Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015170.t1 | XP_003611714.1 | 94.5 | 311 | 16 | 1 | 38 | 347 | 34 | 344 | 7.60E-153 | 550.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015170.t1 | Q9FUA4 | 51.8 | 226 | 82 | 5 | 74 | 296 | 156 | 357 | 1.4e-41 | 171.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015170.t1 | G7K6L5 | 94.5 | 311 | 16 | 1 | 38 | 347 | 34 | 344 | 5.5e-153 | 550.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene015170.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015170.t1 | MTR_5g017040 | 94.627 | 335 | 17 | 1 | 14 | 347 | 10 | 344 | 0.0 | 604 |
MS.gene015170.t1 | MTR_1g019240 | 81.319 | 91 | 16 | 1 | 97 | 186 | 73 | 163 | 4.46e-42 | 147 |
MS.gene015170.t1 | MTR_1g084980 | 57.983 | 119 | 49 | 1 | 79 | 197 | 434 | 551 | 1.83e-33 | 131 |
MS.gene015170.t1 | MTR_7g099540 | 60.345 | 116 | 39 | 3 | 72 | 183 | 213 | 325 | 7.50e-32 | 124 |
MS.gene015170.t1 | MTR_7g099540 | 57.500 | 120 | 42 | 3 | 72 | 183 | 213 | 331 | 7.67e-30 | 119 |
MS.gene015170.t1 | MTR_1g069155 | 59.813 | 107 | 38 | 3 | 77 | 183 | 289 | 390 | 2.30e-29 | 118 |
MS.gene015170.t1 | MTR_3g449770 | 48.551 | 138 | 60 | 5 | 109 | 243 | 310 | 439 | 2.57e-26 | 109 |
MS.gene015170.t1 | MTR_7g111320 | 55.140 | 107 | 42 | 1 | 104 | 204 | 428 | 534 | 5.44e-24 | 103 |
MS.gene015170.t1 | MTR_7g110810 | 50.549 | 91 | 42 | 1 | 88 | 178 | 185 | 272 | 5.47e-22 | 95.9 |
MS.gene015170.t1 | MTR_4g131160 | 35.915 | 142 | 71 | 2 | 34 | 172 | 136 | 260 | 3.68e-19 | 88.2 |
MS.gene015170.t1 | MTR_4g131160 | 36.029 | 136 | 67 | 2 | 40 | 172 | 145 | 263 | 8.76e-19 | 87.0 |
MS.gene015170.t1 | MTR_1g080890 | 46.250 | 80 | 43 | 0 | 93 | 172 | 178 | 257 | 3.08e-17 | 82.0 |
MS.gene015170.t1 | MTR_1g084980 | 48.387 | 93 | 44 | 2 | 79 | 171 | 434 | 522 | 3.52e-16 | 80.1 |
MS.gene015170.t1 | MTR_5g005110 | 44.048 | 84 | 45 | 1 | 101 | 184 | 219 | 300 | 1.19e-15 | 77.4 |
MS.gene015170.t1 | MTR_8g099880 | 32.353 | 170 | 86 | 8 | 95 | 243 | 135 | 296 | 1.16e-14 | 74.3 |
MS.gene015170.t1 | MTR_3g498825 | 41.758 | 91 | 48 | 3 | 94 | 183 | 136 | 222 | 1.68e-13 | 70.9 |
MS.gene015170.t1 | MTR_3g103030 | 39.535 | 86 | 50 | 1 | 98 | 183 | 221 | 304 | 3.38e-13 | 69.7 |
MS.gene015170.t1 | MTR_1g106480 | 37.000 | 100 | 51 | 2 | 76 | 172 | 43 | 133 | 4.19e-13 | 66.6 |
MS.gene015170.t1 | MTR_1g106470 | 37.179 | 78 | 49 | 0 | 107 | 184 | 195 | 272 | 6.00e-13 | 68.9 |
MS.gene015170.t1 | MTR_3g116770 | 49.231 | 65 | 32 | 1 | 110 | 173 | 193 | 257 | 6.86e-13 | 69.3 |
MS.gene015170.t1 | MTR_3g116770 | 49.231 | 65 | 32 | 1 | 110 | 173 | 193 | 257 | 7.14e-13 | 69.3 |
MS.gene015170.t1 | MTR_1g106460 | 38.824 | 85 | 52 | 0 | 115 | 199 | 245 | 329 | 8.40e-13 | 68.9 |
MS.gene015170.t1 | MTR_1g018090 | 40.244 | 82 | 47 | 1 | 102 | 183 | 270 | 349 | 9.46e-13 | 68.9 |
MS.gene015170.t1 | MTR_7g053410 | 49.231 | 65 | 32 | 1 | 110 | 173 | 319 | 383 | 1.14e-12 | 69.3 |
MS.gene015170.t1 | MTR_7g053410 | 49.231 | 65 | 32 | 1 | 110 | 173 | 319 | 383 | 1.22e-12 | 68.9 |
MS.gene015170.t1 | MTR_8g065740 | 49.231 | 65 | 32 | 1 | 110 | 173 | 307 | 371 | 1.23e-12 | 68.9 |
MS.gene015170.t1 | MTR_8g012290 | 49.231 | 65 | 32 | 1 | 110 | 173 | 293 | 357 | 1.85e-12 | 68.6 |
MS.gene015170.t1 | MTR_8g012290 | 49.231 | 65 | 32 | 1 | 110 | 173 | 293 | 357 | 1.92e-12 | 68.6 |
MS.gene015170.t1 | MTR_8g062240 | 46.154 | 65 | 34 | 1 | 110 | 173 | 153 | 217 | 1.94e-12 | 67.0 |
MS.gene015170.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 2.99e-12 | 67.8 |
MS.gene015170.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 3.04e-12 | 67.8 |
MS.gene015170.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 3.34e-12 | 67.4 |
MS.gene015170.t1 | MTR_4g070320 | 47.692 | 65 | 33 | 1 | 110 | 173 | 145 | 209 | 3.46e-12 | 67.0 |
MS.gene015170.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 3.47e-12 | 67.4 |
MS.gene015170.t1 | MTR_5g037250 | 38.384 | 99 | 58 | 2 | 76 | 173 | 82 | 178 | 4.48e-12 | 65.5 |
MS.gene015170.t1 | MTR_5g048860 | 47.692 | 65 | 33 | 1 | 110 | 173 | 367 | 431 | 9.00e-12 | 66.6 |
MS.gene015170.t1 | MTR_1g070870 | 43.590 | 78 | 44 | 0 | 95 | 172 | 110 | 187 | 4.76e-11 | 63.2 |
