AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015113

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015113.t1 MTR_3g102600 92.935 184 13 0 1 184 1 184 1.44e-118 333
MS.gene015113.t1 MTR_3g102600 93.370 181 12 0 1 181 1 181 5.49e-116 328
MS.gene015113.t1 MTR_3g102600 93.333 135 9 0 50 184 1 135 1.73e-89 258
MS.gene015113.t1 MTR_3g102590 73.846 195 40 2 1 184 1 195 2.83e-89 259
MS.gene015113.t1 MTR_3g102590 73.958 192 39 2 1 181 1 192 2.50e-87 256
MS.gene015113.t1 MTR_3g102600 93.939 132 8 0 50 181 1 132 6.17e-87 253
MS.gene015113.t1 MTR_3g106220 84.211 133 21 0 1 133 1 133 2.36e-74 235
MS.gene015113.t1 MTR_3g106220 76.471 51 12 0 131 181 197 247 1.91e-20 88.2
MS.gene015113.t1 MTR_2g034960 43.404 235 75 2 5 181 26 260 9.02e-61 199
MS.gene015113.t1 MTR_3g086100 45.339 236 67 2 8 181 13 248 2.52e-60 197
MS.gene015113.t1 MTR_8g079940 45.763 236 68 2 6 181 23 258 9.76e-60 194
MS.gene015113.t1 MTR_2g450070 67.424 132 43 0 2 133 12 143 4.39e-58 192
MS.gene015113.t1 MTR_2g450070 66.667 51 17 0 131 181 212 262 3.03e-16 76.3
MS.gene015113.t1 MTR_2g450070 67.424 132 43 0 2 133 12 143 5.84e-58 192
MS.gene015113.t1 MTR_2g450070 66.667 51 17 0 131 181 212 262 3.05e-16 76.3
MS.gene015113.t1 MTR_1g013170 69.767 129 39 0 5 133 2 130 2.70e-57 187
MS.gene015113.t1 MTR_1g013170 74.510 51 13 0 131 181 190 240 6.08e-18 80.9
MS.gene015113.t1 MTR_1g013180 65.414 133 46 0 1 133 149 281 2.07e-54 183
MS.gene015113.t1 MTR_1g013180 64.706 51 18 0 131 181 341 391 4.90e-15 72.8
MS.gene015113.t1 MTR_7g117705 67.692 130 41 1 5 133 2 131 1.23e-53 177
MS.gene015113.t1 MTR_7g117705 64.706 51 18 0 131 181 190 240 3.85e-16 75.9
MS.gene015113.t1 MTR_4g121020 58.647 133 55 0 3 135 26 158 8.34e-53 179
MS.gene015113.t1 MTR_4g121020 66.667 51 17 0 131 181 214 264 6.19e-17 78.2
MS.gene015113.t1 MTR_4g121020 58.647 133 55 0 3 135 26 158 8.43e-53 179
MS.gene015113.t1 MTR_4g121020 66.667 51 17 0 131 181 214 264 6.19e-17 78.2
MS.gene015113.t1 MTR_4g131600 65.323 124 43 0 8 131 20 143 2.29e-50 171
MS.gene015113.t1 MTR_4g131600 62.745 51 19 0 131 181 200 250 4.74e-15 72.8
MS.gene015113.t1 MTR_4g131580 61.538 130 50 0 2 131 11 140 4.79e-50 170
MS.gene015113.t1 MTR_4g131580 66.667 51 17 0 131 181 199 249 1.32e-15 74.3
MS.gene015113.t1 MTR_4g131570 64.516 124 44 0 8 131 17 140 1.60e-48 166
MS.gene015113.t1 MTR_4g131570 64.706 51 18 0 131 181 202 252 5.13e-15 72.4
MS.gene015113.t1 MTR_1g032570 57.042 142 56 1 4 140 7 148 9.87e-47 161
MS.gene015113.t1 MTR_1g032570 63.462 52 19 0 130 181 198 249 2.61e-16 76.3
MS.gene015113.t1 MTR_4g021760 36.916 214 99 2 3 181 6 218 6.92e-42 143
MS.gene015113.t1 MTR_4g021845 34.906 212 102 2 8 184 10 220 1.35e-38 132
MS.gene015113.t1 MTR_3g086100 42.938 177 39 2 67 181 1 177 2.37e-37 134
