AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015232

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015232.t1 MTR_5g015950 94.420 448 25 0 1 448 1 448 0.0 861
MS.gene015232.t1 MTR_3g053270 94.420 448 25 0 1 448 1 448 0.0 861
MS.gene015232.t1 MTR_4g095500 67.316 462 121 9 1 448 25 470 0.0 591
MS.gene015232.t1 MTR_2g089100 44.804 433 195 9 28 448 45 445 7.67e-123 365
MS.gene015232.t1 MTR_4g097080 26.573 429 264 7 24 447 122 504 5.77e-48 172
MS.gene015232.t1 MTR_5g015490 27.033 418 260 9 35 447 114 491 5.25e-43 158
MS.gene015232.t1 MTR_1g029420 26.506 415 257 6 33 445 223 591 5.40e-40 151
MS.gene015232.t1 MTR_3g089055 27.251 422 245 8 33 445 201 569 7.06e-40 150
MS.gene015232.t1 MTR_3g089055 27.251 422 245 8 33 445 196 564 7.29e-40 150
MS.gene015232.t1 MTR_2g099110 26.959 434 243 13 34 447 73 452 1.57e-36 139
MS.gene015232.t1 MTR_5g094450 24.773 440 261 11 21 445 147 531 6.36e-36 139
MS.gene015232.t1 MTR_2g082090 26.478 423 249 10 32 445 209 578 2.88e-35 138
MS.gene015232.t1 MTR_3g056110 25.000 424 254 11 32 445 172 541 8.03e-35 136
MS.gene015232.t1 MTR_5g097480 25.754 431 242 12 32 445 174 543 3.18e-34 134
MS.gene015232.t1 MTR_4g133660 25.349 430 248 11 32 446 172 543 1.23e-32 130
MS.gene015232.t1 MTR_8g442410 25.837 418 253 12 36 445 156 524 3.71e-32 129
MS.gene015232.t1 MTR_8g020840 26.168 428 252 12 33 445 169 547 7.10e-31 125
MS.gene015232.t1 MTR_4g064150 23.934 422 272 10 32 448 358 735 2.30e-30 124
MS.gene015232.t1 MTR_2g026250 25.476 420 258 11 32 445 225 595 2.34e-29 121
MS.gene015232.t1 MTR_3g065980 25.935 428 238 10 36 445 173 539 5.27e-29 119
MS.gene015232.t1 MTR_7g027190 25.298 419 259 11 35 445 300 672 1.09e-28 119
MS.gene015232.t1 MTR_4g104020 27.358 424 244 15 34 445 148 519 5.47e-28 116
MS.gene015232.t1 MTR_4g064180 24.821 419 267 15 32 446 251 625 9.29e-28 116
MS.gene015232.t1 MTR_2g097410 22.619 420 278 9 32 448 368 743 5.52e-27 114
MS.gene015232.t1 MTR_4g064120 24.344 419 269 14 32 446 251 625 1.61e-26 112
MS.gene015232.t1 MTR_4g064160 24.645 422 265 12 32 448 313 686 6.87e-25 108
MS.gene015232.t1 MTR_4g102790 22.857 420 269 12 35 447 292 663 5.59e-24 105
MS.gene015232.t1 MTR_3g022830 24.312 436 278 11 36 445 26 435 1.23e-23 103
MS.gene015232.t1 MTR_4g064200 23.150 419 267 12 35 448 284 652 3.27e-23 103
MS.gene015232.t1 MTR_4g077760 26.366 421 251 13 30 445 188 554 6.01e-22 99.0
MS.gene015232.t1 MTR_7g062120 21.905 420 279 9 32 448 369 742 9.14e-22 99.0
