AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015088.t1 MTR_3g103030 89.441 322 27 2 1 316 1 321 0.0 596
MS.gene015088.t1 MTR_1g018090 49.862 363 103 11 1 298 1 349 1.00e-85 262
MS.gene015088.t1 MTR_1g018090 46.061 330 99 11 1 265 1 316 3.60e-60 195
MS.gene015088.t1 MTR_5g005110 40.361 332 149 14 1 307 1 308 4.67e-55 182
MS.gene015088.t1 MTR_1g106460 51.445 173 63 4 147 308 161 323 1.02e-46 160
MS.gene015088.t1 MTR_1g106470 78.161 87 19 0 222 308 195 281 2.56e-43 150
MS.gene015088.t1 MTR_1g106480 47.712 153 45 4 187 308 3 151 5.02e-33 119
MS.gene015088.t1 MTR_5g005110 33.798 287 141 14 1 262 1 263 1.41e-23 97.8
MS.gene015088.t1 MTR_5g079500 58.571 70 29 0 222 291 217 286 1.99e-22 95.5
MS.gene015088.t1 MTR_4g131160 52.632 76 36 0 222 297 195 270 2.71e-18 85.1
MS.gene015088.t1 MTR_4g131160 52.632 76 36 0 222 297 198 273 3.15e-18 84.7
MS.gene015088.t1 MTR_8g093500 60.606 66 25 1 222 287 114 178 1.79e-17 81.3
MS.gene015088.t1 MTR_1g080890 46.341 82 44 0 222 303 192 273 5.18e-16 78.2
MS.gene015088.t1 MTR_3g101810 53.968 63 29 0 223 285 171 233 9.73e-16 76.3
MS.gene015088.t1 MTR_7g069590 54.545 55 25 0 230 284 33 87 1.01e-14 70.9
MS.gene015088.t1 MTR_1g106460 38.889 126 56 4 147 261 161 276 5.20e-14 71.2
MS.gene015088.t1 MTR_1g019240 34.167 120 73 2 181 300 49 162 1.34e-13 70.1
MS.gene015088.t1 MTR_1g106470 74.419 43 11 0 222 264 195 237 1.43e-13 69.7
MS.gene015088.t1 MTR_1g084980 45.455 66 36 0 221 286 460 525 4.55e-13 70.1
MS.gene015088.t1 MTR_4g033295 53.030 66 30 1 222 286 117 182 1.24e-12 65.9
MS.gene015088.t1 MTR_4g033295 50.746 67 32 1 222 287 117 183 1.34e-12 65.9
MS.gene015088.t1 MTR_8g062240 31.847 157 88 5 139 286 69 215 4.00e-12 65.9
MS.gene015088.t1 MTR_4g065870 39.823 113 66 2 175 286 308 419 5.69e-12 66.6
MS.gene015088.t1 MTR_1g069155 43.939 66 37 0 221 286 315 380 6.23e-12 66.6
MS.gene015088.t1 MTR_7g099540 36.458 96 56 1 191 286 225 315 8.26e-12 65.9
MS.gene015088.t1 MTR_3g449770 30.822 146 89 2 154 292 233 373 8.81e-12 65.9
MS.gene015088.t1 MTR_1g052470 54.545 66 29 1 222 286 297 362 1.40e-11 65.1
MS.gene015088.t1 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.44e-11 65.5
MS.gene015088.t1 MTR_7g053410 30.526 190 116 5 98 286 207 381 1.45e-11 65.5
MS.gene015088.t1 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.89e-11 65.1
MS.gene015088.t1 MTR_8g012290 53.125 64 29 1 224 286 292 355 1.95e-11 65.1
MS.gene015088.t1 MTR_5g017040 42.188 64 37 0 236 299 118 181 2.04e-11 64.3
MS.gene015088.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.37e-11 64.7
MS.gene015088.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.38e-11 64.7
MS.gene015088.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.71e-11 64.3
MS.gene015088.t1 MTR_1g017350 51.562 64 30 1 224 286 261 324 2.85e-11 64.3
MS.gene015088.t1 MTR_7g110810 46.269 67 34 1 220 286 201 265 3.08e-11 63.9
MS.gene015088.t1 MTR_5g037250 44.565 92 42 3 201 286 88 176 3.47e-11 62.8
