AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015043

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015043.t1 MTR_3g103590 85.246 305 23 7 1 295 12 304 1.34e-156 439
MS.gene015043.t1 MTR_1g017090 50.000 294 120 11 6 291 11 285 1.49e-75 233
MS.gene015043.t1 MTR_5g014890 60.736 163 57 4 125 287 114 269 8.95e-59 189
MS.gene015043.t1 MTR_7g093430 69.841 126 35 2 124 249 150 272 9.54e-56 182
MS.gene015043.t1 MTR_1g054285 67.969 128 38 2 124 251 144 268 7.05e-55 180
MS.gene015043.t1 MTR_4g097600 66.142 127 40 2 123 249 116 239 2.29e-53 175
MS.gene015043.t1 MTR_2g061030 65.116 129 42 2 125 253 191 316 4.88e-51 171
MS.gene015043.t1 MTR_4g100550 54.967 151 64 2 124 273 110 257 2.51e-50 167
MS.gene015043.t1 MTR_5g013010 52.326 172 77 3 96 266 99 266 3.75e-50 167
MS.gene015043.t1 MTR_8g006705 68.376 117 33 2 133 248 145 258 3.52e-49 166
MS.gene015043.t1 MTR_4g084750 55.118 127 54 1 125 248 56 182 3.50e-42 144
MS.gene015043.t1 MTR_2g038625 49.102 167 74 4 105 265 50 211 2.53e-39 137
MS.gene015043.t1 MTR_2g038580 49.102 167 74 4 105 265 50 211 2.53e-39 137
MS.gene015043.t1 MTR_4g126900 56.557 122 36 4 136 248 90 203 2.70e-32 119
MS.gene015043.t1 MTR_5g013010 69.355 62 19 0 124 185 126 187 9.07e-22 91.3
MS.gene015043.t1 MTR_1g061660 43.820 89 50 0 134 222 59 147 1.70e-18 82.8
MS.gene015043.t1 MTR_6g007647 48.352 91 47 0 131 221 30 120 2.24e-18 82.8
MS.gene015043.t1 MTR_6g007647 48.352 91 47 0 131 221 64 154 2.78e-18 83.2
MS.gene015043.t1 MTR_5g039000 40.351 114 58 2 122 225 62 175 5.46e-17 79.7
MS.gene015043.t1 MTR_7g010020 40.952 105 55 1 124 221 70 174 6.24e-17 79.3
MS.gene015043.t1 MTR_7g103340 39.604 101 60 1 122 221 50 150 2.13e-16 77.0
MS.gene015043.t1 MTR_5g038280 45.745 94 44 1 134 220 87 180 2.14e-16 78.6
MS.gene015043.t1 MTR_4g107650 37.879 132 77 1 90 221 56 182 4.12e-16 77.8
MS.gene015043.t1 MTR_8g469430 46.809 94 43 1 134 220 89 182 5.60e-16 76.6
MS.gene015043.t1 MTR_3g086790 45.361 97 46 1 132 221 58 154 9.48e-16 76.3
MS.gene015043.t1 MTR_8g468210 40.000 100 57 1 125 221 65 164 1.01e-15 75.9
MS.gene015043.t1 MTR_3g080100 36.567 134 72 3 134 260 20 147 5.91e-15 72.8
MS.gene015043.t1 MTR_3g080100 36.567 134 72 3 134 260 59 186 7.36e-15 73.2
MS.gene015043.t1 MTR_6g011610 44.681 94 45 1 134 220 96 189 7.78e-15 73.6
MS.gene015043.t1 MTR_8g089895 40.909 110 61 1 122 227 42 151 1.21e-14 73.2
MS.gene015043.t1 MTR_6g011610 44.681 94 45 1 134 220 77 170 1.66e-14 72.4
MS.gene015043.t1 MTR_8g026960 37.000 100 60 1 138 237 38 134 1.54e-12 66.2
MS.gene015043.t1 MTR_3g092150 43.529 85 48 0 137 221 41 125 4.55e-12 65.1
