AlfalfaGEDB | MS.gene015171

M. sativa cultivar XinJiangDaYe / MS.gene015171

KEGG: K04498
GO: GO:0003674 GO:0003712 GO:0003824 GO:0004402 GO:0005488 GO:0005575 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0034212 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061733 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0110165 GO:0140110 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02135.19 PF08214.14

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015171.t1	RHN57311.1	76.4	592	94	6	355	903	370	958	2.90E-260	908.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015171.t1	Q9FWQ5	41.0	658	281	10	354	911	1042	1692	7.5e-140	499.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015171.t1	A0A396HXK4	76.4	592	94	6	355	903	370	958	2.1e-260	908.3

TFs/TRs:

Gene ID	Type	Classification
MS.gene015171.t1	TR	TAZ

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015171.t1	MTR_5g085310	77.909	593	84	6	355	903	436	1025	0.0	941
MS.gene015171.t1	MTR_5g085310	70.213	47	14	0	306	352	520	566	5.40e-12	70.5
MS.gene015171.t1	MTR_3g107960	68.778	663	109	8	353	919	546	1206	0.0	907
MS.gene015171.t1	MTR_3g107960	77.273	44	10	0	309	352	639	682	1.03e-11	69.7
MS.gene015171.t1	MTR_6g017010	74.104	614	91	9	353	919	177	769	0.0	902
MS.gene015171.t1	MTR_6g017010	75.000	44	11	0	309	352	260	303	6.18e-12	70.1
MS.gene015171.t1	MTR_3g101100	66.617	677	114	9	353	919	721	1395	0.0	883
MS.gene015171.t1	MTR_3g101100	75.000	44	11	0	309	352	814	857	3.73e-12	71.2
MS.gene015171.t1	MTR_5g017020	66.615	647	67	12	334	919	2	560	0.0	790
MS.gene015171.t1	MTR_5g017020	72.085	566	55	10	334	838	2	525	0.0	774
MS.gene015171.t1	MTR_6g017000	62.633	471	140	5	355	790	470	939	0.0	598
MS.gene015171.t1	MTR_6g017140	54.667	450	140	5	353	766	32	453	6.62e-166	492
MS.gene015171.t1	MTR_6g017140	68.182	44	14	0	309	352	110	153	6.09e-11	66.2
MS.gene015171.t1	MTR_4g005050	42.121	660	276	10	351	911	1043	1695	6.00e-160	511
MS.gene015171.t1	MTR_3g062060	82.424	165	29	0	67	231	158	322	8.69e-79	259
MS.gene015171.t1	MTR_0299s0030	78.481	158	30	1	633	790	146	299	1.16e-76	254
MS.gene015171.t1	MTR_3g453030	72.067	179	43	1	63	234	198	376	3.77e-72	244
MS.gene015171.t1	MTR_3g062090	75.706	177	36	1	65	234	1717	1893	9.84e-68	248
MS.gene015171.t1	MTR_2g450480	70.621	177	45	1	63	232	360	536	1.21e-63	226
MS.gene015171.t1	MTR_6g017130	59.162	191	28	4	712	901	249	390	5.08e-59	207
MS.gene015171.t1	MTR_3g466590	66.667	180	52	2	63	234	408	587	3.56e-58	211
MS.gene015171.t1	MTR_3g466610	63.731	193	63	1	61	246	459	651	1.31e-54	202
MS.gene015171.t1	MTR_5g017025	90.291	103	10	0	132	234	28	130	9.48e-54	184
MS.gene015171.t1	MTR_3g031750	68.786	173	45	3	63	234	1864	2028	4.01e-51	196
MS.gene015171.t1	MTR_0043s0040	67.176	131	36	1	115	238	123	253	2.13e-46	167
MS.gene015171.t1	MTR_0043s0040	60.784	102	33	1	140	234	2	103	6.86e-18	84.7
MS.gene015171.t1	MTR_5g085317	78.723	94	20	0	576	669	1	94	1.66e-44	157
MS.gene015171.t1	MTR_1g047940	52.571	175	36	5	735	909	71	198	1.87e-41	151
MS.gene015171.t1	MTR_1g047940	48.182	110	43	3	572	681	4	99	1.68e-22	96.7
MS.gene015171.t1	MTR_6g017120	71.429	98	27	1	489	586	4	100	4.29e-41	148
MS.gene015171.t1	MTR_3g466530	54.070	172	27	2	63	234	603	722	1.92e-38	154
MS.gene015171.t1	MTR_1142s0010	68.000	100	30	2	63	161	245	343	1.22e-28	118
MS.gene015171.t1	MTR_3g453020	71.250	80	22	1	95	174	66	144	6.95e-26	104
