Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015247.t1 | XP_024632639.1 | 74.3 | 307 | 78 | 1 | 1 | 306 | 1 | 307 | 1.70E-132 | 482.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015247.t1 | Q9SZL8 | 36.6 | 303 | 186 | 4 | 7 | 304 | 73 | 374 | 6.2e-54 | 213.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015247.t1 | A0A2Z6MT37 | 74.5 | 306 | 77 | 1 | 1 | 305 | 1 | 306 | 9.0e-131 | 476.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene015247.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015247.t1 | MTR_5g039760 | 50.256 | 195 | 71 | 3 | 9 | 201 | 12 | 182 | 1.26e-57 | 187 |
MS.gene015247.t1 | MTR_7g074790 | 52.071 | 169 | 62 | 2 | 7 | 174 | 10 | 160 | 8.30e-48 | 163 |
MS.gene015247.t1 | MTR_6g051425 | 34.066 | 273 | 170 | 4 | 9 | 273 | 19 | 289 | 2.55e-42 | 152 |
MS.gene015247.t1 | MTR_0402s0040 | 44.262 | 183 | 98 | 3 | 4 | 183 | 23 | 204 | 1.37e-41 | 153 |
MS.gene015247.t1 | MTR_0558s0020 | 34.109 | 258 | 149 | 5 | 10 | 246 | 39 | 296 | 1.81e-40 | 145 |
MS.gene015247.t1 | MTR_4g102720 | 40.000 | 165 | 66 | 1 | 7 | 171 | 7 | 138 | 2.90e-35 | 130 |
MS.gene015247.t1 | MTR_6g090505 | 32.584 | 267 | 154 | 5 | 42 | 282 | 11 | 277 | 3.45e-34 | 130 |
MS.gene015247.t1 | MTR_7g061980 | 52.632 | 114 | 53 | 1 | 3 | 115 | 6 | 119 | 9.58e-34 | 122 |
MS.gene015247.t1 | MTR_8g446020 | 36.364 | 176 | 110 | 1 | 73 | 246 | 81 | 256 | 4.48e-31 | 119 |
MS.gene015247.t1 | MTR_5g015480 | 46.032 | 126 | 65 | 2 | 3 | 125 | 52 | 177 | 1.38e-28 | 113 |
MS.gene015247.t1 | MTR_1g070355 | 29.435 | 248 | 163 | 5 | 8 | 247 | 75 | 318 | 3.44e-27 | 114 |
MS.gene015247.t1 | MTR_1g083640 | 30.000 | 230 | 140 | 5 | 13 | 221 | 57 | 286 | 7.83e-27 | 108 |
MS.gene015247.t1 | MTR_7g446520 | 28.761 | 226 | 147 | 1 | 11 | 236 | 92 | 303 | 6.18e-23 | 99.0 |
MS.gene015247.t1 | MTR_5g076070 | 26.068 | 234 | 167 | 3 | 5 | 234 | 51 | 282 | 5.74e-22 | 95.5 |
MS.gene015247.t1 | MTR_2g070590 | 44.444 | 108 | 57 | 2 | 4 | 108 | 14 | 121 | 9.00e-22 | 90.5 |
MS.gene015247.t1 | MTR_7g113010 | 41.860 | 129 | 60 | 2 | 4 | 130 | 454 | 569 | 9.56e-21 | 94.7 |
MS.gene015247.t1 | MTR_4g035820 | 26.332 | 319 | 205 | 9 | 4 | 306 | 72 | 376 | 2.66e-20 | 93.6 |
MS.gene015247.t1 | MTR_6g017200 | 45.918 | 98 | 50 | 2 | 4 | 98 | 55 | 152 | 5.11e-20 | 86.7 |
MS.gene015247.t1 | MTR_7g446510 | 30.814 | 172 | 119 | 0 | 83 | 254 | 158 | 329 | 9.06e-20 | 90.1 |
MS.gene015247.t1 | MTR_7g446480 | 30.233 | 172 | 120 | 0 | 83 | 254 | 143 | 314 | 2.93e-19 | 88.2 |
MS.gene015247.t1 | MTR_2g099430 | 52.874 | 87 | 40 | 1 | 30 | 115 | 26 | 112 | 6.40e-19 | 82.4 |
MS.gene015247.t1 | MTR_1g057920 | 46.237 | 93 | 47 | 2 | 4 | 93 | 31 | 123 | 7.79e-19 | 82.4 |
MS.gene015247.t1 | MTR_0337s0040 | 32.168 | 143 | 95 | 1 | 73 | 213 | 82 | 224 | 2.09e-18 | 84.0 |
