AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015077

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015077.t1 MTR_7g109640 51.322 643 177 13 4 537 173 788 0.0 557
MS.gene015077.t1 MTR_3g103120 57.496 567 185 10 4 538 292 834 0.0 549
MS.gene015077.t1 MTR_3g103110 48.974 682 183 12 3 538 131 793 0.0 543
MS.gene015077.t1 MTR_5g024390 57.175 439 156 9 109 536 2 419 2.15e-164 474
MS.gene015077.t1 MTR_5g024500 56.492 439 159 9 109 536 2 419 9.04e-162 467
MS.gene015077.t1 MTR_3g103160 84.142 309 26 3 1 309 1 286 3.15e-142 418
MS.gene015077.t1 MTR_3g103160 91.765 170 14 0 375 544 275 444 4.60e-104 320
MS.gene015077.t1 MTR_5g071340 37.002 527 261 15 30 538 613 1086 1.84e-91 303
MS.gene015077.t1 MTR_3g464550 36.832 505 269 12 46 536 540 1008 1.62e-86 290
MS.gene015077.t1 MTR_2g078040 34.234 444 244 10 106 536 758 1166 4.79e-68 239
MS.gene015077.t1 MTR_1g103830 33.976 415 234 7 106 510 602 986 3.52e-61 219
MS.gene015077.t1 MTR_1g072130 32.360 445 269 12 106 543 808 1227 7.33e-61 218
MS.gene015077.t1 MTR_1g068930 26.667 435 218 14 144 524 459 846 2.49e-39 153
MS.gene015077.t1 MTR_1g068930 26.667 435 218 14 144 524 496 883 2.80e-39 153
MS.gene015077.t1 MTR_7g095140 30.897 301 173 8 223 517 13 284 2.47e-37 142
MS.gene015077.t1 MTR_4g099530 27.340 406 243 12 138 536 138 498 8.50e-33 132
MS.gene015077.t1 MTR_4g056990 24.838 463 252 13 108 521 188 603 9.73e-32 130
MS.gene015077.t1 MTR_1g062330 25.495 455 229 15 144 531 386 797 1.22e-31 130
MS.gene015077.t1 MTR_4g050090 25.259 483 230 16 114 520 199 626 2.16e-30 126
MS.gene015077.t1 MTR_7g102610 25.373 469 230 17 136 534 527 945 3.57e-30 126
MS.gene015077.t1 MTR_4g057290 23.820 466 238 12 114 509 94 512 3.09e-25 110
MS.gene015077.t1 MTR_6g061000 50.000 80 37 1 199 278 25 101 1.08e-17 79.0
MS.gene015077.t1 MTR_1g062330 24.507 355 160 14 144 433 386 697 1.26e-17 86.7
MS.gene015077.t1 MTR_2g084425 25.000 192 135 4 348 536 833 1018 5.20e-15 79.0
MS.gene015077.t1 MTR_2g084425 25.281 356 166 12 62 363 416 725 4.01e-13 72.8
MS.gene015077.t1 MTR_2g084425 34.586 133 48 4 144 269 495 595 2.79e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015077.t1 AT5G58610 35.729 501 266 11 67 542 314 783 1.00e-83 278
MS.gene015077.t1 AT5G58610 35.729 501 266 11 67 542 545 1014 1.85e-82 277
MS.gene015077.t1 AT5G58610 35.729 501 266 11 67 542 545 1014 1.85e-82 277
MS.gene015077.t1 AT5G58610 35.729 501 266 11 67 542 545 1014 2.65e-82 278
MS.gene015077.t1 AT5G58610 35.729 501 266 11 67 542 536 1005 3.44e-82 278
MS.gene015077.t1 AT5G58610 35.729 501 266 11 67 542 536 1005 3.70e-82 277
MS.gene015077.t1 AT5G58610 34.608 497 251 12 67 542 536 979 5.57e-75 257
MS.gene015077.t1 AT5G58610 34.608 497 251 12 67 542 536 979 8.52e-75 256
MS.gene015077.t1 AT5G58610 34.932 438 229 11 67 479 545 951 2.08e-66 232
MS.gene015077.t1 AT5G58610 34.932 438 229 11 67 479 536 942 2.30e-66 232
MS.gene015077.t1 AT5G36740 32.644 435 257 9 118 542 547 955 4.17e-65 230