MS.gene015171.t1	MTR_1g047930	62.500	88	27	2	443	528	277	360	3.18e-24	106
MS.gene015171.t1	MTR_6g017135	52.475	101	17	2	453	523	2	101	1.18e-22	95.5
MS.gene015171.t1	MTR_0043s0080	79.032	62	13	0	63	124	454	515	9.67e-21	97.4
MS.gene015171.t1	MTR_0043s0080	79.032	62	13	0	63	124	464	525	1.06e-20	97.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015171.t1	AT1G79000	42.249	658	273	11	354	911	1009	1659	1.27e-163	521
MS.gene015171.t1	AT1G79000	42.249	658	273	11	354	911	1033	1683	2.09e-163	520
MS.gene015171.t1	AT1G79000	42.249	658	273	11	354	911	1033	1683	4.05e-163	520
MS.gene015171.t1	AT1G16710	41.604	661	279	11	351	911	1013	1666	2.62e-157	504
MS.gene015171.t1	AT1G16710	41.604	661	279	11	351	911	1013	1666	2.62e-157	504
MS.gene015171.t1	AT1G16710	41.604	661	279	11	351	911	1013	1666	2.62e-157	504
MS.gene015171.t1	AT1G16710	41.604	661	279	11	351	911	1013	1666	2.62e-157	504
MS.gene015171.t1	AT1G16710	41.793	658	276	11	354	911	977	1627	2.72e-157	503
MS.gene015171.t1	AT1G16710	41.793	658	276	11	354	911	977	1627	2.72e-157	503
MS.gene015171.t1	AT1G16710	41.793	658	276	11	354	911	977	1627	2.72e-157	503
MS.gene015171.t1	AT1G16710	41.604	661	279	11	351	911	1010	1663	2.92e-157	503
MS.gene015171.t1	AT1G16710	41.604	661	279	11	351	911	1039	1692	5.11e-157	503
MS.gene015171.t1	AT3G12980	40.336	714	318	14	293	911	874	1574	1.93e-155	497
MS.gene015171.t1	AT3G12980	40.336	714	318	14	293	911	955	1655	2.76e-155	498
MS.gene015171.t1	AT1G55970	44.030	536	262	12	293	795	749	1279	4.08e-132	431
MS.gene015171.t1	AT1G67220	37.089	639	297	14	351	891	729	1360	1.62e-124	409
MS.gene015171.t1	AT1G55970	40.182	550	277	10	293	795	749	1293	2.95e-120	399
MS.gene015171.t1	AT1G16710	46.305	406	178	7	354	721	1016	1419	1.34e-106	361

Find 157 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCACACTTTGTCCTTCTTTC+AGG	0.073241	5.1:+9320129	None:intergenic
CCCTGGTAGGCAATATATTT+TGG	0.147750	5.1:+9319277	None:intergenic
AGAGTAGATTGTTTGGAAAT+AGG	0.201852	5.1:-9318859	MS.gene015171:CDS
GAAAGTGAATAAGCAGTTTC+TGG	0.202627	5.1:-9320477	MS.gene015171:CDS
TTGAAGATTCACTGTCAATT+TGG	0.219080	5.1:+9323420	None:intergenic
GAGTAGATTGTTTGGAAATA+GGG	0.235125	5.1:-9318858	MS.gene015171:CDS
AAGAGAAATCAACTTCAATT+TGG	0.249229	5.1:-9323107	MS.gene015171:CDS
CACTGAATGCAAGAAATTTC+AGG	0.254650	5.1:-9319175	MS.gene015171:CDS
GGCAGTGAAGAAGCAGTTTC+TGG	0.255829	5.1:-9321211	MS.gene015171:CDS
TTCCAAGTCTTTGCAATTCC+TGG	0.261025	5.1:+9318367	None:intergenic
TTACCAAAGGCGGCTAATTC+TGG	0.284652	5.1:-9320880	MS.gene015171:CDS
TCAAGAATTGAAGACTTTGA+TGG	0.290325	5.1:-9323702	MS.gene015171:CDS
GCATTTGAGACGCTTCTTAC+TGG	0.308967	5.1:-9323755	MS.gene015171:CDS
GCATTTGAGACGCTTCTTAC+TGG	0.308967	5.1:-9323953	MS.gene015171:CDS
TGGTCACTTAGCACTGTTCT+TGG	0.319724	5.1:+9320844	None:intergenic
CTTCGTTTACCATGAGATAT+TGG	0.325834	5.1:-9320091	MS.gene015171:intron
TTGCATCACCAGAGTCTCTT+TGG	0.327824	5.1:+9319467	None:intergenic
TTGCCGTAGAGCTGAAGTTT+TGG	0.336259	5.1:-9318109	MS.gene015171:CDS
CGACGACAGTGATGGATCTA+AGG	0.343722	5.1:-9325773	MS.gene015171:CDS
TAATCATCCCCTTTCTTTGA+AGG	0.345904	5.1:+9319900	None:intergenic
TGAAGATTCACTGTCAATTT+GGG	0.354045	5.1:+9323421	None:intergenic
CTTCTGTTTAAGCTGATTGA+AGG	0.363488	5.1:-9320265	MS.gene015171:CDS
TTCTTGAAGTAAAGTTCTAA+TGG	0.364202	5.1:+9323718	None:intergenic
AAGAGAAATCAACTTCAGTT+TGG	0.364237	5.1:+9323637	None:intergenic