MS.gene015247.t1 | MTR_4g067290 | 44.118 | 102 | 54 | 3 | 7 | 106 | 56 | 156 | 9.08e-18 | 82.4 |
MS.gene015247.t1 | MTR_4g067290 | 44.118 | 102 | 54 | 3 | 7 | 106 | 56 | 156 | 9.56e-18 | 82.4 |
MS.gene015247.t1 | MTR_4g067290 | 44.118 | 102 | 54 | 3 | 7 | 106 | 76 | 176 | 1.59e-17 | 82.0 |
MS.gene015247.t1 | MTR_4g067290 | 44.118 | 102 | 54 | 3 | 7 | 106 | 76 | 176 | 1.60e-17 | 82.0 |
MS.gene015247.t1 | MTR_4g067290 | 44.118 | 102 | 54 | 3 | 7 | 106 | 74 | 174 | 1.76e-17 | 82.0 |
MS.gene015247.t1 | MTR_4g067290 | 44.118 | 102 | 54 | 3 | 7 | 106 | 116 | 216 | 2.56e-17 | 82.4 |
MS.gene015247.t1 | MTR_1g013060 | 28.293 | 205 | 139 | 4 | 7 | 204 | 24 | 227 | 4.01e-17 | 80.5 |
MS.gene015247.t1 | MTR_2g014100 | 29.293 | 198 | 119 | 6 | 11 | 187 | 48 | 245 | 1.84e-16 | 79.0 |
MS.gene015247.t1 | MTR_2g098880 | 42.991 | 107 | 57 | 3 | 7 | 109 | 61 | 167 | 2.65e-15 | 75.5 |
MS.gene015247.t1 | MTR_2g098880 | 42.991 | 107 | 57 | 3 | 7 | 109 | 73 | 179 | 3.80e-15 | 75.5 |
MS.gene015247.t1 | MTR_2g098920 | 39.815 | 108 | 62 | 3 | 1 | 106 | 74 | 180 | 5.20e-15 | 75.1 |
MS.gene015247.t1 | MTR_6g022080 | 29.655 | 145 | 98 | 2 | 19 | 159 | 97 | 241 | 3.90e-14 | 72.0 |
MS.gene015247.t1 | MTR_3g006370 | 40.777 | 103 | 58 | 3 | 7 | 106 | 50 | 152 | 3.25e-13 | 68.9 |
MS.gene015247.t1 | MTR_1g019850 | 32.353 | 136 | 84 | 2 | 4 | 137 | 67 | 196 | 5.20e-13 | 68.6 |
MS.gene015247.t1 | MTR_8g067580 | 52.308 | 65 | 15 | 2 | 63 | 127 | 3 | 51 | 1.48e-11 | 60.1 |
MS.gene015247.t1 | MTR_1g050985 | 45.455 | 66 | 33 | 2 | 72 | 134 | 34 | 99 | 3.41e-11 | 60.1 |
MS.gene015247.t1 | MTR_0853s0010 | 28.369 | 141 | 86 | 5 | 7 | 138 | 25 | 159 | 7.55e-11 | 60.8 |
MS.gene015247.t1 | MTR_0137s0040 | 44.286 | 70 | 36 | 2 | 2 | 68 | 31 | 100 | 9.98e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015247.t1 | AT4G38180 | 36.634 | 303 | 186 | 4 | 7 | 304 | 73 | 374 | 9.09e-61 | 210 |
MS.gene015247.t1 | AT4G15090 | 33.010 | 309 | 203 | 4 | 7 | 312 | 51 | 358 | 8.37e-47 | 172 |
MS.gene015247.t1 | AT4G15090 | 33.010 | 309 | 203 | 4 | 7 | 312 | 51 | 358 | 8.37e-47 | 172 |
MS.gene015247.t1 | AT4G15090 | 33.010 | 309 | 203 | 4 | 7 | 312 | 51 | 358 | 8.37e-47 | 172 |
MS.gene015247.t1 | AT4G15090 | 33.010 | 309 | 203 | 4 | 7 | 312 | 51 | 358 | 8.37e-47 | 172 |
MS.gene015247.t1 | AT4G15090 | 33.010 | 309 | 203 | 4 | 7 | 312 | 51 | 358 | 8.37e-47 | 172 |
MS.gene015247.t1 | AT1G76320 | 33.564 | 289 | 179 | 6 | 11 | 296 | 1 | 279 | 3.70e-43 | 160 |
MS.gene015247.t1 | AT1G76320 | 33.564 | 289 | 179 | 6 | 11 | 296 | 1 | 279 | 3.85e-43 | 160 |
MS.gene015247.t1 | AT1G76320 | 33.564 | 289 | 179 | 6 | 11 | 296 | 1 | 279 | 4.01e-43 | 160 |
MS.gene015247.t1 | AT1G76320 | 33.564 | 289 | 179 | 6 | 11 | 296 | 1 | 279 | 4.01e-43 | 160 |
