AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015144

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015144.t1 MTR_5g017470 93.750 288 17 1 1 287 1 288 0.0 540
MS.gene015144.t1 MTR_5g010680 46.094 256 112 6 2 241 17 262 1.22e-63 204
MS.gene015144.t1 MTR_3g101870 42.366 262 118 6 2 234 17 274 1.94e-56 186
MS.gene015144.t1 MTR_1g100777 45.455 209 76 3 2 194 11 197 5.30e-52 172
MS.gene015144.t1 MTR_0020s0020 44.651 215 81 2 2 191 26 227 1.67e-51 172
MS.gene015144.t1 MTR_5g089170 40.164 244 117 6 2 235 18 242 5.99e-49 163
MS.gene015144.t1 MTR_7g091370 43.850 187 81 1 3 189 16 178 5.64e-48 160
MS.gene015144.t1 MTR_5g029680 46.237 186 64 3 1 181 24 178 3.93e-44 157
MS.gene015144.t1 MTR_7g095680 69.474 95 29 0 6 100 46 140 1.63e-43 152
MS.gene015144.t1 MTR_6g043060 58.407 113 44 1 8 117 21 133 1.57e-42 149
MS.gene015144.t1 MTR_8g087540 39.720 214 91 4 5 217 8 184 3.75e-41 147
MS.gene015144.t1 MTR_1g071360 63.636 99 36 0 7 105 30 128 7.02e-40 142
MS.gene015144.t1 MTR_1g071360 63.636 99 36 0 7 105 27 125 1.15e-39 142
MS.gene015144.t1 MTR_4g077970 41.500 200 85 4 9 208 12 179 9.75e-39 142
MS.gene015144.t1 MTR_8g083100 56.757 111 45 1 10 117 23 133 1.33e-38 141
MS.gene015144.t1 MTR_2g100680 62.136 103 39 0 7 109 29 131 1.41e-38 141
MS.gene015144.t1 MTR_3g104550 56.481 108 45 1 6 113 43 148 1.51e-37 137
MS.gene015144.t1 MTR_1g061170 38.208 212 114 4 3 212 43 239 1.71e-37 138
MS.gene015144.t1 MTR_2g100670 54.310 116 50 1 7 119 31 146 1.92e-37 135
MS.gene015144.t1 MTR_2g017890 39.894 188 80 4 9 193 15 172 2.52e-37 136
MS.gene015144.t1 MTR_1g102860 35.961 203 116 3 6 208 37 225 6.67e-37 134
MS.gene015144.t1 MTR_6g086805 58.824 102 42 0 1 102 3 104 8.72e-37 134
MS.gene015144.t1 MTR_2g100670 54.310 116 50 1 7 119 139 254 1.53e-36 135
MS.gene015144.t1 MTR_4g088900 36.139 202 103 5 6 203 30 209 5.54e-35 125
MS.gene015144.t1 MTR_8g105780 44.382 178 65 5 8 181 21 168 3.13e-34 127
MS.gene015144.t1 MTR_2g085115 55.752 113 31 5 70 179 39 135 1.06e-24 97.1
MS.gene015144.t1 MTR_5g047190 45.361 97 46 3 17 106 1 97 6.14e-19 80.1
MS.gene015144.t1 MTR_4g045757 60.345 58 23 0 9 66 14 71 3.47e-18 77.8
MS.gene015144.t1 MTR_3g091000 61.538 52 19 1 154 204 27 78 2.96e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015144.t1 AT4G36990 50.842 297 116 7 2 287 7 284 2.65e-83 252
MS.gene015144.t1 AT5G62020 49.756 205 97 3 2 202 16 218 1.09e-55 182
MS.gene015144.t1 AT4G11660 42.222 270 115 8 2 233 52 318 4.79e-54 180