MS.gene015088.t1 MTR_4g065870 39.091 110 65 2 175 283 308 416 5.23e-11 63.5
MS.gene015088.t1 MTR_4g070320 51.562 64 30 1 224 286 144 207 5.44e-11 63.2
MS.gene015088.t1 MTR_2g098310 50.000 66 32 1 222 286 331 396 5.67e-11 63.2
MS.gene015088.t1 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.72e-11 62.8
MS.gene015088.t1 MTR_3g116770 51.562 64 30 1 224 286 192 255 8.83e-11 62.8
MS.gene015088.t1 MTR_3g498825 53.125 64 29 1 224 286 148 211 8.87e-11 62.4
MS.gene015088.t1 MTR_5g048860 51.562 64 30 1 224 286 366 429 9.67e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015088.t1 AT2G14760 50.230 217 74 6 109 307 121 321 3.10e-56 185
MS.gene015088.t1 AT4G33880 59.119 159 62 1 150 305 190 348 1.06e-54 182
MS.gene015088.t1 AT1G27740 61.486 148 40 3 162 308 121 252 3.48e-53 175
MS.gene015088.t1 AT2G14760 47.391 230 74 7 109 307 121 334 1.23e-52 176
MS.gene015088.t1 AT5G43175 57.931 145 52 3 165 308 81 217 9.38e-46 155
MS.gene015088.t1 AT5G37800 61.039 77 29 1 216 291 193 269 1.28e-23 99.0
MS.gene015088.t1 AT1G66470 52.809 89 42 0 203 291 175 263 2.41e-23 97.8
MS.gene015088.t1 AT2G24260 51.613 93 43 1 207 297 17 109 1.23e-21 92.0
MS.gene015088.t1 AT4G30980 47.573 103 47 2 189 290 101 197 3.32e-21 92.4
MS.gene015088.t1 AT4G30980 47.573 103 47 2 189 290 149 245 4.21e-21 92.8
MS.gene015088.t1 AT2G24260 51.613 93 43 1 207 297 120 212 6.96e-21 92.0
MS.gene015088.t1 AT5G58010 48.352 91 43 2 222 308 98 188 9.72e-19 85.1
MS.gene015088.t1 AT3G21330 52.381 63 30 0 223 285 269 331 2.66e-15 76.3
MS.gene015088.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.03e-14 73.2
MS.gene015088.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.03e-14 73.2
MS.gene015088.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.08e-14 73.6
MS.gene015088.t1 AT5G50915 35.196 179 76 7 170 314 57 229 1.08e-14 73.6
MS.gene015088.t1 AT5G01305 49.180 61 31 0 222 282 36 96 1.37e-14 70.9
MS.gene015088.t1 AT4G00120 50.000 54 27 0 232 285 121 174 3.39e-14 70.5
MS.gene015088.t1 AT1G25330 50.617 81 39 1 224 303 105 185 4.68e-13 67.8
MS.gene015088.t1 AT1G09530 37.895 95 53 1 201 295 321 409 6.28e-13 69.7
MS.gene015088.t1 AT1G09530 37.895 95 53 1 201 295 321 409 6.28e-13 69.7
MS.gene015088.t1 AT1G09530 37.895 95 53 1 201 295 321 409 6.28e-13 69.7
MS.gene015088.t1 AT1G09530 37.895 95 53 1 201 295 321 409 6.28e-13 69.7
MS.gene015088.t1 AT1G09530 37.895 95 53 1 201 295 321 409 6.28e-13 69.7
MS.gene015088.t1 AT1G09530 37.895 95 53 1 201 295 321 409 6.28e-13 69.7
MS.gene015088.t1 AT4G00050 39.423 104 51 3 183 286 77 168 1.10e-12 67.8
MS.gene015088.t1 AT1G51140 53.846 65 29 1 222 285 303 367 1.13e-12 68.6
MS.gene015088.t1 AT1G18400 54.688 64 28 1 224 286 146 209 1.66e-12 66.6
MS.gene015088.t1 AT5G67110 41.000 100 45 3 219 316 81 168 1.93e-12 65.9
MS.gene015088.t1 AT1G18400 54.688 64 28 1 224 286 146 209 2.28e-12 66.6