MS.gene015232.t1 MTR_7g057230 25.000 444 256 12 9 445 283 656 2.95e-21 97.1
MS.gene015232.t1 MTR_2g097310 22.275 422 273 11 32 448 269 640 3.03e-21 97.1
MS.gene015232.t1 MTR_7g074650 22.330 412 259 12 38 447 441 793 4.15e-21 96.7
MS.gene015232.t1 MTR_2g097473 21.968 437 267 12 27 448 279 656 6.65e-21 95.9
MS.gene015232.t1 MTR_2g097463 23.185 427 274 12 27 448 280 657 1.22e-20 95.1
MS.gene015232.t1 MTR_5g009080 23.377 462 263 13 35 445 56 477 1.34e-20 94.4
MS.gene015232.t1 MTR_4g076140 22.887 485 291 15 9 445 19 468 3.16e-20 93.2
MS.gene015232.t1 MTR_2g097467 22.596 416 272 11 35 448 289 656 3.35e-20 94.0
MS.gene015232.t1 MTR_1g069725 22.169 415 258 12 35 445 109 462 1.24e-18 88.6
MS.gene015232.t1 MTR_8g093070 23.598 428 245 14 35 448 139 498 2.76e-16 81.3
MS.gene015232.t1 MTR_2g097380 21.308 413 239 13 42 448 231 563 9.46e-16 79.7
MS.gene015232.t1 MTR_1g096030 23.230 452 250 15 22 445 76 458 2.91e-15 78.2
MS.gene015232.t1 MTR_7g109580 23.220 323 199 9 129 445 274 553 5.18e-14 74.3
MS.gene015232.t1 MTR_3g072710 21.646 328 207 7 126 445 214 499 3.43e-13 71.6
MS.gene015232.t1 MTR_5g058860 23.168 423 268 15 35 445 119 496 4.38e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015232.t1 AT3G49950 56.522 437 150 9 14 447 10 409 4.45e-167 476
MS.gene015232.t1 AT5G67411 55.066 227 75 4 163 387 1 202 4.72e-75 234
MS.gene015232.t1 AT4G37650 27.716 451 268 12 14 448 123 531 3.28e-43 159
MS.gene015232.t1 AT1G21450 26.241 423 249 9 33 445 223 592 2.34e-34 135
MS.gene015232.t1 AT5G48150 26.988 415 250 7 36 445 123 489 3.16e-34 134
MS.gene015232.t1 AT5G48150 26.988 415 250 7 36 445 123 489 3.16e-34 134
MS.gene015232.t1 AT5G48150 26.988 415 250 7 36 445 123 489 3.16e-34 134
MS.gene015232.t1 AT5G48150 26.988 415 250 7 36 445 123 489 3.16e-34 134
MS.gene015232.t1 AT2G04890 25.000 416 257 7 32 445 50 412 5.03e-34 132
MS.gene015232.t1 AT5G17490 26.087 414 247 6 34 445 159 515 4.23e-33 131
MS.gene015232.t1 AT1G50600 24.645 422 258 9 32 445 156 525 1.43e-32 130
MS.gene015232.t1 AT1G50600 25.118 422 256 10 32 445 231 600 2.31e-32 130
MS.gene015232.t1 AT1G50600 25.118 422 256 10 32 445 227 596 2.41e-32 130
MS.gene015232.t1 AT3G03450 26.214 412 251 8 36 445 184 544 6.52e-32 128
MS.gene015232.t1 AT4G17230 24.009 429 256 9 32 447 155 526 9.89e-30 121
MS.gene015232.t1 AT4G17230 24.009 429 256 9 32 447 155 526 9.89e-30 121
MS.gene015232.t1 AT2G29065 26.077 418 266 11 35 448 252 630 4.39e-29 120
MS.gene015232.t1 AT2G01570 24.939 413 250 13 36 445 225 580 3.65e-27 114