AGTGTCAAATAGAACATTAA+AGG	0.370702	5.1:-9319511	MS.gene015171:CDS
TTCTTTCTTCCTACTGAAAA+GGG	0.371996	5.1:-9319660	MS.gene015171:CDS
TGCCGTGAAGTTATAGTGTC+TGG	0.373882	5.1:-9319213	MS.gene015171:CDS
TTTCTTTCTTCCTACTGAAA+AGG	0.378702	5.1:-9319661	MS.gene015171:CDS
ACTTTCTGATTGTGCTTCCT+TGG	0.380253	5.1:-9323247	MS.gene015171:CDS
GTTTCTCAACTTGCTACATA+TGG	0.388170	5.1:-9319932	MS.gene015171:CDS
GTCCTTGAGAGTAGATTGTT+TGG	0.389989	5.1:-9318866	MS.gene015171:CDS
GCACCAGAATTAGCCGCCTT+TGG	0.391601	5.1:+9320877	None:intergenic
CAGCAGTCTCCTTCAAAGTA+TGG	0.394018	5.1:+9319609	None:intergenic
AAGTGTGTTGATCATAACTA+TGG	0.394998	5.1:+9319048	None:intergenic
ATGCATCTCAATGCCGCCGC+CGG	0.412185	5.1:-9318529	MS.gene015171:CDS
TCGCATTAGGATTGTGTAGA+TGG	0.417229	5.1:+9318750	None:intergenic
CAGCATTACTTGCCCGGCGG+CGG	0.424812	5.1:+9318516	None:intergenic
CAGAGTCTCTTTGGAAGGCT+TGG	0.425209	5.1:+9319476	None:intergenic
TTTCGTTTGCCATACTTTGA+AGG	0.426623	5.1:-9319618	MS.gene015171:CDS
TCATGCAAGAGAGAGAAAAC+TGG	0.430015	5.1:-9320795	MS.gene015171:CDS
CCCTTTCTTTGAAGGAGCAC+AGG	0.430843	5.1:+9319908	None:intergenic
TCAGCAGGGTAATTCTCCTC+TGG	0.435068	5.1:+9320446	None:intergenic
TGCATCTCAATGCCGCCGCC+GGG	0.437980	5.1:-9318528	MS.gene015171:CDS
CAATGACAACATTATCAAAC+AGG	0.440162	5.1:+9323207	None:intergenic
CGGCGTAGCTTATCATTCTT+CGG	0.441625	5.1:+9319843	None:intergenic
CAATGTCAACATAGTCAAAC+AGG	0.443613	5.1:-9323537	MS.gene015171:CDS
CTCCAGGAATTGCAAAGACT+TGG	0.444278	5.1:-9318369	MS.gene015171:CDS
TTTCAGTAGGAAGAAAGAAA+TGG	0.445855	5.1:+9319664	None:intergenic
CTGATCTTATGAACAAGCTT+AGG	0.447346	5.1:-9323463	MS.gene015171:CDS
ATCATTATGTTTAGTGTTGG+AGG	0.449050	5.1:+9318892	None:intergenic
AATCTATAAAAGAATTCAGC+AGG	0.450271	5.1:+9321165	None:intergenic
TTCTTGATTTGAGAACAGTT+TGG	0.456469	5.1:+9318479	None:intergenic
AGAATTAGCCGCCTTTGGTA+AGG	0.464266	5.1:+9320882	None:intergenic
TCAGCAGGGTAATTCTCATC+TGG	0.465105	5.1:+9321180	None:intergenic
CAAACTGAAACTGAGACTTC+TGG	0.468204	5.1:+9318816	None:intergenic
AATATCATTATGTTTAGTGT+TGG	0.474871	5.1:+9318889	None:intergenic
ACCTGTGCTCCTTCAAAGAA+AGG	0.478002	5.1:-9319909	MS.gene015171:CDS
GATCTATAAGAGAATTCAGC+AGG	0.480043	5.1:+9320431	None:intergenic
TGAGGTGCATACACTTTGTC+AGG	0.483949	5.1:-9319015	MS.gene015171:intron
GCCAAAATATATTGCCTACC+AGG	0.484399	5.1:-9319278	MS.gene015171:CDS
ATGGCTCAGCATTACTTGCC+CGG	0.490163	5.1:+9318510	None:intergenic
ACCGAAGAAAATATTGTCGT+TGG	0.494509	5.1:-9319705	MS.gene015171:CDS
CCTGTGCTCCTTCAAAGAAA+GGG	0.494532	5.1:-9319908	MS.gene015171:CDS
AAAGAAATGGTCATGTATGT+TGG	0.496652	5.1:+9319677	None:intergenic
TCCCAGACACTATAACTTCA+CGG	0.498199	5.1:+9319211	None:intergenic
AGTGGGATGAATGCAATAGA+TGG	0.504930	5.1:-9321011	MS.gene015171:CDS
CATTATGTTTAGTGTTGGAG+GGG	0.505283	5.1:+9318894	None:intergenic
GATCAACACACTTCAAAGAA+TGG	0.512393	5.1:-9319038	MS.gene015171:CDS
GTGCAAAATTCGATTAAATG+AGG	0.513828	5.1:-9318435	MS.gene015171:CDS
TCATTATGTTTAGTGTTGGA+GGG	0.517970	5.1:+9318893	None:intergenic
AGACATTAACAAACAAATTG+AGG	0.519761	5.1:-9323792	MS.gene015171:CDS
TGTTCAGAAGGAGAAGTTGA+TGG	0.521325	5.1:-9323306	MS.gene015171:CDS
AATCATCATAGAGGAATACT+TGG	0.522130	5.1:+9318778	None:intergenic
GGCGGCTAATTCTGGTGCTA+AGG	0.522544	5.1:-9320872	MS.gene015171:CDS
ATCACCAGAGTCTCTTTGGA+AGG	0.522915	5.1:+9319471	None:intergenic
GGTTGTGAGATCTGAGTCTT+CGG	0.522933	5.1:-9325733	MS.gene015171:CDS