MS.gene015088.t1 AT4G00050 39.423 104 51 3 183 286 179 270 2.55e-12 67.4
MS.gene015088.t1 AT4G00050 39.423 104 51 3 183 286 179 270 2.60e-12 67.4
MS.gene015088.t1 AT4G09180 48.529 68 34 1 222 288 183 250 4.85e-12 65.5
MS.gene015088.t1 AT1G35460 50.000 66 32 1 222 286 180 245 8.32e-12 64.7
MS.gene015088.t1 AT4G28790 45.946 74 39 1 227 300 275 347 1.24e-11 65.5
MS.gene015088.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.29e-11 65.5
MS.gene015088.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.29e-11 65.5
MS.gene015088.t1 AT2G20180 37.363 91 52 1 196 286 185 270 1.29e-11 65.5
MS.gene015088.t1 AT1G73830 51.562 64 30 1 224 286 148 211 1.29e-11 64.3
MS.gene015088.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.32e-11 65.5
MS.gene015088.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.32e-11 65.5
MS.gene015088.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.32e-11 65.5
MS.gene015088.t1 AT2G20180 37.363 91 52 1 196 286 256 341 1.32e-11 65.5
MS.gene015088.t1 AT4G28815 38.776 98 55 2 206 298 47 144 1.35e-11 63.9
MS.gene015088.t1 AT1G73830 51.562 64 30 1 224 286 148 211 1.37e-11 64.3
MS.gene015088.t1 AT4G36930 36.047 86 54 1 230 315 198 282 1.53e-11 65.1
MS.gene015088.t1 AT2G46970 31.356 118 75 2 195 307 165 281 1.72e-11 64.7
MS.gene015088.t1 AT2G46970 31.356 118 75 2 195 307 174 290 1.76e-11 64.7
MS.gene015088.t1 AT2G46970 31.356 118 75 2 195 307 196 312 1.78e-11 65.1
MS.gene015088.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.05e-11 64.3
MS.gene015088.t1 AT4G28815 38.776 98 55 2 206 298 123 220 2.12e-11 64.3
MS.gene015088.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.21e-11 64.3
MS.gene015088.t1 AT1G68920 32.237 152 101 2 136 286 216 366 2.56e-11 64.7
MS.gene015088.t1 AT2G18300 36.434 129 73 3 159 286 129 249 2.82e-11 64.3
MS.gene015088.t1 AT3G07340 53.125 64 29 1 224 286 259 322 3.08e-11 64.3
MS.gene015088.t1 AT3G07340 53.125 64 29 1 224 286 259 322 3.37e-11 64.3
MS.gene015088.t1 AT2G42280 52.308 65 30 1 222 285 278 342 3.86e-11 63.5
MS.gene015088.t1 AT1G26260 53.125 64 29 1 224 286 173 236 4.03e-11 63.5
MS.gene015088.t1 AT5G48560 53.125 64 29 1 224 286 302 365 4.22e-11 63.9
MS.gene015088.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene015088.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene015088.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene015088.t1 AT1G26260 53.125 64 29 1 224 286 224 287 4.35e-11 63.5
MS.gene015088.t1 AT1G26260 53.125 64 29 1 224 286 202 265 4.53e-11 63.5
MS.gene015088.t1 AT5G48560 53.125 64 29 1 224 286 302 365 4.55e-11 63.9
MS.gene015088.t1 AT1G59640 50.000 64 31 1 224 286 137 200 5.25e-11 62.4
MS.gene015088.t1 AT1G10120 51.562 64 30 1 224 286 207 270 5.26e-11 63.2
MS.gene015088.t1 AT1G10120 51.562 64 30 1 224 286 207 270 5.26e-11 63.2
MS.gene015088.t1 AT2G20180 37.079 89 51 1 196 284 256 339 6.67e-11 62.8
MS.gene015088.t1 AT4G34530 51.562 64 30 1 224 286 173 236 7.91e-11 62.8