MS.gene015247.t1 | AT3G06250 | 30.795 | 302 | 166 | 6 | 7 | 305 | 190 | 451 | 4.62e-42 | 158 |
MS.gene015247.t1 | AT3G06250 | 38.235 | 102 | 48 | 3 | 7 | 106 | 28 | 116 | 3.08e-12 | 68.9 |
MS.gene015247.t1 | AT3G06250 | 30.795 | 302 | 166 | 6 | 7 | 305 | 190 | 451 | 4.62e-42 | 158 |
MS.gene015247.t1 | AT3G06250 | 38.235 | 102 | 48 | 3 | 7 | 106 | 28 | 116 | 3.08e-12 | 68.9 |
MS.gene015247.t1 | AT3G06250 | 30.795 | 302 | 166 | 6 | 7 | 305 | 190 | 451 | 4.62e-42 | 158 |
MS.gene015247.t1 | AT3G06250 | 38.235 | 102 | 48 | 3 | 7 | 106 | 28 | 116 | 3.08e-12 | 68.9 |
MS.gene015247.t1 | AT2G27110 | 34.667 | 300 | 165 | 6 | 7 | 303 | 49 | 320 | 9.97e-42 | 157 |
MS.gene015247.t1 | AT2G27110 | 34.667 | 300 | 165 | 6 | 7 | 303 | 49 | 320 | 9.97e-42 | 157 |
MS.gene015247.t1 | AT5G18960 | 30.464 | 302 | 170 | 7 | 7 | 305 | 211 | 475 | 4.94e-38 | 146 |
MS.gene015247.t1 | AT5G18960 | 40.196 | 102 | 46 | 3 | 7 | 106 | 43 | 131 | 3.02e-13 | 72.0 |
MS.gene015247.t1 | AT5G18960 | 30.464 | 302 | 170 | 7 | 7 | 305 | 211 | 475 | 4.94e-38 | 146 |
MS.gene015247.t1 | AT5G18960 | 40.196 | 102 | 46 | 3 | 7 | 106 | 43 | 131 | 3.02e-13 | 72.0 |
MS.gene015247.t1 | AT3G22170 | 31.429 | 315 | 174 | 10 | 3 | 300 | 66 | 355 | 1.44e-35 | 139 |
MS.gene015247.t1 | AT3G22170 | 31.429 | 315 | 174 | 10 | 3 | 300 | 66 | 355 | 1.44e-35 | 139 |
MS.gene015247.t1 | AT1G52520 | 29.126 | 309 | 192 | 10 | 5 | 305 | 83 | 372 | 1.55e-32 | 130 |
MS.gene015247.t1 | AT1G10240 | 27.796 | 313 | 211 | 7 | 4 | 305 | 45 | 353 | 1.91e-32 | 129 |
MS.gene015247.t1 | AT1G10240 | 27.796 | 313 | 211 | 7 | 4 | 305 | 45 | 353 | 1.91e-32 | 129 |
MS.gene015247.t1 | AT1G80010 | 28.710 | 310 | 205 | 7 | 7 | 306 | 95 | 398 | 2.10e-32 | 129 |
MS.gene015247.t1 | AT2G27110 | 45.455 | 121 | 66 | 0 | 183 | 303 | 55 | 175 | 5.61e-30 | 122 |
MS.gene015247.t1 | AT5G28530 | 25.714 | 315 | 217 | 6 | 6 | 304 | 54 | 367 | 4.56e-29 | 120 |
MS.gene015247.t1 | AT5G28530 | 25.714 | 315 | 217 | 6 | 6 | 304 | 54 | 367 | 4.56e-29 | 120 |
MS.gene015247.t1 | AT5G28530 | 25.714 | 315 | 217 | 6 | 6 | 304 | 54 | 367 | 4.95e-29 | 119 |
MS.gene015247.t1 | AT2G32250 | 28.939 | 311 | 168 | 8 | 10 | 314 | 41 | 304 | 1.10e-27 | 115 |
MS.gene015247.t1 | AT2G32250 | 28.939 | 311 | 168 | 8 | 10 | 314 | 41 | 304 | 1.27e-27 | 115 |
MS.gene015247.t1 | AT2G32250 | 28.939 | 311 | 168 | 8 | 10 | 314 | 41 | 304 | 1.27e-27 | 115 |
MS.gene015247.t1 | AT2G32250 | 28.939 | 311 | 168 | 8 | 10 | 314 | 41 | 304 | 1.41e-27 | 115 |
MS.gene015247.t1 | AT2G32250 | 28.939 | 311 | 168 | 8 | 10 | 314 | 41 | 304 | 1.41e-27 | 115 |
MS.gene015247.t1 | AT2G32250 | 28.939 | 311 | 168 | 8 | 10 | 314 | 41 | 304 | 1.41e-27 | 115 |
MS.gene015247.t1 | AT2G32250 | 28.710 | 310 | 168 | 8 | 11 | 314 | 1 | 263 | 7.80e-27 | 113 |