MS.gene015170.t1 | MTR_1g070870 | 43.590 | 78 | 44 | 0 | 95 | 172 | 107 | 184 | 4.77e-11 | 63.2 |
MS.gene015170.t1 | MTR_1g072320 | 41.975 | 81 | 41 | 1 | 100 | 174 | 446 | 526 | 5.83e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015170.t1 | AT4G36930 | 49.099 | 222 | 86 | 5 | 78 | 296 | 160 | 357 | 2.93e-47 | 164 |
MS.gene015170.t1 | AT5G67110 | 52.976 | 168 | 56 | 5 | 16 | 181 | 14 | 160 | 2.18e-37 | 134 |
MS.gene015170.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.78e-31 | 124 |
MS.gene015170.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.78e-31 | 124 |
MS.gene015170.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.78e-31 | 124 |
MS.gene015170.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.78e-31 | 124 |
MS.gene015170.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.78e-31 | 124 |
MS.gene015170.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.78e-31 | 124 |
MS.gene015170.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.82e-30 | 118 |
MS.gene015170.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.82e-30 | 118 |
MS.gene015170.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.82e-30 | 118 |
MS.gene015170.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.99e-29 | 118 |
MS.gene015170.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.99e-29 | 118 |
MS.gene015170.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.99e-29 | 118 |
MS.gene015170.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.99e-29 | 118 |
MS.gene015170.t1 | AT2G20180 | 64.444 | 90 | 22 | 1 | 80 | 169 | 260 | 339 | 3.20e-28 | 112 |
MS.gene015170.t1 | AT4G00050 | 50.862 | 116 | 49 | 3 | 61 | 174 | 62 | 171 | 6.53e-27 | 108 |
MS.gene015170.t1 | AT4G00050 | 50.862 | 116 | 49 | 3 | 61 | 174 | 164 | 273 | 1.94e-26 | 108 |
MS.gene015170.t1 | AT4G00050 | 55.340 | 103 | 41 | 2 | 74 | 174 | 174 | 273 | 2.10e-26 | 108 |
MS.gene015170.t1 | AT4G28800 | 43.382 | 136 | 72 | 4 | 48 | 181 | 189 | 321 | 7.13e-23 | 99.4 |
MS.gene015170.t1 | AT2G46970 | 44.248 | 113 | 59 | 1 | 103 | 215 | 187 | 295 | 2.77e-22 | 97.1 |
MS.gene015170.t1 | AT2G46970 | 44.248 | 113 | 59 | 1 | 103 | 215 | 196 | 304 | 3.18e-22 | 97.1 |
MS.gene015170.t1 | AT2G46970 | 44.248 | 113 | 59 | 1 | 103 | 215 | 218 | 326 | 3.97e-22 | 97.1 |
MS.gene015170.t1 | AT4G28815 | 37.162 | 148 | 75 | 5 | 108 | 249 | 68 | 203 | 8.69e-21 | 90.1 |
MS.gene015170.t1 | AT4G28790 | 50.962 | 104 | 47 | 3 | 80 | 183 | 246 | 345 | 1.08e-20 | 92.8 |
MS.gene015170.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.21e-20 | 92.8 |
MS.gene015170.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.21e-20 | 92.8 |
MS.gene015170.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.21e-20 | 92.8 |
MS.gene015170.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.23e-20 | 92.8 |
MS.gene015170.t1 | AT4G28800 | 34.259 | 216 | 121 | 9 | 48 | 248 | 201 | 410 | 1.70e-20 | 92.4 |
MS.gene015170.t1 | AT4G28815 | 37.162 | 148 | 75 | 5 | 108 | 249 | 144 | 279 | 2.24e-20 | 90.5 |
MS.gene015170.t1 | AT2G24260 | 60.317 | 63 | 25 | 0 | 110 | 172 | 37 | 99 | 7.08e-20 | 87.8 |
MS.gene015170.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.02e-19 | 90.1 |
MS.gene015170.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.04e-19 | 90.1 |
MS.gene015170.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.08e-19 | 89.7 |
MS.gene015170.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 259 | 320 | 1.22e-19 | 89.7 |
MS.gene015170.t1 | AT4G30980 | 37.778 | 135 | 71 | 2 | 38 | 172 | 73 | 194 | 1.65e-19 | 88.2 |
MS.gene015170.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 294 | 355 | 1.67e-19 | 89.7 |
MS.gene015170.t1 | AT5G58010 | 57.576 | 66 | 28 | 0 | 107 | 172 | 98 | 163 | 1.85e-19 | 87.8 |
MS.gene015170.t1 | AT2G24260 | 60.317 | 63 | 25 | 0 | 110 | 172 | 140 | 202 | 1.92e-19 | 88.6 |
MS.gene015170.t1 | AT4G28790 | 54.255 | 94 | 40 | 2 | 80 | 173 | 246 | 336 | 1.94e-19 | 88.2 |
MS.gene015170.t1 | AT4G30980 | 37.778 | 135 | 71 | 2 | 38 | 172 | 121 | 242 | 2.34e-19 | 88.2 |