MS.gene015088.t1 AT3G23690 50.000 64 31 1 224 286 192 255 9.72e-11 62.4

Find 55 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACCTTCTTGCTCTTCT+TGG 0.125181 3.2:-85416656 None:intergenic
GCTTGATGTGCCAGAATTTC+AGG 0.228928 3.2:+85416366 MS.gene015088:CDS
GCTGCAGAAATTTCACATAT+TGG 0.264015 3.2:-85417302 None:intergenic
ACTCATATATTACCTTGATT+TGG 0.291701 3.2:-85417326 None:intergenic
TCTACATGCACCTGAAATTC+TGG 0.295024 3.2:-85416376 None:intergenic
TAAATTACCTTTGTCCCATT+TGG 0.321779 3.2:-85417156 None:intergenic
TATGCGCCAATTGCTTATAA+TGG 0.346115 3.2:+85417486 MS.gene015088:CDS
CTTCTGCTTGGAGAAAATAA+TGG 0.350452 3.2:+85416103 MS.gene015088:CDS
CTACAAAATCTTGTACCAAA+TGG 0.385534 3.2:+85417141 MS.gene015088:CDS
CATTCCCATTCGCCATCATC+AGG 0.393250 3.2:-85416013 None:intergenic
ACCCTTGCATAGAGGCTTTG+AGG 0.393741 3.2:-85416862 None:intergenic
TACAAAATCTTGTACCAAAT+GGG 0.416760 3.2:+85417142 MS.gene015088:CDS
GGAGAAAATAATGGGAACTT+TGG 0.422902 3.2:+85416112 MS.gene015088:CDS
GAAGCCAATGCAAGTGTAGA+TGG 0.429354 3.2:+85416700 MS.gene015088:CDS
TTCTGCTTGGAGAAAATAAT+GGG 0.435352 3.2:+85416104 MS.gene015088:CDS
ACATTGGATTCAATCTCAAC+AGG 0.435704 3.2:+85417514 MS.gene015088:CDS
TCAAGTCCATTATAAGCAAT+TGG 0.441871 3.2:-85417492 None:intergenic
AACCTAAGTTGAAGCTGAAA+AGG 0.448825 3.2:+85416341 MS.gene015088:CDS
TTGCTCCCCTTCTGAAGCTG+AGG 0.486357 3.2:+85416150 MS.gene015088:CDS
TTCCTCTGAGGTATAACCAC+TGG 0.491898 3.2:-85416731 None:intergenic
GATCAAACCTCGCTTCTGCT+TGG 0.495958 3.2:+85416091 MS.gene015088:CDS
GCTTATAATGGACTTGACAT+TGG 0.507048 3.2:+85417498 MS.gene015088:CDS
ATTTCTGCAGCTCCAAATCA+AGG 0.513225 3.2:+85417314 MS.gene015088:CDS
TATCCCTGATGATGGCGAAT+GGG 0.522217 3.2:+85416009 MS.gene015088:CDS
ATCCTCAAAGCCTCTATGCA+AGG 0.540493 3.2:+85416860 MS.gene015088:CDS
ATGTTTCCCTCAGCTTCAGA+AGG 0.542520 3.2:-85416157 None:intergenic
CTTGGAGCTATCCCTGATGA+TGG 0.545545 3.2:+85416001 MS.gene015088:CDS
TGCTCCCCTTCTGAAGCTGA+GGG 0.548801 3.2:+85416151 MS.gene015088:CDS
AAGATAAGATAAACTCATGT+GGG 0.556515 3.2:+85416398 MS.gene015088:CDS
ACTGTGTCTCTCAACTCCAA+TGG 0.558276 3.2:+85416805 MS.gene015088:CDS
GAAAGTAATCATAATACTCA+AGG 0.561375 3.2:+85416232 MS.gene015088:CDS
ATGTCCATCTACACTTGCAT+TGG 0.565311 3.2:-85416704 None:intergenic
TGATAATTACCCTTGCATAG+AGG 0.574539 3.2:-85416870 None:intergenic
TGTTTCCCTCAGCTTCAGAA+GGG 0.575825 3.2:-85416156 None:intergenic
CTATCCCTGATGATGGCGAA+TGG 0.588808 3.2:+85416008 MS.gene015088:CDS
GAAGATAAGATAAACTCATG+TGG 0.590178 3.2:+85416397 MS.gene015088:CDS
ATTGTGGTGGAGAGTCATCA+TGG 0.590276 3.2:-85416063 None:intergenic
TCCTCAAAGCCTCTATGCAA+GGG 0.593714 3.2:+85416861 MS.gene015088:CDS
TTCAGAAGGGGAGCAAAACA+TGG 0.599755 3.2:-85416143 None:intergenic
TCTTGTACCAAATGGGACAA+AGG 0.600952 3.2:+85417149 MS.gene015088:CDS
GGTTGATAGAAATGAGAACA+AGG 0.615117 3.2:+85416672 MS.gene015088:CDS
GTTTCCCTCAGCTTCAGAAG+GGG 0.626059 3.2:-85416155 None:intergenic