MS.gene015144.t1 AT1G46264 44.444 216 91 5 4 197 29 237 1.07e-53 178
MS.gene015144.t1 AT2G41690 45.989 187 89 3 7 190 38 215 3.31e-48 161
MS.gene015144.t1 AT1G32330 48.066 181 60 3 6 181 34 185 8.61e-47 163
MS.gene015144.t1 AT1G32330 48.066 181 60 3 6 181 34 185 8.79e-47 163
MS.gene015144.t1 AT4G17750 69.388 98 30 0 5 102 48 145 3.54e-44 157
MS.gene015144.t1 AT2G26150 40.306 196 93 2 5 194 40 217 4.22e-42 148
MS.gene015144.t1 AT2G26150 40.306 196 93 2 5 194 40 217 4.22e-42 148
MS.gene015144.t1 AT3G22830 38.318 214 124 3 5 217 57 263 4.74e-42 149
MS.gene015144.t1 AT4G13980 62.000 100 38 0 10 109 24 123 6.05e-41 147
MS.gene015144.t1 AT3G02990 68.750 96 30 0 5 100 19 114 1.52e-40 146
MS.gene015144.t1 AT3G24520 38.426 216 83 4 8 216 16 188 1.13e-39 141
MS.gene015144.t1 AT5G16820 69.565 92 28 0 9 100 27 118 2.38e-39 143
MS.gene015144.t1 AT5G16820 69.565 92 28 0 9 100 27 118 2.38e-39 143
MS.gene015144.t1 AT5G43840 56.881 109 47 0 5 113 15 123 9.60e-39 137
MS.gene015144.t1 AT3G51910 58.654 104 42 1 6 109 26 128 4.52e-38 135
MS.gene015144.t1 AT5G03720 42.246 187 82 3 9 189 55 221 4.72e-38 139
MS.gene015144.t1 AT5G03720 42.246 187 82 3 9 189 55 221 4.72e-38 139
MS.gene015144.t1 AT5G54070 60.870 92 36 0 8 99 70 161 1.11e-36 133
MS.gene015144.t1 AT3G63350 32.692 260 150 7 3 258 22 260 3.64e-35 128
MS.gene015144.t1 AT4G18880 55.172 116 52 0 5 120 11 126 2.56e-33 126
MS.gene015144.t1 AT1G67970 57.273 110 44 2 8 116 18 125 2.97e-33 125
MS.gene015144.t1 AT5G45710 41.146 192 77 3 5 193 9 167 8.69e-33 123
MS.gene015144.t1 AT5G45710 41.146 192 77 3 5 193 9 167 8.69e-33 123
MS.gene015144.t1 AT4G18870 44.211 95 53 0 2 96 139 233 2.57e-22 94.4
MS.gene015144.t1 AT4G18870 45.745 94 46 3 5 96 9 99 6.20e-20 87.8
MS.gene015144.t1 AT1G77570 40.909 88 47 3 10 93 27 113 1.18e-13 67.4

Find 50 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGCTTGTGCCAGATAAA+TGG 0.251473 5.1:+9693762 MS.gene015144:CDS
TTTGCAAATTCCCATTTATC+TGG 0.289664 5.1:-9693773 None:intergenic
TTGTTGTGCTTAAAATATTT+AGG 0.304096 5.1:-9692345 None:intergenic
GTTTGAAATTGTTTGGTGTT+TGG 0.347895 5.1:+9694230 MS.gene015144:CDS
GGATCCTGCTCCGTCGTTGC+CGG 0.352068 5.1:-9693924 None:intergenic
ATTTATCTGGCACAAGCTTT+CGG 0.357484 5.1:-9693760 None:intergenic
CCGTCGTTGCCGGAGTTTGA+TGG 0.360239 5.1:-9693914 None:intergenic
CGAAACCTTGAGTTGTGAAT+TGG 0.361410 5.1:+9694054 MS.gene015144:CDS
GTTGTTGTTTCCACTGATCC+AGG 0.401148 5.1:-9693977 None:intergenic
TTTGGTGGGCCTCGAGCTAA+AGG 0.405383 5.1:+9694319 MS.gene015144:CDS
ATTATGCGATCGATTTGATC+TGG 0.408543 5.1:-9694139 None:intergenic
GAGGCCCACCAAAGCTCAAT+TGG 0.411379 5.1:-9694309 None:intergenic
AGAGATTGTTTGAAATTGTT+TGG 0.415249 5.1:+9694223 MS.gene015144:CDS
TTGGTGGGCCTCGAGCTAAA+GGG 0.421915 5.1:+9694320 MS.gene015144:CDS
TGAGTTGGAGGAAGAGGTTG+AGG 0.450915 5.1:-9693948 None:intergenic
AAAGCTTGTGCCAGATAAAT+GGG 0.453955 5.1:+9693763 MS.gene015144:CDS
CTCGATAAGTTAACACATTG+AGG 0.469755 5.1:-9694004 None:intergenic
AATGTCGCAGCGGTCGGCGC+CGG 0.469760 5.1:+9692197 None:intergenic
TGGAGAGTTGTCATTGATGC+TGG 0.489530 5.1:-9693894 None:intergenic
ACAACCGTCGTCACAACCCC+TGG 0.491280 5.1:+9693859 MS.gene015144:CDS
TCTAAAAGACAATTTAAATG+TGG 0.501767 5.1:+9694114 MS.gene015144:CDS
CTAAAAGACAATTTAAATGT+GGG 0.505450 5.1:+9694115 MS.gene015144:CDS
TATCGGTGAGGAGGTGTTTG+TGG 0.509612 5.1:-9693814 None:intergenic
TGTGAAGACCAATTGAGCTT+TGG 0.511604 5.1:+9694301 MS.gene015144:CDS
GAAAGAAACAATAAGAAGAG+AGG 0.524546 5.1:+9694277 MS.gene015144:CDS
AACTCCGGCAACGACGGAGC+AGG 0.525429 5.1:+9693920 MS.gene015144:CDS
GTTGGAGGAAGAGGTTGAGG+TGG 0.526221 5.1:-9693945 None:intergenic
TTGTTGTTTCCACTGATCCA+GGG 0.529235 5.1:-9693976 None:intergenic
TGGTGGGCCTCGAGCTAAAG+GGG 0.529649 5.1:+9694321 MS.gene015144:CDS
ACGTGCCAATTCACAACTCA+AGG 0.543571 5.1:-9694059 None:intergenic
CGACGGATGATGTGATATCA+TGG 0.550146 5.1:+9692262 MS.gene015144:CDS
GTTGGTGAAGTTGAAGAAAG+TGG 0.559506 5.1:+9694199 MS.gene015144:CDS
GAAGACCAATTGAGCTTTGG+TGG 0.563611 5.1:+9694304 MS.gene015144:CDS
AAAGAAACAATGCGAAGAGT+TGG 0.565353 5.1:+9694084 MS.gene015144:CDS
GCTTCCAGGGGTTGTGACGA+CGG 0.568930 5.1:-9693863 None:intergenic
TTGTGACGACGGTTGTGAGA+TGG 0.569926 5.1:-9693852 None:intergenic
GACAACTCTCCATCAAACTC+CGG 0.573360 5.1:+9693905 MS.gene015144:CDS
CCATCAAACTCCGGCAACGA+CGG 0.576121 5.1:+9693914 MS.gene015144:CDS
GTTGTGAACATGATGAAAAG+TGG 0.578148 5.1:+9694376 MS.gene015144:CDS
TTTGTTGAAGACGTATCAGA+TGG 0.581317 5.1:+9692227 MS.gene015144:CDS
GGCGTTTGATATCGGTGAGG+AGG 0.622756 5.1:-9693823 None:intergenic
GAATCTGTTCAAAATGCGGT+TGG 0.630106 5.1:+9694181 MS.gene015144:CDS
GTGATATCATGGAGTGAGAG+TGG 0.634834 5.1:+9692273 MS.gene015144:CDS
AAGACCAATTGAGCTTTGGT+GGG 0.635945 5.1:+9694305 MS.gene015144:CDS
GGTGGGCCTCGAGCTAAAGG+GGG 0.641436 5.1:+9694322 MS.gene015144:CDS
GTTGAAGACGTATCAGATGG+TGG 0.648048 5.1:+9692230 MS.gene015144:CDS
TTGTGAATCTGTTCAAAATG+CGG 0.658508 5.1:+9694177 MS.gene015144:CDS
GAACATGATGAAAAGTGGCA+AGG 0.659767 5.1:+9694381 MS.gene015144:CDS
GCAAACGAAAATTTCAAACG+AGG 0.682155 5.1:+9693791 MS.gene015144:CDS
TGCGGCGTTTGATATCGGTG+AGG 0.683931 5.1:-9693826 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTATTTTTATTTTAA+TGG + chr5.1:9692744-9692763 MS.gene015144:intron 0.0%
!!! AATTATTTTTTAGCAATTTT+TGG + chr5.1:9692531-9692550 MS.gene015144:intron 10.0%
!!! ATTATTTTTTAGCAATTTTT+GGG + chr5.1:9692532-9692551 MS.gene015144:intron 10.0%
!!! TATTTTAACAAATAGTAAAT+AGG - chr5.1:9692904-9692923 None:intergenic 10.0%
!!! TTCTAAAAAAAAAAAAACAT+TGG - chr5.1:9692505-9692524 None:intergenic 10.0%
!! AAATTATAATACACTTTCTT+AGG - chr5.1:9693207-9693226 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr5.1:9693439-9693458 MS.gene015144:intron 15.0%
!! AATTATAATACACTTTCTTA+GGG - chr5.1:9693206-9693225 None:intergenic 15.0%
!! AGAAAAAATTATTATTGCAT+TGG + chr5.1:9693526-9693545 MS.gene015144:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+CGG + chr5.1:9693463-9693482 MS.gene015144:intron 15.0%
!!! TGTTCAAATATTTTGATTTT+AGG + chr5.1:9692786-9692805 MS.gene015144:intron 15.0%
!!! TTATTTTTTAGCAATTTTTG+GGG + chr5.1:9692533-9692552 MS.gene015144:intron 15.0%
!! AAACTAACCAATAGTTAATA+AGG - chr5.1:9693449-9693468 None:intergenic 20.0%
!! AATTATCTTAAGCTAATCAA+AGG - chr5.1:9692474-9692493 None:intergenic 20.0%
!! CTAAAAGACAATTTAAATGT+GGG + chr5.1:9694115-9694134 MS.gene015144:CDS 20.0%
!! TCTAAAAGACAATTTAAATG+TGG + chr5.1:9694114-9694133 MS.gene015144:CDS 20.0%
!! TTGTTGTGCTTAAAATATTT+AGG - chr5.1:9692348-9692367 None:intergenic 20.0%
!!! ATGTGTAAACCAATTTTTTA+AGG + chr5.1:9693242-9693261 MS.gene015144:intron 20.0%
! AAAAAAAAAACATTGGCAGT+TGG - chr5.1:9692498-9692517 None:intergenic 25.0%
! CATGTTCATGAAAAACTAAA+AGG - chr5.1:9692428-9692447 None:intergenic 25.0%
!! AGAGATTGTTTGAAATTGTT+TGG + chr5.1:9694223-9694242 MS.gene015144:CDS 25.0%
!!! GATGATTTACTTTTAGTGTT+CGG + chr5.1:9693304-9693323 MS.gene015144:intron 25.0%
!!! TAGGTTTTATCTTAACACTT+TGG + chr5.1:9693691-9693710 MS.gene015144:intron 25.0%
AGAAAACGTGCTAATATTTG+AGG - chr5.1:9693667-9693686 None:intergenic 30.0%
ATGAAAAACTAAAAGGAGAG+AGG - chr5.1:9692421-9692440 None:intergenic 30.0%
CAATACTTTCCTTCCAATTA+GGG - chr5.1:9692876-9692895 None:intergenic 30.0%
CACATCTTTACAATTATGCA+CGG - chr5.1:9693275-9693294 None:intergenic 30.0%
GAAAACGTGCTAATATTTGA+GGG - chr5.1:9693666-9693685 None:intergenic 30.0%
GAAAGAAACAATAAGAAGAG+AGG + chr5.1:9694277-9694296 MS.gene015144:CDS 30.0%
TGAAAAACTAAAAGGAGAGA+GGG - chr5.1:9692420-9692439 None:intergenic 30.0%
TGAGAAAATGCTAATTACCA+TGG + chr5.1:9693717-9693736 MS.gene015144:intron 30.0%
TGATACGTCTTCAACAAAAA+CGG - chr5.1:9692225-9692244 None:intergenic 30.0%
TTGGTAGATCACAATGAATT+AGG + chr5.1:9692982-9693001 MS.gene015144:intron 30.0%
TTGTGAATCTGTTCAAAATG+CGG + chr5.1:9694177-9694196 MS.gene015144:CDS 30.0%
TTTGCAAATTCCCATTTATC+TGG - chr5.1:9693776-9693795 None:intergenic 30.0%
! AGTGTTCAATGGTTTACTTT+TGG + chr5.1:9693627-9693646 MS.gene015144:intron 30.0%
! ATTAGCACGTTTTCTTTTCT+AGG + chr5.1:9693672-9693691 MS.gene015144:intron 30.0%
! CTACCAAGTAGATTCATTTT+CGG - chr5.1:9692969-9692988 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr5.1:9693357-9693376 None:intergenic 30.0%
!! ATTTACTTTTAGTGTTCGGA+TGG + chr5.1:9693308-9693327 MS.gene015144:intron 30.0%
!! GTTTGAAATTGTTTGGTGTT+TGG + chr5.1:9694230-9694249 MS.gene015144:CDS 30.0%
!!! AAGCGACACTTATTTTGAAA+CGG + chr5.1:9693592-9693611 MS.gene015144:intron 30.0%
!!! AATTTTTGGGGTTCATAACA+AGG + chr5.1:9692545-9692564 MS.gene015144:intron 30.0%
!!! GAGAGTATTTTAGTGTTCAA+TGG + chr5.1:9693616-9693635 MS.gene015144:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr5.1:9693358-9693377 MS.gene015144:intron 30.0%
AAAGAAACAATGCGAAGAGT+TGG + chr5.1:9694084-9694103 MS.gene015144:CDS 35.0%
AAAGCTTGTGCCAGATAAAT+GGG + chr5.1:9693763-9693782 MS.gene015144:CDS 35.0%
ACACCGAAAATGAATCTACT+TGG + chr5.1:9692963-9692982 MS.gene015144:intron 35.0%
AGTAGAATACCCTAATTGGA+AGG + chr5.1:9692864-9692883 MS.gene015144:intron 35.0%
ATTTATCTGGCACAAGCTTT+CGG - chr5.1:9693763-9693782 None:intergenic 35.0%
CCAATACTTTCCTTCCAATT+AGG - chr5.1:9692877-9692896 None:intergenic 35.0%
CTCGATAAGTTAACACATTG+AGG - chr5.1:9694007-9694026 None:intergenic 35.0%
GCAAACGAAAATTTCAAACG+AGG + chr5.1:9693791-9693810 MS.gene015144:CDS 35.0%
GGACATCGACCTTAAAAAAT+TGG - chr5.1:9693254-9693273 None:intergenic 35.0%
GTTGTGAACATGATGAAAAG+TGG + chr5.1:9694376-9694395 MS.gene015144:CDS 35.0%
TTTGTTGAAGACGTATCAGA+TGG + chr5.1:9692227-9692246 MS.gene015144:CDS 35.0%
! ACCATGGTTTTTGAATTTGC+AGG + chr5.1:9693733-9693752 MS.gene015144:intron 35.0%
! CCAATTAGGGTATTCTACTT+CGG - chr5.1:9692863-9692882 None:intergenic 35.0%
! CCATGGTTTTTGAATTTGCA+GGG + chr5.1:9693734-9693753 MS.gene015144:intron 35.0%
! CCTAATTGGAAGGAAAGTAT+TGG + chr5.1:9692874-9692893 MS.gene015144:intron 35.0%
! GGTTTTCAATCTTTTCGTGT+AGG - chr5.1:9692835-9692854 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr5.1:9693488-9693507 MS.gene015144:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr5.1:9693492-9693511 MS.gene015144:intron 35.0%
!! ATTATGCGATCGATTTGATC+TGG - chr5.1:9694142-9694161 None:intergenic 35.0%
!!! AACGACACTCATTTTGAAAC+GGG - chr5.1:9693356-9693375 None:intergenic 35.0%
!!! GAAACATGCTGATTTTGCAA+GGG + chr5.1:9692314-9692333 MS.gene015144:CDS 35.0%
CCCTGCAAATTCAAAAACCA+TGG - chr5.1:9693737-9693756 None:intergenic 40.0%
CCGAAGTAGAATACCCTAAT+TGG + chr5.1:9692860-9692879 MS.gene015144:intron 40.0%
GAAAGCTTGTGCCAGATAAA+TGG + chr5.1:9693762-9693781 MS.gene015144:CDS 40.0%
GAACATGATGAAAAGTGGCA+AGG + chr5.1:9694381-9694400 MS.gene015144:CDS 40.0%
GAATCTGTTCAAAATGCGGT+TGG + chr5.1:9694181-9694200 MS.gene015144:CDS 40.0%
TGTGAAGACCAATTGAGCTT+TGG + chr5.1:9694301-9694320 MS.gene015144:CDS 40.0%
! AAGACCAATTGAGCTTTGGT+GGG + chr5.1:9694305-9694324 MS.gene015144:CDS 40.0%
! CGAAACCTTGAGTTGTGAAT+TGG + chr5.1:9694054-9694073 MS.gene015144:CDS 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr5.1:9693491-9693510 MS.gene015144:intron 40.0%
! GTTGGTGAAGTTGAAGAAAG+TGG + chr5.1:9694199-9694218 MS.gene015144:CDS 40.0%
!! TTGTTGTTTCCACTGATCCA+GGG - chr5.1:9693979-9693998 None:intergenic 40.0%
!!! GGAAACATGCTGATTTTGCA+AGG + chr5.1:9692313-9692332 MS.gene015144:CDS 40.0%
!!! GTGGTGAAAGTTTTGTTGTG+TGG + chr5.1:9692292-9692311 MS.gene015144:CDS 40.0%
!!! GTTTTTTGAGTTGGAGGAAG+AGG - chr5.1:9693957-9693976 None:intergenic 40.0%
!!! TGATCCAGGGTTTTTTGAGT+TGG - chr5.1:9693966-9693985 None:intergenic 40.0%
ACGTGCCAATTCACAACTCA+AGG - chr5.1:9694062-9694081 None:intergenic 45.0%
CGACGGATGATGTGATATCA+TGG + chr5.1:9692262-9692281 MS.gene015144:CDS 45.0%
CTCAAAAAACCCTGGATCAG+TGG + chr5.1:9693967-9693986 MS.gene015144:CDS 45.0%
GACAACTCTCCATCAAACTC+CGG + chr5.1:9693905-9693924 MS.gene015144:CDS 45.0%
GGGTATTCTACTTCGGTAGA+AGG - chr5.1:9692856-9692875 None:intergenic 45.0%
GTGATATCATGGAGTGAGAG+TGG + chr5.1:9692273-9692292 MS.gene015144:CDS 45.0%
GTTGAAGACGTATCAGATGG+TGG + chr5.1:9692230-9692249 MS.gene015144:CDS 45.0%
TCCTCCAACTCAAAAAACCC+TGG + chr5.1:9693959-9693978 MS.gene015144:CDS 45.0%
TGGAGAGTTGTCATTGATGC+TGG - chr5.1:9693897-9693916 None:intergenic 45.0%
! GAAGACCAATTGAGCTTTGG+TGG + chr5.1:9694304-9694323 MS.gene015144:CDS 45.0%
! GGTTTTGCGGCGTTTGATAT+CGG - chr5.1:9693834-9693853 None:intergenic 45.0%
!! ACGGTTGTGAGATGGTTTTG+CGG - chr5.1:9693847-9693866 None:intergenic 45.0%
!! GTTGTTGTTTCCACTGATCC+AGG - chr5.1:9693980-9693999 None:intergenic 45.0%
!!! CTGGTTTTTTCAGCTTCCAG+GGG - chr5.1:9693878-9693897 None:intergenic 45.0%
!!! GACACTCATTTTGAAACGGG+AGG - chr5.1:9693353-9693372 None:intergenic 45.0%
!!! GATGGTGGATGATTTTGCGA+CGG + chr5.1:9692245-9692264 MS.gene015144:CDS 45.0%
!!! GCTGGTTTTTTCAGCTTCCA+GGG - chr5.1:9693879-9693898 None:intergenic 45.0%
!!! TCCAGGGTTTTTTGAGTTGG+AGG - chr5.1:9693963-9693982 None:intergenic 45.0%
!!! TGCTGGTTTTTTCAGCTTCC+AGG - chr5.1:9693880-9693899 None:intergenic 45.0%
GTCTTCAACAAAAACGGCGC+CGG - chr5.1:9692219-9692238 None:intergenic 50.0%
TTGTGACGACGGTTGTGAGA+TGG - chr5.1:9693855-9693874 None:intergenic 50.0%
! TGAGTTGGAGGAAGAGGTTG+AGG - chr5.1:9693951-9693970 None:intergenic 50.0%
! TTGTTACCCCCTTTAGCTCG+AGG - chr5.1:9694331-9694350 None:intergenic 50.0%
!! TATCGGTGAGGAGGTGTTTG+TGG - chr5.1:9693817-9693836 None:intergenic 50.0%
CCATCAAACTCCGGCAACGA+CGG + chr5.1:9693914-9693933 MS.gene015144:CDS 55.0%
GAGGCCCACCAAAGCTCAAT+TGG - chr5.1:9694312-9694331 None:intergenic 55.0%
GGCGTTTGATATCGGTGAGG+AGG - chr5.1:9693826-9693845 None:intergenic 55.0%
GTTGGAGGAAGAGGTTGAGG+TGG - chr5.1:9693948-9693967 None:intergenic 55.0%
TGCGGCGTTTGATATCGGTG+AGG - chr5.1:9693829-9693848 None:intergenic 55.0%
! TTGGTGGGCCTCGAGCTAAA+GGG + chr5.1:9694320-9694339 MS.gene015144:CDS 55.0%
! TTTGGTGGGCCTCGAGCTAA+AGG + chr5.1:9694319-9694338 MS.gene015144:CDS 55.0%
ACAACCGTCGTCACAACCCC+TGG + chr5.1:9693859-9693878 MS.gene015144:CDS 60.0%
CCGTCGTTGCCGGAGTTTGA+TGG - chr5.1:9693917-9693936 None:intergenic 60.0%
GCTTCCAGGGGTTGTGACGA+CGG - chr5.1:9693866-9693885 None:intergenic 60.0%
! TGGTGGGCCTCGAGCTAAAG+GGG + chr5.1:9694321-9694340 MS.gene015144:CDS 60.0%
AACTCCGGCAACGACGGAGC+AGG + chr5.1:9693920-9693939 MS.gene015144:CDS 65.0%
GGATCCTGCTCCGTCGTTGC+CGG - chr5.1:9693927-9693946 None:intergenic 65.0%
GGTGGGCCTCGAGCTAAAGG+GGG + chr5.1:9694322-9694341 MS.gene015144:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 9692198 9694414 9692198 ID=MS.gene015144
chr5.1 mRNA 9692198 9694414 9692198 ID=MS.gene015144.t1;Parent=MS.gene015144
chr5.1 exon 9692198 9692401 9692198 ID=MS.gene015144.t1.exon1;Parent=MS.gene015144.t1
chr5.1 CDS 9692198 9692401 9692198 ID=cds.MS.gene015144.t1;Parent=MS.gene015144.t1
chr5.1 exon 9693755 9694414 9693755 ID=MS.gene015144.t1.exon2;Parent=MS.gene015144.t1
chr5.1 CDS 9693755 9694414 9693755 ID=cds.MS.gene015144.t1;Parent=MS.gene015144.t1
Gene Sequence

>MS.gene015144

ATGTCGCAGCGGTCGGCGCCGGCGCCGTTTTTGTTGAAGACGTATCAGATGGTGGATGATTTTGCGACGGATGATGTGATATCATGGAGTGAGAGTGGTGAAAGTTTTGTTGTGTGGAAACATGCTGATTTTGCAAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTTGTTCGTCAGCTCAATACTTATGTAAGTTCTTTATTTCCCTCTCTCCTTTTAGTTTTTCATGAACATGATTCATTCTTGCATGTTTTGCAGCCTTTGATTAGCTTAAGATAATTTCCAACTGCCAATGTTTTTTTTTTTTTAGAAAATACAAATTATTTTTTAGCAATTTTTGGGGTTCATAACAAGGTAATTTGTTTGTTTATGCTTTACTTTTTTCACAAACAAGCAAGTATAAAATGACATATGTTGTTCACACAAGCAAGTCTTGTACGAACACAACTACAAATCAAAAGTATTTAAATACACTTATATAAAATAAAAATATTAAAAGAAGATAAAATTAAATGATGTTAATTGATGTGAATAAATTATTTTTATTTTAATGGATTTTATTTTGTATGAGTATGTTCAAATATTTTGATTTTAGGTTGTTTCTATAGAAAATTTGCTGCCTACACGAAAAGATTGAAAACCTTCTACCGAAGTAGAATACCCTAATTGGAAGGAAAGTATTGGTCATCCTATTTACTATTTGTTAAAATATCAAACAAGTGATTTTCTTTTATAGAGTTCAACTTTGATACACCGAAAATGAATCTACTTGGTAGATCACAATGAATTAGGTGTGATGTTAGATGTAATTAAGTCAATCGTTTTCAATAATTTTACTATTATGTTTGATTTTATAAATATATATTGATATTGTATATCAATTAAATCTATTAAGTCTTCAACTTCTACGCATTGACATTATAGAATTGTTTTACATATAATCAATTAAATTACATCATATAAACATTTGTAGAGATATTTTATAAATTGCCCTAAGAAAGTGTATTATAATTTGATTTGATTGTATGCATGTGTAAACCAATTTTTTAAGGTCGATGTCCGTGCATAATTGTAAAGATGTGTTATGTAAAGATGATTTACTTTTAGTGTTCGGATGGTAGATCACAATCAATTACTCCTCCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGCAATGATTAAAAGAAAGAGAATGATTATTTTACTAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTCGGAAGTAGTGTGCAGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAATTATTATTGCATTGGAAACTGAAAGCGACATTCATTTTGAAACAATTTTTTTTGACTAAAGCGACACTTATTTTGAAACGGAGAGAGTATTTTAGTGTTCAATGGTTTACTTTTGGAAAGATGTTTTTTCCCTCAAATATTAGCACGTTTTCTTTTCTAGGTTTTATCTTAACACTTTGGAAATGAGAAAATGCTAATTACCATGGTTTTTGAATTTGCAGGGTTTCCGAAAGCTTGTGCCAGATAAATGGGAATTTGCAAACGAAAATTTCAAACGAGGCCACAAACACCTCCTCACCGATATCAAACGCCGCAAAACCATCTCACAACCGTCGTCACAACCCCTGGAAGCTGAAAAAACCAGCATCAATGACAACTCTCCATCAAACTCCGGCAACGACGGAGCAGGATCCACCTCAACCTCTTCCTCCAACTCAAAAAACCCTGGATCAGTGGAAACAACAACACTTCCTCAATGTGTTAACTTATCGAGCGAAAATGAGAAACTAAAAAAAGACAACGAAACCTTGAGTTGTGAATTGGCACGTGCAAAGAAACAATGCGAAGAGTTGGTGACTTTTCTAAAAGACAATTTAAATGTGGGTCCAGATCAAATCGATCGCATAATGAAGCAACAAGAAAATTGTGAATCTGTTCAAAATGCGGTTGGTGAAGTTGAAGAAAGTGGAAGAGATTGTTTGAAATTGTTTGGTGTTTGGTTGAAAAAAGAAAATTACACAAAAGAAAGAAACAATAAGAAGAGAGGATGTGAAGACCAATTGAGCTTTGGTGGGCCTCGAGCTAAAGGGGGTAACAATGCTGTTGACTTTAGTGCTGTTAATGTTGTGAACATGATGAAAAGTGGCAAGGTTTGTAACTGA
Protein sequence

>MS.gene015144.t1

MSQRSAPAPFLLKTYQMVDDFATDDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDKWEFANENFKRGHKHLLTDIKRRKTISQPSSQPLEAEKTSINDNSPSNSGNDGAGSTSTSSSNSKNPGSVETTTLPQCVNLSSENEKLKKDNETLSCELARAKKQCEELVTFLKDNLNVGPDQIDRIMKQQENCESVQNAVGEVEESGRDCLKLFGVWLKKENYTKERNNKKRGCEDQLSFGGPRAKGGNNAVDFSAVNVVNMMKSGKVCN