MS.gene015247.t1 | AT4G19990 | 25.559 | 313 | 181 | 7 | 10 | 306 | 38 | 314 | 8.42e-27 | 113 |
MS.gene015247.t1 | AT4G19990 | 26.115 | 314 | 178 | 7 | 10 | 306 | 24 | 300 | 9.05e-27 | 113 |
MS.gene015247.t1 | AT4G19990 | 26.115 | 314 | 178 | 7 | 10 | 306 | 24 | 300 | 9.05e-27 | 113 |
MS.gene015247.t1 | AT4G19990 | 26.115 | 314 | 178 | 7 | 10 | 306 | 24 | 300 | 9.36e-27 | 113 |
MS.gene015247.t1 | AT4G19990 | 26.115 | 314 | 178 | 7 | 10 | 306 | 24 | 300 | 9.36e-27 | 113 |
MS.gene015247.t1 | AT2G32250 | 28.710 | 310 | 168 | 8 | 11 | 314 | 1 | 263 | 9.49e-27 | 113 |
MS.gene015247.t1 | AT4G19990 | 25.559 | 313 | 181 | 7 | 10 | 306 | 24 | 300 | 1.01e-26 | 113 |
MS.gene015247.t1 | AT4G38170 | 38.710 | 124 | 71 | 2 | 183 | 305 | 21 | 140 | 2.49e-22 | 99.4 |
MS.gene015247.t1 | AT4G19990 | 25.180 | 278 | 155 | 6 | 45 | 306 | 3 | 243 | 1.02e-21 | 97.8 |
MS.gene015247.t1 | AT3G59470 | 42.308 | 104 | 57 | 3 | 5 | 106 | 68 | 170 | 1.09e-16 | 79.7 |
MS.gene015247.t1 | AT3G59470 | 42.308 | 104 | 57 | 3 | 5 | 106 | 68 | 170 | 1.09e-16 | 79.7 |
MS.gene015247.t1 | AT3G59470 | 42.308 | 104 | 57 | 3 | 5 | 106 | 80 | 182 | 1.52e-16 | 79.3 |
MS.gene015247.t1 | AT5G28530 | 22.876 | 306 | 174 | 10 | 6 | 304 | 54 | 304 | 5.93e-15 | 77.0 |
MS.gene015247.t1 | AT5G28530 | 22.876 | 306 | 174 | 10 | 6 | 304 | 54 | 304 | 6.35e-15 | 77.0 |
MS.gene015247.t1 | AT2G43280 | 37.500 | 144 | 83 | 5 | 7 | 145 | 22 | 163 | 9.46e-15 | 73.2 |
MS.gene015247.t1 | AT3G07500 | 38.136 | 118 | 60 | 3 | 7 | 111 | 33 | 150 | 1.47e-14 | 72.8 |
MS.gene015247.t1 | AT4G12850 | 37.405 | 131 | 73 | 5 | 5 | 130 | 9 | 135 | 3.43e-13 | 68.2 |
MS.gene015247.t1 | AT4G12850 | 39.623 | 106 | 59 | 3 | 5 | 108 | 9 | 111 | 5.85e-13 | 66.2 |
MS.gene015247.t1 | AT4G12850 | 40.566 | 106 | 58 | 3 | 5 | 108 | 9 | 111 | 7.99e-13 | 65.9 |
MS.gene015247.t1 | AT2G43280 | 37.209 | 129 | 74 | 5 | 22 | 145 | 2 | 128 | 4.97e-12 | 64.3 |
Find 94 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTTAGACTATGGTTATTT+TGG | 0.110064 | 5.4:+9276203 | MS.gene015247:CDS |
TAGATGAAGCTTGGGAATTT+TGG | 0.196222 | 5.4:+9275592 | MS.gene015247:CDS |
CTTGGTTATGGAAAAGAAAT+TGG | 0.196698 | 5.4:+9275615 | MS.gene015247:CDS |
AACTAGTCACAAACGTGTTT+TGG | 0.242994 | 5.4:+9276165 | MS.gene015247:CDS |
TATGGAAAAGAAATTGGTTT+TGG | 0.264632 | 5.4:+9275621 | MS.gene015247:CDS |
GCTAACATGTGTGTTGTTTC+AGG | 0.285057 | 5.4:-9275870 | None:intergenic |
CCAACAATCGTTTCACTTGA+TGG | 0.300772 | 5.4:-9277501 | None:intergenic |
TTCAGGCTTCAACCACTATA+GGG | 0.303664 | 5.4:+9276289 | MS.gene015247:CDS |
TTTCAGGCTTCAACCACTAT+AGG | 0.325546 | 5.4:+9276288 | MS.gene015247:CDS |
TGCTTCGTTGTCTTCTTGCT+TGG | 0.341298 | 5.4:-9276046 | None:intergenic |
AGCATGAAGTATGGAGAAAT+TGG | 0.343407 | 5.4:+9276065 | MS.gene015247:CDS |