MS.gene015170.t1 | AT5G67110 | 41.667 | 168 | 53 | 6 | 16 | 181 | 14 | 138 | 3.67e-18 | 81.6 |
MS.gene015170.t1 | AT5G61270 | 58.333 | 72 | 30 | 0 | 105 | 176 | 69 | 140 | 3.47e-17 | 80.9 |
MS.gene015170.t1 | AT5G61270 | 58.333 | 72 | 30 | 0 | 105 | 176 | 69 | 140 | 3.47e-17 | 80.9 |
MS.gene015170.t1 | AT5G61270 | 58.333 | 72 | 30 | 0 | 105 | 176 | 157 | 228 | 6.52e-17 | 81.3 |
MS.gene015170.t1 | AT3G62090 | 36.571 | 175 | 82 | 6 | 99 | 249 | 156 | 325 | 1.19e-16 | 80.5 |
MS.gene015170.t1 | AT3G62090 | 36.571 | 175 | 82 | 6 | 99 | 249 | 173 | 342 | 1.21e-16 | 80.5 |
MS.gene015170.t1 | AT5G67110 | 42.361 | 144 | 60 | 5 | 16 | 157 | 14 | 136 | 3.42e-16 | 75.1 |
MS.gene015170.t1 | AT1G25330 | 35.897 | 117 | 64 | 2 | 110 | 215 | 106 | 222 | 7.43e-15 | 73.2 |
MS.gene015170.t1 | AT4G28811 | 57.500 | 80 | 34 | 0 | 92 | 171 | 335 | 414 | 1.11e-14 | 75.5 |
MS.gene015170.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 133 | 238 | 2.58e-14 | 73.6 |
MS.gene015170.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.62e-14 | 73.9 |
MS.gene015170.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.62e-14 | 73.9 |
MS.gene015170.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.62e-14 | 73.9 |
MS.gene015170.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.62e-14 | 73.9 |
MS.gene015170.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 162 | 267 | 2.74e-14 | 73.6 |
MS.gene015170.t1 | AT1G02340 | 35.616 | 146 | 66 | 5 | 84 | 229 | 123 | 240 | 3.48e-14 | 72.4 |
MS.gene015170.t1 | AT4G33880 | 40.217 | 92 | 50 | 2 | 96 | 184 | 253 | 342 | 3.49e-14 | 73.2 |
MS.gene015170.t1 | AT1G02340 | 35.616 | 146 | 66 | 5 | 84 | 229 | 116 | 233 | 3.70e-14 | 72.4 |
MS.gene015170.t1 | AT1G27740 | 37.374 | 99 | 57 | 2 | 100 | 195 | 161 | 257 | 7.13e-14 | 71.2 |
MS.gene015170.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 304 | 409 | 7.16e-14 | 72.8 |
MS.gene015170.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.85e-14 | 72.8 |
MS.gene015170.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.85e-14 | 72.8 |
MS.gene015170.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.85e-14 | 72.8 |
MS.gene015170.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.17e-13 | 70.5 |
MS.gene015170.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.17e-13 | 70.5 |
MS.gene015170.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.19e-13 | 70.9 |
MS.gene015170.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.19e-13 | 70.9 |
MS.gene015170.t1 | AT5G43175 | 31.967 | 122 | 78 | 2 | 77 | 195 | 103 | 222 | 2.71e-13 | 68.9 |
MS.gene015170.t1 | AT3G07340 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 3.94e-13 | 70.5 |
MS.gene015170.t1 | AT2G14760 | 39.506 | 81 | 47 | 1 | 104 | 184 | 235 | 313 | 4.32e-13 | 69.7 |
MS.gene015170.t1 | AT3G07340 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 5.00e-13 | 70.1 |
MS.gene015170.t1 | AT5G48560 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.32e-12 | 68.9 |
MS.gene015170.t1 | AT4G36540 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.41e-12 | 67.8 |
MS.gene015170.t1 | AT4G36540 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.42e-12 | 67.8 |
MS.gene015170.t1 | AT5G48560 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.52e-12 | 68.9 |
MS.gene015170.t1 | AT2G14760 | 41.791 | 67 | 39 | 0 | 117 | 183 | 259 | 325 | 1.54e-12 | 68.2 |
MS.gene015170.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.48e-12 | 67.4 |
MS.gene015170.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.49e-12 | 67.4 |
MS.gene015170.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 3.13e-12 | 67.4 |
MS.gene015170.t1 | AT4G34530 | 44.615 | 65 | 35 | 1 | 110 | 173 | 174 | 238 | 3.29e-12 | 67.0 |
MS.gene015170.t1 | AT5G62610 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 3.38e-12 | 66.6 |
MS.gene015170.t1 | AT5G62610 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 3.38e-12 | 66.6 |
MS.gene015170.t1 | AT3G23690 | 35.922 | 103 | 62 | 2 | 72 | 173 | 158 | 257 | 3.94e-12 | 67.0 |
MS.gene015170.t1 | AT1G59640 | 46.154 | 65 | 34 | 1 | 110 | 173 | 138 | 202 | 4.00e-12 | 66.2 |