MS.gene015113.t1 MTR_4g021790 34.928 209 100 2 8 181 10 217 1.40e-36 128
MS.gene015113.t1 MTR_4g021855 34.928 209 100 2 8 181 10 217 2.88e-36 128
MS.gene015113.t1 MTR_0450s0040 32.227 211 102 1 12 181 8 218 6.86e-33 120
MS.gene015113.t1 MTR_6g045327 32.701 211 108 2 7 183 13 223 1.97e-29 112
MS.gene015113.t1 MTR_7g026400 33.161 193 83 2 35 181 14 206 8.46e-29 112
MS.gene015113.t1 MTR_8g105600 29.694 229 105 4 8 181 9 236 7.58e-26 103
MS.gene015113.t1 MTR_5g055260 33.333 189 103 5 8 181 10 190 6.78e-25 97.4
MS.gene015113.t1 MTR_1g032570 74.603 63 16 0 67 129 1 63 9.29e-25 100
MS.gene015113.t1 MTR_1g032570 63.462 52 19 0 130 181 129 180 1.96e-16 76.6
MS.gene015113.t1 MTR_1g013160 68.750 64 20 0 70 133 1 64 1.34e-24 94.4
MS.gene015113.t1 MTR_3g092780 37.302 126 74 2 12 133 56 180 4.18e-21 90.1
MS.gene015113.t1 MTR_3g092780 37.302 126 74 2 12 133 56 180 4.24e-21 90.1
MS.gene015113.t1 MTR_4g061360 39.669 121 70 1 12 129 89 209 4.33e-21 90.1
MS.gene015113.t1 MTR_1g067110 38.017 121 72 2 12 129 85 205 5.58e-21 89.7
MS.gene015113.t1 MTR_1g067110 38.017 121 72 2 12 129 85 205 5.60e-21 89.7
MS.gene015113.t1 MTR_3g092780 37.097 124 73 2 12 131 56 178 1.24e-20 89.0
MS.gene015113.t1 MTR_3g092780 37.097 124 73 2 12 131 56 178 1.26e-20 89.0
MS.gene015113.t1 MTR_7g118260 36.170 141 79 3 1 133 1 138 1.77e-20 88.2
MS.gene015113.t1 MTR_7g118260 36.170 141 79 3 1 133 1 138 1.83e-20 88.2
MS.gene015113.t1 MTR_8g093040 34.507 142 88 1 1 142 7 143 2.94e-20 85.5
MS.gene015113.t1 MTR_8g024260 38.655 119 70 1 14 129 38 156 2.72e-19 85.1
MS.gene015113.t1 MTR_4g108880 33.065 124 80 1 12 132 33 156 3.20e-18 81.6
MS.gene015113.t1 MTR_6g016850 32.540 126 82 3 6 129 7 131 6.89e-18 77.0
MS.gene015113.t1 MTR_3g037390 32.258 124 81 1 12 132 24 147 2.41e-17 79.3
MS.gene015113.t1 MTR_4g023980 28.676 136 62 1 58 158 39 174 3.39e-17 75.5
MS.gene015113.t1 MTR_4g121020 66.667 51 17 0 131 181 110 160 3.55e-17 79.0
MS.gene015113.t1 MTR_4g121020 51.020 49 24 0 87 135 6 54 2.94e-12 64.7
MS.gene015113.t1 MTR_3g084390 46.835 79 32 1 1 69 1 79 1.04e-15 68.9
MS.gene015113.t1 MTR_8g032710 30.882 136 85 2 11 137 20 155 2.05e-15 73.6
MS.gene015113.t1 MTR_5g014040 38.211 123 70 3 8 128 14 132 6.32e-15 72.4
MS.gene015113.t1 MTR_5g014040 50.980 51 25 0 131 181 310 360 1.28e-11 62.8
MS.gene015113.t1 MTR_5g014040 38.211 123 70 3 8 128 14 132 6.36e-15 72.4
MS.gene015113.t1 MTR_5g014040 50.980 51 25 0 131 181 310 360 1.23e-11 62.8
MS.gene015113.t1 MTR_6g088950 30.189 159 107 4 10 164 5 163 1.59e-14 68.9
MS.gene015113.t1 MTR_4g064730 52.941 51 24 0 131 181 130 180 1.06e-12 65.5
MS.gene015113.t1 MTR_4g098870 52.941 51 24 0 131 181 309 359 2.23e-12 64.7
MS.gene015113.t1 MTR_4g098870 33.607 122 77 2 8 128 14 132 5.06e-12 63.9