MS.gene015232.t1 AT3G13840 26.179 424 242 13 33 445 146 509 7.90e-27 113
MS.gene015232.t1 AT1G14920 24.578 415 249 12 36 445 173 528 9.60e-27 113
MS.gene015232.t1 AT5G52510 22.811 434 258 11 31 445 264 639 2.87e-25 109
MS.gene015232.t1 AT1G50420 24.123 456 267 14 35 445 57 478 1.57e-24 106
MS.gene015232.t1 AT1G66350 24.455 413 246 10 36 445 156 505 4.83e-24 105
MS.gene015232.t1 AT2G37650 23.168 423 266 14 32 447 332 702 7.68e-22 99.0
MS.gene015232.t1 AT2G37650 23.168 423 266 14 32 447 344 714 1.08e-21 98.6
MS.gene015232.t1 AT3G46600 23.571 420 271 11 32 448 1 373 1.42e-21 96.3
MS.gene015232.t1 AT3G46600 23.474 426 264 11 32 448 209 581 5.57e-21 96.3
MS.gene015232.t1 AT1G55580 23.690 439 275 13 32 445 41 444 7.21e-21 95.1
MS.gene015232.t1 AT3G46600 23.641 423 267 11 32 448 177 549 8.37e-21 95.5
MS.gene015232.t1 AT5G59450 23.165 436 281 10 20 448 212 600 1.32e-20 95.1
MS.gene015232.t1 AT1G07520 23.788 433 256 14 35 448 154 531 1.42e-20 94.7
MS.gene015232.t1 AT1G07520 23.788 433 256 14 35 448 154 531 1.42e-20 94.7
MS.gene015232.t1 AT1G07520 23.788 433 256 14 35 448 318 695 2.09e-20 94.7
MS.gene015232.t1 AT1G07520 23.788 433 256 14 35 448 319 696 2.09e-20 94.7
MS.gene015232.t1 AT1G07530 21.140 421 282 11 32 448 393 767 5.49e-19 90.5
MS.gene015232.t1 AT2G29060 21.934 424 275 10 32 447 281 656 1.86e-18 88.6
MS.gene015232.t1 AT2G29060 21.934 424 275 10 32 447 318 693 1.99e-18 88.6
MS.gene015232.t1 AT1G63100 23.653 334 199 9 127 445 336 628 2.46e-18 88.2
MS.gene015232.t1 AT1G63100 23.653 334 199 9 127 445 361 653 2.89e-18 87.8
MS.gene015232.t1 AT5G66770 26.370 292 176 8 126 414 294 549 3.63e-17 84.3
MS.gene015232.t1 AT5G41920 22.782 417 256 14 35 445 43 399 2.52e-16 80.9
MS.gene015232.t1 AT3G50650 24.706 340 190 9 126 445 248 541 1.06e-12 70.5

Find 73 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTTCTTACGACGAATT+AGG 0.219981 5.4:+9468385 MS.gene015232:CDS
CGACGAATTAGGTTCAAAAT+TGG 0.230348 5.4:+9468396 MS.gene015232:CDS
AATCCGCGTTTAATTATCTT+TGG 0.234805 5.4:+9468764 MS.gene015232:CDS
GCGGTTTGTGTAACTGCTTC+TGG 0.248870 5.4:-9468046 None:intergenic
GCAGCTGTTAGCTTGATTAA+AGG 0.266223 5.4:-9468307 None:intergenic
TTTCAGTGAGGATTCGGTTT+TGG 0.295734 5.4:+9468972 MS.gene015232:CDS
AGATCAAGCATTGGTGGAAT+TGG 0.305832 5.4:-9468367 None:intergenic
TAAAACAAGAAACGTGATTA+TGG 0.317994 5.4:+9468429 MS.gene015232:CDS
AAGTGTAGTAGAGGGTTATT+AGG 0.328746 5.4:-9467824 None:intergenic
GCATTGGTGGAATTGGAATA+TGG 0.329573 5.4:-9468360 None:intergenic