MS.gene015077.t1 AT5G36740 32.644 435 257 9 118 542 547 955 4.17e-65 230
MS.gene015077.t1 AT5G36740 32.054 443 259 10 118 542 394 812 7.42e-62 220
MS.gene015077.t1 AT1G05380 32.273 440 265 9 106 539 516 928 7.54e-59 212
MS.gene015077.t1 AT1G05380 32.273 440 265 9 106 539 516 928 7.54e-59 212
MS.gene015077.t1 AT1G05380 32.273 440 265 9 106 539 516 928 7.54e-59 212
MS.gene015077.t1 AT3G14980 30.966 507 279 16 51 536 567 1023 1.05e-58 211
MS.gene015077.t1 AT3G14980 30.966 507 279 16 51 536 567 1023 1.05e-58 211
MS.gene015077.t1 AT3G14980 30.966 507 279 16 51 536 567 1023 1.05e-58 211
MS.gene015077.t1 AT3G14980 31.041 509 276 17 51 536 522 978 1.09e-58 211
MS.gene015077.t1 AT3G14980 30.966 507 279 16 51 536 567 1023 1.28e-58 211
MS.gene015077.t1 AT5G36670 28.647 569 339 15 6 542 436 969 5.82e-57 206
MS.gene015077.t1 AT5G36670 28.647 569 339 15 6 542 436 969 5.82e-57 206
MS.gene015077.t1 AT5G36740 30.675 489 290 13 6 478 436 891 5.86e-56 202
MS.gene015077.t1 AT5G36740 30.675 489 290 13 6 478 436 891 5.86e-56 202
MS.gene015077.t1 AT5G36670 30.675 489 290 13 6 478 436 891 5.86e-56 202
MS.gene015077.t1 AT5G58610 33.827 405 212 11 67 446 536 909 4.43e-54 197
MS.gene015077.t1 AT5G63900 36.562 320 169 9 223 539 255 543 5.57e-54 192
MS.gene015077.t1 AT5G36670 28.250 577 341 16 6 542 283 826 6.39e-54 197
MS.gene015077.t1 AT4G14920 28.492 537 304 17 14 536 513 983 8.19e-54 197
MS.gene015077.t1 AT4G14920 28.492 537 304 17 14 536 513 983 8.19e-54 197
MS.gene015077.t1 AT4G14920 28.492 537 304 17 14 536 513 983 8.51e-54 197
MS.gene015077.t1 AT5G36670 28.250 577 341 16 6 542 436 979 1.55e-53 196
MS.gene015077.t1 AT2G37520 27.483 433 227 14 144 525 410 806 3.40e-38 150
MS.gene015077.t1 AT3G53680 27.842 431 227 14 144 525 427 822 1.03e-37 149
MS.gene015077.t1 AT3G53680 27.842 431 227 14 144 525 429 824 1.20e-37 148
MS.gene015077.t1 AT3G14980 29.904 418 222 16 51 447 567 934 2.48e-37 147
MS.gene015077.t1 AT2G36720 24.138 464 244 11 144 541 557 978 4.33e-35 141
MS.gene015077.t1 AT2G36720 24.138 464 244 11 144 541 557 978 4.33e-35 141
MS.gene015077.t1 AT2G27980 25.957 470 236 13 144 543 637 1064 7.11e-31 128

Find 99 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATACTTTCTTTGAATTTC+AGG 0.141944 3.2:+85552120 MS.gene015077:CDS
ACATGTTCTGTTTGTTGTTT+TGG 0.157762 3.2:+85551236 MS.gene015077:CDS
AGATCATTCCCAAGCTTATT+TGG 0.196412 3.2:-85551608 None:intergenic
GTGGCAACCATAAGGATTTA+TGG 0.239122 3.2:+85551884 MS.gene015077:CDS
TGGTTTCTATACTGCGATTA+TGG 0.240807 3.2:+85551838 MS.gene015077:CDS
TGCAAATTCTTGTTTGCGTT+TGG 0.242204 3.2:-85551390 None:intergenic
ACCATCCAAAAGTATCTTCT+TGG 0.296021 3.2:+85551067 MS.gene015077:CDS
GTTGATAAAGGATGGAGTTT+TGG 0.297915 3.2:+85550899 MS.gene015077:CDS
GTCTTCCAAGAAGATACTTT+TGG 0.305890 3.2:-85551072 None:intergenic
ACAAGCATGAGCCTCAAATT+TGG 0.327395 3.2:-85551030 None:intergenic
TCGTTCCACTCTGATTGTTT+AGG 0.327474 3.2:+85551293 MS.gene015077:CDS
CTAAAGAGGGAAGGTATAAG+AGG 0.337184 3.2:+85550864 MS.gene015077:CDS