MS.gene015113.t1 MTR_4g098870 52.941 51 24 0 131 181 348 398 2.77e-12 64.7
MS.gene015113.t1 MTR_4g098870 33.607 122 77 2 8 128 53 171 6.98e-12 63.5
MS.gene015113.t1 MTR_4g098870 52.941 51 24 0 131 181 309 359 2.91e-12 64.7
MS.gene015113.t1 MTR_4g098870 33.607 122 77 2 8 128 14 132 7.28e-12 63.5
MS.gene015113.t1 MTR_4g098870 52.941 51 24 0 131 181 329 379 2.99e-12 64.7
MS.gene015113.t1 MTR_4g098870 33.607 122 77 2 8 128 34 152 7.26e-12 63.5
MS.gene015113.t1 MTR_4g098870 33.607 122 77 2 8 128 34 152 4.11e-12 64.3
MS.gene015113.t1 MTR_4g098870 50.943 53 26 0 131 183 329 381 8.72e-12 63.2
MS.gene015113.t1 MTR_4g078810 49.020 51 26 0 131 181 157 207 9.83e-12 62.8
MS.gene015113.t1 MTR_5g014040 50.980 51 25 0 131 181 270 320 1.29e-11 62.8
MS.gene015113.t1 MTR_7g089010 49.020 51 26 0 131 181 90 140 1.88e-11 61.6
MS.gene015113.t1 MTR_2g090675 49.020 51 26 0 131 181 160 210 1.95e-11 62.0
MS.gene015113.t1 MTR_8g038620 28.986 138 78 3 14 131 11 148 2.91e-11 59.7
MS.gene015113.t1 MTR_1874s0010 31.858 113 73 2 10 120 2 112 4.79e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015113.t1 AT4G31920 53.125 224 59 1 6 183 11 234 4.60e-74 232
MS.gene015113.t1 AT2G25180 68.217 129 41 0 3 131 8 136 2.72e-59 194
MS.gene015113.t1 AT2G25180 66.667 51 17 0 131 181 194 244 3.15e-17 79.0
MS.gene015113.t1 AT3G16857 54.861 144 63 1 8 151 33 174 2.69e-50 172
MS.gene015113.t1 AT3G16857 68.627 51 16 0 131 181 236 286 1.25e-16 77.4
MS.gene015113.t1 AT1G67710 43.644 236 70 5 9 181 8 243 2.77e-50 169
MS.gene015113.t1 AT3G16857 54.110 146 65 1 6 151 31 174 3.85e-50 171
MS.gene015113.t1 AT3G16857 68.627 51 16 0 131 181 236 286 1.60e-16 77.0
MS.gene015113.t1 AT5G58080 63.158 133 47 2 2 133 8 139 1.52e-45 158
MS.gene015113.t1 AT5G58080 64.706 51 18 0 131 181 193 243 5.69e-16 75.5
MS.gene015113.t1 AT2G01760 57.031 128 54 1 5 131 4 131 2.36e-43 148
MS.gene015113.t1 AT2G01760 59.259 54 22 0 130 183 198 251 1.95e-16 76.3
MS.gene015113.t1 AT2G01760 46.795 156 54 2 5 131 4 159 2.22e-37 133
MS.gene015113.t1 AT2G01760 59.259 54 22 0 130 183 226 279 2.14e-16 76.3
MS.gene015113.t1 AT3G16857 55.238 105 45 1 47 151 2 104 3.48e-34 127
MS.gene015113.t1 AT3G16857 68.627 51 16 0 131 181 166 216 1.45e-16 77.0
MS.gene015113.t1 AT5G49240 31.535 241 104 3 5 184 35 275 9.00e-30 111
MS.gene015113.t1 AT1G67710 41.011 178 42 5 67 181 1 178 3.09e-28 109
MS.gene015113.t1 AT1G49190 30.000 240 103 4 7 181 29 268 3.89e-27 106
MS.gene015113.t1 AT3G62670 32.068 237 102 4 2 181 31 265 6.37e-27 105
MS.gene015113.t1 AT5G24470 37.063 143 79 4 6 138 42 183 1.95e-22 94.0
MS.gene015113.t1 AT1G49190 37.600 125 78 0 7 131 29 153 3.94e-22 93.2
MS.gene015113.t1 AT2G01760 62.121 66 24 1 67 131 1 66 1.27e-20 87.4
MS.gene015113.t1 AT2G01760 60.377 53 21 0 131 183 134 186 1.56e-16 76.3