GGAAAGAAAAGAGCTAGTAG+AGG 0.626774 3.2:+85416826 MS.gene015088:CDS
TTCTAAGCTCTGATGATCTG+TGG 0.632585 3.2:+85417460 MS.gene015088:CDS
GAGGTTTGATCAAGTAATTG+TGG 0.634212 3.2:-85416079 None:intergenic
AGAGTCCAAGAAGAGCAAGA+AGG 0.635660 3.2:+85416651 MS.gene015088:CDS
GTTTGATCAAGTAATTGTGG+TGG 0.639569 3.2:-85416076 None:intergenic
ATTCCCATTCGCCATCATCA+GGG 0.639610 3.2:-85416012 None:intergenic
CTTCAGTTGCAAATATTCTG+CGG 0.648235 3.2:-85416039 None:intergenic
CTCTGAGGTATAACCACTGG+AGG 0.652022 3.2:-85416728 None:intergenic
CTCCAGTGGTTATACCTCAG+AGG 0.674227 3.2:+85416729 MS.gene015088:CDS
AGAGGAACAAAACATGTGTG+AGG 0.675741 3.2:+85416747 MS.gene015088:CDS
GTAGATGGACATACCTCCAG+TGG 0.708485 3.2:+85416715 MS.gene015088:CDS
ATGTGTGAGGAAAACAGTGG+AGG 0.712518 3.2:+85416760 MS.gene015088:CDS
AACATGTGTGAGGAAAACAG+TGG 0.790408 3.2:+85416757 MS.gene015088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATGATTTGAAATTTTG+TGG + chr3.2:85416592-85416611 MS.gene015088:intron 15.0%
!! ATCATTATTGCTAATTAAAG+TGG - chr3.2:85416581-85416600 None:intergenic 20.0%
!! ATTTCTGTTTAGAAATATCA+AGG + chr3.2:85417375-85417394 MS.gene015088:intron 20.0%
!! GAGATGTATAATTTGATATA+TGG + chr3.2:85417233-85417252 MS.gene015088:intron 20.0%
!! TGTATAATTTGATATATGGA+TGG + chr3.2:85417237-85417256 MS.gene015088:intron 20.0%
!!! ATGAATGTTTTGCATTTTAA+AGG + chr3.2:85417186-85417205 MS.gene015088:intron 20.0%
!!! TGAATGTTTTGCATTTTAAA+GGG + chr3.2:85417187-85417206 MS.gene015088:intron 20.0%
!!! TTGAATTTTACAGAAAAGAA+GGG + chr3.2:85417092-85417111 MS.gene015088:intron 20.0%
!!! TTTGAATTTTACAGAAAAGA+AGG + chr3.2:85417091-85417110 MS.gene015088:intron 20.0%
! AAGAGGAATAGTAAAACAAA+AGG - chr3.2:85416914-85416933 None:intergenic 25.0%
! AAGATAAGATAAACTCATGT+GGG + chr3.2:85416398-85416417 MS.gene015088:CDS 25.0%
! ACTCATATATTACCTTGATT+TGG - chr3.2:85417329-85417348 None:intergenic 25.0%
! GAAAGTAATCATAATACTCA+AGG + chr3.2:85416232-85416251 MS.gene015088:CDS 25.0%
! TAATAAATTTGTCAGCTTAG+CGG + chr3.2:85416504-85416523 MS.gene015088:intron 25.0%
! TACAAAATCTTGTACCAAAT+GGG + chr3.2:85417142-85417161 MS.gene015088:CDS 25.0%
!! TTGACATTTTGTAATCTCAA+AGG + chr3.2:85416535-85416554 MS.gene015088:intron 25.0%
!!! AATGTTTTGCATTTTAAAGG+GGG + chr3.2:85417189-85417208 MS.gene015088:intron 25.0%
!!! GAATGTTTTGCATTTTAAAG+GGG + chr3.2:85417188-85417207 MS.gene015088:intron 25.0%
ACAGAATGGAGATTAAAAAG+AGG - chr3.2:85416931-85416950 None:intergenic 30.0%
ATTGCTAATTAAAGTGGTAC+TGG - chr3.2:85416575-85416594 None:intergenic 30.0%
CTACAAAATCTTGTACCAAA+TGG + chr3.2:85417141-85417160 MS.gene015088:CDS 30.0%
CTGACAAATTTATTAACCGA+TGG - chr3.2:85416499-85416518 None:intergenic 30.0%
GAAGATAAGATAAACTCATG+TGG + chr3.2:85416397-85416416 MS.gene015088:CDS 30.0%
TAAATTACCTTTGTCCCATT+TGG - chr3.2:85417159-85417178 None:intergenic 30.0%
TCAAGTCCATTATAAGCAAT+TGG - chr3.2:85417495-85417514 None:intergenic 30.0%