MS.gene015170.t1 | AT1G59640 | 44.737 | 76 | 39 | 2 | 99 | 173 | 129 | 202 | 4.38e-12 | 66.6 |
MS.gene015170.t1 | AT1G10120 | 44.304 | 79 | 41 | 2 | 96 | 173 | 196 | 272 | 5.08e-12 | 66.6 |
MS.gene015170.t1 | AT1G10120 | 44.304 | 79 | 41 | 2 | 96 | 173 | 196 | 272 | 5.08e-12 | 66.6 |
MS.gene015170.t1 | AT1G73830 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.31e-11 | 64.7 |
MS.gene015170.t1 | AT1G73830 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.42e-11 | 64.3 |
MS.gene015170.t1 | AT1G18400 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 6.64e-11 | 62.4 |
MS.gene015170.t1 | AT1G18400 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 8.08e-11 | 62.4 |
Find 72 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATGCACCTTGTTAGAATT+TGG | 0.170114 | 5.1:-9342819 | None:intergenic |
CTTGGAGCTGAAGCTGTTTA+AGG | 0.179292 | 5.1:-9342968 | None:intergenic |
TCCATCTTGAAGCTGGTTAA+TGG | 0.190515 | 5.1:-9341988 | None:intergenic |
AGAGTAGATGTCATATTTAA+AGG | 0.257417 | 5.1:-9343706 | None:intergenic |
ACAACACAGAAACTTCTTTC+GGG | 0.279808 | 5.1:+9343830 | MS.gene015170:CDS |
CAAAGTCAGCTGGTGCTTCT+AGG | 0.289683 | 5.1:+9342599 | MS.gene015170:CDS |
ACTTCTTTCGGGGTGGAATC+TGG | 0.303794 | 5.1:+9343841 | MS.gene015170:CDS |
AATTTATTGCATTCAATTGC+TGG | 0.330715 | 5.1:-9344027 | None:intergenic |
AACAACACAGAAACTTCTTT+CGG | 0.333925 | 5.1:+9343829 | MS.gene015170:CDS |
GAAGCACCAGCTGACTTTGT+TGG | 0.365170 | 5.1:-9342595 | None:intergenic |
GGCTTACCTCTGAAGATTGT+TGG | 0.371609 | 5.1:-9343888 | None:intergenic |
AATGTATCTTCCTCTTCTGT+TGG | 0.387184 | 5.1:+9342056 | MS.gene015170:CDS |
ACTTTGCAAACTTGTGTTGC+CGG | 0.389000 | 5.1:+9344216 | MS.gene015170:CDS |
CAGATGCTGTCATTGAGAAA+TGG | 0.389953 | 5.1:+9343589 | MS.gene015170:intron |
CGCTCCTGACTGATCTCTTC+CGG | 0.402152 | 5.1:-9344235 | None:intergenic |
GAGTAGATGTCATATTTAAA+GGG | 0.403422 | 5.1:-9343705 | None:intergenic |
GATACATTTAAAGCATGGTT+TGG | 0.405835 | 5.1:-9342041 | None:intergenic |
GCTTCATCTTCTTCCATGCC+AGG | 0.419239 | 5.1:+9341963 | MS.gene015170:CDS |
TACATTCTCTGCCTTTGTCT+CGG | 0.426810 | 5.1:+9343647 | MS.gene015170:CDS |
TCCTCTTCTGTTGGAGCAGG+AGG | 0.430203 | 5.1:+9342065 | MS.gene015170:CDS |
TGCAAAGTATTGTTAGTAGT+AGG | 0.434216 | 5.1:-9344201 | None:intergenic |
TCTGTGTTGTTAATATATGA+AGG | 0.439351 | 5.1:-9343817 | None:intergenic |
AGTTCATAATTTGTCAGAAA+AGG | 0.440757 | 5.1:+9342651 | MS.gene015170:CDS |
CTGCGATGTAAATATAATGT+TGG | 0.441190 | 5.1:-9344277 | None:intergenic |
TGCGATGTAAATATAATGTT+GGG | 0.441986 | 5.1:-9344276 | None:intergenic |
TATTTACATCGCAGTTAAGT+AGG | 0.447661 | 5.1:+9344286 | MS.gene015170:CDS |
TTTAAATTTGCAGGAGGGTG+TGG | 0.452272 | 5.1:+9342552 | MS.gene015170:intron |
AACAAGTCTTCGCCGTGTAT+TGG | 0.455886 | 5.1:-9343998 | None:intergenic |
TAGATTGGATGCATAAAGTA+AGG | 0.456385 | 5.1:-9343749 | None:intergenic |
TTGAGAACCGCCTAATAGAT+TGG | 0.459843 | 5.1:-9344056 | None:intergenic |
TCTTCCTCTTCTGTTGGAGC+AGG | 0.460002 | 5.1:+9342062 | MS.gene015170:CDS |
AAAAGATACAAACCTGTACT+TGG | 0.469577 | 5.1:-9342986 | None:intergenic |
CATCCTATGTACTTTCATGA+AGG | 0.470473 | 5.1:+9343622 | MS.gene015170:CDS |
CATAAAGTAAGGAGTTGTCT+AGG | 0.474565 | 5.1:-9343738 | None:intergenic |
AGATCTTTCCATCTTGAAGC+TGG | 0.476129 | 5.1:-9341995 | None:intergenic |
GACTTGTTGAGCAGAGAAGA+AGG | 0.487830 | 5.1:+9342754 | MS.gene015170:intron |
TGAAGCTGGTTAATGGATCC+TGG | 0.492297 | 5.1:-9341981 | None:intergenic |
ACAGCTTCAGCTCCAAGTAC+AGG | 0.499989 | 5.1:+9342974 | MS.gene015170:CDS |
GCCTTTGTCTCGGATGAGTA+CGG | 0.506740 | 5.1:+9343657 | MS.gene015170:CDS |
AAGGAGTTGTCTAGGGGATG+AGG | 0.512056 | 5.1:-9343730 | None:intergenic |
TTGAGCAGAGAAGAAGGAGT+AGG | 0.520380 | 5.1:+9342760 | MS.gene015170:intron |
TCCATTAACCAGCTTCAAGA+TGG | 0.520381 | 5.1:+9341987 | MS.gene015170:CDS |
GAAGGATAGGAAGACATTGA+TGG | 0.522616 | 5.1:-9343799 | None:intergenic |
AGGAAGATACATTTAAAGCA+TGG | 0.529279 | 5.1:-9342046 | None:intergenic |
TGGTCTAGAAGTTGAATCAA+AGG | 0.533794 | 5.1:-9342021 | None:intergenic |
GTTGTTAATATATGAAGGAT+AGG | 0.536631 | 5.1:-9343812 | None:intergenic |