MS.gene015113.t1 AT2G46790 37.705 122 71 2 12 129 37 157 5.25e-20 86.7
MS.gene015113.t1 AT2G46790 37.705 122 71 2 12 129 37 157 5.30e-20 86.7
MS.gene015113.t1 AT5G02810 38.843 121 71 1 12 129 78 198 5.44e-20 87.0
MS.gene015113.t1 AT5G60100 38.017 121 72 1 12 129 64 184 1.64e-19 85.1
MS.gene015113.t1 AT5G60100 38.017 121 72 1 12 129 64 184 1.64e-19 85.1
MS.gene015113.t1 AT5G60100 38.017 121 72 1 12 129 64 184 1.64e-19 85.1
MS.gene015113.t1 AT5G60100 38.017 121 72 1 12 129 64 184 2.49e-19 85.1
MS.gene015113.t1 AT5G60100 38.017 121 72 1 12 129 64 184 3.70e-19 84.3
MS.gene015113.t1 AT5G60100 38.017 121 72 1 12 129 64 184 3.70e-19 84.3
MS.gene015113.t1 AT5G60100 38.017 121 72 1 12 129 64 184 3.70e-19 84.3
MS.gene015113.t1 AT5G61380 34.677 124 78 1 12 132 19 142 1.39e-18 82.8
MS.gene015113.t1 AT1G67710 34.810 158 40 5 87 181 12 169 7.90e-16 74.7
MS.gene015113.t1 AT5G07210 31.373 153 93 4 12 162 16 158 2.84e-14 70.5
MS.gene015113.t1 AT5G07210 50.980 51 25 0 131 181 221 271 5.82e-11 60.8
MS.gene015113.t1 AT5G44190 58.824 51 21 0 131 181 146 196 5.98e-14 69.3
MS.gene015113.t1 AT5G44190 58.824 51 21 0 131 181 146 196 6.25e-14 68.9
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 8.31e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 8.09e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 8.31e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 8.09e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 8.31e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 8.09e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 8.31e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 8.09e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 8.31e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 8.09e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 8.31e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 8.09e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 9.06e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 6.87e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 9.06e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 6.87e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 9.06e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 6.87e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 9.06e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 6.87e-11 60.5
MS.gene015113.t1 AT4G18020 35.385 130 75 3 6 128 12 139 9.06e-13 66.2
MS.gene015113.t1 AT4G18020 47.541 61 30 1 125 183 287 347 6.87e-11 60.5
MS.gene015113.t1 AT5G59570 51.923 52 25 0 130 181 139 190 1.57e-12 64.7
MS.gene015113.t1 AT5G59570 51.923 52 25 0 130 181 139 190 1.57e-12 64.7
MS.gene015113.t1 AT2G40970 50.980 51 25 0 131 181 104 154 1.68e-12 64.3