TGCTATATACTTCATTCACT+TGG - chr3.2:85417048-85417067 None:intergenic 30.0%
TTCTGCTTGGAGAAAATAAT+GGG + chr3.2:85416104-85416123 MS.gene015088:CDS 30.0%
! ATTTTGTGGTTTCCAAATTC+AGG + chr3.2:85416606-85416625 MS.gene015088:intron 30.0%
! GGGACAAAGGTAATTTATTT+TGG + chr3.2:85417162-85417181 MS.gene015088:intron 30.0%
ACATTGGATTCAATCTCAAC+AGG + chr3.2:85417514-85417533 MS.gene015088:CDS 35.0%
ATATATGGATGGTCATACAC+AGG + chr3.2:85417248-85417267 MS.gene015088:intron 35.0%
CTTCAGTTGCAAATATTCTG+CGG - chr3.2:85416042-85416061 None:intergenic 35.0%
CTTCTGCTTGGAGAAAATAA+TGG + chr3.2:85416103-85416122 MS.gene015088:CDS 35.0%
GAGGTTTGATCAAGTAATTG+TGG - chr3.2:85416082-85416101 None:intergenic 35.0%
GCTGCAGAAATTTCACATAT+TGG - chr3.2:85417305-85417324 None:intergenic 35.0%
GTTTGATCAAGTAATTGTGG+TGG - chr3.2:85416079-85416098 None:intergenic 35.0%
TATGCGCCAATTGCTTATAA+TGG + chr3.2:85417486-85417505 MS.gene015088:CDS 35.0%
TCCTTCCAAAGAAGAAAAGA+AGG - chr3.2:85416970-85416989 None:intergenic 35.0%
TGATAATTACCCTTGCATAG+AGG - chr3.2:85416873-85416892 None:intergenic 35.0%
! AACCTAAGTTGAAGCTGAAA+AGG + chr3.2:85416341-85416360 MS.gene015088:CDS 35.0%
! ATCCTTTTCAGCTTCAACTT+AGG - chr3.2:85416346-85416365 None:intergenic 35.0%
! GGAGAAAATAATGGGAACTT+TGG + chr3.2:85416112-85416131 MS.gene015088:CDS 35.0%
! TTTTCAGCTTCAACTTAGGT+TGG - chr3.2:85416342-85416361 None:intergenic 35.0%
!! ACTAGCTCTTTTCTTTCCAT+TGG - chr3.2:85416824-85416843 None:intergenic 35.0%
!! GCTTATAATGGACTTGACAT+TGG + chr3.2:85417498-85417517 MS.gene015088:CDS 35.0%
!! GGTTGATAGAAATGAGAACA+AGG + chr3.2:85416672-85416691 MS.gene015088:CDS 35.0%
!! TCTTTTCTTCTTTGGAAGGA+TGG + chr3.2:85416970-85416989 MS.gene015088:intron 35.0%
!! TTTTGACTGTTCTGATCATG+TGG + chr3.2:85416270-85416289 MS.gene015088:CDS 35.0%
AACATGTGTGAGGAAAACAG+TGG + chr3.2:85416757-85416776 MS.gene015088:CDS 40.0%
ACATGCTATGGTTCACAGAA+TGG - chr3.2:85416945-85416964 None:intergenic 40.0%
AGAGGAACAAAACATGTGTG+AGG + chr3.2:85416747-85416766 MS.gene015088:CDS 40.0%
ATCAACCTTCTTGCTCTTCT+TGG - chr3.2:85416659-85416678 None:intergenic 40.0%
ATGTCCATCTACACTTGCAT+TGG - chr3.2:85416707-85416726 None:intergenic 40.0%
ATTCTGTGAACCATAGCATG+TGG + chr3.2:85416944-85416963 MS.gene015088:intron 40.0%
ATTTCTGCAGCTCCAAATCA+AGG + chr3.2:85417314-85417333 MS.gene015088:CDS 40.0%
CCATACGATATTCACTCCAT+CGG + chr3.2:85416480-85416499 MS.gene015088:intron 40.0%
GGAAAGAAAAGAGCTAGTAG+AGG + chr3.2:85416826-85416845 MS.gene015088:CDS 40.0%
TCTACATGCACCTGAAATTC+TGG - chr3.2:85416379-85416398 None:intergenic 40.0%
TCTTGTACCAAATGGGACAA+AGG + chr3.2:85417149-85417168 MS.gene015088:CDS 40.0%
TGCATCTTTGCACCTGAATT+TGG - chr3.2:85416621-85416640 None:intergenic 40.0%
! GCCTTCTTTTCTTCTTTGGA+AGG + chr3.2:85416966-85416985 MS.gene015088:intron 40.0%
! TGTGGCCTTCTTTTCTTCTT+TGG + chr3.2:85416962-85416981 MS.gene015088:intron 40.0%
! TTCTAAGCTCTGATGATCTG+TGG + chr3.2:85417460-85417479 MS.gene015088:CDS 40.0%