TATCAGATTGTTCACTGTTC+CGG | 0.351765 | 5.4:-9277574 | None:intergenic |
CACTGTTCCGGCGATGGGCT+TGG | 0.358214 | 5.4:-9277562 | None:intergenic |
AGACAACGAAGCATGAAGTA+TGG | 0.376206 | 5.4:+9276056 | MS.gene015247:CDS |
TCTTCTTGCTTCCACTTCTC+AGG | 0.381217 | 5.4:-9277720 | None:intergenic |
TTGTTTCAGGAAGTTGTAAA+AGG | 0.382264 | 5.4:-9275857 | None:intergenic |
CCATTTCAATCTCATGTGCT+TGG | 0.392930 | 5.4:-9275917 | None:intergenic |
TTGAGATAGTTCGATAGTTC+CGG | 0.400237 | 5.4:-9277473 | None:intergenic |
GTCATCGACCACCAGATAAA+AGG | 0.400501 | 5.4:+9275718 | MS.gene015247:CDS |
CTAGTGCTTTAGCCATTGAT+TGG | 0.402321 | 5.4:-9276436 | None:intergenic |
CGACAACCGCTCCGCTGTGA+TGG | 0.412421 | 5.4:-9277601 | None:intergenic |
AGGCAGGTTTGTTTGTAGTA+AGG | 0.424346 | 5.4:+9275692 | MS.gene015247:CDS |
ATTGTTCACTGTTCCGGCGA+TGG | 0.426127 | 5.4:-9277568 | None:intergenic |
CAGCTGTTTCATCATACAAA+AGG | 0.430983 | 5.4:-9276334 | None:intergenic |
GGAGCGGTTGTCGGCGGAGG+TGG | 0.431647 | 5.4:+9277611 | MS.gene015247:CDS |
CAACAATCGTTTCACTTGAT+GGG | 0.446475 | 5.4:-9277500 | None:intergenic |
GCTGGAGGAAGAACTAATCT+TGG | 0.447252 | 5.4:+9275993 | MS.gene015247:CDS |
TTGTTCACTGTTCCGGCGAT+GGG | 0.451711 | 5.4:-9277567 | None:intergenic |
TAATACACCCACTGTTGGTA+TGG | 0.451893 | 5.4:+9275557 | MS.gene015247:CDS |
TTGACAGTGTAGATGAAGCT+TGG | 0.458332 | 5.4:+9275583 | MS.gene015247:CDS |
AGCGGAGCGGTTGTCGGCGG+AGG | 0.458425 | 5.4:+9277608 | MS.gene015247:CDS |
TGATATGCATGGTAAAATGA+AGG | 0.468657 | 5.4:-9276128 | None:intergenic |
TGACAGTGTAGATGAAGCTT+GGG | 0.472271 | 5.4:+9275584 | MS.gene015247:CDS |
GAGAAGTGGAAGCAAGAAGA+AGG | 0.474343 | 5.4:+9277723 | MS.gene015247:CDS |
TTCGTTGTCTTCTTGCTTGG+AGG | 0.474723 | 5.4:-9276043 | None:intergenic |
CCAGTTCTTGTGTCAGACCT+AGG | 0.485373 | 5.4:-9275759 | None:intergenic |
GACAACCGCTCCGCTGTGAT+GGG | 0.488085 | 5.4:-9277600 | None:intergenic |
TGACACCTAGTAGTCTTCCT+TGG | 0.490008 | 5.4:-9277689 | None:intergenic |
ATTGCACTTAGTGTAAAGAA+TGG | 0.494771 | 5.4:+9275795 | MS.gene015247:CDS |
CCAAGCACATGAGATTGAAA+TGG | 0.497661 | 5.4:+9275917 | MS.gene015247:CDS |
CCATCAAGTGAAACGATTGT+TGG | 0.500274 | 5.4:+9277501 | MS.gene015247:CDS |
CATCACAGCGGAGCGGTTGT+CGG | 0.502343 | 5.4:+9277602 | MS.gene015247:CDS |
TTGCACTTAGTGTAAAGAAT+GGG | 0.512175 | 5.4:+9275796 | MS.gene015247:CDS |
CAGGTTTGTTTGTAGTAAGG+AGG | 0.514119 | 5.4:+9275695 | MS.gene015247:CDS |
AAATGACTGTGCCCCTATAG+TGG | 0.515233 | 5.4:-9276301 | None:intergenic |
CCTAGGTCTGACACAAGAAC+TGG | 0.515501 | 5.4:+9275759 | MS.gene015247:CDS |
CAAGTGAAACGATTGTTGGC+GGG | 0.516345 | 5.4:+9277505 | MS.gene015247:CDS |
CAATGGTCGATTAGCACGAT+TGG | 0.519196 | 5.4:-9276258 | None:intergenic |
TCTTCCTTGGTGAACATGAA+TGG | 0.520350 | 5.4:-9277676 | None:intergenic |