MS.gene015113.t1 AT5G07210 30.488 164 88 6 12 162 16 166 1.96e-12 65.1
MS.gene015113.t1 AT5G07210 50.980 51 25 0 131 181 229 279 6.18e-11 60.8
MS.gene015113.t1 AT3G46640 52.941 51 24 0 131 181 143 193 2.04e-12 64.7
MS.gene015113.t1 AT3G46640 52.941 51 24 0 131 181 143 193 2.04e-12 64.7
MS.gene015113.t1 AT3G46640 52.941 51 24 0 131 181 143 193 2.07e-12 64.7
MS.gene015113.t1 AT2G20570 56.863 51 22 0 131 181 152 202 2.30e-12 64.7
MS.gene015113.t1 AT2G20570 62.222 45 17 0 137 181 174 218 4.24e-12 63.9
MS.gene015113.t1 AT5G05090 49.020 51 26 0 131 181 80 130 1.53e-11 61.6
MS.gene015113.t1 AT3G10760 49.020 51 26 0 131 181 104 154 1.85e-11 62.0

Find 48 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCTTCTCTCTTGCTTT+TGG 0.205158 3.2:-85216816 MS.gene015113:CDS
CTTGAAACTGTTAATCAGTT+AGG 0.311031 3.2:-85216055 MS.gene015113:CDS
GCTCCACAGACCAAACAAAC+TGG 0.386812 3.2:+85216092 None:intergenic
TCTGCTGAAACCTGTGAGAT+TGG 0.389884 3.2:-85216161 MS.gene015113:CDS
TGGAGGAACTAAGGAACATT+TGG 0.394946 3.2:-85216141 MS.gene015113:CDS
ATAAGAAGTCCCAGTTTGTT+TGG 0.408211 3.2:-85216102 MS.gene015113:CDS
ACATTTGGCAGCATGTAATT+CGG 0.438242 3.2:-85216126 MS.gene015113:CDS
TGTTATTGCTTTACTAGTTG+TGG 0.457990 3.2:+85216500 None:intergenic
GGAACTTGTAGGACTTGAAA+TGG 0.458110 3.2:-85216388 MS.gene015113:CDS
AGCTTGAGTCCATCCATGTC+AGG 0.472593 3.2:+85216414 None:intergenic
CAGAAAATCACGGGCACCAT+GGG 0.476586 3.2:+85216180 None:intergenic
AGACGTGGCGACCCATCTCC+AGG 0.480850 3.2:-85215886 MS.gene015113:CDS
CTTAGTTCCTCCAATCTCAC+AGG 0.481151 3.2:+85216151 None:intergenic
CTGTGAGATTGGAGGAACTA+AGG 0.487418 3.2:-85216150 MS.gene015113:CDS
ACTAGAAAAGTGCCTGGAGA+TGG 0.493120 3.2:+85215874 None:intergenic
GTCCCAGTTTGTTTGGTCTG+TGG 0.493912 3.2:-85216095 MS.gene015113:CDS
CTCAAGCTGCTGGAACTTGT+AGG 0.500097 3.2:-85216399 MS.gene015113:CDS
TGATACGGAGCTGGTGATGA+AGG 0.507591 3.2:-85216209 MS.gene015113:CDS
CATGGATGGACTCAAGCTGC+TGG 0.519635 3.2:-85216409 MS.gene015113:CDS
TGTGAACTTCAGCGATTACC+AGG 0.522457 3.2:+85216439 None:intergenic
CTAGAAAAGTGCCTGGAGAT+GGG 0.532146 3.2:+85215875 None:intergenic
CTCGCCAACTTACTTATGAC+AGG 0.542488 3.2:+85216360 None:intergenic
CTCCACAGACCAAACAAACT+GGG 0.546619 3.2:+85216093 None:intergenic
TCCACTGATCGGTTTCCCAT+CGG 0.547632 3.2:-85216866 MS.gene015113:CDS
AGCGAGAACACGCATTCCGA+TGG 0.550357 3.2:+85216850 None:intergenic
TAAAGGACTAGAAAAGTGCC+TGG 0.553641 3.2:+85215868 None:intergenic
TGAATGTTGAAAATATTACA+AGG 0.562722 3.2:-85215911 MS.gene015113:CDS
GCTGAAACCTGTGAGATTGG+AGG 0.565413 3.2:-85216158 MS.gene015113:CDS
TCCAAAAGCAAGAGAGAAGG+AGG 0.572741 3.2:+85216815 None:intergenic
GTTGTCTGTATATAGTGATA+CGG 0.576810 3.2:-85216224 MS.gene015113:CDS
GACCGTGGTATTGACATGAT+CGG 0.585397 3.2:+85216783 None:intergenic