!! ACACATGTTTTGTTCCTCTG+AGG - chr3.2:85416746-85416765 None:intergenic 40.0%
!!! CAGCACGAGGTTTTTTCTTA+GGG - chr3.2:85416426-85416445 None:intergenic 40.0%
ACTGTGTCTCTCAACTCCAA+TGG + chr3.2:85416805-85416824 MS.gene015088:CDS 45.0%
AGAGTCCAAGAAGAGCAAGA+AGG + chr3.2:85416651-85416670 MS.gene015088:CDS 45.0%
ATCCTCAAAGCCTCTATGCA+AGG + chr3.2:85416860-85416879 MS.gene015088:CDS 45.0%
ATGTGTGAGGAAAACAGTGG+AGG + chr3.2:85416760-85416779 MS.gene015088:CDS 45.0%
ATGTTTCCCTCAGCTTCAGA+AGG - chr3.2:85416160-85416179 None:intergenic 45.0%
ATTCCCATTCGCCATCATCA+GGG - chr3.2:85416015-85416034 None:intergenic 45.0%
CCGATGGAGTGAATATCGTA+TGG - chr3.2:85416483-85416502 None:intergenic 45.0%
GAAAAGAAGGCCACATGCTA+TGG - chr3.2:85416957-85416976 None:intergenic 45.0%
GAAGCCAATGCAAGTGTAGA+TGG + chr3.2:85416700-85416719 MS.gene015088:CDS 45.0%
GCTTGATGTGCCAGAATTTC+AGG + chr3.2:85416366-85416385 MS.gene015088:CDS 45.0%
TCCTCAAAGCCTCTATGCAA+GGG + chr3.2:85416861-85416880 MS.gene015088:CDS 45.0%
TGTTTCCCTCAGCTTCAGAA+GGG - chr3.2:85416159-85416178 None:intergenic 45.0%
TTCAGAAGGGGAGCAAAACA+TGG - chr3.2:85416146-85416165 None:intergenic 45.0%
! ATTGTGGTGGAGAGTCATCA+TGG - chr3.2:85416066-85416085 None:intergenic 45.0%
! ATTTTCTCCAAGCAGAAGCG+AGG - chr3.2:85416101-85416120 None:intergenic 45.0%
! CTTACATCTTTTGCAGCACG+AGG - chr3.2:85416439-85416458 None:intergenic 45.0%
!! TATCCCTGATGATGGCGAAT+GGG + chr3.2:85416009-85416028 MS.gene015088:CDS 45.0%
!! TTCCTCTGAGGTATAACCAC+TGG - chr3.2:85416734-85416753 None:intergenic 45.0%
!!! GCAGCACGAGGTTTTTTCTT+AGG - chr3.2:85416427-85416446 None:intergenic 45.0%
AATCTCGCCATGCCATCAAG+GGG - chr3.2:85417005-85417024 None:intergenic 50.0%
ACCCTTGCATAGAGGCTTTG+AGG - chr3.2:85416865-85416884 None:intergenic 50.0%
CATTCCCATTCGCCATCATC+AGG - chr3.2:85416016-85416035 None:intergenic 50.0%
CTCCAGTGGTTATACCTCAG+AGG + chr3.2:85416729-85416748 MS.gene015088:CDS 50.0%
CTTGGAGCTATCCCTGATGA+TGG + chr3.2:85416001-85416020 MS.gene015088:CDS 50.0%
GAATCTCGCCATGCCATCAA+GGG - chr3.2:85417006-85417025 None:intergenic 50.0%
GATCAAACCTCGCTTCTGCT+TGG + chr3.2:85416091-85416110 MS.gene015088:CDS 50.0%
GTAGATGGACATACCTCCAG+TGG + chr3.2:85416715-85416734 MS.gene015088:CDS 50.0%
GTTTCCCTCAGCTTCAGAAG+GGG - chr3.2:85416158-85416177 None:intergenic 50.0%
!! CTATCCCTGATGATGGCGAA+TGG + chr3.2:85416008-85416027 MS.gene015088:CDS 50.0%
!! CTCTGAGGTATAACCACTGG+AGG - chr3.2:85416731-85416750 None:intergenic 50.0%
CGAATCTCGCCATGCCATCA+AGG - chr3.2:85417007-85417026 None:intergenic 55.0%
TGGTCACACTAGCCCCTTGA+TGG + chr3.2:85416990-85417009 MS.gene015088:intron 55.0%
! ACACTAGCCCCTTGATGGCA+TGG + chr3.2:85416995-85417014 MS.gene015088:intron 55.0%
!! TGCTCCCCTTCTGAAGCTGA+GGG + chr3.2:85416151-85416170 MS.gene015088:CDS 55.0%
!! TTGCTCCCCTTCTGAAGCTG+AGG + chr3.2:85416150-85416169 MS.gene015088:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 85415992 85417560 85415992 ID=MS.gene015088
