.gene015041:CDS |
| CCCATCCAATATCAGGGACA+GGG | 0.654742 | 3.2:-86035159 | None:intergenic |
| TGTCCCTCCGGTGAACGTGA+GGG | 0.657063 | 3.2:+86034922 | MS.gene015041:CDS |
| TGGTAGGTCTCATGACTGGA+CGG | 0.659097 | 3.2:+86034562 | MS.gene015041:CDS |
| ACCGGAGGGACACCGTATCG+AGG | 0.671631 | 3.2:-86034911 | None:intergenic |
| AGTCATGAGACCTACCACGT+TGG | 0.672854 | 3.2:-86034556 | None:intergenic |
| ATGGAACACAACACAATACG+AGG | 0.674097 | 3.2:+86034397 | MS.gene015041:CDS |
| CCGTATCGAGGTTTCCTCGG+AGG | 0.710192 | 3.2:-86034899 | None:intergenic |
| AAAGTTCGAAAATGCCAACG+TGG | 0.760484 | 3.2:+86034542 | MS.gene015041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCAAATTTTGCATAGATTT+TGG | - | chr3.2:86035107-86035126 | None:intergenic | 25.0% |
| !! | CGTTATTAATATTTGAGACA+CGG | - | chr3.2:86034832-86034851 | None:intergenic | 25.0% |
| !! | CTATGTCATTTGAAATGAAA+TGG | - | chr3.2:86034439-86034458 | None:intergenic | 25.0% |
| GAACTTTGAATTCGAACATT+CGG | - | chr3.2:86034529-86034548 | None:intergenic | 30.0% | |
| GCCAAAATCTATGCAAAATT+TGG | + | chr3.2:86035103-86035122 | MS.gene015041:CDS | 30.0% | |
| ! | GTCATTTGAAATGAAATGGT+TGG | - | chr3.2:86034435-86034454 | None:intergenic | 30.0% |
| AAACTATGAAGGGGTTTCTA+TGG | + | chr3.2:86035051-86035070 | MS.gene015041:CDS | 35.0% | |
| AGTCTTCCATCAAACTATGA+AGG | + | chr3.2:86035040-86035059 | MS.gene015041:CDS | 35.0% | |
| ATTGTGTTGTGTTCCATTCA+GGG | - | chr3.2:86034394-86034413 | None:intergenic | 35.0% | |
| CAAACCTTAAAATCCCTGAA+TGG | + | chr3.2:86034378-86034397 | MS.gene015041:CDS | 35.0% | |
| CCTCAAAAATACAACTACTC+CGG | + | chr3.2:86034629-86034648 | MS.gene015041:CDS | 35.0% | |
| GAAATGAAATGGTTGGAGAA+TGG | - | chr3.2:86034428-86034447 | None:intergenic | 35.0% | |
| GGAGATGAAACAAATGATTC+TGG | - | chr3.2:86034860-86034879 | None:intergenic | 35.0% | |
| GTCTTCCATCAAACTATGAA+GGG | + | chr3.2:86035041-86035060 | MS.gene015041:CDS | 35.0% | |
| TACAAAGCTGAGTTCTGTAA+CGG | - | chr3.2:86034751-86034770 | None:intergenic | 35.0% | |
| TATTGTGTTGTGTTCCATTC+AGG | - | chr3.2:86034395-86034414 | None:intergenic | 35.0% | |
| TCTGTTGAGAAAACATGGAT+CGG | - | chr3.2:86034500-86034519 | None:intergenic | 35.0% | |
| TCTTCCATCAAACTATGAAG+GGG | + | chr3.2:86035042-86035061 | MS.gene015041:CDS | 35.0% | |
| TGAATTCGAACATTCGGAAT+TGG | - | chr3.2:86034523-86034542 | None:intergenic | 35.0% | |
| ! | ATTGGTCTGTTGAGAAAACA+TGG | - | chr3.2:86034505-86034524 | None:intergenic | 35.0% |
| ! | TGTTCCATTCAGGGATTTTA+AGG | - | chr3.2:86034385-86034404 | None:intergenic | 35.0% |
| !! | CGGAGTAGTTGTATTTTTGA+GGG | - | chr3.2:86034631-86034650 | None:intergenic | 35.0% |
| !!! | CATTCAGGGATTTTAAGGTT+TGG | - | chr3.2:86034380-86034399 | None:intergenic | 35.0% |
| AAAGTGGCAAGAATCACCTT+TGG | - | chr3.2:86034693-86034712 | None:intergenic | 40.0% | |
| AAAGTTCGAAAATGCCAACG+TGG | + | chr3.2:86034542-86034561 | MS.gene015041:CDS | 40.0% | |
| AAATTAGGACACTGCACCAA+AGG | + | chr3.2:86034674-86034693 | MS.gene015041:CDS | 40.0% | |
| ACAAAGCTGAGTTCTGTAAC+GGG | - | chr3.2:86034750-86034769 | None:intergenic | 40.0% | |
| ATGGAACACAACACAATACG+AGG | + | chr3.2:86034397-86034416 | MS.gene015041:CDS | 40.0% | |
| CAAAAACACCATGAGCAAAG+TGG | - | chr3.2:86034709-86034728 | None:intergenic | 40.0% | |
| GAAACCCCTTCATAGTTTGA+TGG | - | chr3.2:86035049-86035068 | None:intergenic | 40.0% | |
| GGAGAATCAAGAACTGAAGT+AGG | - | chr3.2:86034881-86034900 | None:intergenic | 40.0% | |
| GGTAGATTGAACTCAAACGA+TGG | + | chr3.2:86035124-86035143 | MS.gene015041:CDS | 40.0% | |
| ! | AGAACTCAGCTTTGTAACGA+CGG | + | chr3.2:86034755-86034774 | MS.gene015041:CDS | 40.0% |
| ! | TGTCCTAATTTGCGAAACTC+CGG | - | chr3.2:86034665-86034684 | None:intergenic | 40.0% |
| !! | CCGGAGTAGTTGTATTTTTG+AGG | - | chr3.2:86034632-86034651 | None:intergenic | 40.0% |
| !! | CTCAAACGATGGTGTTGTTT+CGG | + | chr3.2:86035135-86035154 | MS.gene015041:CDS | 40.0% |
| !! | CTCATGGTGTTTTTGAATGC+TGG | + | chr3.2:86034714-86034733 | MS.gene015041:CDS | 40.0% |
| !! | TGTATTTTTGAGGGTCTCTC+CGG | - | chr3.2:86034622-86034641 | None:intergenic | 40.0% |
| ACTAATTCCCTCACGTTCAC+CGG | - | chr3.2:86034932-86034951 | None:intergenic | 45.0% | |
| AGACTCAAAAAACCACCTGG+TGG | - | chr3.2:86035025-86035044 | None:intergenic | 45.0% | |
| ATGAAGGGGTTTCTATGGAG+AGG | + | chr3.2:86035056-86035075 | MS.gene015041:CDS | 45.0% | |
| GATTGTCCATACTCTCATCC+CGG | + | chr3.2:86034584-86034603 | MS.gene015041:CDS | 45.0% | |
| GGAAGACTCAAAAAACCACC+TGG | - | chr3.2:86035028-86035047 | None:intergenic | 45.0% | |
| GTGAACGTGAGGGAATTAGT+TGG | + | chr3.2:86034932-86034951 | MS.gene015041:CDS | 45.0% | |
| TGAAGGGGTTTCTATGGAGA+GGG | + | chr3.2:86035057-86035076 | MS.gene015041:CDS | 45.0% | |
| TTCGAAAATGCCAACGTGGT+AGG | + | chr3.2:86034546-86034565 | MS.gene015041:CDS | 45.0% | |
| ! | ACAGAACCCATCTGAGATAC+CGG | - | chr3.2:86034992-86035011 | None:intergenic | 45.0% |
| ! | GGGAATTAGTTGGCTTCATG+AGG | + | chr3.2:86034942-86034961 | MS.gene015041:CDS | 45.0% |
| ! | GTCCTAATTTGCGAAACTCC+GGG | - | chr3.2:86034664-86034683 | None:intergenic | 45.0% |
| ! | TCTCAGATGGGTTCTGTGTT+TGG | + | chr3.2:86034995-86035014 | MS.gene015041:CDS | 45.0% |
| ! | TGAGACACGGAGTTGATCAA+TGG | - | chr3.2:86034819-86034838 | None:intergenic | 45.0% |
| !! | GATTCTTGCCACTTTGCTCA+TGG | + | chr3.2:86034698-86034717 | MS.gene015041:CDS | 45.0% |
| !! | GGAGTGTTAGGGTTGATGAA+TGG | + | chr3.2:86034963-86034982 | MS.gene015041:CDS | 45.0% |
| !! | TAGGGTTGATGAATGGAGTC+CGG | + | chr3.2:86034970-86034989 | MS.gene015041:CDS | 45.0% |
| !! | TGGCTTCATGAGGAGTGTTA+GGG | + | chr3.2:86034952-86034971 | MS.gene015041:CDS | 45.0% |
| !! | TTGGCTTCATGAGGAGTGTT+AGG | + | chr3.2:86034951-86034970 | MS.gene015041:CDS | 45.0% |
| AACGTGGTAGGTCTCATGAC+TGG | + | chr3.2:86034558-86034577 | MS.gene015041:CDS | 50.0% | |
| AATTTGCGAAACTCCGGGCA+AGG | - | chr3.2:86034659-86034678 | None:intergenic | 50.0% | |
| ACACCGTATCGAGGTTTCCT+CGG | - | chr3.2:86034905-86034924 | None:intergenic | 50.0% | |
| ACCCATCCAATATCAGGGAC+AGG | - | chr3.2:86035163-86035182 | None:intergenic | 50.0% | |
| AGTCATGAGACCTACCACGT+TGG | - | chr3.2:86034559-86034578 | None:intergenic | 50.0% | |
| ATGGAGTCCGGTATCTCAGA+TGG | + | chr3.2:86034982-86035001 | MS.gene015041:CDS | 50.0% | |
| CAAAGAAGCAAACTCGTCGC+CGG | - | chr3.2:86034790-86034809 | None:intergenic | 50.0% | |
| CAGTTCTTGATTCTCCTCCG+AGG | + | chr3.2:86034885-86034904 | MS.gene015041:CDS | 50.0% | |
| CCCATCCAATATCAGGGACA+GGG | - | chr3.2:86035162-86035181 | None:intergenic | 50.0% | |
| CCCTGTCCCTGATATTGGAT+GGG | + | chr3.2:86035159-86035178 | MS.gene015041:CDS | 50.0% | |
| CCGCAACCCATCCAATATCA+GGG | - | chr3.2:86035168-86035187 | None:intergenic | 50.0% | |
| TCCCTGTCCCTGATATTGGA+TGG | + | chr3.2:86035158-86035177 | MS.gene015041:CDS | 50.0% | |
| TCCGCAACCCATCCAATATC+AGG | - | chr3.2:86035169-86035188 | None:intergenic | 50.0% | |
| TCTATGGAGAGGGTGGAATC+AGG | + | chr3.2:86035067-86035086 | MS.gene015041:CDS | 50.0% | |
| TGCCCGGAGTTTCGCAAATT+AGG | + | chr3.2:86034659-86034678 | MS.gene015041:CDS | 50.0% | |
| TGGAGTCCGGTATCTCAGAT+GGG | + | chr3.2:86034983-86035002 | MS.gene015041:CDS | 50.0% | |
| TGGTAGGTCTCATGACTGGA+CGG | + | chr3.2:86034562-86034581 | MS.gene015041:CDS | 50.0% | |
| ! | AGCTGAGTTCTGTAACGGGA+AGG | - | chr3.2:86034746-86034765 | None:intergenic | 50.0% |
| ! | TTTTCGCCGGGATGAGAGTA+TGG | - | chr3.2:86034593-86034612 | None:intergenic | 50.0% |
| !! | CCCTGATATTGGATGGGTTG+CGG | + | chr3.2:86035165-86035184 | MS.gene015041:CDS | 50.0% |
| !! | TCTGTGTTTGGTTCTCCACC+AGG | + | chr3.2:86035007-86035026 | MS.gene015041:CDS | 50.0% |
| AAACTCCGGGCAAGGATTGC+CGG | - | chr3.2:86034651-86034670 | None:intergenic | 55.0% | |
| AATTCCCTCACGTTCACCGG+AGG | - | chr3.2:86034929-86034948 | None:intergenic | 55.0% | |
| AGGGGTTTCTATGGAGAGGG+TGG | + | chr3.2:86035060-86035079 | MS.gene015041:CDS | 55.0% | |
| ATTCCCTCACGTTCACCGGA+GGG | - | chr3.2:86034928-86034947 | None:intergenic | 55.0% | |
| CCTCCGAGGAAACCTCGATA+CGG | + | chr3.2:86034899-86034918 | MS.gene015041:CDS | 55.0% | |
| GTAACGACGGAACCCTTTGC+CGG | + | chr3.2:86034768-86034787 | MS.gene015041:CDS | 55.0% | |
| TCGGTCCCTGTCCCTGATAT+TGG | + | chr3.2:86035154-86035173 | MS.gene015041:CDS | 55.0% | |
| !! | GTGTTTGGTTCTCCACCAGG+TGG | + | chr3.2:86035010-86035029 | MS.gene015041:CDS | 55.0% |
| ACCTCGATACGGTGTCCCTC+CGG | + | chr3.2:86034910-86034929 | MS.gene015041:CDS | 60.0% | |
| AGCAAACTCGTCGCCGGCAA+AGG | - | chr3.2:86034784-86034803 | None:intergenic | 60.0% | |
| ATCCCGGCGAAAAAGCTCGC+CGG | + | chr3.2:86034600-86034619 | MS.gene015041:CDS | 60.0% | |
| CCGTATCGAGGTTTCCTCGG+AGG | - | chr3.2:86034902-86034921 | None:intergenic | 60.0% | |
| CTACTCCGGCAATCCTTGCC+CGG | + | chr3.2:86034643-86034662 | MS.gene015041:CDS | 60.0% | |
| GCAAACTCGTCGCCGGCAAA+GGG | - | chr3.2:86034783-86034802 | None:intergenic | 60.0% | |
| TGTCCCTCCGGTGAACGTGA+GGG | + | chr3.2:86034922-86034941 | MS.gene015041:CDS | 60.0% | |
| !!! | TCTCCGGCGAGCTTTTTCGC+CGG | - | chr3.2:86034606-86034625 | None:intergenic | 60.0% |
| ACCGGAGGGACACCGTATCG+AGG | - | chr3.2:86034914-86034933 | None:intergenic | 65.0% | |
| GTGTCCCTCCGGTGAACGTG+AGG | + | chr3.2:86034921-86034940 | MS.gene015041:CDS | 65.0% | |
| !!! | CTCCGGCGAGCTTTTTCGCC+GGG | - | chr3.2:86034605-86034624 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 86034365 | 86035201 | 86034365 | ID=MS.gene015041 |
| chr3.2 | mRNA | 86034365 | 86035201 | 86034365 | ID=MS.gene015041.t1;Parent=MS.gene015041 |
| chr3.2 | exon | 86034365 | 86035201 | 86034365 | ID=MS.gene015041.t1.exon1;Parent=MS.gene015041.t1 |
| chr3.2 | CDS | 86034365 | 86035201 | 86034365 | ID=cds.MS.gene015041.t1;Parent=MS.gene015041.t1 |
| Gene Sequence |
| Protein sequence |