ATAAAGTAAGGAGTTGTCTA+GGG | 0.541699 | 5.1:-9343737 | None:intergenic |
GAAGTTCCAACAAAGTCAGC+TGG | 0.551060 | 5.1:+9342589 | MS.gene015170:CDS |
TCCTCCTGCTCCAACAGAAG+AGG | 0.551374 | 5.1:-9342066 | None:intergenic |
AGAGATTTCGTCTTGTGAAG+AGG | 0.551908 | 5.1:-9341910 | None:intergenic |
AGAATTTCAGTCGGGCGCAA+TGG | 0.555643 | 5.1:+9344173 | MS.gene015170:CDS |
AGCTGTCAAAGAATTTCAGT+CGG | 0.555801 | 5.1:+9344164 | MS.gene015170:intron |
AACATAACAACAACATGGCT+CGG | 0.564736 | 5.1:+9341871 | MS.gene015170:CDS |
GCTGTCAAAGAATTTCAGTC+GGG | 0.565127 | 5.1:+9344165 | MS.gene015170:intron |
CAACACAGAAACTTCTTTCG+GGG | 0.582522 | 5.1:+9343831 | MS.gene015170:CDS |
CACAGAAACTTCTTTCGGGG+TGG | 0.588598 | 5.1:+9343834 | MS.gene015170:CDS |
CTGGTTAATGGATCCTGGCA+TGG | 0.589932 | 5.1:-9341976 | None:intergenic |
AATCTATTAGGCGGTTCTCA+AGG | 0.591562 | 5.1:+9344058 | MS.gene015170:CDS |
TGATTTGTGAAGCCAATACA+CGG | 0.610208 | 5.1:+9343986 | MS.gene015170:intron |
AAGCCTTCATGAAAGTACAT+AGG | 0.613283 | 5.1:-9343625 | None:intergenic |
TCCGTACTCATCCGAGACAA+AGG | 0.621173 | 5.1:-9343658 | None:intergenic |
GTTGCCGGAAGAGATCAGTC+AGG | 0.629530 | 5.1:+9344231 | MS.gene015170:CDS |
ATGAGTACGGAGTTGAGTGA+AGG | 0.632944 | 5.1:+9343670 | MS.gene015170:CDS |
ACGGAGTTGAGTGAAGGAAA+CGG | 0.636148 | 5.1:+9343676 | MS.gene015170:CDS |
ACGTCTCCAACAATCTTCAG+AGG | 0.636386 | 5.1:+9343882 | MS.gene015170:CDS |
TCTAATTCCAAATTCTAACA+AGG | 0.656662 | 5.1:+9342812 | MS.gene015170:CDS |
TAAAGTAAGGAGTTGTCTAG+GGG | 0.660787 | 5.1:-9343736 | None:intergenic |
GTTGGAGCAGGAGGACTCAG+TGG | 0.665702 | 5.1:+9342074 | MS.gene015170:CDS |
AAGAAGATGAAGCTGAACGA+AGG | 0.671619 | 5.1:-9341953 | None:intergenic |
CGGAAGAGATCAGTCAGGAG+CGG | 0.684799 | 5.1:+9344236 | MS.gene015170:CDS |
TGAATATGACTGTGAAAGTG+AGG | 0.701990 | 5.1:+9342109 | MS.gene015170:CDS |
AATGGAACATAACAACAACA+TGG | 0.706557 | 5.1:+9341866 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATATTTAGTATTGATGAT+GGG | - | chr5.1:9343161-9343180 | None:intergenic | 15.0% |
!!! | AGATTAATATTGATTACAAT+TGG | + | chr5.1:9343327-9343346 | MS.gene015170:intron | 15.0% |
!!! | ATCAAAGTATTATTCTTTTT+AGG | - | chr5.1:9342425-9342444 | None:intergenic | 15.0% |
!!! | ATTTTTAAACCATAGTTTAA+AGG | + | chr5.1:9342843-9342862 | MS.gene015170:intron | 15.0% |
!!! | TAAATATTTAGTATTGATGA+TGG | - | chr5.1:9343162-9343181 | None:intergenic | 15.0% |
!!! | TTTTTAAACCATAGTTTAAA+GGG | + | chr5.1:9342844-9342863 | MS.gene015170:intron | 15.0% |
!! | AAAAAGTAAAAATGAGTGTA+AGG | - | chr5.1:9343114-9343133 | None:intergenic | 20.0% |
!! | AAAAGTAAAAATGAGTGTAA+GGG | - | chr5.1:9343113-9343132 | None:intergenic | 20.0% |
!! | AAGAATAATACTTTGATTCT+TGG | + | chr5.1:9342428-9342447 | MS.gene015170:intron | 20.0% |
!! | ACATGAATACATAAAAAGAA+AGG | - | chr5.1:9342172-9342191 | None:intergenic | 20.0% |
!! | CTATGTAAAAAAATGAAAAG+TGG | - | chr5.1:9343084-9343103 | None:intergenic | 20.0% |
!! | TAGAATTATTCTTAATGTAG+TGG | + | chr5.1:9342885-9342904 | MS.gene015170:intron | 20.0% |
!!! | AATTCTTTTACCAATCTATT+AGG | + | chr5.1:9344046-9344065 | MS.gene015170:CDS | 20.0% |
!!! | CACTTTTCATTTTTTTACAT+AGG | + | chr5.1:9343082-9343101 | MS.gene015170:intron | 20.0% |
!!! | CTTGATTTCAATTTTATTTG+TGG | + | chr5.1:9342701-9342720 | MS.gene015170:intron | 20.0% |
!!! | TAATTTTTTACTCAATGTCT+TGG | + | chr5.1:9342289-9342308 | MS.gene015170:intron | 20.0% |
!!! | TATTGTTTGTATGTGTATTT+TGG | + | chr5.1:9342356-9342375 | MS.gene015170:intron | 20.0% |
!!! | TTCTTTTTATGTATTCATGT+GGG | + | chr5.1:9342172-9342191 | MS.gene015170:intron | 20.0% |
!!! | TTTCTTTTTATGTATTCATG+TGG | + | chr5.1:9342171-9342190 | MS.gene015170:intron | 20.0% |
! | AAAAAACACCCTTTAAACTA+TGG | - | chr5.1:9342855-9342874 | None:intergenic | 25.0% |
! | AACATTTGAAGGATAATTAG+TGG | + | chr5.1:9343375-9343394 | MS.gene015170:intron | 25.0% |
! | AATTTATTGCATTCAATTGC+TGG | - | chr5.1:9344030-9344049 | None:intergenic | 25.0% |
! | ACTAATTATCCTTCAAATGT+TGG | - | chr5.1:9343376-9343395 | None:intergenic | 25.0% |
! | AGAGTAGATGTCATATTTAA+AGG | - | chr5.1:9343709-9343728 | None:intergenic | 25.0% |