CAGGTTTCAGCAGAAAATCA+CGG 0.587467 3.2:+85216170 None:intergenic
TAACAGTTTCAAGAAACTTG+CGG 0.590533 3.2:+85216065 None:intergenic
GTTTCCAAAAGCAAGAGAGA+AGG 0.592241 3.2:+85216812 None:intergenic
GCAGAAAATCACGGGCACCA+TGG 0.594928 3.2:+85216179 None:intergenic
TGTATATAGTGATACGGAGC+TGG 0.596919 3.2:-85216218 MS.gene015113:CDS
TAATGGATGATTCCACTGAT+CGG 0.598611 3.2:-85216877 MS.gene015113:CDS
TCCGATGGGAAACCGATCAG+TGG 0.602032 3.2:+85216865 None:intergenic
AGGTTTCAGCAGAAAATCAC+GGG 0.606322 3.2:+85216171 None:intergenic
GCGAGAACACGCATTCCGAT+GGG 0.611220 3.2:+85216851 None:intergenic
GTTCACATGCCTGACATGGA+TGG 0.616361 3.2:-85216423 MS.gene015113:CDS
GTGATGAAGGCAATTTCCCA+TGG 0.624988 3.2:-85216196 MS.gene015113:CDS
TGAAGTTCACATGCCTGACA+TGG 0.628648 3.2:-85216427 MS.gene015113:CDS
GAATGTTGAAAATATTACAA+GGG 0.643931 3.2:-85215910 MS.gene015113:CDS
AAATATTACAAGGGAAGACG+TGG 0.654849 3.2:-85215901 MS.gene015113:CDS
AAACATAGACATGTTTGACC+TGG 0.663608 3.2:-85216457 MS.gene015113:CDS
CGTGGTATTGACATGATCGG+AGG 0.677686 3.2:+85216786 None:intergenic
CTCCGATCATGTCAATACCA+CGG 0.680497 3.2:-85216785 MS.gene015113:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCTATCTTATTTGTTTA+TGG - chr3.2:85216211-85216230 MS.gene015113:CDS 15.0%
!! GAATGTTGAAAATATTACAA+GGG - chr3.2:85216840-85216859 MS.gene015113:CDS 20.0%
!! GTACAAAGTATAATGAAAAT+TGG + chr3.2:85216059-85216078 None:intergenic 20.0%
!! TGAATGTTGAAAATATTACA+AGG - chr3.2:85216839-85216858 MS.gene015113:CDS 20.0%
!!! ATCAAACCAAAAATCTTTTT+GGG + chr3.2:85216820-85216839 None:intergenic 20.0%
!!! ATCTTATTTGTTTATGGTTT+GGG - chr3.2:85216217-85216236 MS.gene015113:CDS 20.0%
!!! TATCTTATTTGTTTATGGTT+TGG - chr3.2:85216216-85216235 MS.gene015113:CDS 20.0%
! AATGAAGAAACAGAACAAAT+AGG + chr3.2:85216441-85216460 None:intergenic 25.0%
! GATCGTTGTTATAAATTGTT+TGG - chr3.2:85216496-85216515 MS.gene015113:CDS 25.0%
!! CATCAAACCAAAAATCTTTT+TGG + chr3.2:85216821-85216840 None:intergenic 25.0%
!!! TCATGTTAATGTTGTTTTAC+TGG - chr3.2:85216783-85216802 MS.gene015113:intron 25.0%
!!! TTAGTCTTATACACGTAAAT+TGG + chr3.2:85216016-85216035 None:intergenic 25.0%
CTTGAAACTGTTAATCAGTT+AGG - chr3.2:85216695-85216714 MS.gene015113:intron 30.0%
GTTGTCTGTATATAGTGATA+CGG - chr3.2:85216526-85216545 MS.gene015113:intron 30.0%
TAACAGTTTCAAGAAACTTG+CGG + chr3.2:85216688-85216707 None:intergenic 30.0%
TGTTATTGCTTTACTAGTTG+TGG + chr3.2:85216253-85216272 None:intergenic 30.0%
AAACATAGACATGTTTGACC+TGG - chr3.2:85216293-85216312 MS.gene015113:intron 35.0%
AAATATTACAAGGGAAGACG+TGG - chr3.2:85216849-85216868 MS.gene015113:CDS 35.0%
ACATTTGGCAGCATGTAATT+CGG - chr3.2:85216624-85216643 MS.gene015113:intron 35.0%
ACTTTGTACCTGTTATTGCT+TGG - chr3.2:85216070-85216089 MS.gene015113:CDS 35.0%