CGAAAAGTCTTATCTCTAAG+TGG	0.523031	5.1:+9320824	None:intergenic
GAATTAGCCGCCTTTGGTAA+GGG	0.525892	5.1:+9320883	None:intergenic
CAGCAGGGTAATTCTCCTCT+GGG	0.526093	5.1:+9320447	None:intergenic
GCACTGATTTCTGTTCTACA+TGG	0.527594	5.1:+9318142	None:intergenic
CAAGCCTTCCAAAGAGACTC+TGG	0.527624	5.1:-9319475	MS.gene015171:CDS
AGAAATTTCAGGAGTGTGAA+AGG	0.528641	5.1:-9319164	MS.gene015171:intron
GACAGTGACGACGGTGGTGG+TGG	0.532800	5.1:-9325711	MS.gene015171:intron
TGCAAAATTCGATTAAATGA+GGG	0.532824	5.1:-9318434	MS.gene015171:CDS
CTGCTGGTGTGGTAATGCTA+TGG	0.533073	5.1:-9319592	MS.gene015171:CDS
TTTCCAAAACTTCAGCTCTA+CGG	0.533760	5.1:+9318106	None:intergenic
GTTATCTGTTGACAACCAAC+TGG	0.534094	5.1:-9321232	MS.gene015171:CDS
AGACATTAACAAACAAATTG+AGG	0.534571	5.1:-9323990	MS.gene015171:CDS
CATGGACTGAATCAGCATCA+AGG	0.538652	5.1:+9323133	None:intergenic
ACACTTCTCAACAAGTACTT+AGG	0.539088	5.1:-9323514	MS.gene015171:CDS
TCAACTTCAATTTGGACTCG+TGG	0.539110	5.1:-9323099	MS.gene015171:CDS
TTATACTAACTTCTCACTCC+AGG	0.540435	5.1:-9318385	MS.gene015171:CDS
TCAACTTCAGTTTGGACTCG+TGG	0.541203	5.1:+9323645	None:intergenic
ACAAATTCCTTCACATCAGA+AGG	0.542860	5.1:+9323581	None:intergenic
TGGATCTAAGGGTCGGAATG+AGG	0.544069	5.1:-9325761	MS.gene015171:CDS
GGCAGCGACGACGGCGAGGG+TGG	0.546713	5.1:-9325796	MS.gene015171:CDS
TTGATGGCTAATGCACTGAA+TGG	0.547833	5.1:-9323290	MS.gene015171:CDS
GGTGAGGATGGCAGCGACGA+CGG	0.553835	5.1:-9325805	None:intergenic
GAACAAATGTGATGTTCAGA+AGG	0.556483	5.1:-9323318	MS.gene015171:CDS
GCCGTGAAGTTATAGTGTCT+GGG	0.559340	5.1:-9319212	MS.gene015171:CDS
ACAAACTCCTTCACATCAGA+AGG	0.559927	5.1:-9323163	MS.gene015171:CDS
GAAAGCGATGGAGCAATCGT+TGG	0.563087	5.1:-9318087	MS.gene015171:CDS
GCGTCTCAAATGCAAGAAGC+GGG	0.563643	5.1:+9323963	None:intergenic
CATGCAAGAGAGAGAAAACT+GGG	0.565706	5.1:-9320794	MS.gene015171:CDS
AATGTAGAATACCACGCTGC+AGG	0.566577	5.1:-9318346	MS.gene015171:intron
TCGGACAGTGACGACGGTGG+TGG	0.571071	5.1:-9325714	MS.gene015171:CDS
ACTCTTACCTTCTGATGTGA+AGG	0.572398	5.1:-9323588	MS.gene015171:CDS
TGATGGCTAATGCACTGAAT+GGG	0.574148	5.1:-9323289	MS.gene015171:CDS
TTCCAAACAATCTACTCTCA+AGG	0.576903	5.1:+9318864	None:intergenic
AGCGTCTCAAATGCAAGAAG+CGG	0.579572	5.1:+9323764	None:intergenic
TTATAGTGTCTGGGAAGCGA+TGG	0.580973	5.1:-9319203	MS.gene015171:CDS
AAATAGAACATTAAAGGACA+TGG	0.581441	5.1:-9319505	MS.gene015171:CDS
CAAACGAAAAGCTGTCACCT+TGG	0.585482	5.1:+9319632	None:intergenic
ACTCATACCTTCTGATGTGA+AGG	0.585878	5.1:+9323156	None:intergenic
ACTGCTTCTTCACTGCCAGT+TGG	0.587332	5.1:+9321217	None:intergenic
GAACAGTTTGGATGAGAGCA+TGG	0.587828	5.1:+9318491	None:intergenic
AGCGTCTCAAATGCAAGAAG+CGG	0.590962	5.1:+9323962	None:intergenic
CCAAAATATATTGCCTACCA+GGG	0.595401	5.1:-9319277	MS.gene015171:CDS
AGAATGATAAGCTACGCCGC+TGG	0.596059	5.1:-9319839	MS.gene015171:intron
CATACTTTGAAGGAGACTGC+TGG	0.599995	5.1:-9319608	MS.gene015171:CDS
GATGGCAGCGACGACGGCGA+GGG	0.606413	5.1:-9325799	MS.gene015171:CDS
GACGACAGTGATGGATCTAA+GGG	0.607139	5.1:-9325772	MS.gene015171:CDS
CTGTGCTCCTTCAAAGAAAG+GGG	0.607767	5.1:-9319907	MS.gene015171:CDS
TCTTTCTTCCTACTGAAAAG+GGG	0.608508	5.1:-9319659	MS.gene015171:CDS
AATATTGCAAGTGAGCTATG+AGG	0.614269	5.1:+9319247	None:intergenic
GAGGGTGGCGACGACAGTGA+TGG	0.615762	5.1:-9325781	MS.gene015171:CDS
TACTGAAAAGGGGAACTCCA+AGG	0.617666	5.1:-9319649	MS.gene015171:CDS