MS.gene015043.t1 MTR_5g019650 43.158 95 49 1 124 218 48 137 8.93e-12 63.9
MS.gene015043.t1 MTR_5g019680 39.423 104 58 1 124 227 48 146 5.02e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015043.t1 AT5G06710 58.788 165 60 4 90 254 151 307 6.58e-56 184
MS.gene015043.t1 AT4G37790 69.291 127 36 2 123 249 115 238 6.36e-55 179
MS.gene015043.t1 AT2G22800 68.800 125 36 2 125 249 104 225 4.63e-53 174
MS.gene015043.t1 AT4G16780 40.996 261 110 4 42 267 9 260 2.64e-52 173
MS.gene015043.t1 AT3G60390 64.567 127 41 2 123 248 151 274 4.18e-50 168
MS.gene015043.t1 AT5G47370 61.719 128 45 2 123 249 119 243 3.36e-47 160
MS.gene015043.t1 AT4G17460 61.905 126 44 2 125 249 126 248 4.14e-47 159
MS.gene015043.t1 AT2G44910 64.407 118 38 2 133 249 162 276 2.00e-46 159
MS.gene015043.t1 AT2G01430 55.639 133 48 3 123 249 122 249 7.60e-41 143
MS.gene015043.t1 AT1G70920 46.939 147 66 3 122 267 26 161 1.60e-35 126
MS.gene015043.t1 AT1G70920 50.388 129 53 2 122 249 56 174 1.96e-35 127
MS.gene015043.t1 AT5G06710 57.292 96 36 2 90 185 151 241 5.68e-24 98.6
MS.gene015043.t1 AT2G01430 62.319 69 20 2 123 185 122 190 2.96e-19 84.7
MS.gene015043.t1 AT3G01470 54.167 72 33 0 134 205 68 139 2.10e-16 77.8
MS.gene015043.t1 AT5G03790 40.000 95 57 0 128 222 71 165 5.87e-16 75.9
MS.gene015043.t1 AT1G69780 40.541 111 56 2 125 225 73 183 7.37e-16 76.6
MS.gene015043.t1 AT2G18550 46.154 91 49 0 130 220 57 147 3.61e-15 73.6
MS.gene015043.t1 AT5G15150 40.741 108 52 2 125 220 101 208 4.04e-15 74.7
MS.gene015043.t1 AT2G36610 35.714 126 66 3 110 222 44 167 6.50e-15 72.0
MS.gene015043.t1 AT1G27045 51.389 72 35 0 134 205 68 139 1.16e-14 72.0
MS.gene015043.t1 AT1G27045 51.389 72 35 0 134 205 25 96 1.25e-14 71.2
MS.gene015043.t1 AT1G27045 51.389 72 35 0 134 205 25 96 1.25e-14 71.2
MS.gene015043.t1 AT1G27045 51.389 72 35 0 134 205 17 88 1.25e-14 70.9
MS.gene015043.t1 AT5G03790 36.066 122 73 1 128 244 71 192 1.52e-14 71.2
MS.gene015043.t1 AT1G26960 44.318 88 49 0 134 221 71 158 1.56e-14 72.4
MS.gene015043.t1 AT1G27045 51.389 72 35 0 134 205 68 139 1.94e-14 72.0
MS.gene015043.t1 AT4G40060 40.187 107 56 2 132 231 57 162 2.08e-14 72.4
MS.gene015043.t1 AT5G65310 42.857 98 49 1 131 221 51 148 3.15e-14 72.0
MS.gene015043.t1 AT5G65310 42.857 98 49 1 131 221 69 166 3.70e-14 72.0
MS.gene015043.t1 AT2G22430 42.268 97 49 1 132 221 60 156 4.52e-14 71.6
MS.gene015043.t1 AT3G01220 35.593 118 66 2 100 212 53 165 4.90e-14 71.2
MS.gene015043.t1 AT4G36740 40.816 98 58 0 130 227 51 148 8.14e-14 69.7
MS.gene015043.t1 AT4G36740 40.816 98 58 0 130 227 52 149 8.19e-14 69.7