! | ATAGCAAATTCAATCTAACA+AGG | - | chr5.1:9343520-9343539 | None:intergenic | 25.0% |
! | ATTTGAGAAGATGTAAGTAA+TGG | + | chr5.1:9343228-9343247 | MS.gene015170:intron | 25.0% |
! | GAGTAGATGTCATATTTAAA+GGG | - | chr5.1:9343708-9343727 | None:intergenic | 25.0% |
! | GTTGTTAATATATGAAGGAT+AGG | - | chr5.1:9343815-9343834 | None:intergenic | 25.0% |
! | TCTAATTCCAAATTCTAACA+AGG | + | chr5.1:9342812-9342831 | MS.gene015170:CDS | 25.0% |
! | TGCGATGTAAATATAATGTT+GGG | - | chr5.1:9344279-9344298 | None:intergenic | 25.0% |
! | TTAATGCAAGCAATAAAACA+TGG | + | chr5.1:9342328-9342347 | MS.gene015170:intron | 25.0% |
!! | AGTTCATAATTTGTCAGAAA+AGG | + | chr5.1:9342651-9342670 | MS.gene015170:CDS | 25.0% |
!! | ATTGCATCTTTTAAATTTGC+AGG | + | chr5.1:9342543-9342562 | MS.gene015170:intron | 25.0% |
!! | CACTTTTCAATTAAGCAAAT+TGG | + | chr5.1:9343420-9343439 | MS.gene015170:intron | 25.0% |
!! | TCTGTGTTGTTAATATATGA+AGG | - | chr5.1:9343820-9343839 | None:intergenic | 25.0% |
!! | TCTTTTTATGTATTCATGTG+GGG | + | chr5.1:9342173-9342192 | MS.gene015170:intron | 25.0% |
!!! | ACATCTTCTCAAATTAGTTT+TGG | - | chr5.1:9343222-9343241 | None:intergenic | 25.0% |
!!! | TAGATTGAATTTGCTATCAA+AGG | + | chr5.1:9343523-9343542 | MS.gene015170:intron | 25.0% |
!!! | TTTTGTTGGGATTTGATTTT+GGG | + | chr5.1:9342513-9342532 | MS.gene015170:intron | 25.0% |
!!! | TTTTTGTTGGGATTTGATTT+TGG | + | chr5.1:9342512-9342531 | MS.gene015170:intron | 25.0% |
AAAAGATACAAACCTGTACT+TGG | - | chr5.1:9342989-9343008 | None:intergenic | 30.0% | |
AACAACACAGAAACTTCTTT+CGG | + | chr5.1:9343829-9343848 | MS.gene015170:CDS | 30.0% | |
ACGTCTTAAATTTGAATCGT+CGG | + | chr5.1:9343296-9343315 | MS.gene015170:intron | 30.0% | |
AGAGAATTACCAACATTTGA+AGG | + | chr5.1:9343364-9343383 | MS.gene015170:intron | 30.0% | |
ATAAAGTAAGGAGTTGTCTA+GGG | - | chr5.1:9343740-9343759 | None:intergenic | 30.0% | |
ATTCTAAATACTTCTCTCGA+CGG | + | chr5.1:9343251-9343270 | MS.gene015170:intron | 30.0% | |
CTGCGATGTAAATATAATGT+TGG | - | chr5.1:9344280-9344299 | None:intergenic | 30.0% | |
TAGATTGGATGCATAAAGTA+AGG | - | chr5.1:9343752-9343771 | None:intergenic | 30.0% | |
TATTTACATCGCAGTTAAGT+AGG | + | chr5.1:9344286-9344305 | MS.gene015170:CDS | 30.0% | |
TTATGCACCTTGTTAGAATT+TGG | - | chr5.1:9342822-9342841 | None:intergenic | 30.0% | |
TTTACTCAATGTCTTGGAAA+AGG | + | chr5.1:9342295-9342314 | MS.gene015170:intron | 30.0% | |
! | AGGAAGATACATTTAAAGCA+TGG | - | chr5.1:9342049-9342068 | None:intergenic | 30.0% |
! | ATTTTGCTTGTGGATTTTTG+TGG | + | chr5.1:9342731-9342750 | MS.gene015170:intron | 30.0% |
! | CATCTTTTAAATTTGCAGGA+GGG | + | chr5.1:9342547-9342566 | MS.gene015170:intron | 30.0% |
! | GATACATTTAAAGCATGGTT+TGG | - | chr5.1:9342044-9342063 | None:intergenic | 30.0% |
! | GGAATATTGTTGTGTTACTA+CGG | + | chr5.1:9343441-9343460 | MS.gene015170:intron | 30.0% |
! | TCTTTTACCAATCTATTAGG+CGG | + | chr5.1:9344049-9344068 | MS.gene015170:CDS | 30.0% |
! | TGGTTATGTAATTTTGCTTG+TGG | + | chr5.1:9342721-9342740 | MS.gene015170:intron | 30.0% |
! | TTTTGCTTGTGGATTTTTGT+GGG | + | chr5.1:9342732-9342751 | MS.gene015170:intron | 30.0% |
!! | TGCAAAGTATTGTTAGTAGT+AGG | - | chr5.1:9344204-9344223 | None:intergenic | 30.0% |
!! | TGTGTTTTTGTTAGGTAGAT+TGG | - | chr5.1:9343767-9343786 | None:intergenic | 30.0% |
!! | TTTGTTGGGATTTGATTTTG+GGG | + | chr5.1:9342514-9342533 | MS.gene015170:intron | 30.0% |
!!! | GTCGTTTTGTTGTTTTTGTT+GGG | + | chr5.1:9342500-9342519 | MS.gene015170:intron | 30.0% |
!!! | TGTCGTTTTGTTGTTTTTGT+TGG | + | chr5.1:9342499-9342518 | MS.gene015170:intron | 30.0% |
AAAATGAAAAGTGGAGATGC+TGG | - | chr5.1:9343075-9343094 | None:intergenic | 35.0% | |
AAATGAAAAGTGGAGATGCT+GGG | - | chr5.1:9343074-9343093 | None:intergenic | 35.0% | |
AACATAACAACAACATGGCT+CGG | + | chr5.1:9341871-9341890 | MS.gene015170:CDS | 35.0% | |
AACTGTATGTGATCCTTATG+AGG | + | chr5.1:9343560-9343579 | MS.gene015170:intron | 35.0% | |
AATGTATCTTCCTCTTCTGT+TGG | + | chr5.1:9342056-9342075 | MS.gene015170:CDS | 35.0% | |