GTTCACCAAGGAAGACTACT+AGG | 0.521223 | 5.4:+9277684 | MS.gene015247:CDS |
TGATCAGTGAACAAAGTTCG+TGG | 0.522394 | 5.4:-9276410 | None:intergenic |
CATATTCAGTTAAGAACCCT+AGG | 0.523840 | 5.4:+9275742 | MS.gene015247:CDS |
CGCAATCCATTTGATATGCA+TGG | 0.526801 | 5.4:-9276139 | None:intergenic |
TTTCAGGAAGTTGTAAAAGG+TGG | 0.528337 | 5.4:-9275854 | None:intergenic |
TGGAGAAATTGGTTGTCTCA+TGG | 0.536840 | 5.4:+9276076 | MS.gene015247:CDS |
ATTGAAATGGCAGAAGACTC+CGG | 0.539084 | 5.4:+9275930 | MS.gene015247:CDS |
CAGTTCTTGTGTCAGACCTA+GGG | 0.540746 | 5.4:-9275758 | None:intergenic |
AAACAGCTGAGTCATTCAAA+TGG | 0.542404 | 5.4:+9276348 | MS.gene015247:CDS |
TAACCTTCCAAAGCCATCGC+CGG | 0.542483 | 5.4:+9277454 | MS.gene015247:intron |
AAAGACGGCTCAATTAGATC+AGG | 0.545158 | 5.4:+9275672 | MS.gene015247:CDS |
ATCAATAATACACCCACTGT+TGG | 0.547755 | 5.4:+9275552 | MS.gene015247:CDS |
TAGTTCGATAGTTCCGGCGA+TGG | 0.548888 | 5.4:-9277467 | None:intergenic |
CAATCGTGCTAATCGACCAT+TGG | 0.551184 | 5.4:+9276259 | MS.gene015247:CDS |
CATTCTTCCAAGCCCATCGC+CGG | 0.552819 | 5.4:+9277555 | MS.gene015247:CDS |
GTCAAATTCCATACCAACAG+TGG | 0.555022 | 5.4:-9275565 | None:intergenic |
AGCTGTTTCATCATACAAAA+GGG | 0.555972 | 5.4:-9276333 | None:intergenic |
CAGCTTATGAGTGCACATGC+TGG | 0.559542 | 5.4:+9275975 | MS.gene015247:CDS |
GTGGATCGTATTGCATCTGC+CGG | 0.562283 | 5.4:+9277630 | MS.gene015247:CDS |
AGGTTTGTTTGTAGTAAGGA+GGG | 0.563063 | 5.4:+9275696 | MS.gene015247:CDS |
TAATCTTGGATATACACCAT+TGG | 0.563353 | 5.4:+9276007 | MS.gene015247:CDS |
GAGAAAATCTGCAAAAGTGA+GGG | 0.565158 | 5.4:+9277746 | MS.gene015247:CDS |
TCAAGTGAAACGATTGTTGG+CGG | 0.574990 | 5.4:+9277504 | MS.gene015247:CDS |
TCAGGCTTCAACCACTATAG+GGG | 0.576261 | 5.4:+9276290 | MS.gene015247:CDS |
CACTGATCAAGACCAATCAA+TGG | 0.582222 | 5.4:+9276424 | MS.gene015247:CDS |
ACGGCTCAATTAGATCAGGC+AGG | 0.583390 | 5.4:+9275676 | MS.gene015247:CDS |
CACAGCGGAGCGGTTGTCGG+CGG | 0.585743 | 5.4:+9277605 | MS.gene015247:CDS |
ATGGGCTTGGAAGAATGAGT+TGG | 0.585784 | 5.4:-9277549 | None:intergenic |
AGAAGTGGAAGCAAGAAGAA+GGG | 0.587364 | 5.4:+9277724 | MS.gene015247:CDS |
TCAAGGAGGTACCTGAGAAG+TGG | 0.589534 | 5.4:+9277709 | MS.gene015247:CDS |
AAGTGAAACGATTGTTGGCG+GGG | 0.603990 | 5.4:+9277506 | MS.gene015247:CDS |
AGGTAGTTTCTAGCATCCAA+TGG | 0.607272 | 5.4:-9276023 | None:intergenic |
AGGAAGACTACTAGGTGTCA+AGG | 0.610167 | 5.4:+9277692 | MS.gene015247:CDS |
AAGCCTGAAAACAATGCCAA+TGG | 0.613717 | 5.4:-9276275 | None:intergenic |
AGTGAAACGATTGTTGGCGG+GGG | 0.615902 | 5.4:+9277507 | MS.gene015247:CDS |
GGAGAAAATCTGCAAAAGTG+AGG | 0.628119 | 5.4:+9277745 | MS.gene015247:CDS |
CTTATGAGTGCACATGCTGG+AGG | 0.644813 | 5.4:+9275978 | MS.gene015247:CDS |