TAGACTTTGAATGCATATCC+AGG + chr3.2:85216173-85216192 None:intergenic 35.0%
TCTTCCTGTCATAAGTAAGT+TGG - chr3.2:85216386-85216405 MS.gene015113:CDS 35.0%
! ATAAGAAGTCCCAGTTTGTT+TGG - chr3.2:85216648-85216667 MS.gene015113:intron 35.0%
! GCTGTACCCAAAAAGATTTT+TGG - chr3.2:85216811-85216830 MS.gene015113:CDS 35.0%
! TCTGAAATCCAAGCAATAAC+AGG + chr3.2:85216081-85216100 None:intergenic 35.0%
!!! TAATGTTGTTTTACTGGCAG+AGG - chr3.2:85216789-85216808 MS.gene015113:CDS 35.0%
AGGTTTCAGCAGAAAATCAC+GGG + chr3.2:85216582-85216601 None:intergenic 40.0%
CAGGTTTCAGCAGAAAATCA+CGG + chr3.2:85216583-85216602 None:intergenic 40.0%
GGAACTTGTAGGACTTGAAA+TGG - chr3.2:85216362-85216381 MS.gene015113:intron 40.0%
GTTTCCAAAAGCAAGAGAGA+AGG + chr3.2:85215941-85215960 None:intergenic 40.0%
TATCAAAAAGAAGCAGACCG+TGG + chr3.2:85215985-85216004 None:intergenic 40.0%
TGGAGGAACTAAGGAACATT+TGG - chr3.2:85216609-85216628 MS.gene015113:intron 40.0%
TGTATATAGTGATACGGAGC+TGG - chr3.2:85216532-85216551 MS.gene015113:intron 40.0%
ATTGCTTTCTGTTCTGCTCC+TGG - chr3.2:85216152-85216171 MS.gene015113:CDS 45.0%
CTCCACAGACCAAACAAACT+GGG + chr3.2:85216660-85216679 None:intergenic 45.0%
CTCCGATCATGTCAATACCA+CGG - chr3.2:85215965-85215984 MS.gene015113:intron 45.0%
CTCGCCAACTTACTTATGAC+AGG + chr3.2:85216393-85216412 None:intergenic 45.0%
CTGTGAGATTGGAGGAACTA+AGG - chr3.2:85216600-85216619 MS.gene015113:intron 45.0%
CTTAGTTCCTCCAATCTCAC+AGG + chr3.2:85216602-85216621 None:intergenic 45.0%
GTGATGAAGGCAATTTCCCA+TGG - chr3.2:85216554-85216573 MS.gene015113:intron 45.0%
TCCAAAAGCAAGAGAGAAGG+AGG + chr3.2:85215938-85215957 None:intergenic 45.0%
TCTGCTGAAACCTGTGAGAT+TGG - chr3.2:85216589-85216608 MS.gene015113:intron 45.0%
TGAAGTTCACATGCCTGACA+TGG - chr3.2:85216323-85216342 MS.gene015113:intron 45.0%
TGTGAACTTCAGCGATTACC+AGG + chr3.2:85216314-85216333 None:intergenic 45.0%
! TCCTCCTTCTCTCTTGCTTT+TGG - chr3.2:85215934-85215953 MS.gene015113:CDS 45.0%
!! CTAGAAAAGTGCCTGGAGAT+GGG + chr3.2:85216878-85216897 None:intergenic 45.0%
!! GACCGTGGTATTGACATGAT+CGG + chr3.2:85215970-85215989 None:intergenic 45.0%
AGCTTGAGTCCATCCATGTC+AGG + chr3.2:85216339-85216358 None:intergenic 50.0%
CAGAAAATCACGGGCACCAT+GGG + chr3.2:85216573-85216592 None:intergenic 50.0%
CTCAAGCTGCTGGAACTTGT+AGG - chr3.2:85216351-85216370 MS.gene015113:intron 50.0%
GCTCCACAGACCAAACAAAC+TGG + chr3.2:85216661-85216680 None:intergenic 50.0%
GCTGAAACCTGTGAGATTGG+AGG - chr3.2:85216592-85216611 MS.gene015113:intron 50.0%
GTTCACATGCCTGACATGGA+TGG - chr3.2:85216327-85216346 MS.gene015113:intron 50.0%
! GTCCCAGTTTGTTTGGTCTG+TGG - chr3.2:85216655-85216674 MS.gene015113:intron 50.0%
! TCCACTGATCGGTTTCCCAT+CGG - chr3.2:85215884-85215903 MS.gene015113:CDS 50.0%
! TGATACGGAGCTGGTGATGA+AGG - chr3.2:85216541-85216560 MS.gene015113:intron 50.0%