chr3.2 mRNA 85415992 85417560 85415992 ID=MS.gene015088.t1;Parent=MS.gene015088
chr3.2 exon 85415992 85416453 85415992 ID=MS.gene015088.t1.exon1;Parent=MS.gene015088.t1
chr3.2 CDS 85415992 85416453 85415992 ID=cds.MS.gene015088.t1;Parent=MS.gene015088.t1
chr3.2 exon 85416628 85416882 85416628 ID=MS.gene015088.t1.exon2;Parent=MS.gene015088.t1
chr3.2 CDS 85416628 85416882 85416628 ID=cds.MS.gene015088.t1;Parent=MS.gene015088.t1
chr3.2 exon 85417105 85417170 85417105 ID=MS.gene015088.t1.exon3;Parent=MS.gene015088.t1
chr3.2 CDS 85417105 85417170 85417105 ID=cds.MS.gene015088.t1;Parent=MS.gene015088.t1
chr3.2 exon 85417270 85417335 85417270 ID=MS.gene015088.t1.exon4;Parent=MS.gene015088.t1
chr3.2 CDS 85417270 85417335 85417270 ID=cds.MS.gene015088.t1;Parent=MS.gene015088.t1
chr3.2 exon 85417459 85417560 85417459 ID=MS.gene015088.t1.exon5;Parent=MS.gene015088.t1
chr3.2 CDS 85417459 85417560 85417459 ID=cds.MS.gene015088.t1;Parent=MS.gene015088.t1
Gene Sequence

>MS.gene015088

ATGGAAACACTTGGAGCTATCCCTGATGATGGCGAATGGGAATGCTTCCGCAGAATATTTGCAACTGAAGACCATGATGACTCTCCACCACAATTACTTGATCAAACCTCGCTTCTGCTTGGAGAAAATAATGGGAACTTTGGAGTACAATCCATGTTTTGCTCCCCTTCTGAAGCTGAGGGAAACATGAATACTAATGTGTTTTATTCTTTTGATTCTCACATCAACTATAATTCACTAGAAAGTAATCATAATACTCAAGGTCACACAAACTACTATTTTGACTGTTCTGATCATGTGGTAGCTAATAATAGTGACAGAACAGAGAATTTTGATCACAATCAAGTCCAACCTAAGTTGAAGCTGAAAAGGATGCTTGATGTGCCAGAATTTCAGGTGCATGTAGAAGATAAGATAAACTCATGTGGGAACCCTAAGAAAAAACCTCGTGCTGCAAAAGATGTAAGCTTAATTTGTCTATATTTATACCATACGATATTCACTCCATCGGTTAATAAATTTGTCAGCTTAGCGGTTAGAGTCTTGACATTTTGTAATCTCAAAGGACAAAGTTCAAATTCCAGTACCACTTTAATTAGCAATAATGATTTGAAATTTTGTGGTTTCCAAATTCAGGTGCAAAGATGCATGAAAAATTCAGAGTCCAAGAAGAGCAAGAAGGTTGATAGAAATGAGAACAAGGCAGAAGAAGCCAATGCAAGTGTAGATGGACATACCTCCAGTGGTTATACCTCAGAGGAACAAAACATGTGTGAGGAAAACAGTGGAGGAGCTTCTGCAGCTTCTAAATCAACTGTGTCTCTCAACTCCAATGGAAAGAAAAGAGCTAGTAGAGGATCAGCAACAGATCCTCAAAGCCTCTATGCAAGGGTAATTATCAATTTCTTAAGTACAAATGCCTTTTGTTTTACTATTCCTCTTTTTAATCTCCATTCTGTGAACCATAGCATGTGGCCTTCTTTTCTTCTTTGGAAGGATGGTCACACTAGCCCCTTGATGGCATGGCGAGATTCGCGAAGCGAAGATCATTCGCCAAGTGAATGAAGTATATAGCAATTTATGTGATGCTTATTGTCTTTTTGAATTTTACAGAAAAGAAGGGAGAAAATAAACGAGAGACTGAGAACTCTACAAAATCTTGTACCAAATGGGACAAAGGTAATTTATTTTGGCATGAATGTTTTGCATTTTAAAGGGGGTTGTAAGTTGCAATTATTTGAGAGATGTATAATTTGATATATGGATGGTCATACACAGGTTGATATAAGCACAATGCTTGAAGATGCAATCCAATATGTGAAATTTCTGCAGCTCCAAATCAAGGTAATATATGAGTCGCGAAATATAGACGATTAATAATTAATTTCTGTTTAGAAATATCAAGGTGTGTGTATATGTTCAATCAGAATAACATCTTTTTAATATGAATGTTTATCTCTTATATAGCTTCTAAGCTCTGATGATCTGTGGATGTATGCGCCAATTGCTTATAATGGACTTGACATTGGATTCAATCTCAACAGGAAGAAGATTTCTCCACCACCATGA
Protein sequence

>MS.gene015088.t1

METLGAIPDDGEWECFRRIFATEDHDDSPPQLLDQTSLLLGENNGNFGVQSMFCSPSEAEGNMNTNVFYSFDSHINYNSLESNHNTQGHTNYYFDCSDHVVANNSDRTENFDHNQVQPKLKLKRMLDVPEFQVHVEDKINSCGNPKKKPRAAKDVQRCMKNSESKKSKKVDRNENKAEEANASVDGHTSSGYTSEEQNMCEENSGGASAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNLNRKKISPPP