AlfalfaGEDB | MS.gene015170

M. sativa cultivar XinJiangDaYe / MS.gene015170

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015170.t1	XP_003611714.1	94.5	311	16	1	38	347	34	344	7.60E-153	550.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015170.t1	Q9FUA4	51.8	226	82	5	74	296	156	357	1.4e-41	171.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015170.t1	G7K6L5	94.5	311	16	1	38	347	34	344	5.5e-153	550.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene015170.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015170.t1	MTR_5g017040	94.627	335	17	1	14	347	10	344	0.0	604
MS.gene015170.t1	MTR_1g019240	81.319	91	16	1	97	186	73	163	4.46e-42	147
MS.gene015170.t1	MTR_1g084980	57.983	119	49	1	79	197	434	551	1.83e-33	131
MS.gene015170.t1	MTR_7g099540	60.345	116	39	3	72	183	213	325	7.50e-32	124
MS.gene015170.t1	MTR_7g099540	57.500	120	42	3	72	183	213	331	7.67e-30	119
MS.gene015170.t1	MTR_1g069155	59.813	107	38	3	77	183	289	390	2.30e-29	118
MS.gene015170.t1	MTR_3g449770	48.551	138	60	5	109	243	310	439	2.57e-26	109
MS.gene015170.t1	MTR_7g111320	55.140	107	42	1	104	204	428	534	5.44e-24	103
MS.gene015170.t1	MTR_7g110810	50.549	91	42	1	88	178	185	272	5.47e-22	95.9
MS.gene015170.t1	MTR_4g131160	35.915	142	71	2	34	172	136	260	3.68e-19	88.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015170.t1	AT4G36930	49.099	222	86	5	78	296	160	357	2.93e-47	164
MS.gene015170.t1	AT5G67110	52.976	168	56	5	16	181	14	160	2.18e-37	134
MS.gene015170.t1	AT1G09530	60.177	113	40	3	82	191	311	421	1.78e-31	124
MS.gene015170.t1	AT1G09530	60.177	113	40	3	82	191	311	421	1.78e-31	124
MS.gene015170.t1	AT1G09530	60.177	113	40	3	82	191	311	421	1.78e-31	124
MS.gene015170.t1	AT1G09530	60.177	113	40	3	82	191	311	421	1.78e-31	124
MS.gene015170.t1	AT1G09530	60.177	113	40	3	82	191	311	421	1.78e-31	124
MS.gene015170.t1	AT1G09530	60.177	113	40	3	82	191	311	421	1.78e-31	124
MS.gene015170.t1	AT2G20180	64.516	93	23	1	80	172	189	271	6.82e-30	118
MS.gene015170.t1	AT2G20180	64.516	93	23	1	80	172	189	271	6.82e-30	118

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Find 72 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACAAACCTGTACT+TGG	0.469577	5.1:-9342986	None:intergenic
AACAACACAGAAACTTCTTT+CGG	0.333925	5.1:+9343829	MS.gene015170:CDS
AACAAGTCTTCGCCGTGTAT+TGG	0.455886	5.1:-9343998	None:intergenic
AACATAACAACAACATGGCT+CGG	0.564736	5.1:+9341871	MS.gene015170:CDS
AAGAAGATGAAGCTGAACGA+AGG	0.671619	5.1:-9341953	None:intergenic
AAGCCTTCATGAAAGTACAT+AGG	0.613283	5.1:-9343625	None:intergenic
AAGGAGTTGTCTAGGGGATG+AGG	0.512056	5.1:-9343730	None:intergenic
AATCTATTAGGCGGTTCTCA+AGG	0.591562	5.1:+9344058	MS.gene015170:CDS
AATGGAACATAACAACAACA+TGG	0.706557	5.1:+9341866	None:intergenic
AATGTATCTTCCTCTTCTGT+TGG	0.387184	5.1:+9342056	MS.gene015170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATACAAACCTGTACT+TGG	-	chr5.1:9342989-9343008	None:intergenic	30.0%
AACAACACAGAAACTTCTTT+CGG	+	chr5.1:9343829-9343848	MS.gene015170:CDS	30.0%
ACGTCTTAAATTTGAATCGT+CGG	+	chr5.1:9343296-9343315	MS.gene015170:intron	30.0%
AGAGAATTACCAACATTTGA+AGG	+	chr5.1:9343364-9343383	MS.gene015170:intron	30.0%
ATAAAGTAAGGAGTTGTCTA+GGG	-	chr5.1:9343740-9343759	None:intergenic	30.0%
ATTCTAAATACTTCTCTCGA+CGG	+	chr5.1:9343251-9343270	MS.gene015170:intron	30.0%
CTGCGATGTAAATATAATGT+TGG	-	chr5.1:9344280-9344299	None:intergenic	30.0%
TAGATTGGATGCATAAAGTA+AGG	-	chr5.1:9343752-9343771	None:intergenic	30.0%
TATTTACATCGCAGTTAAGT+AGG	+	chr5.1:9344286-9344305	MS.gene015170:CDS	30.0%
TTATGCACCTTGTTAGAATT+TGG	-	chr5.1:9342822-9342841	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	9341867	9344311	9341867	ID=MS.gene015170
chr5.1	mRNA	9341867	9344311	9341867	ID=MS.gene015170.t1;Parent=MS.gene015170
chr5.1	exon	9341867	9342130	9341867	ID=MS.gene015170.t1.exon1;Parent=MS.gene015170.t1
chr5.1	CDS	9341867	9342130	9341867	ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1
chr5.1	exon	9342565	9342672	9342565	ID=MS.gene015170.t1.exon2;Parent=MS.gene015170.t1
chr5.1	CDS	9342565	9342672	9342565	ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1
chr5.1	exon	9342768	9342833	9342768	ID=MS.gene015170.t1.exon3;Parent=MS.gene015170.t1
chr5.1	CDS	9342768	9342833	9342768	ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1
chr5.1	exon	9342930	9342995	9342930	ID=MS.gene015170.t1.exon4;Parent=MS.gene015170.t1
chr5.1	CDS	9342930	9342995	9342930	ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1
chr5.1	exon	9343592	9343903	9343592	ID=MS.gene015170.t1.exon5;Parent=MS.gene015170.t1
chr5.1	CDS	9343592	9343903	9343592	ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1
chr5.1	exon	9343998	9344079	9343998	ID=MS.gene015170.t1.exon6;Parent=MS.gene015170.t1
chr5.1	CDS	9343998	9344079	9343998	ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1
chr5.1	exon	9344166	9344311	9344166	ID=MS.gene015170.t1.exon7;Parent=MS.gene015170.t1
chr5.1	CDS	9344166	9344311	9344166	ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1

Gene Sequence

>MS.gene015170

ATGGAACATAACAACAACATGGCTCGGTTTGACAAAAACATGTCCTCTTCACAAGACGAAATCTCTCTTTTTCTTCATCAAATTCTCCTTCGTTCAGCTTCATCTTCTTCCATGCCAGGATCCATTAACCAGCTTCAAGATGGAAAGATCTCAGCCTTTGATTCAACTTCTAGACCAAACCATGCTTTAAATGTATCTTCCTCTTCTGTTGGAGCAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGTATTATTCATTACTATTTTCTACTCTTCAAGTTTCAACCTTTCTTTTTATGTATTCATGTGGGGTAGCTAGTTTCTATATTTTCTTCATAACAAATTATCTTTTGTTAATTTTGTTAGAATACTATCATAAAATAATGACACTGTTTTTATTTTTTTTAATTTTTTACTCAATGTCTTGGAAAAGGTTCTTGGTTTTTAATGCAAGCAATAAAACATGGTAATTTATTGTTTGTATGTGTATTTTGGCTATGTCTCTTGACTCAAATTGTTAACTGAGATTGTTGTATGTCCTAAAAAGAATAATACTTTGATTCTTGGTCTGTTTCTAGTGTGGATCTTTGTATGCTATTTTGATTTAGATGAATTTGTCGTTTTGTTGTTTTTGTTGGGATTTGATTTTGGGGTTAAAAATTGCATCTTTTAAATTTGCAGGAGGGTGTGGAAGCATTGATTGAAGAAGTTCCAACAAAGTCAGCTGGTGCTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAATTTGTCAGAAAAGGTTTGTCAATTTTTGTTGATTGACGTTTCTTGATTTCAATTTTATTTGTGGTTATGTAATTTTGCTTGTGGATTTTTGTGGGACTTGTTGAGCAGAGAAGAAGGAGTAGGATTAATGAGAAAATGAAAGCTTTACAAAATCTAATTCCAAATTCTAACAAGGTGCATAAAATTTTTAAACCATAGTTTAAAGGGTGTTTTTTTATTTTAATTTAGAATTATTCTTAATGTAGTGGATTGTTTCCATGTGTGTCACAGACTGATAAAGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGGTTTGTATCTTTTTTATTTACTGCACTTTTGTCCTATTTTGGGAAGTTGAGAGCTTCATTTATCCTCAACTTAAACCCAGCATCTCCACTTTTCATTTTTTTACATAGGTCCCACCCTTACACTCATTTTTACTTTTTACAACACAACCACCCTATTCTCAGCCCATCATCAATACTAAATATTTATGAAGCATTGACACATACGCCAGTGTCTTACAAGGCACCAAAACTAATTTGAGAAGATGTAAGTAATGGATTCTAAATACTTCTCTCGACGGCTGACAGTGACACATGTCAGACACGTCTTAAATTTGAATCGTCGGTGCTACATAGATTAATATTGATTACAATTGGAGATTTTATGATATAGAGAATTACCAACATTTGAAGGATAATTAGTGGAAATACAACATGAAATGTTTGTCACTTTTCAATTAAGCAAATTGGAATATTGTTGTGTTACTACGGAGTATCTTGTTAAATCAAAGTTTATTATGTTTTTTAAAATATAAGAAAATTGACCTTGTTAGATTGAATTTGCTATCAAAGGTAGCTTAATTCCTGAACTGTATGTGATCCTTATGAGGATATTTCAGATGCTGTCATTGAGAAATGGATTGAGTTTGCATCCTATGTACTTTCATGAAGGCTTACATTCTCTGCCTTTGTCTCGGATGAGTACGGAGTTGAGTGAAGGAAACGGTTCTAACCCTTTAAATATGACATCTACTCTGCCTCATCCCCTAGACAACTCCTTACTTTATGCATCCAATCTACCTAACAAAAACACATTGTCGAGTCAGCCATCAATGTCTTCCTATCCTTCATATATTAACAACACAGAAACTTCTTTCGGGGTGGAATCTGGAATCCCAGCACAGAAAAAACGTCTCCAACAATCTTCAGAGGTAAGCCAATCCTGCAAACTTGAATGTCGTATTTAGTTAAATTTTGAATGTATGATGTTAATCATTGTTACATGTTTTCTCTTGATTTGTGAAGCCAATACACGGCGAAGACTTGTTGCAGCACCAGCAATTGAATGCAATAAATTCTTTTACCAATCTATTAGGCGGTTCTCAAGGTGAGCGCATATTTCTTCTTTTCTAACTCAATGTAACTGTTCCACTTTTATACCACAATCTCACGCTCCTTGTTTCATAACTTCAGCTGTCAAAGAATTTCAGTCGGGCGCAATGGCTACACCTACTACTAACAATACTTTGCAAACTTGTGTTGCCGGAAGAGATCAGTCAGGAGCGGTCATGAGAAATAGTGAGCCCAACATTATATTTACATCGCAGTTAAGTAGGTAA

Protein sequence

>MS.gene015170.t1

MEHNNNMARFDKNMSSSQDEISLFLHQILLRSASSSSMPGSINQLQDGKISAFDSTSRPNHALNVSSSSVGAGGLSGNDTDEYDCESEEGVEALIEEVPTKSAGASRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMYFHEGLHSLPLSRMSTELSEGNGSNPLNMTSTLPHPLDNSLLYASNLPNKNTLSSQPSMSSYPSYINNTETSFGVESGIPAQKKRLQQSSEPIHGEDLLQHQQLNAINSFTNLLGGSQAVKEFQSGAMATPTTNNTLQTCVAGRDQSGAVMRNSEPNIIFTSQLSR