ACAAGAGATACTCCCTCTTT+TGG 0.339052 3.2:-85550964 None:intergenic
CGGAACTTCATTGTTGGACT+TGG 0.361651 3.2:+85551094 MS.gene015077:CDS
GTTTCTAAAGCCTCTAGTTC+CGG 0.368804 3.2:+85550717 MS.gene015077:CDS
GCAAATTCTTGTTTGCGTTT+GGG 0.380503 3.2:-85551389 None:intergenic
CAGACCATCCGGATCTCGTT+TGG 0.386226 3.2:-85551318 None:intergenic
CCAAGTGTCTATAGCATCCT+TGG 0.387385 3.2:-85552041 None:intergenic
GGAACGGATAAATCAACTTC+TGG 0.396861 3.2:+85550690 MS.gene015077:CDS
ACATGTTCCCACAAACTTCA+TGG 0.397494 3.2:-85551556 None:intergenic
ATTCACTCTCACCAAATTTG+AGG 0.418669 3.2:+85551019 MS.gene015077:CDS
TGTGTAAAGGCAACAAGAAT+TGG 0.422575 3.2:+85551473 MS.gene015077:CDS
CATAAGGATTTATGGTCAAA+AGG 0.428606 3.2:+85551892 MS.gene015077:CDS
CAAACGAGATCCGGATGGTC+TGG 0.433972 3.2:+85551319 MS.gene015077:CDS
AAGAAACGTTTGAACTTTCG+TGG 0.439001 3.2:+85551818 MS.gene015077:CDS
AGTTGATTAACTTAGGAGTT+GGG 0.439665 3.2:+85551999 MS.gene015077:CDS
GAGACACTTTCTTTGTTAAG+TGG 0.443344 3.2:-85552163 None:intergenic
AGACCATCCGGATCTCGTTT+GGG 0.445042 3.2:-85551317 None:intergenic
TTGTAATGCTGAAGCAAAAT+CGG 0.448060 3.2:+85551163 MS.gene015077:CDS
TTTAGGTCCCAAACGAGATC+CGG 0.450042 3.2:+85551310 MS.gene015077:CDS
ATGTGACTAGAAACTTCATT+TGG 0.453838 3.2:-85551500 None:intergenic
GGAAGACGGAACTTCATTGT+TGG 0.455884 3.2:+85551088 MS.gene015077:CDS
TCTGAGCTCAGCCAATCAAA+AGG 0.457877 3.2:+85551133 MS.gene015077:CDS
ATTGACAATGTTACCAAAAG+AGG 0.459673 3.2:+85550951 MS.gene015077:CDS
GAAGTGTTCTCAGTTGATAA+AGG 0.461389 3.2:+85550887 MS.gene015077:CDS
CGTAAATTGACTGTGGCTCT+TGG 0.463118 3.2:+85551707 MS.gene015077:CDS
GAGGAACAGTTGATTAACTT+AGG 0.464976 3.2:+85551992 MS.gene015077:CDS
GGTGTGCTGCGTGAGAGTTT+TGG 0.469338 3.2:+85551728 MS.gene015077:CDS
TGTTGTTGTTGTTCCTTCCT+CGG 0.473116 3.2:-85550607 None:intergenic
CTGAGCTCAGCCAATCAAAA+GGG 0.474959 3.2:+85551134 MS.gene015077:CDS
CTAGGAATACCAAATAAGCT+TGG 0.478097 3.2:+85551599 MS.gene015077:CDS
TATACTGCGATTATGGAGAA+AGG 0.478537 3.2:+85551845 MS.gene015077:CDS
CCGTTCCCTCAGATTCTCTC+AGG 0.480436 3.2:-85550674 None:intergenic
TAGGAATACCAAATAAGCTT+GGG 0.480908 3.2:+85551600 MS.gene015077:CDS
ATACTGCGATTATGGAGAAA+GGG 0.484197 3.2:+85551846 MS.gene015077:CDS
ATTTCACTTGGGGTGTGTAA+AGG 0.484386 3.2:+85551460 MS.gene015077:CDS
CAGTTGATTAACTTAGGAGT+TGG 0.492298 3.2:+85551998 MS.gene015077:CDS
TATAATGTGAGTTGTGATGA+TGG 0.496882 3.2:+85551650 MS.gene015077:CDS
AGCTCAGAGCTTTCATTCGA+CGG 0.500191 3.2:-85551118 None:intergenic
TAACTTAGGAGTTGGGAGCT+TGG 0.501005 3.2:+85552006 MS.gene015077:CDS
AGCTTGGGAATGATCTAACT+TGG 0.501787 3.2:+85551615 MS.gene015077:CDS
GGATAAATCAACTTCTGGTA+AGG 0.504650 3.2:+85550695 MS.gene015077:CDS
AAAGAGGGAAAGTACTAAAG+AGG 0.506275 3.2:+85550850 MS.gene015077:CDS
TGAGTTCTGTGGCAACCATA+AGG 0.512428 3.2:+85551876 MS.gene015077:CDS
CGGATGGTCTGGATGGTACA+TGG 0.516273 3.2:+85551330 MS.gene015077:CDS
AAGAGGGAAAGTACTAAAGA+GGG 0.517147 3.2:+85550851 MS.gene015077:CDS
AATGTGCCGTTTGTTGATGA+AGG 0.520351 3.2:+85551964 MS.gene015077:CDS