CATGGTAAACGAAGGTACGA+AGG	0.628852	5.1:+9320100	None:intergenic
AATAGAACATTAAAGGACAT+GGG	0.630593	5.1:-9319504	MS.gene015171:CDS
GCATGTTCCCTTACCAAAGG+CGG	0.630753	5.1:-9320890	MS.gene015171:CDS
ATGGTAAACGAAGGTACGAA+GGG	0.635264	5.1:+9320101	None:intergenic
TTTGAAGGAGACTGCTGGTG+TGG	0.637044	5.1:-9319603	MS.gene015171:CDS
CCTGAAAGAAGGACAAAGTG+TGG	0.639771	5.1:-9320129	MS.gene015171:CDS
ACTCGTGGTTAGATACAAGA+TGG	0.648760	5.1:-9323084	MS.gene015171:CDS
ACTCGTGGTTAGATACAAGA+TGG	0.648760	5.1:+9323660	None:intergenic
AATGCATGTTCCCTTACCAA+AGG	0.654704	5.1:-9320893	MS.gene015171:CDS
ACAGTGATGGATCTAAGGGT+CGG	0.659796	5.1:-9325768	MS.gene015171:CDS
ATCTATAAAAGAATTCAGCA+GGG	0.660921	5.1:+9321166	None:intergenic
GGATGGCAGCGACGACGGCG+AGG	0.664808	5.1:-9325800	MS.gene015171:CDS
CAATATCTCATGGTAAACGA+AGG	0.666016	5.1:+9320092	None:intergenic
AGGGAATGAGAATCTTGATG+AGG	0.666581	5.1:-9320761	MS.gene015171:intron
TAGAGGAATACTTGGCACGA+CGG	0.668087	5.1:+9318786	None:intergenic
GGTTAGATACAAGATGGTCA+AGG	0.669020	5.1:-9323078	MS.gene015171:intron
GGTTAGATACAAGATGGTCA+AGG	0.669020	5.1:+9323666	None:intergenic
ATCTATAAGAGAATTCAGCA+GGG	0.680316	5.1:+9320432	None:intergenic
CATTAACAAACAAATTGAGG+AGG	0.682556	5.1:-9323987	MS.gene015171:CDS
GGAGGGGATATCATCAACAA+CGG	0.699125	5.1:+9318910	None:intergenic
ACACACTTCAAAGAATGGTG+AGG	0.703040	5.1:-9319033	MS.gene015171:CDS
ACACTTCTCAACAAGTACCA+AGG	0.704084	5.1:+9323230	None:intergenic
GAGTCTTCGGACAGTGACGA+CGG	0.708738	5.1:-9325720	MS.gene015171:CDS
GCTCAGCATTACTTGCCCGG+CGG	0.716635	5.1:+9318513	None:intergenic
ATGGTAGAGAATCATCATAG+AGG	0.733865	5.1:+9318769	None:intergenic
ATTGTAACACACCTGCAGCG+TGG	0.738381	5.1:+9318335	None:intergenic
TCTTCGGACAGTGACGACGG+TGG	0.748377	5.1:-9325717	MS.gene015171:CDS
GTTTCTGGACATCATCCCAG+AGG	0.751856	5.1:-9320462	MS.gene015171:CDS
AAGGGTCGGAATGAGGACGA+CGG	0.752142	5.1:-9325754	MS.gene015171:CDS
CATGGACTGAATCAACATCG+AGG	0.754681	5.1:-9323611	MS.gene015171:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	9318080	9325820	9318080	ID=MS.gene015171
chr5.1	mRNA	9318080	9325820	9318080	ID=MS.gene015171.t1;Parent=MS.gene015171
chr5.1	exon	9325712	9325820	9325712	ID=MS.gene015171.t1.exon1;Parent=MS.gene015171.t1
chr5.1	CDS	9325712	9325820	9325712	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9323945	9324019	9323945	ID=MS.gene015171.t1.exon2;Parent=MS.gene015171.t1
chr5.1	CDS	9323945	9324019	9323945	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9323079	9323821	9323079	ID=MS.gene015171.t1.exon3;Parent=MS.gene015171.t1
chr5.1	CDS	9323079	9323821	9323079	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9321161	9321289	9321161	ID=MS.gene015171.t1.exon4;Parent=MS.gene015171.t1
chr5.1	CDS	9321161	9321289	9321161	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9320762	9321031	9320762	ID=MS.gene015171.t1.exon5;Parent=MS.gene015171.t1
chr5.1	CDS	9320762	9321031	9320762	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9320427	9320555	9320427	ID=MS.gene015171.t1.exon6;Parent=MS.gene015171.t1
chr5.1	CDS	9320427	9320555	9320427	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9320241	9320293	9320241	ID=MS.gene015171.t1.exon7;Parent=MS.gene015171.t1
chr5.1	CDS	9320241	9320293	9320241	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9320092	9320152	9320092	ID=MS.gene015171.t1.exon8;Parent=MS.gene015171.t1