MS.gene015043.t1 AT3G61890 37.000 100 60 1 137 236 33 129 5.70e-12 64.7
MS.gene015043.t1 AT2G46680 37.895 95 55 1 137 227 35 129 9.23e-12 64.3
MS.gene015043.t1 AT2G46680 40.000 85 51 0 137 221 35 119 1.75e-11 63.5

Find 70 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTTCAATATTATTATT+AGG 0.146207 3.2:-86006213 None:intergenic
TCTCTTCAATATTATTATTA+GGG 0.203525 3.2:-86006212 None:intergenic
TATTTGCATAGAAGTGAATT+TGG 0.206531 3.2:-86007695 None:intergenic
ACTCCTAAGGTAAGAGAATA+TGG 0.209934 3.2:-86006183 None:intergenic
CTGGCTCATGATGTACTTCT+TGG 0.248157 3.2:-86006392 None:intergenic
CAAGATTGAGGATTGTTCTT+TGG 0.279678 3.2:-86006481 None:intergenic
ATTTCTCTTGGTCTTGGTCT+TGG 0.292030 3.2:+86006087 MS.gene015043:CDS
AAGCTGCATGTAATTATTTA+CGG 0.292324 3.2:-86007559 None:intergenic
CTCCCTCTTGATGCTATTAG+AGG 0.294156 3.2:-86006352 None:intergenic
TAGAAGTGAATTTGGGCCTT+TGG 0.313028 3.2:-86007687 None:intergenic
TTTGATATTTCTCTTGGTCT+TGG 0.326125 3.2:+86006081 MS.gene015043:CDS
TAAACAAAGCAAGAAGATTA+AGG 0.355539 3.2:+86006128 MS.gene015043:CDS
AGCAATAGTTGCAGAAGATT+TGG 0.363873 3.2:-86007736 None:intergenic
AGAAGTGAATTTGGGCCTTT+GGG 0.375155 3.2:-86007686 None:intergenic
AGAGGAGGATCCATGTAATA+AGG 0.377051 3.2:+86006155 MS.gene015043:CDS
AGCTGCATGTAATTATTTAC+GGG 0.380708 3.2:-86007558 None:intergenic
AAATAATTACATGCAGCTTC+CGG 0.384069 3.2:+86007563 MS.gene015043:CDS
AAGCCTAAGTTTCTTCCTAC+TGG 0.393408 3.2:-86006457 None:intergenic
AAGAGAAATATCAAAATTCA+TGG 0.395654 3.2:-86006073 None:intergenic
ATTTGCATAGAAGTGAATTT+GGG 0.397943 3.2:-86007694 None:intergenic
CATCACGCTAGTAGAATTAG+AGG 0.402844 3.2:-86006313 None:intergenic
CTCATCGCCGGTGCCGGTGC+CGG 0.407320 3.2:-86007628 None:intergenic
GAGAGTAGAATGATCTTTGA+AGG 0.413896 3.2:-86006511 None:intergenic
TGGAGGTGTGGTTTCAAAAC+AGG 0.418208 3.2:+86007023 MS.gene015043:CDS
CAAAGAACAATCCTCAATCT+TGG 0.418520 3.2:+86006482 MS.gene015043:CDS
TCAACAAATGAAATCTTCTC+TGG 0.427530 3.2:-86006411 None:intergenic
GTTTATGTCTTTGTTCATGA+AGG 0.439832 3.2:-86006110 None:intergenic
TCAGAAGCAAAAGCAAGAAT+TGG 0.442692 3.2:+86006970 MS.gene015043:intron
CAAGAAGATTAAGGAGGAAG+AGG 0.445576 3.2:+86006137 MS.gene015043:CDS
CTTGATGCTATTAGAGGAGT+TGG 0.458659 3.2:-86006346 None:intergenic
GCCATTCTCATCGCCGGTGC+CGG 0.463859 3.2:-86007634 None:intergenic
TATTCTCTTACCTTAGGAGT+TGG 0.474125 3.2:+86006186 MS.gene015043:CDS
TGGCAAGCAAGCTGAATCTT+CGG 0.477653 3.2:+86006990 MS.gene015043:CDS
TACTACAACAAAGACTGAAT+CGG 0.478308 3.2:+86006260 MS.gene015043:CDS
TACCCATATTCTCTTACCTT+AGG 0.484324 3.2:+86006180 MS.gene015043:CDS
ATTTGCACCGGCACCGGCAC+CGG 0.484691 3.2:+86007621 MS.gene015043:CDS
GAAGGTGTCCTCCAAGATTG+AGG 0.485914 3.2:-86006493 None:intergenic
ACCGGCACCGGCGATGAGAA+TGG 0.503337 3.2:+86007633 MS.gene015043:CDS
TATGGGTATGCCTTATTACA+TGG 0.508332 3.2:-86006165 None:intergenic
CTCCTAAGGTAAGAGAATAT+GGG 0.512060 3.2:-86006182 None:intergenic
AAAAGAATTTGCACCGGCAC+CGG 0.514546 3.2:+86007615 MS.gene015043:CDS
AATCAAAGCCGTGGTGTGAG+AGG 0.529506 3.2:-86007658 None:intergenic
AAAGCTGAAACAAACGGAAG+TGG 0.530773 3.2:+86007434 MS.gene015043:CDS
GGCTTTGATTCTCTGCCCAA+AGG 0.536458 3.2:+86007671 MS.gene015043:CDS
CTCTTCAATATTATTATTAG+GGG 0.543753 3.2:-86006211 None:intergenic
CTCTAACAGAAGAGAACAAG+AGG 0.544383 3.2:+86007487 MS.gene015043:CDS
CAGGACAAAGCTGAAACAAA+CGG 0.546061 3.2:+86007428 MS.gene015043:intron
AGATCATTCTACTCTCAATC+CGG 0.548356 3.2:+86006518 MS.gene015043:CDS
ACTCCAGTAGGAAGAAACTT+AGG 0.556676 3.2:+86006454 MS.gene015043:CDS
GGACGAGACAAGTGGAGGTG+TGG 0.566994 3.2:+86007011 MS.gene015043:CDS
ATTAGGGGATCCAACTCCTA+AGG 0.574104 3.2:-86006196 None:intergenic
GAAGATTAAGGAGGAAGAGG+AGG 0.576607 3.2:+86006140 MS.gene015043:CDS
CAAACTGTAAGACTAGCAAC+CGG 0.577850 3.2:-86007582 None:intergenic
AGAGGAGCCATTCTCATCGC+CGG 0.585404 3.2:-86007640 None:intergenic
GGTTTCAAAACAGGAGGGCA+AGG 0.585888 3.2:+86007032 MS.gene015043:CDS
AGAACAATCCTCAATCTTGG+AGG 0.594021 3.2:+86006485 MS.gene015043:CDS
AGGTGTGGTTTCAAAACAGG+AGG 0.617414 3.2:+86007026 MS.gene015043:CDS
AGAGAACAAGAGGCTAGAAG+AGG 0.618606 3.2:+86007497 MS.gene015043:CDS
ACTCCTCTAATAGCATCAAG+AGG 0.625878 3.2:+86006349 MS.gene015043:CDS
ATGTAAATGATAACTCCAGT+AGG 0.626226 3.2:+86006442 MS.gene015043:CDS
TCTTGTAAAAGAATTTGCAC+CGG 0.632422 3.2:+86007609 MS.gene015043:CDS
GAATCTTCGGACGAGACAAG+TGG 0.639016 3.2:+86007003 MS.gene015043:CDS
CTCCTCTAATAGCATCAAGA+GGG 0.641427 3.2:+86006350 MS.gene015043:CDS
ACAAAGCAAGAAGATTAAGG+AGG 0.671987 3.2:+86006131 MS.gene015043:CDS
TGGGCAGAGAATCAAAGCCG+TGG 0.678880 3.2:-86007667 None:intergenic
TCTTCGGACGAGACAAGTGG+AGG 0.693782 3.2:+86007006 MS.gene015043:CDS
ACAAACGGAAGTGGACTGTG+AGG 0.696543 3.2:+86007443 MS.gene015043:CDS
GGTGTGGTTTCAAAACAGGA+GGG 0.700214 3.2:+86007027 MS.gene015043:CDS
GCTTAAGTCCATGAAAACAA+CGG 0.721053 3.2:+86007530 MS.gene015043:CDS
GAATGGCTCCTCTCACACCA+CGG 0.757581 3.2:+86007650 MS.gene015043:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAATAAAATAAA+TGG - chr3.2:86006754-86006773 None:intergenic 0.0%
!!! TATTATTATAAATTTTTTTA+TGG + chr3.2:86007105-86007124 MS.gene015043:intron 0.0%
!! TAATATTATGTAAAAAAACA+TGG - chr3.2:86007090-86007109 None:intergenic 10.0%