AATGTCTTGGAAAAGGTTCT+TGG | + | chr5.1:9342302-9342321 | MS.gene015170:intron | 35.0% | |
ACAACACAGAAACTTCTTTC+GGG | + | chr5.1:9343830-9343849 | MS.gene015170:CDS | 35.0% | |
ACAGCTGAAGTTATGAAACA+AGG | - | chr5.1:9344150-9344169 | None:intergenic | 35.0% | |
AGCTGTCAAAGAATTTCAGT+CGG | + | chr5.1:9344164-9344183 | MS.gene015170:intron | 35.0% | |
AGTAAAAATGAGTGTAAGGG+TGG | - | chr5.1:9343110-9343129 | None:intergenic | 35.0% | |
ATAAGGATCACATACAGTTC+AGG | - | chr5.1:9343559-9343578 | None:intergenic | 35.0% | |
CATAAAGTAAGGAGTTGTCT+AGG | - | chr5.1:9343741-9343760 | None:intergenic | 35.0% | |
CATCCTATGTACTTTCATGA+AGG | + | chr5.1:9343622-9343641 | MS.gene015170:CDS | 35.0% | |
GTAAAAATGAGTGTAAGGGT+GGG | - | chr5.1:9343109-9343128 | None:intergenic | 35.0% | |
GTGAGATTGTGGTATAAAAG+TGG | - | chr5.1:9344124-9344143 | None:intergenic | 35.0% | |
TAAAGTAAGGAGTTGTCTAG+GGG | - | chr5.1:9343739-9343758 | None:intergenic | 35.0% | |
TGAATATGACTGTGAAAGTG+AGG | + | chr5.1:9342109-9342128 | MS.gene015170:CDS | 35.0% | |
TGGTCTAGAAGTTGAATCAA+AGG | - | chr5.1:9342024-9342043 | None:intergenic | 35.0% | |
! | AAGCCTTCATGAAAGTACAT+AGG | - | chr5.1:9343628-9343647 | None:intergenic | 35.0% |
! | AATACGACATTCAAGTTTGC+AGG | - | chr5.1:9343917-9343936 | None:intergenic | 35.0% |
! | ACTGCACTTTTGTCCTATTT+TGG | + | chr5.1:9343015-9343034 | MS.gene015170:intron | 35.0% |
! | CTGCACTTTTGTCCTATTTT+GGG | + | chr5.1:9343016-9343035 | MS.gene015170:intron | 35.0% |
! | GCATCTGAAATATCCTCATA+AGG | - | chr5.1:9343576-9343595 | None:intergenic | 35.0% |
! | GCATCTTTTAAATTTGCAGG+AGG | + | chr5.1:9342546-9342565 | MS.gene015170:intron | 35.0% |
! | TGATTTGTGAAGCCAATACA+CGG | + | chr5.1:9343986-9344005 | MS.gene015170:intron | 35.0% |
!! | CTCGACAATGTGTTTTTGTT+AGG | - | chr5.1:9343775-9343794 | None:intergenic | 35.0% |
AAGAAGATGAAGCTGAACGA+AGG | - | chr5.1:9341956-9341975 | None:intergenic | 40.0% | |
AATCTATTAGGCGGTTCTCA+AGG | + | chr5.1:9344058-9344077 | MS.gene015170:CDS | 40.0% | |
ACTTTGCAAACTTGTGTTGC+CGG | + | chr5.1:9344216-9344235 | MS.gene015170:CDS | 40.0% | |
AGAGATTTCGTCTTGTGAAG+AGG | - | chr5.1:9341913-9341932 | None:intergenic | 40.0% | |
AGATCTTTCCATCTTGAAGC+TGG | - | chr5.1:9341998-9342017 | None:intergenic | 40.0% | |
AGCTCTCAACTTCCCAAAAT+AGG | - | chr5.1:9343031-9343050 | None:intergenic | 40.0% | |
CAACACAGAAACTTCTTTCG+GGG | + | chr5.1:9343831-9343850 | MS.gene015170:CDS | 40.0% | |
CAGATGCTGTCATTGAGAAA+TGG | + | chr5.1:9343589-9343608 | MS.gene015170:intron | 40.0% | |
GAAGGATAGGAAGACATTGA+TGG | - | chr5.1:9343802-9343821 | None:intergenic | 40.0% | |
GCTGTCAAAGAATTTCAGTC+GGG | + | chr5.1:9344165-9344184 | MS.gene015170:intron | 40.0% | |
TACATTCTCTGCCTTTGTCT+CGG | + | chr5.1:9343647-9343666 | MS.gene015170:CDS | 40.0% | |
TCCATCTTGAAGCTGGTTAA+TGG | - | chr5.1:9341991-9342010 | None:intergenic | 40.0% | |
TCCATTAACCAGCTTCAAGA+TGG | + | chr5.1:9341987-9342006 | MS.gene015170:CDS | 40.0% | |
TTATCAGTCTGTGACACACA+TGG | - | chr5.1:9342918-9342937 | None:intergenic | 40.0% | |
TTGAGAACCGCCTAATAGAT+TGG | - | chr5.1:9344059-9344078 | None:intergenic | 40.0% | |
TTTAAATTTGCAGGAGGGTG+TGG | + | chr5.1:9342552-9342571 | MS.gene015170:intron | 40.0% | |
! | GACATTCAAGTTTGCAGGAT+TGG | - | chr5.1:9343912-9343931 | None:intergenic | 40.0% |
!! | ATTGATGATGGGCTGAGAAT+AGG | - | chr5.1:9343150-9343169 | None:intergenic | 40.0% |
!! | TTCTTGGTCTGTTTCTAGTG+TGG | + | chr5.1:9342444-9342463 | MS.gene015170:intron | 40.0% |
!! | TTGATGATGGGCTGAGAATA+GGG | - | chr5.1:9343149-9343168 | None:intergenic | 40.0% |
AACAAGTCTTCGCCGTGTAT+TGG | - | chr5.1:9344001-9344020 | None:intergenic | 45.0% | |
ACATACGCCAGTGTCTTACA+AGG | + | chr5.1:9343194-9343213 | MS.gene015170:intron | 45.0% | |
ACGGAGTTGAGTGAAGGAAA+CGG | + | chr5.1:9343676-9343695 | MS.gene015170:CDS | 45.0% | |
ACGTCTCCAACAATCTTCAG+AGG | + | chr5.1:9343882-9343901 | MS.gene015170:CDS | 45.0% | |
ATGAGTACGGAGTTGAGTGA+AGG | + | chr5.1:9343670-9343689 | MS.gene015170:CDS | 45.0% | |
CTTGGAGCTGAAGCTGTTTA+AGG | - | chr5.1:9342971-9342990 | None:intergenic | 45.0% | |
GAAGTTCCAACAAAGTCAGC+TGG | + | chr5.1:9342589-9342608 | MS.gene015170:CDS | 45.0% | |