ATGAGCTTCTTGTGCTTACT+TGG 0.341746 5.4:+9469049 MS.gene015232:CDS
AATGTAAATAGAGTTTCTTC+AGG 0.361286 5.4:-9468586 None:intergenic
AGATTTAACATCAAGTAGTT+TGG 0.367518 5.4:+9468729 MS.gene015232:CDS
CACTAGCACAACAAATCCTT+TGG 0.378101 5.4:+9467915 MS.gene015232:CDS
GCTTCCTGCTAGGCGTTGAT+TGG 0.395425 5.4:-9467972 None:intergenic
TTAACACCTTGGCATCGTTT+CGG 0.442385 5.4:+9468148 MS.gene015232:CDS
TCCACCAAGACGACTATTGT+TGG 0.444785 5.4:-9468697 None:intergenic
TCTCATTCGTTGCTCCCACT+TGG 0.447629 5.4:-9468926 None:intergenic
ATGATAGTTATAACTATTTG+CGG 0.450034 5.4:-9468065 None:intergenic
AGTTTGTTTCAGTGAGGATT+CGG 0.453807 5.4:+9468966 MS.gene015232:CDS
GAACAAGGACTAATAACTAC+AGG 0.460908 5.4:-9467788 None:intergenic
TAATAAATCTCATGAAGCAT+TGG 0.465324 5.4:+9468531 MS.gene015232:CDS
CTGAGAGTGTTGTGTTGTTA+AGG 0.465694 5.4:-9467940 None:intergenic
ATGTTATCTTTGCTTCTGCT+TGG 0.471769 5.4:+9469082 MS.gene015232:CDS
TAGTAGAGGGTTATTAGGTG+TGG 0.478477 5.4:-9467819 None:intergenic
GGTATGAAGCTGAAATTTGT+TGG 0.481427 5.4:+9468842 MS.gene015232:CDS
GCAATTCTAGAAGCTACTAA+AGG 0.483791 5.4:+9468190 MS.gene015232:CDS
ATTGTTACTTTCAATTGCAC+TGG 0.486642 5.4:-9467888 None:intergenic
GTCTCCAATCAACGCCTAGC+AGG 0.489729 5.4:+9467968 MS.gene015232:CDS
GAGTAACTGCTCCATGCAAT+TGG 0.490828 5.4:-9467855 None:intergenic
AGAAAACTCGTGTGTTTGTA+TGG 0.500579 5.4:-9468098 None:intergenic
CTTCTTGTGCTTACTTGGAA+AGG 0.503343 5.4:+9469054 MS.gene015232:CDS
TGATGAACATGCAGCTGGAT+GGG 0.514109 5.4:+9469011 MS.gene015232:CDS
TTCTGGAATATTGCACCTAC+AGG 0.516060 5.4:-9468029 None:intergenic
GAGAATGTGATAGCATATGA+AGG 0.519545 5.4:+9468871 MS.gene015232:CDS
AGATCCAACAATAGTCGTCT+TGG 0.519549 5.4:+9468693 MS.gene015232:CDS
TCCAACAATAGTCGTCTTGG+TGG 0.526010 5.4:+9468696 MS.gene015232:CDS
AATGTGTCCACCGTGTCAAA+CGG 0.536257 5.4:-9468790 None:intergenic
ACTAGCACAACAAATCCTTT+GGG 0.538819 5.4:+9467916 MS.gene015232:CDS
CTTCAACAACGCCAATTGCA+TGG 0.549170 5.4:+9467844 MS.gene015232:CDS
AGTAGAGGGTTATTAGGTGT+GGG 0.549560 5.4:-9467818 None:intergenic
ATGCTTGATGAACATGCAGC+TGG 0.552523 5.4:+9469006 MS.gene015232:CDS
CGTTGTTGAAGTGTAGTAGA+GGG 0.553431 5.4:-9467832 None:intergenic
GTGGGAGCAACGAATGAGAA+AGG 0.554477 5.4:+9468930 MS.gene015232:CDS
GATGAACATGCAGCTGGATG+GGG 0.559473 5.4:+9469012 MS.gene015232:CDS
TGAAGCTGAAATTTGTTGGA+AGG 0.560306 5.4:+9468846 MS.gene015232:CDS
TAAGAAAGATCAAGCATTGG+TGG 0.560629 5.4:-9468373 None:intergenic
GTTTCTTCAACTTATTCAGA+CGG 0.564374 5.4:+9468463 MS.gene015232:CDS