GTTTCTAATTCAGTGGGTAG+TGG 0.524886 3.2:+85550825 MS.gene015077:CDS
CCAAGGATGCTATAGACACT+TGG 0.526403 3.2:+85552041 MS.gene015077:CDS
TAAAGAGGGAAGGTATAAGA+GGG 0.542556 3.2:+85550865 MS.gene015077:CDS
CATGTACCATCCAGACCATC+CGG 0.542947 3.2:-85551329 None:intergenic
CAATCAGAGTGGAACGAAGA+AGG 0.546313 3.2:-85551287 None:intergenic
ATCAGAAGTTTCTAATTCAG+TGG 0.547714 3.2:+85550818 MS.gene015077:CDS
TCAGTGGGTAGTGGTAAAAG+AGG 0.549198 3.2:+85550834 MS.gene015077:CDS
ATGTGAACGAAAATTTCACT+TGG 0.549257 3.2:+85551448 MS.gene015077:CDS
TGTTCTCAGTTGATAAAGGA+TGG 0.550925 3.2:+85550891 MS.gene015077:CDS
CGAGATCCGGATGGTCTGGA+TGG 0.554408 3.2:+85551323 MS.gene015077:CDS
CAGTGGGTAGTGGTAAAAGA+GGG 0.562756 3.2:+85550835 MS.gene015077:CDS
CAAGCCCCTTCATCAACAAA+CGG 0.563396 3.2:-85551970 None:intergenic
AAAAGTATCTTCTTGGAAGA+CGG 0.564085 3.2:+85551074 MS.gene015077:CDS
TGTGAACGAAAATTTCACTT+GGG 0.566723 3.2:+85551449 MS.gene015077:CDS
AGATCGCCTGAGAGAATCTG+AGG 0.577144 3.2:+85550668 MS.gene015077:CDS
TCAGAAGTTTCTAATTCAGT+GGG 0.578275 3.2:+85550819 MS.gene015077:CDS
CCTGAGAGAATCTGAGGGAA+CGG 0.579608 3.2:+85550674 MS.gene015077:CDS
CTGATGAGGAGTTTCATCAA+AGG 0.590006 3.2:+85551681 MS.gene015077:CDS
GGTATCAAGATCAACTTCAA+AGG 0.591691 3.2:+85550767 MS.gene015077:CDS
ATGTGCCGTTTGTTGATGAA+GGG 0.591926 3.2:+85551965 MS.gene015077:CDS
TTTAACAGAACCGGAACTAG+AGG 0.594122 3.2:-85550727 None:intergenic
CGACAGAGAGAATCCGAGGA+AGG 0.596626 3.2:+85550594 MS.gene015077:CDS
TTATGTCTAGAGAAACTACT+AGG 0.598338 3.2:+85551581 MS.gene015077:CDS
AAAGCGACAGAGAGAATCCG+AGG 0.599141 3.2:+85550590 MS.gene015077:CDS
GGGAAAGTACTAAAGAGGGA+AGG 0.603607 3.2:+85550855 MS.gene015077:CDS
TACTGCGATTATGGAGAAAG+GGG 0.609394 3.2:+85551847 MS.gene015077:CDS
CATATTCTACAACAGCAACT+CGG 0.614325 3.2:-85551359 None:intergenic
TGTGCCGTTTGTTGATGAAG+GGG 0.619488 3.2:+85551966 MS.gene015077:CDS
TTGACAATGTTACCAAAAGA+GGG 0.620789 3.2:+85550952 MS.gene015077:CDS
AGTGTCTATAGCATCCTTGG+AGG 0.622116 3.2:-85552038 None:intergenic
TTTGTTGATGAAGGGGCTTG+AGG 0.622358 3.2:+85551973 MS.gene015077:CDS
GTGAACGAAAATTTCACTTG+GGG 0.624887 3.2:+85551450 MS.gene015077:CDS
AAATGAAGTTTCTAGTCACA+TGG 0.625461 3.2:+85551502 MS.gene015077:CDS
AGAGGGAGTATCTCTTGTGA+AGG 0.627844 3.2:+85550969 MS.gene015077:CDS
TGAGCTCAGCCAATCAAAAG+GGG 0.629047 3.2:+85551135 MS.gene015077:CDS
GGTGACTTAATATTATGTGA+TGG 0.647953 3.2:+85551260 MS.gene015077:CDS
GATCGCCTGAGAGAATCTGA+GGG 0.652065 3.2:+85550669 MS.gene015077:CDS
GGTCCCAAACGAGATCCGGA+TGG 0.671675 3.2:+85551314 MS.gene015077:CDS
TGGTAACATTGTCAATACCA+CGG 0.676702 3.2:-85550944 None:intergenic
ACTGCGATTATGGAGAAAGG+GGG 0.694924 3.2:+85551848 MS.gene015077:CDS
AAGGAAGCGTAAATTGACTG+TGG 0.704717 3.2:+85551700 MS.gene015077:CDS
TGGGACCTAAACAATCAGAG+TGG 0.741486 3.2:-85551298 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTATTGAAAAAAATAAT+TGG + chr3.2:85551528-85551547 MS.gene015077:CDS 10.0%
!!! ATCAAATCTTTTTTAGATAA+AGG - chr3.2:85551767-85551786 None:intergenic 15.0%
!! AAAAAAAAATATCGAAGACA+AGG + chr3.2:85551941-85551960 MS.gene015077:CDS 20.0%