chr5.1	CDS	9320092	9320152	9320092	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9319840	9319985	9319840	ID=MS.gene015171.t1.exon9;Parent=MS.gene015171.t1
chr5.1	CDS	9319840	9319985	9319840	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9319464	9319752	9319464	ID=MS.gene015171.t1.exon10;Parent=MS.gene015171.t1
chr5.1	CDS	9319464	9319752	9319464	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9319165	9319304	9319165	ID=MS.gene015171.t1.exon11;Parent=MS.gene015171.t1
chr5.1	CDS	9319165	9319304	9319165	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9319016	9319073	9319016	ID=MS.gene015171.t1.exon12;Parent=MS.gene015171.t1
chr5.1	CDS	9319016	9319073	9319016	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9318706	9318933	9318706	ID=MS.gene015171.t1.exon13;Parent=MS.gene015171.t1
chr5.1	CDS	9318706	9318933	9318706	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9318347	9318579	9318347	ID=MS.gene015171.t1.exon14;Parent=MS.gene015171.t1
chr5.1	CDS	9318347	9318579	9318347	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1
chr5.1	exon	9318080	9318176	9318080	ID=MS.gene015171.t1.exon15;Parent=MS.gene015171.t1
chr5.1	CDS	9318080	9318176	9318080	ID=cds.MS.gene015171.t1;Parent=MS.gene015171.t1

Gene Sequence

>MS.gene015171

ATGGCAGCGACGACGGCGAGGGTGGCGACGACAGTGATGGATCTAAGGGTCGGAATGAGGACGACGGTTGTGAGATCTGAGTCTTCGGACAGTGACGACGGTGGTGGTGGTAAGATTTGAGGTTGAAAACGGCGGAGGACGGAGGACGGTGGTGGTGGTGGTGGAGATGAACGGGTGGTTGGATAAGTGAGAAAGGTTGAAGAGAACTGAATGCTGAATGAGAGAGACAATTTTTTTGAAAGAGTATACTTTCTTTTTTGGAAAATGATAACATGTGCCCTAAGGGCACATGATAAGAAATTTAAAATAGAAACAATTGTCTTAAAAGTTGTGCATTCAATTTTATTCAACATTTAAAAGTCAAAATTTTGTTGTTTACTATGAATAGTTTCTAATTTTAAATTTCTTAACTTGTGCCCTAAGGGCACAAGATAACAAAACCCTTTTTTTTTTTTTTTTTTGTTGAGCTTGCTTTTTTTATACTTCATTGTGACAAGTGGGGGGTGTAGGAGAGGGGTACACCACGTAAGGGTGTTTACCTATCAGCTCTCAGACTTTATTACTTTGGCATAAACTATTTTAATCAAAAGAATTGATTGTAAGATTACTTTTGATTAGAAATTTAATCATTTGAAATGAAAGCTATGTATAAATACTACTCCCTCTCGGGTCCTATTTACAAGAAACATTTCAGTCAACAAAAGTTAATGTATCTGGTCTAATTTTTTAACCAGGTACATTAGTTTTTGTTGACCCAAATTTTTCTTATAAATAAGACCAGAGGTAGTAATTACTTGACTTATCAGATTACTTCAGAAGAAATAATTATCAGATTAATTAAGAAAACAAGAACAACAATTGTGTCAACCTCAGAGCGTCAACACCAAGTTGCTTGTAACTTGTATGTCTCTCTTCCTCTTTCTCTTTCTCTAATTTTCTCTTTTTCCCAATTCTTAAACCTTAATTTTAATTTTATTGAATTCAAATTTTGGGGTTTTGTTTTTAAATCAAGTGATTATTCAATCCACAGTTTTGTAACGTTGCTATGGTTATGAATTGATTATAATAACTTCTTTCTTGCTGTTAATTTCTGTTTTCTTTTATAAAATTAATTCGTTTTTTTTCTTCTTCTTTGAATTAATGAATTTGAGTCTTTGAATGTTGATTAATAATAATGATGATGATAAAGGGTTCCAAGAATCTTTGACACTTTTTTAATTTTGGATAAAAAAAGGAAAAAGAAAAAAGAAAGAGGAAGATTTTAATTGTGACAATGGGAGTGTTGTTAGATACAGTACACTTTTAGTACAAAATATTGCGGTGCTATAACATTGTTGCGTAGCGGAATTCGGTATATAGATGATTGTTAAAATTCGGCCACGATTAAGTGGTATAGCGCTGTTATAGCTGTTATTCAACAACATTGTTTGTTACTTTTTAATGTTACGATTTAACTTTTCTGGTCAAGTGAAATTCAAATAGGGGCTCTGTTATTTTGATTAGATTTGTCTTCTTTGATTTTCTTTCTCATGTTCATCCTGAATTGTTTATTAATTTGAATTGCTAGGAAGTTGGTGATGAAAAAATATGCATACCCTCTTCTTCAAATGTCAATATAAAGCTTCCTGCCACCAAATATGTTGAAATTGGAGACTCCCGGGAAACTATTGGTGAGTTTTATTTTTCTTCTCTAAATTTTAAGGTTTCTCCTACCACTTTGCATTTAGTTTCTTAACTTAAAATTATAATTCTTCCATGAGAGTAATAAGAAGATTATAAGTGAATAAATGATTTATTGTAGGAATGGAAGACATTAACAAACAAATTGAGGAGGACCCGCTTCTTGCATTTGAGACGCTTCTTACTGGAGTGCAAAGTTATTCCATTAGAACTTTACTTCAAGAATTGAAGACTTTGATGGACTCATCATCAGACCAAAATTATAATTCTTATATTAGACTAATAAGAAGATTATAAGTGAATAAATGATTGTTTGTAGTAATGGAAGACATTAACAAACAAATTGAGGATGATCCGCTTCTTGCATTTGAGACGCTTCTTACTGGAGTGCAAAGTTATTCCATTAGAACTTTACTTCAAGAATTGAAGACTTTGATGGACTCATCATCAGACCTTGACCATCTTGTATCTAACCACGAGTCCAAACTGAAGTTGATTTCTCTTTTTCATGGACTGAATCAACATCGAGGACTCTTACCTTCTGATGTGAAGGAATTTGTTGAGATAGTGCAAAATTTCTTCAATGTCAACATAGTCAAACAGGACACTTCTCAACAAGTACTTAGGAAGCACAACCAACTTCTTGATTCGAAAACTGATCTTATGAACAAGCTTAGGAGTGCAAAGAGTACACAAACCCAAATTGACAGTGAATCTTCAACTGCAAATGCGCAGATACACAAACTCTCTTTACAAATTGATGATCTTGTGAAACAAAGAGATGATTTGAAATCAGTAGTGAACAAATGTGATGTTCAGAAGGAGAAGTTGATGGCTAATGCACTGAATGGGCACAACAAAGTAAAGAGTTACTTTCTGATTGTGCTTCCTTGGTACTTGTTGAGAAGTGTCCTGTTTGATAATGTTGTCATTGAAGAAGTTCTGCACTATCTCAACAAACTCCTTCACATCAGAAGGTATGAGTCCTTGATGCTGATTCAGTCCATGAAAAAGAGAAATCAACTTCAATTTGGACTCGTGGTTAGATACAAGATGGTCAAGGTCTGATGATGAGTCCATCAAAGTCTTCAATTCTTGAAGTAAAGTTCTAATGGAATAACTTTGCACTCCAGTAAGAAGCGACTCAAATGCAAGAAGCGGGTCCTCCTCAATCTGTTTGTTAATGTCTTCCATTGCTACAAACAATCATTTATTCACTTATAATCTTCTTATTACTCTCATGGAAGAATTATAATTTAAGTTAAGAAACTAAACGCAAAGTGGGAGGAGAAACCTTAAAATTCAGAGAAGAAAAATGAAACTCACCAATAGTTTCCTGGGAGTCTCCAATTTCAACATATTTGGTGGCAGGAAGCTTTATATTGACGTTTGAAGAAGAGGGTATGCATATTTTTTCATCACTTTCTTTGTTTATTAATTCAAATAGTGAATCATGGACGTTTCTACTTAAACATTTGATCTTTGTTTATATGATTTCTGATTTCTGTTCACATTGGTATTTATATATGCACACTTAATTGTGAGCTTGTTTAAATTTATGTTAATCATGTTTTCCCTCTTTATTAGTTTATGGCACATCAAGAACATTGTTGTAATTTCTCTAATTTATATTTGTTGATTGTTTCTTGTGGCTTCAGAATTTAAATATCATCTGATAAAGCGAGAAGATGCTTACTAAGGGTTGTTATATTGGTGCGAATACTTGGAGCGAAATACCAAAACATTCTTCATCAGTTATCTCAAACATTCCACGAAAGAGATGTTTTGAAGAATTAAGCTATCAAGTAGGATTCTCCACAGACTGGCGGTATCATTCTGAAATTGTGTACAACCGTAATTCGATAAGAAGAAAAATGTAAGTGAAAGTGATTTAGTTTTCACAGAAATTATTCAGTTTTGAAATCATTTAGAACGAGAAATTTGCACCTATTGTGGAAATATTGCTATTTACCGATGCTGCTTCAAAGGTTTGTTTCTTGAATTGTGTCTGAGCTATTATTGATGATGATGTTGAACAGGACATACAAGGCAGAGTAGTATTTAGTCAGGAGGGGACAGTTGCTCAAAAGATATCAGAGGAGGGGAAAGATCTTGAAATACATGGGATGACAGACAGCAATTCAATGGAAATTGACATCGGAGCGAATGACAATATGCATGCCCTCATAAGCCAGCTTCCAATTCCTATTGATGTAGAGGACAAACAAGACAGAATTTAATTCAACCAGGAGGGGACAGATTCTCAAGAAATTCACTGAGCCAAAAGCTAATCAACAGAAGCAAACCACATCCTCAAATAAAATAAATGATGTTGTTTCCTTGATTGATCTGTCCACCCATGATCAAATAACCAAACATATTTGAAGTCTGAAAAAGCAATCCGTTCAGGTTAGTACACCACCTTCCTGTGTTTTTAAATACATTGATCTGTTTAGGCATTGGTCTTCCTCTTCTTTTAAGCATTTGATTTATGATAATTCATGTTTGTAAGCATTTGGTTTTATGATAATTCATGTTGTCTAAGCATTTGGTTTATAACATAGGAATTTTAATGCATTGTGAAGTTGTGTCTTTCTAAGCCATATACAAGTTGACACTTTTTTTTTTAACAGAGTTCAACTGCGGGCGACAACAACACATGTCAATAATTGCTGTCAGTAATAATTAGTTAGATAATTGATTCCTTTTATATAACTATCAGTCCGATCAATAGTAGTCTGAAATTTATCAGTATTATTGATATTTTTCAGTCCCTTCCTAGTATGTTATTTAAAAAGAAATTGAATATTCATTATTGTCTGATTTGTCATGCATGACTCCAAAACTGTAGGTTGTAGTTGCAGAAAGTATCTCTATTAGAGAAGTGTTATCTGTTGACAACCAACTGGCAGTGAAGAAGCAGTTTCTGGACATCATTCCAGATGAGAATTACCCTGCTGAATTCTTTTATAGATTAAGAGTAAGTTTAAAGTGTTACGCCAAGTTTGATGTCTACTCTATTATGTCTGTCTTTAATATCAATTACTATATAATTCAGCTTGATAGAGAGAAATTTAAACCAACTCTTTATGACTGTTTTTTCTTCTAGTGGGATGAATGCAATAGATGGCAGCATCAAATTTGTGCACTCTACAAGAAAGCAGATTTAGACTGCAGTGCTGAATATATATGTCATGTATACCACCAAAAAGAAATTGAAAATGGAATGCATGTTCCCTTACCAAAGGCGGCTAATTCTGGTGCTAAGGACTTTCCAAGAACAGTGCTAAGTGACCACTTAGAGATAAGACTTTTCGAGCGTCTCATGCAAGAGAGAGAAAACTGGGAAAAAGTTGAAGGGAATGAGAATCTTGATGAGGTAATACTGAGAAATCTGCATGTATGCACATAAACTTCAAATATCTTATTTTCTTATTCTTATGCAAGCATGTAAATTGAAAATAGTAATAAATTAGTATCCTGCCATGTTCCCTTAAAATTATTGATCTTTTTCTTCGAAATATATATTGATTTGAAAATTCTAGATTATTTACTTACGTGTCTCGAATTACTGCAAAATTGCAGGTTTTAGCAGCAGAAAGTCTTTCAATTAGAAAAGTGCTATCTATCAACAAGCAATTGAAAGTGAATAAGCAGTTTCTGGACATCATCCCAGAGGAGAATTACCCTGCTGAATTCTCTTATAGATCAAGAGTAAGTTCAGTGGTTTATCAATGAATAAATGGATATACCACCAGTTGCTTCTTCTGAACTAAATGTCTCTTGATGTATACTCTAACATGTCTGAATTATTCCGAACATTTAATAGAAGTTCTCTTGATTTCAGGTTATTCTTCTGTTTAAGCTGATTGAAGGAGCAGATGTATGCATTTTTGGAATGTACGTCCAGGAATTTGACTCTGAATGCAGCAGTCCCAATCAGCGCTTGTGTATGCATATCATATCTTGATTCCGTCAAGTATTTTAGGCCTGAAAGAAGGACAAAGTGTGGAGAAGCCCTTCGTACCTTCGTTTACCATGAGATATTGGTATTTTTCTTTTAAACTCTAATTCTATGCCAATAAAACTAATAAAATGAACACTTAATCTTTCCATTCTCTCTTTTTATGCTTTATTTTTATTTCTTATCATCAGATTAGATACCTTGATTTTTGTAACAAAAGGGGTTTCTCAACTTGCTACATATGGACCTGTGCTCCTTCAAAGAAAGGGGATGATTATATACTATATTGCCATCCCGAAGAGCAAAAGACTCCGAAGAATGATAAGCTACGCCGCTGGTCTGTCTTTTGTTTCTCTTTATGCGTCTGTGTGTGTTGAATTTTCATGAGCTATTTTCCTTATTTTTATATTGTTTGTTTATGCAGGTATCTTTTGATGCTAAAAAATGCTACCGAAGAAAATATTGTCGTTGGTTTAACCAACATACATGACCATTTCTTTCTTCCTACTGAAAAGGGGAACTCCAAGGTGACAGCTTTTCGTTTGCCATACTTTGAAGGAGACTGCTGGTGTGGTAATGCTATGGAAGTAGCCAAGACCTTCGAAAAAGAGAGTGTAGGAGACTATGAGAAGTTGTTGAAACAAGTGTCAAATAGAACATTAAAGGACATGGGACATGCCAAGCCTTCCAAAGAGACTCTGGTGATGCAAAAAGTATGTCTATCTTGTCATCCAATGGGATATATCCTTTTATACTTGAGTAAATGAAATGTTGCTATGTTCCTATTATAGACTAGTTTAAGTTATTTTCATAATATGTACATGTGTAATCTGATCTTTCTTCCTTTTCTTTTTCCCCCTAACTTCTATTAGGTTGGCCAAAATATATTGCCTACCAGGGAAAACTTCCTCATAGCTCACTTGCAATATTCATGCTTGCACTGCCGTGAAGTTATAGTGTCTGGGAAGCGATGGTTTTACACTGAATGCAAGAAATTTCAGGAGTGTGAAAGGTATGATAACTTGAATACACATTGAACTGTTTTTAGCATTGAATGAAATAAAAAGGGCTTTTGTCATTGACTTTCACTTTAAGTATTTCAGATGCCATAGTTATGATCAACACACTTCAAAGAATGGTGAGGTGCATACACTTTGTCAGGTAACAACCTAAACCTGAAGTTTTTCATTTCATATGATTGTTTCATCATTAGTAATTTCGTATAATTGTGTAACGTTTTCAGGCCGTTGTTGATGATATCCCCTCCAACACTAAACATAATGATATTGTCCTTGAGAGTAGATTGTTTGGAAATAGGGACAACTTTTTGATCTTCTGCCAGAAGTCTCAGTTTCAGTTTGACACACTCCGTCGTGCCAAGTATTCCTCTATGATGATTCTCTACCATCTACACAATCCTAATGCGATGACTCAAAATGAACACCAGTTAACTCAAAACTGTTCAACACAAGTATGTCAATCTGAGAATCAGGAGTCAAATGAAGAAATGTATGAATTTAATTTTCTCGCTTTTTTGTTTTCATCACACATTTGTCCTAAGCTAGGTTGTTGATCATACTTATTGACTTACACACAGATGGTGAAACTGCTGAACGTTTTGAAGCATGCATCTCAATGCCGCCGCCGGGCAAGTAATGCTGAGCCATGCTCTCATCCAAACTGTTCTCAAATCAAGAAGTTGTTCTATCCTGCCAGTAAGTGCAAAATTCGATTAAATGAGGGCTGCCAGCATTGTAAAAAGATATGGTTTATACTAACTTCTCACTCCAGGAATTGCAAAGACTTGGAATGTAGAATACCACGCTGCAGGTGTGTTACAATTAGAATTCTACACTACCTAGAGAATTTCGATATTCTATTTTATGAATTATTCTTTTACTAAACTATGCATAGATATACTTATTCATTTCAAAACAGAGTCATTTTTTTTTGGCTAATCTATGCATACTTATTCTTTAATAGTTATGTTGAATTTGCAGTGATATGAAGAACCATGTAGAACAGAAATCAGTGCATTCTGAATCTTGCCGTAGAGCTGAAGTTTTGGAAAGCGATGGAGCAATCGTTGGCCAATGA

Protein sequence

>MS.gene015171.t1

MAATTARVATTVMDLRVGMRTTVVRSESSDSDDGGGGMEDINKQIEEDPLLAFETLLTGVQIMEDINKQIEDDPLLAFETLLTGVQSYSIRTLLQELKTLMDSSSDLDHLVSNHESKLKLISLFHGLNQHRGLLPSDVKEFVEIVQNFFNVNIVKQDTSQQVLRKHNQLLDSKTDLMNKLRSAKSTQTQIDSESSTANAQIHKLSLQIDDLVKQRDDLKSVVNKCDVQKEKLMANALNGHNKVKSYFLIVLPWYLLRSVLFDNVVIEEVLHYLNKLLHIRRYESLMLIQSMKKRNQLQFGLVVRYKMVKVVVAESISIREVLSVDNQLAVKKQFLDIIPDENYPAEFFYRLRWDECNRWQHQICALYKKADLDCSAEYICHVYHQKEIENGMHVPLPKAANSGAKDFPRTVLSDHLEIRLFERLMQERENWEKVEGNENLDEVLAAESLSIRKVLSINKQLKVNKQFLDIIPEENYPAEFSYRSRVILLFKLIEGADVCIFGMPERRTKCGEALRTFVYHEILIRYLDFCNKRGFSTCYIWTCAPSKKGDDYILYCHPEEQKTPKNDKLRRWYLLMLKNATEENIVVGLTNIHDHFFLPTEKGNSKVTAFRLPYFEGDCWCGNAMEVAKTFEKESVGDYEKLLKQVSNRTLKDMGHAKPSKETLVMQKVGQNILPTRENFLIAHLQYSCLHCREVIVSGKRWFYTECKKFQECERCHSYDQHTSKNGEVHTLCQAVVDDIPSNTKHNDIVLESRLFGNRDNFLIFCQKSQFQFDTLRRAKYSSMMILYHLHNPNAMTQNEHQLTQNCSTQMVKLLNVLKHASQCRRRASNAEPCSHPNCSQIKKLFYPASKCKIRLNEGCQHCKKIWFILTSHSRNCKDLECRIPRCSDMKNHVEQKSVHSESCRRAEVLESDGAIVGQ