TTGAGCAGAGAAGAAGGAGT+AGG | + | chr5.1:9342760-9342779 | MS.gene015170:intron | 45.0% | |
! | AAACAAGGAGCGTGAGATTG+TGG | - | chr5.1:9344135-9344154 | None:intergenic | 45.0% |
! | GGCTTACCTCTGAAGATTGT+TGG | - | chr5.1:9343891-9343910 | None:intergenic | 45.0% |
! | TGAAGCTGGTTAATGGATCC+TGG | - | chr5.1:9341984-9342003 | None:intergenic | 45.0% |
!! | GACTTGTTGAGCAGAGAAGA+AGG | + | chr5.1:9342754-9342773 | MS.gene015170:intron | 45.0% |
!! | GAGATGCTGGGTTTAAGTTG+AGG | - | chr5.1:9343062-9343081 | None:intergenic | 45.0% |
!! | TTTGGTGCCTTGTAAGACAC+TGG | - | chr5.1:9343204-9343223 | None:intergenic | 45.0% |
!!! | GGAGACGTTTTTTCTGTGCT+GGG | - | chr5.1:9343870-9343889 | None:intergenic | 45.0% |
!!! | TGGAGACGTTTTTTCTGTGC+TGG | - | chr5.1:9343871-9343890 | None:intergenic | 45.0% |
AAGGAGTTGTCTAGGGGATG+AGG | - | chr5.1:9343733-9343752 | None:intergenic | 50.0% | |
ACAGCTTCAGCTCCAAGTAC+AGG | + | chr5.1:9342974-9342993 | MS.gene015170:CDS | 50.0% | |
ACTTCTTTCGGGGTGGAATC+TGG | + | chr5.1:9343841-9343860 | MS.gene015170:CDS | 50.0% | |
AGAATTTCAGTCGGGCGCAA+TGG | + | chr5.1:9344173-9344192 | MS.gene015170:CDS | 50.0% | |
CAAAGTCAGCTGGTGCTTCT+AGG | + | chr5.1:9342599-9342618 | MS.gene015170:CDS | 50.0% | |
CACAGAAACTTCTTTCGGGG+TGG | + | chr5.1:9343834-9343853 | MS.gene015170:CDS | 50.0% | |
GCCTTTGTCTCGGATGAGTA+CGG | + | chr5.1:9343657-9343676 | MS.gene015170:CDS | 50.0% | |
GCTTCATCTTCTTCCATGCC+AGG | + | chr5.1:9341963-9341982 | MS.gene015170:CDS | 50.0% | |
TCCGTACTCATCCGAGACAA+AGG | - | chr5.1:9343661-9343680 | None:intergenic | 50.0% | |
TCTTCCTCTTCTGTTGGAGC+AGG | + | chr5.1:9342062-9342081 | MS.gene015170:CDS | 50.0% | |
! | CTGGTTAATGGATCCTGGCA+TGG | - | chr5.1:9341979-9341998 | None:intergenic | 50.0% |
! | GAAGCACCAGCTGACTTTGT+TGG | - | chr5.1:9342598-9342617 | None:intergenic | 50.0% |
!! | ATGATGGGCTGAGAATAGGG+TGG | - | chr5.1:9343146-9343165 | None:intergenic | 50.0% |
CGCTCCTGACTGATCTCTTC+CGG | - | chr5.1:9344238-9344257 | None:intergenic | 55.0% | |
CGGAAGAGATCAGTCAGGAG+CGG | + | chr5.1:9344236-9344255 | MS.gene015170:CDS | 55.0% | |
GTTGCCGGAAGAGATCAGTC+AGG | + | chr5.1:9344231-9344250 | MS.gene015170:CDS | 55.0% | |
TCCTCCTGCTCCAACAGAAG+AGG | - | chr5.1:9342069-9342088 | None:intergenic | 55.0% | |
TCCTCTTCTGTTGGAGCAGG+AGG | + | chr5.1:9342065-9342084 | MS.gene015170:CDS | 55.0% | |
GTTGGAGCAGGAGGACTCAG+TGG | + | chr5.1:9342074-9342093 | MS.gene015170:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 9341867 | 9344311 | 9341867 | ID=MS.gene015170 |
chr5.1 | mRNA | 9341867 | 9344311 | 9341867 | ID=MS.gene015170.t1;Parent=MS.gene015170 |
chr5.1 | exon | 9341867 | 9342130 | 9341867 | ID=MS.gene015170.t1.exon1;Parent=MS.gene015170.t1 |
chr5.1 | CDS | 9341867 | 9342130 | 9341867 | ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1 |
chr5.1 | exon | 9342565 | 9342672 | 9342565 | ID=MS.gene015170.t1.exon2;Parent=MS.gene015170.t1 |
chr5.1 | CDS | 9342565 | 9342672 | 9342565 | ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1 |
chr5.1 | exon | 9342768 | 9342833 | 9342768 | ID=MS.gene015170.t1.exon3;Parent=MS.gene015170.t1 |
chr5.1 | CDS | 9342768 | 9342833 | 9342768 | ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1 |
chr5.1 | exon | 9342930 | 9342995 | 9342930 | ID=MS.gene015170.t1.exon4;Parent=MS.gene015170.t1 |
chr5.1 | CDS | 9342930 | 9342995 | 9342930 | ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1 |
chr5.1 | exon | 9343592 | 9343903 | 9343592 | ID=MS.gene015170.t1.exon5;Parent=MS.gene015170.t1 |
chr5.1 | CDS | 9343592 | 9343903 | 9343592 | ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1 |
chr5.1 | exon | 9343998 | 9344079 | 9343998 | ID=MS.gene015170.t1.exon6;Parent=MS.gene015170.t1 |
chr5.1 | CDS | 9343998 | 9344079 | 9343998 | ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1 |
chr5.1 | exon | 9344166 | 9344311 | 9344166 | ID=MS.gene015170.t1.exon7;Parent=MS.gene015170.t1 |
chr5.1 | CDS | 9344166 | 9344311 | 9344166 | ID=cds.MS.gene015170.t1;Parent=MS.gene015170.t1 |
Gene Sequence |
Protein sequence |