CTCGAATGAAGCTTCCTGCT+AGG 0.577569 5.4:-9467982 None:intergenic
TTGATGAACATGCAGCTGGA+TGG 0.579446 5.4:+9469010 MS.gene015232:CDS
TTGTGTTGTTAAGGACCCAA+AGG 0.585571 5.4:-9467931 None:intergenic
GCAATGGCGTCGATTAGTGT+AGG 0.586251 5.4:-9468265 None:intergenic
TGCCTTTGTTTACTCCCTCG+TGG 0.588128 5.4:-9468817 None:intergenic
GCGTTGTTGAAGTGTAGTAG+AGG 0.604252 5.4:-9467833 None:intergenic
GCTGTTAGCTTGATTAAAGG+AGG 0.610301 5.4:-9468304 None:intergenic
AACCTCATGATGATTTGCAA+TGG 0.610435 5.4:-9468281 None:intergenic
CAGCTGCAGTTAATAACTGT+AGG 0.611302 5.4:+9468323 MS.gene015232:CDS
AATGTTGCACTTGCACTCGT+AGG 0.611711 5.4:-9468507 None:intergenic
CGCCATTGCAAATCATCATG+AGG 0.616800 5.4:+9468279 MS.gene015232:CDS
TTGGATACCGTTTGACACGG+TGG 0.625357 5.4:+9468783 MS.gene015232:CDS
TCTTTGGATACCGTTTGACA+CGG 0.625561 5.4:+9468780 MS.gene015232:CDS
AGAATGTGATAGCATATGAA+GGG 0.625664 5.4:+9468872 MS.gene015232:CDS
GAGGGAGTAAACAAAGGCAG+TGG 0.640189 5.4:+9468821 MS.gene015232:CDS
TCAAGGAGTTTGTTTCAGTG+AGG 0.641089 5.4:+9468960 MS.gene015232:CDS
GGTGTGGGAAATTCTGAACA+AGG 0.649547 5.4:-9467803 None:intergenic
TCGTAAGAAAGATCAAGCAT+TGG 0.656089 5.4:-9468376 None:intergenic
GAGTCGAGTCTAAAACCAAG+TGG 0.658958 5.4:+9468911 MS.gene015232:CDS
AACAAGGACTAATAACTACA+GGG 0.659957 5.4:-9467787 None:intergenic
AGTCGAGTCTAAAACCAAGT+GGG 0.662079 5.4:+9468912 MS.gene015232:CDS
TACCACGAGGGAGTAAACAA+AGG 0.668759 5.4:+9468815 MS.gene015232:CDS
GTGTAACCGAAACGATGCCA+AGG 0.704462 5.4:-9468154 None:intergenic
CGCGTGCAAGAAGATCCTGT+AGG 0.763698 5.4:+9468014 MS.gene015232:CDS
TATCCAAAGATAATTAAACG+CGG 0.789557 5.4:-9468767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATAGTTATAACTATTTG+CGG - chr5.4:9468068-9468087 None:intergenic 20.0%
!!! ATTTTATTGATTTAACACCT+TGG + chr5.4:9468137-9468156 MS.gene015232:CDS 20.0%
! AATGTAAATAGAGTTTCTTC+AGG - chr5.4:9468589-9468608 None:intergenic 25.0%
! AGATTTAACATCAAGTAGTT+TGG + chr5.4:9468729-9468748 MS.gene015232:CDS 25.0%
! TAAAACAAGAAACGTGATTA+TGG + chr5.4:9468429-9468448 MS.gene015232:CDS 25.0%
! TAATAAATCTCATGAAGCAT+TGG + chr5.4:9468531-9468550 MS.gene015232:CDS 25.0%
! TATCCAAAGATAATTAAACG+CGG - chr5.4:9468770-9468789 None:intergenic 25.0%
AACAAGGACTAATAACTACA+GGG - chr5.4:9467790-9467809 None:intergenic 30.0%
AATCCGCGTTTAATTATCTT+TGG + chr5.4:9468764-9468783 MS.gene015232:CDS 30.0%
AGAATGTGATAGCATATGAA+GGG + chr5.4:9468872-9468891 MS.gene015232:CDS 30.0%
GTTTCTTCAACTTATTCAGA+CGG + chr5.4:9468463-9468482 MS.gene015232:CDS 30.0%