!! TTATACTTTCTTTGAATTTC+AGG + chr3.2:85552120-85552139 MS.gene015077:CDS 20.0%
!!! TTGTCTTCGATATTTTTTTT+TGG - chr3.2:85551942-85551961 None:intergenic 20.0%
! TAAAAAAGCTACACTAACAA+CGG + chr3.2:85550746-85550765 MS.gene015077:CDS 25.0%
!!! TCTTCGATATTTTTTTTTGG+TGG - chr3.2:85551939-85551958 None:intergenic 25.0%
AGTTGATTAACTTAGGAGTT+GGG + chr3.2:85551999-85552018 MS.gene015077:CDS 30.0%
ATCAGAAGTTTCTAATTCAG+TGG + chr3.2:85550818-85550837 MS.gene015077:CDS 30.0%
ATGTGAACGAAAATTTCACT+TGG + chr3.2:85551448-85551467 MS.gene015077:CDS 30.0%
ATGTGACTAGAAACTTCATT+TGG - chr3.2:85551503-85551522 None:intergenic 30.0%
ATTGACAATGTTACCAAAAG+AGG + chr3.2:85550951-85550970 MS.gene015077:CDS 30.0%
CATAAGGATTTATGGTCAAA+AGG + chr3.2:85551892-85551911 MS.gene015077:CDS 30.0%
GGTGACTTAATATTATGTGA+TGG + chr3.2:85551260-85551279 MS.gene015077:CDS 30.0%
TAGGAATACCAAATAAGCTT+GGG + chr3.2:85551600-85551619 MS.gene015077:CDS 30.0%
TATAATGTGAGTTGTGATGA+TGG + chr3.2:85551650-85551669 MS.gene015077:CDS 30.0%
TCAGAAGTTTCTAATTCAGT+GGG + chr3.2:85550819-85550838 MS.gene015077:CDS 30.0%
TGTGAACGAAAATTTCACTT+GGG + chr3.2:85551449-85551468 MS.gene015077:CDS 30.0%
TTATGTCTAGAGAAACTACT+AGG + chr3.2:85551581-85551600 MS.gene015077:CDS 30.0%
TTGACAATGTTACCAAAAGA+GGG + chr3.2:85550952-85550971 MS.gene015077:CDS 30.0%
TTGTAATGCTGAAGCAAAAT+CGG + chr3.2:85551163-85551182 MS.gene015077:CDS 30.0%
! CTTTTGACCATAAATCCTTA+TGG - chr3.2:85551894-85551913 None:intergenic 30.0%
!! AAAAGTATCTTCTTGGAAGA+CGG + chr3.2:85551074-85551093 MS.gene015077:CDS 30.0%
!! AAATGAAGTTTCTAGTCACA+TGG + chr3.2:85551502-85551521 MS.gene015077:CDS 30.0%
!!! ACATGTTCTGTTTGTTGTTT+TGG + chr3.2:85551236-85551255 MS.gene015077:CDS 30.0%
!!! ATGTTCTGTTTGTTGTTTTG+GGG + chr3.2:85551238-85551257 MS.gene015077:CDS 30.0%
!!! CATGTTCTGTTTGTTGTTTT+GGG + chr3.2:85551237-85551256 MS.gene015077:CDS 30.0%
!!! TGTAGCTTTTTTAACAGAAC+CGG - chr3.2:85550739-85550758 None:intergenic 30.0%
AAGAAACGTTTGAACTTTCG+TGG + chr3.2:85551818-85551837 MS.gene015077:CDS 35.0%
AGATCATTCCCAAGCTTATT+TGG - chr3.2:85551611-85551630 None:intergenic 35.0%
ATACTGCGATTATGGAGAAA+GGG + chr3.2:85551846-85551865 MS.gene015077:CDS 35.0%
ATTCACTCTCACCAAATTTG+AGG + chr3.2:85551019-85551038 MS.gene015077:CDS 35.0%
CAGTTGATTAACTTAGGAGT+TGG + chr3.2:85551998-85552017 MS.gene015077:CDS 35.0%
CATATTCTACAACAGCAACT+CGG - chr3.2:85551362-85551381 None:intergenic 35.0%
CTAGGAATACCAAATAAGCT+TGG + chr3.2:85551599-85551618 MS.gene015077:CDS 35.0%
GAGACACTTTCTTTGTTAAG+TGG - chr3.2:85552166-85552185 None:intergenic 35.0%
GAGGAACAGTTGATTAACTT+AGG + chr3.2:85551992-85552011 MS.gene015077:CDS 35.0%
GGATAAATCAACTTCTGGTA+AGG + chr3.2:85550695-85550714 MS.gene015077:CDS 35.0%
GGTATCAAGATCAACTTCAA+AGG + chr3.2:85550767-85550786 MS.gene015077:CDS 35.0%
GTGAACGAAAATTTCACTTG+GGG + chr3.2:85551450-85551469 MS.gene015077:CDS 35.0%
TATACTGCGATTATGGAGAA+AGG + chr3.2:85551845-85551864 MS.gene015077:CDS 35.0%
TGGTAACATTGTCAATACCA+CGG - chr3.2:85550947-85550966 None:intergenic 35.0%
TGGTTTCTATACTGCGATTA+TGG + chr3.2:85551838-85551857 MS.gene015077:CDS 35.0%
TGTGTAAAGGCAACAAGAAT+TGG + chr3.2:85551473-85551492 MS.gene015077:CDS 35.0%
! ACAATCATTCCCCTTTTGAT+TGG - chr3.2:85551147-85551166 None:intergenic 35.0%
! GCAAATTCTTGTTTGCGTTT+GGG - chr3.2:85551392-85551411 None:intergenic 35.0%
! GTCTTCCAAGAAGATACTTT+TGG - chr3.2:85551075-85551094 None:intergenic 35.0%
! GTTCAAACGTTTCTTTTCAG+AGG - chr3.2:85551813-85551832 None:intergenic 35.0%
! TAAAGAGGGAAGGTATAAGA+GGG + chr3.2:85550865-85550884 MS.gene015077:CDS 35.0%
! TCCAAGAAGATACTTTTGGA+TGG - chr3.2:85551071-85551090 None:intergenic 35.0%
! TGCAAATTCTTGTTTGCGTT+TGG - chr3.2:85551393-85551412 None:intergenic 35.0%
!! AAAGAGGGAAAGTACTAAAG+AGG + chr3.2:85550850-85550869 MS.gene015077:CDS 35.0%
!! AAGAGGGAAAGTACTAAAGA+GGG + chr3.2:85550851-85550870 MS.gene015077:CDS 35.0%
!! ACCATCCAAAAGTATCTTCT+TGG + chr3.2:85551067-85551086 MS.gene015077:CDS 35.0%
!! GAAGTGTTCTCAGTTGATAA+AGG + chr3.2:85550887-85550906 MS.gene015077:CDS 35.0%
!! GTTGATAAAGGATGGAGTTT+TGG + chr3.2:85550899-85550918 MS.gene015077:CDS 35.0%
!! TGTTCTCAGTTGATAAAGGA+TGG + chr3.2:85550891-85550910 MS.gene015077:CDS 35.0%
!!! TGTTCTGTTTGTTGTTTTGG+GGG + chr3.2:85551239-85551258 MS.gene015077:CDS 35.0%
ACAAGCATGAGCCTCAAATT+TGG - chr3.2:85551033-85551052 None:intergenic 40.0%
ACATGTTCCCACAAACTTCA+TGG - chr3.2:85551559-85551578 None:intergenic 40.0%
AGCTTGGGAATGATCTAACT+TGG + chr3.2:85551615-85551634 MS.gene015077:CDS 40.0%
ATTTCACTTGGGGTGTGTAA+AGG + chr3.2:85551460-85551479 MS.gene015077:CDS 40.0%
CTGATGAGGAGTTTCATCAA+AGG + chr3.2:85551681-85551700 MS.gene015077:CDS 40.0%
GGAACGGATAAATCAACTTC+TGG + chr3.2:85550690-85550709 MS.gene015077:CDS 40.0%
GTGGCAACCATAAGGATTTA+TGG + chr3.2:85551884-85551903 MS.gene015077:CDS 40.0%
GTTTCTAATTCAGTGGGTAG+TGG + chr3.2:85550825-85550844 MS.gene015077:CDS 40.0%
TACTGCGATTATGGAGAAAG+GGG + chr3.2:85551847-85551866 MS.gene015077:CDS 40.0%
TCGTTCCACTCTGATTGTTT+AGG + chr3.2:85551293-85551312 MS.gene015077:CDS 40.0%
TTTAACAGAACCGGAACTAG+AGG - chr3.2:85550730-85550749 None:intergenic 40.0%
! AAGGAAGCGTAAATTGACTG+TGG + chr3.2:85551700-85551719 MS.gene015077:CDS 40.0%
! ACAAGAGATACTCCCTCTTT+TGG - chr3.2:85550967-85550986 None:intergenic 40.0%
! CTAAAGAGGGAAGGTATAAG+AGG + chr3.2:85550864-85550883 MS.gene015077:CDS 40.0%
! GGTTGCTGAGATTGTTTTCA+TGG + chr3.2:85551913-85551932 MS.gene015077:CDS 40.0%
! GGTTTTGCCATGAAGTTTGT+GGG + chr3.2:85551549-85551568 MS.gene015077:CDS 40.0%
! TGATGGAGATTTTGCTGATG+AGG + chr3.2:85551667-85551686 MS.gene015077:CDS 40.0%
! TGTTGTTGTTGTTCCTTCCT+CGG - chr3.2:85550610-85550629 None:intergenic 40.0%
!! AATGTGCCGTTTGTTGATGA+AGG + chr3.2:85551964-85551983 MS.gene015077:CDS 40.0%
!! AGGCGATCTTTTGACTGTAA+TGG - chr3.2:85550657-85550676 None:intergenic 40.0%
!! ATGTGCCGTTTGTTGATGAA+GGG + chr3.2:85551965-85551984 MS.gene015077:CDS 40.0%
!! GTTTCTAAAGCCTCTAGTTC+CGG + chr3.2:85550717-85550736 MS.gene015077:CDS 40.0%
!! TGGTTTTGCCATGAAGTTTG+TGG + chr3.2:85551548-85551567 MS.gene015077:CDS 40.0%
!!! AAGGATGGAGTTTTGGTTTC+TGG + chr3.2:85550906-85550925 MS.gene015077:CDS 40.0%
!!! AGGATGGAGTTTTGGTTTCT+GGG + chr3.2:85550907-85550926 MS.gene015077:CDS 40.0%
ACTGCGATTATGGAGAAAGG+GGG + chr3.2:85551848-85551867 MS.gene015077:CDS 45.0%
AGCTCAGAGCTTTCATTCGA+CGG - chr3.2:85551121-85551140 None:intergenic 45.0%
AGTGTCTATAGCATCCTTGG+AGG - chr3.2:85552041-85552060 None:intergenic 45.0%
CAAGCCCCTTCATCAACAAA+CGG - chr3.2:85551973-85551992 None:intergenic 45.0%
CAATCAGAGTGGAACGAAGA+AGG - chr3.2:85551290-85551309 None:intergenic 45.0%
CCAAGGATGCTATAGACACT+TGG + chr3.2:85552041-85552060 MS.gene015077:CDS 45.0%
CCAAGTGTCTATAGCATCCT+TGG - chr3.2:85552044-85552063 None:intergenic 45.0%
CGGAACTTCATTGTTGGACT+TGG + chr3.2:85551094-85551113 MS.gene015077:CDS 45.0%
CGTAAATTGACTGTGGCTCT+TGG + chr3.2:85551707-85551726 MS.gene015077:CDS 45.0%
CTGAGCTCAGCCAATCAAAA+GGG + chr3.2:85551134-85551153 MS.gene015077:CDS 45.0%
GGAAGACGGAACTTCATTGT+TGG + chr3.2:85551088-85551107 MS.gene015077:CDS 45.0%
TAACTTAGGAGTTGGGAGCT+TGG + chr3.2:85552006-85552025 MS.gene015077:CDS 45.0%
TCTGAGCTCAGCCAATCAAA+AGG + chr3.2:85551133-85551152 MS.gene015077:CDS 45.0%
TGAGCTCAGCCAATCAAAAG+GGG + chr3.2:85551135-85551154 MS.gene015077:CDS 45.0%
TGAGTTCTGTGGCAACCATA+AGG + chr3.2:85551876-85551895 MS.gene015077:CDS 45.0%
TGGGACCTAAACAATCAGAG+TGG - chr3.2:85551301-85551320 None:intergenic 45.0%
TTTAGGTCCCAAACGAGATC+CGG + chr3.2:85551310-85551329 MS.gene015077:CDS 45.0%
! CAGTGGGTAGTGGTAAAAGA+GGG + chr3.2:85550835-85550854 MS.gene015077:CDS 45.0%
! TCAGTGGGTAGTGGTAAAAG+AGG + chr3.2:85550834-85550853 MS.gene015077:CDS 45.0%
! TTTGTTGATGAAGGGGCTTG+AGG + chr3.2:85551973-85551992 MS.gene015077:CDS 45.0%
!! AGAGGGAGTATCTCTTGTGA+AGG + chr3.2:85550969-85550988 MS.gene015077:CDS 45.0%
!! GGGAAAGTACTAAAGAGGGA+AGG + chr3.2:85550855-85550874 MS.gene015077:CDS 45.0%
!! TGTGCCGTTTGTTGATGAAG+GGG + chr3.2:85551966-85551985 MS.gene015077:CDS 45.0%
!!! CTTGGTTTTGCATTCCTCCA+AGG + chr3.2:85552024-85552043 MS.gene015077:CDS 45.0%
AAAGCGACAGAGAGAATCCG+AGG + chr3.2:85550590-85550609 MS.gene015077:CDS 50.0%
AGACCATCCGGATCTCGTTT+GGG - chr3.2:85551320-85551339 None:intergenic 50.0%
AGATCGCCTGAGAGAATCTG+AGG + chr3.2:85550668-85550687 MS.gene015077:CDS 50.0%
AGGGGGTAAAGTGAGTTCTG+TGG + chr3.2:85551865-85551884 MS.gene015077:CDS 50.0%
CATGTACCATCCAGACCATC+CGG - chr3.2:85551332-85551351 None:intergenic 50.0%
CCTGAGAGAATCTGAGGGAA+CGG + chr3.2:85550674-85550693 MS.gene015077:CDS 50.0%
GATCGCCTGAGAGAATCTGA+GGG + chr3.2:85550669-85550688 MS.gene015077:CDS 50.0%
! GGGACTATTGTTTTCTGCCG+TGG + chr3.2:85550927-85550946 MS.gene015077:CDS 50.0%
CAAACGAGATCCGGATGGTC+TGG + chr3.2:85551319-85551338 MS.gene015077:CDS 55.0%
CAGACCATCCGGATCTCGTT+TGG - chr3.2:85551321-85551340 None:intergenic 55.0%
CCGTTCCCTCAGATTCTCTC+AGG - chr3.2:85550677-85550696 None:intergenic 55.0%
CGACAGAGAGAATCCGAGGA+AGG + chr3.2:85550594-85550613 MS.gene015077:CDS 55.0%
CGGATGGTCTGGATGGTACA+TGG + chr3.2:85551330-85551349 MS.gene015077:CDS 55.0%
! GGTGTGCTGCGTGAGAGTTT+TGG + chr3.2:85551728-85551747 MS.gene015077:CDS 55.0%
CGAGATCCGGATGGTCTGGA+TGG + chr3.2:85551323-85551342 MS.gene015077:CDS 60.0%
GGTCCCAAACGAGATCCGGA+TGG + chr3.2:85551314-85551333 MS.gene015077:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 85550561 85552195 85550561 ID=MS.gene015077
chr3.2 mRNA 85550561 85552195 85550561 ID=MS.gene015077.t1;Parent=MS.gene015077
chr3.2 exon 85550561 85552195 85550561 ID=MS.gene015077.t1.exon1;Parent=MS.gene015077.t1
chr3.2 CDS 85550561 85552195 85550561 ID=cds.MS.gene015077.t1;Parent=MS.gene015077.t1
Gene Sequence

>MS.gene015077

ATGACTTCTCTGTCTACATTACAGTCAAAAAAGCGACAGAGAGAATCCGAGGAAGGAACAACAACAACAACAACAACAACAATTTCTTCATCTCCATTACAGTCAAAAGATCGCCTGAGAGAATCTGAGGGAACGGATAAATCAACTTCTGGTAAGGTTTCTAAAGCCTCTAGTTCCGGTTCTGTTAAAAAAGCTACACTAACAACGGTATCAAGATCAACTTCAAAGGAAAATGAGAAACATGTGAGTCAATCTGAATCAGAAGTTTCTAATTCAGTGGGTAGTGGTAAAAGAGGGAAAGTACTAAAGAGGGAAGGTATAAGAGGGAAGTGTTCTCAGTTGATAAAGGATGGAGTTTTGGTTTCTGGGACTATTGTTTTCTGCCGTGGTATTGACAATGTTACCAAAAGAGGGAGTATCTCTTGTGAAGGTATAGCTTGTGATTGTTGTCATGTTAAATTCACTCTCACCAAATTTGAGGCTCATGCTTGTTGTACAAGACGTAGACCATCCAAAAGTATCTTCTTGGAAGACGGAACTTCATTGTTGGACTTGGACCGTCGAATGAAAGCTCTGAGCTCAGCCAATCAAAAGGGGAATGATTGTAATGCTGAAGCAAAATCGGAAGCAGCGAATAGTTGTGTTGCTGAAGAAAAGTCTCATGAAAATAATGATACATGTTCTGTTTGTTGTTTTGGGGGTGACTTAATATTATGTGATGGATGTCCTTCTTCGTTCCACTCTGATTGTTTAGGTCCCAAACGAGATCCGGATGGTCTGGATGGTACATGGTTATGTCCGAGTTGCTGTTGTAGAATATGTTGTCAACCCAAACGCAAACAAGAATTTGCAAATGATATTGATGACGATATTCTTGCTTGTGTTCAATGTGAACGAAAATTTCACTTGGGGTGTGTAAAGGCAACAAGAATTGGACAACCAAATGAAGTTTCTAGTCACATGGACAACATTATTGAAAAAAATAATTGGTTTTGCCATGAAGTTTGTGGGAACATGTTCTTATGTCTAGAGAAACTACTAGGAATACCAAATAAGCTTGGGAATGATCTAACTTGGACATTGTTGAAGTATAATGTGAGTTGTGATGATGGAGATTTTGCTGATGAGGAGTTTCATCAAAGGAAGCGTAAATTGACTGTGGCTCTTGGTGTGCTGCGTGAGAGTTTTGGTGAAACTATTGATCCTTTATCTAAAAAAGATTTGATTGAAGATGTTGTGTTTAGTAGATCCTCTGAAAAGAAACGTTTGAACTTTCGTGGTTTCTATACTGCGATTATGGAGAAAGGGGGTAAAGTGAGTTCTGTGGCAACCATAAGGATTTATGGTCAAAAGGTTGCTGAGATTGTTTTCATGGCCACCAAAAAAAAATATCGAAGACAAGGAATGTGCCGTTTGTTGATGAAGGGGCTTGAGGAACAGTTGATTAACTTAGGAGTTGGGAGCTTGGTTTTGCATTCCTCCAAGGATGCTATAGACACTTGGAAAAAATCATTTCATTTTGTTGAGATGACGAATGAAGACAAGTGTAAATTTGTTCATTATACTTTCTTTGAATTTCAGGACACTATCATGTGTCTTAAGCCACTTAACAAAGAAAGTGTCTCAAGTCACTGA
Protein sequence

>MS.gene015077.t1

MTSLSTLQSKKRQRESEEGTTTTTTTTISSSPLQSKDRLRESEGTDKSTSGKVSKASSSGSVKKATLTTVSRSTSKENEKHVSQSESEVSNSVGSGKRGKVLKREGIRGKCSQLIKDGVLVSGTIVFCRGIDNVTKRGSISCEGIACDCCHVKFTLTKFEAHACCTRRRPSKSIFLEDGTSLLDLDRRMKALSSANQKGNDCNAEAKSEAANSCVAEEKSHENNDTCSVCCFGGDLILCDGCPSSFHSDCLGPKRDPDGLDGTWLCPSCCCRICCQPKRKQEFANDIDDDILACVQCERKFHLGCVKATRIGQPNEVSSHMDNIIEKNNWFCHEVCGNMFLCLEKLLGIPNKLGNDLTWTLLKYNVSCDDGDFADEEFHQRKRKLTVALGVLRESFGETIDPLSKKDLIEDVVFSRSSEKKRLNFRGFYTAIMEKGGKVSSVATIRIYGQKVAEIVFMATKKKYRRQGMCRLLMKGLEEQLINLGVGSLVLHSSKDAIDTWKKSFHFVEMTNEDKCKFVHYTFFEFQDTIMCLKPLNKESVSSH