!! CGTGGTATTGACATGATCGG+AGG + chr3.2:85215967-85215986 None:intergenic 50.0%
AGCGAGAACACGCATTCCGA+TGG + chr3.2:85215903-85215922 None:intergenic 55.0%
GCAGAAAATCACGGGCACCA+TGG + chr3.2:85216574-85216593 None:intergenic 55.0%
GCGAGAACACGCATTCCGAT+GGG + chr3.2:85215902-85215921 None:intergenic 55.0%
TCCGATGGGAAACCGATCAG+TGG + chr3.2:85215888-85215907 None:intergenic 55.0%
! CATGGATGGACTCAAGCTGC+TGG - chr3.2:85216341-85216360 MS.gene015113:intron 55.0%
AGACGTGGCGACCCATCTCC+AGG - chr3.2:85216864-85216883 MS.gene015113:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 85215875 85216897 85215875 ID=MS.gene015113
chr3.2 mRNA 85215875 85216897 85215875 ID=MS.gene015113.t1;Parent=MS.gene015113
chr3.2 exon 85216786 85216897 85216786 ID=MS.gene015113.t1.exon1;Parent=MS.gene015113.t1
chr3.2 CDS 85216786 85216897 85216786 ID=cds.MS.gene015113.t1;Parent=MS.gene015113.t1
chr3.2 exon 85216373 85216525 85216373 ID=MS.gene015113.t1.exon2;Parent=MS.gene015113.t1
chr3.2 CDS 85216373 85216525 85216373 ID=cds.MS.gene015113.t1;Parent=MS.gene015113.t1
chr3.2 exon 85216047 85216247 85216047 ID=MS.gene015113.t1.exon3;Parent=MS.gene015113.t1
chr3.2 CDS 85216047 85216247 85216047 ID=cds.MS.gene015113.t1;Parent=MS.gene015113.t1
chr3.2 exon 85215875 85215963 85215875 ID=MS.gene015113.t1.exon4;Parent=MS.gene015113.t1
chr3.2 CDS 85215875 85215963 85215875 ID=cds.MS.gene015113.t1;Parent=MS.gene015113.t1
Gene Sequence

>MS.gene015113

ATGGATGATTCCACTGATCGGTTTCCCATCGGAATGCGTGTTCTCGCTGTCGACGACGATCCTCCTTCTCTCTTGCTTTTGGAAACTCTCCTCCGATCATGTCAATACCACGGTCTGCTTCTTTTTGATACTTTATGTCCAATTTACGTGTATAAGACTAATGATGATGATATATTTATGTCCAATTTTCATTATACTTTGTACCTGTTATTGCTTGGATTTCAGAATCTCTCTGTTTCTACATAGTTAGACTTTTTTGTTTTTCAAGTATTTCACAATTGCTTTCTGTTCTGCTCCTGGATATGCATTCAAAGTCTACTTTGCTCGTTCTGAATAATATCTATCTTATTTGTTTATGGTTTGGGATTGCAGTAACCACAACTAGTAAAGCAATAACAGCATTGACTATGTTGCGAGAAAACATAGACATGTTTGACCTGGTAATCGCTGAAGTTCACATGCCTGACATGGATGGACTCAAGCTGCTGGAACTTGTAGGACTTGAAATGGATCTTCCTGTCATAAGTAAGTTGGCGAGATCTGTTTTGTAATTTTCAGCTCTTCCTATTTGTTCTGTTTCTTCATTTTCACTTTCATTTATTCATATAATTATTAATTAATGATCGTTGTTATAAATTGTTTGGTTTCAGCGTTGTCTGTATATAGTGATACGGAGCTGGTGATGAAGGCAATTTCCCATGGTGCCCGTGATTTTCTGCTGAAACCTGTGAGATTGGAGGAACTAAGGAACATTTGGCAGCATGTAATTCGGAATAAGAAGTCCCAGTTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTCTTGAAACTGTTAATCAGTTAGGAGTTGACAGTATGTTCTTCACGCTGTCTGCAACACTAAAACAATTTCATTTCTCGAGTTTTAGTCTCATGTTAATGTTGTTTTACTGGCAGAGGCTGTACCCAAAAAGATTTTTGGTTTGATGAATGTTGAAAATATTACAAGGGAAGACGTGGCGACCCATCTCCAGGCACTTTTCTAG
Protein sequence

>MS.gene015113.t1

MDDSTDRFPIGMRVLAVDDDPPSLLLLETLLRSCQYHVTTTSKAITALTMLRENIDMFDLVIAEVHMPDMDGLKLLELVGLEMDLPVITLSVYSDTELVMKAISHGARDFLLKPVRLEELRNIWQHVIRNKKSQFVWSVELHRKFLETVNQLGVDKAVPKKIFGLMNVENITREDVATHLQALF