!!! AAATTGAATAAATTTTTTGA+TGG + chr3.2:86006831-86006850 MS.gene015043:intron 10.0%
!!! ATTATAAATTTTTTTATGGT+TGG + chr3.2:86007109-86007128 MS.gene015043:intron 10.0%
!! ATAACATCATATTATATAGT+AGG - chr3.2:86006902-86006921 None:intergenic 15.0%
!! ATTTATTTGAGCAAATTAAT+TGG + chr3.2:86006591-86006610 MS.gene015043:intron 15.0%
!! TAAATTAACTAATATGTACT+TGG + chr3.2:86006563-86006582 MS.gene015043:intron 15.0%
!! TAACATCATATTATATAGTA+GGG - chr3.2:86006901-86006920 None:intergenic 15.0%
!! TCTCTTCAATATTATTATTA+GGG - chr3.2:86006215-86006234 None:intergenic 15.0%
!!! CAAAGATATTAGTTTTTTTT+AGG + chr3.2:86006651-86006670 MS.gene015043:intron 15.0%
!! AAGAATTTGAAGATATATAC+CGG - chr3.2:86006540-86006559 None:intergenic 20.0%
!! AAGAGAAATATCAAAATTCA+TGG - chr3.2:86006076-86006095 None:intergenic 20.0%
!! ATTTACCATATAATATATGC+AGG + chr3.2:86007409-86007428 MS.gene015043:intron 20.0%
!! CTCTTCAATATTATTATTAG+GGG - chr3.2:86006214-86006233 None:intergenic 20.0%
!! GTCTCTTCAATATTATTATT+AGG - chr3.2:86006216-86006235 None:intergenic 20.0%
!! GTTATTTATAAGTCATGAAT+TGG + chr3.2:86006917-86006936 MS.gene015043:intron 20.0%
!! TAAATAAAAATGAGTGCATT+TGG + chr3.2:86006774-86006793 MS.gene015043:intron 20.0%
!! TTTAATTACTTTGCTTTACA+AGG - chr3.2:86006814-86006833 None:intergenic 20.0%
!!! ATGAATTTTGATATTTCTCT+TGG + chr3.2:86006075-86006094 MS.gene015043:CDS 20.0%
!!! ATTAATCTTTTGAATCTTGT+GGG - chr3.2:86007199-86007218 None:intergenic 20.0%
! AAGCTGCATGTAATTATTTA+CGG - chr3.2:86007562-86007581 None:intergenic 25.0%
! ATTTGCATAGAAGTGAATTT+GGG - chr3.2:86007697-86007716 None:intergenic 25.0%
! TAAACAAAGCAAGAAGATTA+AGG + chr3.2:86006128-86006147 MS.gene015043:CDS 25.0%
! TATTTGCATAGAAGTGAATT+TGG - chr3.2:86007698-86007717 None:intergenic 25.0%
! TTTGTCCTGCATATATTATA+TGG - chr3.2:86007417-86007436 None:intergenic 25.0%
!! AACTATCCTTAAGAGTTTTA+AGG - chr3.2:86007160-86007179 None:intergenic 25.0%
!! GATTAATCTTTTGAATCTTG+TGG - chr3.2:86007200-86007219 None:intergenic 25.0%
!! TGCAAATTCTTTTACAAGAA+GGG - chr3.2:86007608-86007627 None:intergenic 25.0%
AAATAATTACATGCAGCTTC+CGG + chr3.2:86007563-86007582 MS.gene015043:CDS 30.0%
AGCTGCATGTAATTATTTAC+GGG - chr3.2:86007561-86007580 None:intergenic 30.0%
ATGTAAATGATAACTCCAGT+AGG + chr3.2:86006442-86006461 MS.gene015043:CDS 30.0%
CTTTACAAGGACTAAATACA+TGG - chr3.2:86006801-86006820 None:intergenic 30.0%
GTTTATGTCTTTGTTCATGA+AGG - chr3.2:86006113-86006132 None:intergenic 30.0%
TACTACAACAAAGACTGAAT+CGG + chr3.2:86006260-86006279 MS.gene015043:CDS 30.0%
TCAACAAATGAAATCTTCTC+TGG - chr3.2:86006414-86006433 None:intergenic 30.0%
TCTTGTAAAAGAATTTGCAC+CGG + chr3.2:86007609-86007628 MS.gene015043:CDS 30.0%
TTTGATATTTCTCTTGGTCT+TGG + chr3.2:86006081-86006100 MS.gene015043:CDS 30.0%
! GTGCAAATTCTTTTACAAGA+AGG - chr3.2:86007609-86007628 None:intergenic 30.0%
AAGCGACCTTAAAACTCTTA+AGG + chr3.2:86007151-86007170 MS.gene015043:intron 35.0%
ACAAAGCAAGAAGATTAAGG+AGG + chr3.2:86006131-86006150 MS.gene015043:CDS 35.0%
ACTCCTAAGGTAAGAGAATA+TGG - chr3.2:86006186-86006205 None:intergenic 35.0%
AGATCATTCTACTCTCAATC+CGG + chr3.2:86006518-86006537 MS.gene015043:CDS 35.0%
AGCAATAGTTGCAGAAGATT+TGG - chr3.2:86007739-86007758 None:intergenic 35.0%
CAAAGAACAATCCTCAATCT+TGG + chr3.2:86006482-86006501 MS.gene015043:CDS 35.0%
CAAGATTGAGGATTGTTCTT+TGG - chr3.2:86006484-86006503 None:intergenic 35.0%
CTCCTAAGGTAAGAGAATAT+GGG - chr3.2:86006185-86006204 None:intergenic 35.0%
GAGAGTAGAATGATCTTTGA+AGG - chr3.2:86006514-86006533 None:intergenic 35.0%
GCTTAAGTCCATGAAAACAA+CGG + chr3.2:86007530-86007549 MS.gene015043:CDS 35.0%
TACCCATATTCTCTTACCTT+AGG + chr3.2:86006180-86006199 MS.gene015043:CDS 35.0%
TATTCTCTTACCTTAGGAGT+TGG + chr3.2:86006186-86006205 MS.gene015043:CDS 35.0%
TCAGAAGCAAAAGCAAGAAT+TGG + chr3.2:86006970-86006989 MS.gene015043:intron 35.0%
TGCTTCTGATCATATGTCAA+AGG - chr3.2:86006959-86006978 None:intergenic 35.0%
! TATGGGTATGCCTTATTACA+TGG - chr3.2:86006168-86006187 None:intergenic 35.0%
AAAGCTGAAACAAACGGAAG+TGG + chr3.2:86007434-86007453 MS.gene015043:CDS 40.0%
AAGCCTAAGTTTCTTCCTAC+TGG - chr3.2:86006460-86006479 None:intergenic 40.0%
ACTCCAGTAGGAAGAAACTT+AGG + chr3.2:86006454-86006473 MS.gene015043:CDS 40.0%
ACTCCTCTAATAGCATCAAG+AGG + chr3.2:86006349-86006368 MS.gene015043:CDS 40.0%
AGAACAATCCTCAATCTTGG+AGG + chr3.2:86006485-86006504 MS.gene015043:CDS 40.0%
AGAAGTGAATTTGGGCCTTT+GGG - chr3.2:86007689-86007708 None:intergenic 40.0%
AGAGGAGGATCCATGTAATA+AGG + chr3.2:86006155-86006174 MS.gene015043:CDS 40.0%
CAAACTGTAAGACTAGCAAC+CGG - chr3.2:86007585-86007604 None:intergenic 40.0%
CAAGAAGATTAAGGAGGAAG+AGG + chr3.2:86006137-86006156 MS.gene015043:CDS 40.0%
CAGGACAAAGCTGAAACAAA+CGG + chr3.2:86007428-86007447 MS.gene015043:intron 40.0%
CATCACGCTAGTAGAATTAG+AGG - chr3.2:86006316-86006335 None:intergenic 40.0%
CTCCTCTAATAGCATCAAGA+GGG + chr3.2:86006350-86006369 MS.gene015043:CDS 40.0%
CTCTAACAGAAGAGAACAAG+AGG + chr3.2:86007487-86007506 MS.gene015043:CDS 40.0%
CTTGATGCTATTAGAGGAGT+TGG - chr3.2:86006349-86006368 None:intergenic 40.0%
TAGAAGTGAATTTGGGCCTT+TGG - chr3.2:86007690-86007709 None:intergenic 40.0%
!! ATTTCTCTTGGTCTTGGTCT+TGG + chr3.2:86006087-86006106 MS.gene015043:CDS 40.0%
AGAGAACAAGAGGCTAGAAG+AGG + chr3.2:86007497-86007516 MS.gene015043:CDS 45.0%
AGGTGTGGTTTCAAAACAGG+AGG + chr3.2:86007026-86007045 MS.gene015043:CDS 45.0%
ATTAGGGGATCCAACTCCTA+AGG - chr3.2:86006199-86006218 None:intergenic 45.0%
CTCCCTCTTGATGCTATTAG+AGG - chr3.2:86006355-86006374 None:intergenic 45.0%
CTGGCTCATGATGTACTTCT+TGG - chr3.2:86006395-86006414 None:intergenic 45.0%
GAAGATTAAGGAGGAAGAGG+AGG + chr3.2:86006140-86006159 MS.gene015043:CDS 45.0%
GGTGTGGTTTCAAAACAGGA+GGG + chr3.2:86007027-86007046 MS.gene015043:CDS 45.0%
TGGCAAGCAAGCTGAATCTT+CGG + chr3.2:86006990-86007009 MS.gene015043:CDS 45.0%
! AAAAGAATTTGCACCGGCAC+CGG + chr3.2:86007615-86007634 MS.gene015043:CDS 45.0%
! TGGAGGTGTGGTTTCAAAAC+AGG + chr3.2:86007023-86007042 MS.gene015043:CDS 45.0%
!!! AATTGAATAAATTTTTTAAA+TGG - chr3.2:86006727-86006746 None:intergenic 5.0%
AATCAAAGCCGTGGTGTGAG+AGG - chr3.2:86007661-86007680 None:intergenic 50.0%
GAATCTTCGGACGAGACAAG+TGG + chr3.2:86007003-86007022 MS.gene015043:CDS 50.0%
GGTTTCAAAACAGGAGGGCA+AGG + chr3.2:86007032-86007051 MS.gene015043:CDS 50.0%
TTGAGCGTGCGAAGGATACT+TGG + chr3.2:86007227-86007246 MS.gene015043:intron 50.0%
! GGCTTTGATTCTCTGCCCAA+AGG + chr3.2:86007671-86007690 MS.gene015043:CDS 50.0%
! GTCGCTTGCATGTCTAAGAC+TGG - chr3.2:86007138-86007157 None:intergenic 50.0%
!! ACAAACGGAAGTGGACTGTG+AGG + chr3.2:86007443-86007462 MS.gene015043:CDS 50.0%
!! GAAGGTGTCCTCCAAGATTG+AGG - chr3.2:86006496-86006515 None:intergenic 50.0%
!! GGGTTGTGCCGTTGTTTTCA+TGG - chr3.2:86007541-86007560 None:intergenic 50.0%
AGAGGAGCCATTCTCATCGC+CGG - chr3.2:86007643-86007662 None:intergenic 55.0%
ATCCTTCGCACGCTCAACTG+CGG - chr3.2:86007224-86007243 None:intergenic 55.0%
GAATGGCTCCTCTCACACCA+CGG + chr3.2:86007650-86007669 MS.gene015043:CDS 55.0%
TCTTCGGACGAGACAAGTGG+AGG + chr3.2:86007006-86007025 MS.gene015043:CDS 55.0%
TGGGCAGAGAATCAAAGCCG+TGG - chr3.2:86007670-86007689 None:intergenic 55.0%
GGACGAGACAAGTGGAGGTG+TGG + chr3.2:86007011-86007030 MS.gene015043:CDS 60.0%
CTCCGCAGTTGAGCGTGCGA+AGG + chr3.2:86007219-86007238 MS.gene015043:intron 65.0%
GCCATTCTCATCGCCGGTGC+CGG - chr3.2:86007637-86007656 None:intergenic 65.0%
!! ACCGGCACCGGCGATGAGAA+TGG + chr3.2:86007633-86007652 MS.gene015043:CDS 65.0%
!! ATTTGCACCGGCACCGGCAC+CGG + chr3.2:86007621-86007640 MS.gene015043:CDS 65.0%
!! CTCATCGCCGGTGCCGGTGC+CGG - chr3.2:86007631-86007650 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 86006066 86007764 86006066 ID=MS.gene015043
chr3.2 mRNA 86006066 86007764 86006066 ID=MS.gene015043.t1;Parent=MS.gene015043
chr3.2 exon 86006066 86006539 86006066 ID=MS.gene015043.t1.exon1;Parent=MS.gene015043.t1
chr3.2 CDS 86006066 86006539 86006066 ID=cds.MS.gene015043.t1;Parent=MS.gene015043.t1
chr3.2 exon 86006974 86007053 86006974 ID=MS.gene015043.t1.exon2;Parent=MS.gene015043.t1
chr3.2 CDS 86006974 86007053 86006974 ID=cds.MS.gene015043.t1;Parent=MS.gene015043.t1
chr3.2 exon 86007431 86007764 86007431 ID=MS.gene015043.t1.exon3;Parent=MS.gene015043.t1
chr3.2 CDS 86007431 86007764 86007431 ID=cds.MS.gene015043.t1;Parent=MS.gene015043.t1
Gene Sequence

>MS.gene015043

ATGAACACCATGAATTTTGATATTTCTCTTGGTCTTGGTCTTGGCCTTCATGAACAAAGACATAAACAAAGCAAGAAGATTAAGGAGGAAGAGGAGGATCCATGTAATAAGGCATACCCATATTCTCTTACCTTAGGAGTTGGATCCCCTAATAATAATATTGAAGAGACAGATAATCATCAAGTAGCTACTACTACTACAACAAAGACTGAATCGGATGAGTTTATTTATAATTTGCATCAACGTGCCTCTAATTCTACTAGCGTGATGTCTTCATTTTCCAACTCCTCTAATAGCATCAAGAGGGAGAGAAATGATTTCAACAGCCAAGAAGTACATCATGAGCCAGAGAAGATTTCATTTGTTGATGCTGATGATGTAAATGATAACTCCAGTAGGAAGAAACTTAGGCTTACCAAAGAACAATCCTCAATCTTGGAGGACACCTTCAAAGATCATTCTACTCTCAATCCGGTATATATCTTCAAATTCTTCATTAAATTAACTAATATGTACTTGGTTAGAATTTATTTGAGCAAATTAATTGGTTATAATTAGTGAGCATAATTAAATATGTTTTTTTTACAAAGATATTAGTTTTTTTTAGGAATTAAATATGTTTTTAATCTCTATAAAACGAGTATTATTTTAATTTAGTCCATTTAAAAAATTTATTCAATTTTAGCCATTTATTTTATTAATTTTTTTTAAATAAAAATGAGTGCATTTGGTCCATGTATTTAGTCCTTGTAAAGCAAAGTAATTAAATTGAATAAATTTTTTGATGGACTAAATTCAAGTAGTAACTAGTAGAGAGAAAAAACATAATTAACCCTACTATATAATATGATGTTATTTATAAGTCATGAATTGGTTTGATTTCTCATTTTCCTTTGACATATGATCAGAAGCAAAAGCAAGAATTGGCAAGCAAGCTGAATCTTCGGACGAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGGGCAAGGTTGTCATTCTATATTTACAATCATGATTCTCTCCATGTTTTTTTACATAATATTATTATAAATTTTTTTATGGTTGGAATCCAGTCTTAGACATGCAAGCGACCTTAAAACTCTTAAGGATAGTTTGTCGTCTATTTAAATCCCACAAGATTCAAAAGATTAATCTCCGCAGTTGAGCGTGCGAAGGATACTTGGTTAATTTCAACTCAAAATTATTTTAGATATAATAAATTGTCACATCAATTAATGATTATGATATCTCATATGCTATCAAACAAATGAAATTATATATTTTCACATAGTAGAATGCATGTGTAAAATTTACACACAAGCAAAATTCTTAAATGTAATCATATTTACCATATAATATATGCAGGACAAAGCTGAAACAAACGGAAGTGGACTGTGAGGCACTGAAGCATTGTTATGAAACTCTAACAGAAGAGAACAAGAGGCTAGAAGAGGAGTTGAAAGAGCTTAAGTCCATGAAAACAACGGCACAACCCGTAAATAATTACATGCAGCTTCCGGTTGCTAGTCTTACAGTTTGCCCTTCTTGTAAAAGAATTTGCACCGGCACCGGCACCGGCGATGAGAATGGCTCCTCTCACACCACGGCTTTGATTCTCTGCCCAAAGGCCCAAATTCACTTCTATGCAAATAATAATAACTATACGTTCGCCAAATCTTCTGCAACTATTGCTAGCTAG
Protein sequence

>MS.gene015043.t1

MNTMNFDISLGLGLGLHEQRHKQSKKIKEEEEDPCNKAYPYSLTLGVGSPNNNIEETDNHQVATTTTTKTESDEFIYNLHQRASNSTSVMSSFSNSSNSIKRERNDFNSQEVHHEPEKISFVDADDVNDNSSRKKLRLTKEQSSILEDTFKDHSTLNPKQKQELASKLNLRTRQVEVWFQNRRARTKLKQTEVDCEALKHCYETLTEENKRLEEELKELKSMKTTAQPVNNYMQLPVASLTVCPSCKRICTGTGTGDENGSSHTTALILCPKAQIHFYANNNNYTFAKSSATIAS