!! ATTGTTACTTTCAATTGCAC+TGG - chr5.4:9467891-9467910 None:intergenic 30.0%
AAGTGTAGTAGAGGGTTATT+AGG - chr5.4:9467827-9467846 None:intergenic 35.0%
ACTAGCACAACAAATCCTTT+GGG + chr5.4:9467916-9467935 MS.gene015232:CDS 35.0%
AGAAAACTCGTGTGTTTGTA+TGG - chr5.4:9468101-9468120 None:intergenic 35.0%
ATGTTATCTTTGCTTCTGCT+TGG + chr5.4:9469082-9469101 MS.gene015232:CDS 35.0%
CGACGAATTAGGTTCAAAAT+TGG + chr5.4:9468396-9468415 MS.gene015232:CDS 35.0%
GAACAAGGACTAATAACTAC+AGG - chr5.4:9467791-9467810 None:intergenic 35.0%
GAGAATGTGATAGCATATGA+AGG + chr5.4:9468871-9468890 MS.gene015232:CDS 35.0%
GATCTTTCTTACGACGAATT+AGG + chr5.4:9468385-9468404 MS.gene015232:CDS 35.0%
GGTATGAAGCTGAAATTTGT+TGG + chr5.4:9468842-9468861 MS.gene015232:CDS 35.0%
TCGTAAGAAAGATCAAGCAT+TGG - chr5.4:9468379-9468398 None:intergenic 35.0%
! AACCTCATGATGATTTGCAA+TGG - chr5.4:9468284-9468303 None:intergenic 35.0%
! AGTTTGTTTCAGTGAGGATT+CGG + chr5.4:9468966-9468985 MS.gene015232:CDS 35.0%
! GCAATTCTAGAAGCTACTAA+AGG + chr5.4:9468190-9468209 MS.gene015232:CDS 35.0%
!! CGAAGTTTTTAGAAGCTGTA+CGG + chr5.4:9468665-9468684 MS.gene015232:CDS 35.0%
!! TAAGAAAGATCAAGCATTGG+TGG - chr5.4:9468376-9468395 None:intergenic 35.0%
!! TGAAGCTGAAATTTGTTGGA+AGG + chr5.4:9468846-9468865 MS.gene015232:CDS 35.0%
AGATCCAACAATAGTCGTCT+TGG + chr5.4:9468693-9468712 MS.gene015232:CDS 40.0%
AGTAGAGGGTTATTAGGTGT+GGG - chr5.4:9467821-9467840 None:intergenic 40.0%
ATGAGCTTCTTGTGCTTACT+TGG + chr5.4:9469049-9469068 MS.gene015232:CDS 40.0%
CACTAGCACAACAAATCCTT+TGG + chr5.4:9467915-9467934 MS.gene015232:CDS 40.0%
CAGCTGCAGTTAATAACTGT+AGG + chr5.4:9468323-9468342 MS.gene015232:CDS 40.0%
CGTTGTTGAAGTGTAGTAGA+GGG - chr5.4:9467835-9467854 None:intergenic 40.0%
CTTCTTGTGCTTACTTGGAA+AGG + chr5.4:9469054-9469073 MS.gene015232:CDS 40.0%
TAGTAGAGGGTTATTAGGTG+TGG - chr5.4:9467822-9467841 None:intergenic 40.0%
TCTTTGGATACCGTTTGACA+CGG + chr5.4:9468780-9468799 MS.gene015232:CDS 40.0%
TTAACACCTTGGCATCGTTT+CGG + chr5.4:9468148-9468167 MS.gene015232:CDS 40.0%
! AGTCGAGTCTAAAACCAAGT+GGG + chr5.4:9468912-9468931 MS.gene015232:CDS 40.0%
! GCAGCTGTTAGCTTGATTAA+AGG - chr5.4:9468310-9468329 None:intergenic 40.0%
! GCATTGGTGGAATTGGAATA+TGG - chr5.4:9468363-9468382 None:intergenic 40.0%
! GCTGTTAGCTTGATTAAAGG+AGG - chr5.4:9468307-9468326 None:intergenic 40.0%
! TCAAGGAGTTTGTTTCAGTG+AGG + chr5.4:9468960-9468979 MS.gene015232:CDS 40.0%
! TGGACACATTTTTACCACGA+GGG + chr5.4:9468803-9468822 MS.gene015232:CDS 40.0%
! TTGTGTTGTTAAGGACCCAA+AGG - chr5.4:9467934-9467953 None:intergenic 40.0%
!! AGATCAAGCATTGGTGGAAT+TGG - chr5.4:9468370-9468389 None:intergenic 40.0%
!! ATGAGAAAGGCACGTTTTCA+AGG + chr5.4:9468943-9468962 MS.gene015232:CDS 40.0%
!! CTGAGAGTGTTGTGTTGTTA+AGG - chr5.4:9467943-9467962 None:intergenic 40.0%
!! TTCTGGAATATTGCACCTAC+AGG - chr5.4:9468032-9468051 None:intergenic 40.0%
!! TTTCAGTGAGGATTCGGTTT+TGG + chr5.4:9468972-9468991 MS.gene015232:CDS 40.0%
!!! GATTCGGTTTTGGAGGTTAA+GGG + chr5.4:9468982-9469001 MS.gene015232:CDS 40.0%
AATGTGTCCACCGTGTCAAA+CGG - chr5.4:9468793-9468812 None:intergenic 45.0%
AATGTTGCACTTGCACTCGT+AGG - chr5.4:9468510-9468529 None:intergenic 45.0%
ATGCTTGATGAACATGCAGC+TGG + chr5.4:9469006-9469025 MS.gene015232:CDS 45.0%
CGCCATTGCAAATCATCATG+AGG + chr5.4:9468279-9468298 MS.gene015232:CDS 45.0%
CTTCAACAACGCCAATTGCA+TGG + chr5.4:9467844-9467863 MS.gene015232:CDS 45.0%
GAGTAACTGCTCCATGCAAT+TGG - chr5.4:9467858-9467877 None:intergenic 45.0%
GCGTTGTTGAAGTGTAGTAG+AGG - chr5.4:9467836-9467855 None:intergenic 45.0%
GGTGTGGGAAATTCTGAACA+AGG - chr5.4:9467806-9467825 None:intergenic 45.0%
TACCACGAGGGAGTAAACAA+AGG + chr5.4:9468815-9468834 MS.gene015232:CDS 45.0%
TCCAACAATAGTCGTCTTGG+TGG + chr5.4:9468696-9468715 MS.gene015232:CDS 45.0%
TCCACCAAGACGACTATTGT+TGG - chr5.4:9468700-9468719 None:intergenic 45.0%
TGATGAACATGCAGCTGGAT+GGG + chr5.4:9469011-9469030 MS.gene015232:CDS 45.0%
TTGATGAACATGCAGCTGGA+TGG + chr5.4:9469010-9469029 MS.gene015232:CDS 45.0%
! GAGTCGAGTCTAAAACCAAG+TGG + chr5.4:9468911-9468930 MS.gene015232:CDS 45.0%
! GTGGACACATTTTTACCACG+AGG + chr5.4:9468802-9468821 MS.gene015232:CDS 45.0%
!!! GGATTCGGTTTTGGAGGTTA+AGG + chr5.4:9468981-9469000 MS.gene015232:CDS 45.0%
CTCGAATGAAGCTTCCTGCT+AGG - chr5.4:9467985-9468004 None:intergenic 50.0%
GAGGGAGTAAACAAAGGCAG+TGG + chr5.4:9468821-9468840 MS.gene015232:CDS 50.0%
GATGAACATGCAGCTGGATG+GGG + chr5.4:9469012-9469031 MS.gene015232:CDS 50.0%
GCGGTTTGTGTAACTGCTTC+TGG - chr5.4:9468049-9468068 None:intergenic 50.0%
GTGGGAGCAACGAATGAGAA+AGG + chr5.4:9468930-9468949 MS.gene015232:CDS 50.0%
GTGTAACCGAAACGATGCCA+AGG - chr5.4:9468157-9468176 None:intergenic 50.0%
TCTCATTCGTTGCTCCCACT+TGG - chr5.4:9468929-9468948 None:intergenic 50.0%
TTGGATACCGTTTGACACGG+TGG + chr5.4:9468783-9468802 MS.gene015232:CDS 50.0%
! TGCCTTTGTTTACTCCCTCG+TGG - chr5.4:9468820-9468839 None:intergenic 50.0%
!! CAGTGAGGATTCGGTTTTGG+AGG + chr5.4:9468975-9468994 MS.gene015232:CDS 50.0%
!! GCAATGGCGTCGATTAGTGT+AGG - chr5.4:9468268-9468287 None:intergenic 50.0%
CGCGTGCAAGAAGATCCTGT+AGG + chr5.4:9468014-9468033 MS.gene015232:CDS 55.0%
GTCTCCAATCAACGCCTAGC+AGG + chr5.4:9467968-9467987 MS.gene015232:CDS 55.0%
!! GCTTCCTGCTAGGCGTTGAT+TGG - chr5.4:9467975-9467994 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 9467770 9469116 9467770 ID=MS.gene015232
chr5.4 mRNA 9467770 9469116 9467770 ID=MS.gene015232.t1;Parent=MS.gene015232
chr5.4 exon 9467770 9469116 9467770 ID=MS.gene015232.t1.exon1;Parent=MS.gene015232.t1
chr5.4 CDS 9467770 9469116 9467770 ID=cds.MS.gene015232.t1;Parent=MS.gene015232.t1
Gene Sequence

>MS.gene015232

ATGAACAAAAATCAAATCCCTGTAGTTATTAGTCCTTGTTCAGAATTTCCCACACCTAATAACCCTCTACTACACTTCAACAACGCCAATTGCATGGAGCAGTTACTCATTCACTGTGCCAGTGCAATTGAAAGTAACAATGCAACACTAGCACAACAAATCCTTTGGGTCCTTAACAACACAACACTCTCAGACGACGTCTCCAATCAACGCCTAGCAGGAAGCTTCATTCGAGCTCTTACAACGCGTGCAAGAAGATCCTGTAGGTGCAATATTCCAGAAGCAGTTACACAAACCGCAAATAGTTATAACTATCATCACAATCTCGCCATACAAACACACGAGTTTTCTGTCATTGAGTTAGCAAATTTTATTGATTTAACACCTTGGCATCGTTTCGGTTACACAGCAGCTAATTCTGCAATTCTAGAAGCTACTAAAGGATTTTCAGTTATTCACATTGTTGATTTGAGTTTAACACACTGCATGCAGATTCCTACACTAATCGACGCCATTGCAAATCATCATGAGGTTCCTCCTTTAATCAAGCTAACAGCTGCAGTTAATAACTGTAGGAATAAGAATATTAACCATATTCCAATTCCACCAATGCTTGATCTTTCTTACGACGAATTAGGTTCAAAATTGGTTAATTTTGCTAAAACAAGAAACGTGATTATGGAATTCAAAGCTGTTTCTTCAACTTATTCAGACGGATTTGCTTCGTTGATTGAACACCTACGAGTGCAAGTGCAACATTTTAATAAATCTCATGAAGCATTGGTTATAAACTGTCACATGATGCTTCATTATATTCCTGAAGAAACTCTATTTACATTTAAAGATACAAATTCAAATTCAAATTTGAATTTAAACTTTTGTTCATCGCTGCGCTCGAAGTTTTTAGAAGCTGTACGGAGTTTAGATCCAACAATAGTCGTCTTGGTGGATGAAGATGCAGATTTAACATCAAGTAGTTTGGTTAGTAGACTAAAATCCGCGTTTAATTATCTTTGGATACCGTTTGACACGGTGGACACATTTTTACCACGAGGGAGTAAACAAAGGCAGTGGTATGAAGCTGAAATTTGTTGGAAGGTTGAGAATGTGATAGCATATGAAGGGATTCAGAGAGTTGAGAGAGTCGAGTCTAAAACCAAGTGGGAGCAACGAATGAGAAAGGCACGTTTTCAAGGAGTTTGTTTCAGTGAGGATTCGGTTTTGGAGGTTAAGGGTATGCTTGATGAACATGCAGCTGGATGGGGATTGAAGAAAGAAGATGAGCTTCTTGTGCTTACTTGGAAAGGACATAATGTTATCTTTGCTTCTGCTTGGTTACCTTCTTGA
Protein sequence

>MS.gene015232.t1

MNKNQIPVVISPCSEFPTPNNPLLHFNNANCMEQLLIHCASAIESNNATLAQQILWVLNNTTLSDDVSNQRLAGSFIRALTTRARRSCRCNIPEAVTQTANSYNYHHNLAIQTHEFSVIELANFIDLTPWHRFGYTAANSAILEATKGFSVIHIVDLSLTHCMQIPTLIDAIANHHEVPPLIKLTAAVNNCRNKNINHIPIPPMLDLSYDELGSKLVNFAKTRNVIMEFKAVSSTYSDGFASLIEHLRVQVQHFNKSHEALVINCHMMLHYIPEETLFTFKDTNSNSNLNLNFCSSLRSKFLEAVRSLDPTIVVLVDEDADLTSSSLVSRLKSAFNYLWIPFDTVDTFLPRGSKQRQWYEAEICWKVENVIAYEGIQRVERVESKTKWEQRMRKARFQGVCFSEDSVLEVKGMLDEHAAGWGLKKEDELLVLTWKGHNVIFASAWLPS