TACTTTAACAGAAAGAAAGA+CGG | 0.652471 | 5.4:+9275657 | MS.gene015247:CDS |
TCAAATTCCATACCAACAGT+GGG | 0.666580 | 5.4:-9275564 | None:intergenic |
TTTGTGATCACAGAGTTCAG+AGG | 0.674124 | 5.4:+9275822 | MS.gene015247:CDS |
AGAAAATCTGCAAAAGTGAG+GGG | 0.680306 | 5.4:+9277747 | MS.gene015247:CDS |
TTGACCATTCATGTTCACCA+AGG | 0.681212 | 5.4:+9277672 | MS.gene015247:CDS |
TACAACCCATCACAGCGGAG+CGG | 0.729733 | 5.4:+9277595 | MS.gene015247:CDS |
AAGACTACTAGGTGTCAAGG+AGG | 0.750801 | 5.4:+9277695 | MS.gene015247:CDS |
TCTGATACAACCCATCACAG+CGG | 0.802217 | 5.4:+9277590 | MS.gene015247:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGTTCACTATTTTAAAA+CGG | - | chr5.4:9276968-9276987 | None:intergenic | 15.0% |
!! | AATTTATACATTGTTGTAAC+GGG | + | chr5.4:9277426-9277445 | MS.gene015247:intron | 20.0% |
!! | CAATTTATACATTGTTGTAA+CGG | + | chr5.4:9277425-9277444 | MS.gene015247:intron | 20.0% |
!! | GTTCAGTTTCATATAATATT+TGG | - | chr5.4:9276829-9276848 | None:intergenic | 20.0% |
!! | TAATTGGAAGGTTAATAAAT+TGG | - | chr5.4:9277384-9277403 | None:intergenic | 20.0% |
!!! | TTTAGGACTTTTTTAAACAT+AGG | - | chr5.4:9277182-9277201 | None:intergenic | 20.0% |
! | AACATAGGCATTTGTAAATT+TGG | - | chr5.4:9277167-9277186 | None:intergenic | 25.0% |
! | AATAAATTGGAATGGTACTT+AGG | - | chr5.4:9277371-9277390 | None:intergenic | 25.0% |
! | AATTCATGAGATATCTATCA+TGG | - | chr5.4:9277274-9277293 | None:intergenic | 25.0% |
! | ACTTAGGCGATTAAAATAAT+TGG | - | chr5.4:9277355-9277374 | None:intergenic | 25.0% |
! | ATGATCATAAGCTTATGTAT+CGG | - | chr5.4:9276788-9276807 | None:intergenic | 25.0% |
! | CAACAATGTATAAATTGGAA+TGG | - | chr5.4:9277422-9277441 | None:intergenic | 25.0% |
! | CGTTACAACAATGTATAAAT+TGG | - | chr5.4:9277427-9277446 | None:intergenic | 25.0% |
! | TACTTTAACAGAAAGAAAGA+CGG | + | chr5.4:9275657-9275676 | MS.gene015247:CDS | 25.0% |
! | TGTATTGAATTGACATGAAT+TGG | - | chr5.4:9277327-9277346 | None:intergenic | 25.0% |
!! | ATCTTAGACTATGGTTATTT+TGG | + | chr5.4:9276203-9276222 | MS.gene015247:CDS | 25.0% |
!! | ATTTTACCATGCATATCAAA+TGG | + | chr5.4:9276133-9276152 | MS.gene015247:CDS | 25.0% |
!! | GTATTTTCAAACTCAATCAT+TGG | + | chr5.4:9276100-9276119 | MS.gene015247:CDS | 25.0% |
!!! | TATGGAAAAGAAATTGGTTT+TGG | + | chr5.4:9275621-9275640 | MS.gene015247:CDS | 25.0% |
!!! | TTCATCAAGTTTTATAACTC+CGG | - | chr5.4:9277652-9277671 | None:intergenic | 25.0% |
ATTGCACTTAGTGTAAAGAA+TGG | + | chr5.4:9275795-9275814 | MS.gene015247:CDS | 30.0% | |
CCTGACAATATTACAAGTTA+AGG | + | chr5.4:9276878-9276897 | MS.gene015247:intron | 30.0% | |
CTTGGTTATGGAAAAGAAAT+TGG | + | chr5.4:9275615-9275634 | MS.gene015247:CDS | 30.0% | |
GAAATCAATGTATGCTATCA+AGG | + | chr5.4:9276666-9276685 | MS.gene015247:intron | 30.0% | |
GATAGATATCTCATGAATTG+TGG | + | chr5.4:9277275-9277294 | MS.gene015247:intron | 30.0% | |
GCAAAAATGATCTTAGACTA+TGG | + | chr5.4:9276194-9276213 | MS.gene015247:CDS | 30.0% | |
GGAAGGTTAATAAATTGGAA+TGG | - | chr5.4:9277379-9277398 | None:intergenic | 30.0% | |
GTAAGCTTATGTATGTATGT+GGG | - | chr5.4:9276859-9276878 | None:intergenic | 30.0% | |
GTATGCTATCAAGGAAAAAT+GGG | + | chr5.4:9276675-9276694 | MS.gene015247:intron | 30.0% | |
TAATCTTGGATATACACCAT+TGG | + | chr5.4:9276007-9276026 | MS.gene015247:CDS | 30.0% | |
TATAAATTGGAATGGTACTC+AGG | - | chr5.4:9277414-9277433 | None:intergenic | 30.0% | |
TGATATGCATGGTAAAATGA+AGG | - | chr5.4:9276131-9276150 | None:intergenic | 30.0% | |
TGTATGCTATCAAGGAAAAA+TGG | + | chr5.4:9276674-9276693 | MS.gene015247:intron | 30.0% | |
TTAATAATAGCGTTTCGTCA+CGG | - | chr5.4:9277025-9277044 | None:intergenic | 30.0% | |
TTGCACTTAGTGTAAAGAAT+GGG | + | chr5.4:9275796-9275815 | MS.gene015247:CDS | 30.0% | |
TTGTTTCAGGAAGTTGTAAA+AGG | - | chr5.4:9275860-9275879 | None:intergenic | 30.0% | |
! | AAAACTTTTCTTGAAGCACA+TGG | + | chr5.4:9276377-9276396 | MS.gene015247:CDS | 30.0% |
! | ACTGAATATGACCTTTTATC+TGG | - | chr5.4:9275732-9275751 | None:intergenic | 30.0% |
! | AGCTGTTTCATCATACAAAA+GGG | - | chr5.4:9276336-9276355 | None:intergenic | 30.0% |
! | CTAAGCATTGTATCTAGTTT+AGG | - | chr5.4:9277199-9277218 | None:intergenic | 30.0% |
! | CTTGGACTTCAGATATTTTA+CGG | - | chr5.4:9275902-9275921 | None:intergenic | 30.0% |
! | TGAAGATTTTTGCATCAAAC+CGG | - | chr5.4:9275952-9275971 | None:intergenic | 30.0% |
!! | CCTTAACTTGTAATATTGTC+AGG | - | chr5.4:9276881-9276900 | None:intergenic | 30.0% |
!!! | TCTTTTTATTTTGTCTCAGC+TGG | + | chr5.4:9276715-9276734 | MS.gene015247:intron | 30.0% |
AAAAGGCTAGAATTATGCAG+AGG | - | chr5.4:9277228-9277247 | None:intergenic | 35.0% | |
AAACAGCTGAGTCATTCAAA+TGG | + | chr5.4:9276348-9276367 | MS.gene015247:CDS | 35.0% | |
AAAGTTCTTTGACGCGAAAA+CGG | + | chr5.4:9276910-9276929 | MS.gene015247:intron | 35.0% | |
AAGCAATGTTTGAAGAAGCT+TGG | + | chr5.4:9276599-9276618 | MS.gene015247:intron | 35.0% | |
AGAAAATCTGCAAAAGTGAG+GGG | + | chr5.4:9277747-9277766 | MS.gene015247:CDS | 35.0% | |
AGCATGAAGTATGGAGAAAT+TGG | + | chr5.4:9276065-9276084 | MS.gene015247:CDS | 35.0% | |
ATCAATAATACACCCACTGT+TGG | + | chr5.4:9275552-9275571 | MS.gene015247:CDS | 35.0% | |
CAACAATCGTTTCACTTGAT+GGG | - | chr5.4:9277503-9277522 | None:intergenic | 35.0% | |
CAGAATGGGATTAAACATCT+TGG | + | chr5.4:9276508-9276527 | MS.gene015247:intron | 35.0% | |
CATATTCAGTTAAGAACCCT+AGG | + | chr5.4:9275742-9275761 | MS.gene015247:CDS | 35.0% | |
CTGTAATGCATATGGACAAA+AGG | - | chr5.4:9277245-9277264 | None:intergenic | 35.0% | |
GAGAAAATCTGCAAAAGTGA+GGG | + | chr5.4:9277746-9277765 | MS.gene015247:CDS | 35.0% | |
GCAGCTTAACATGAATCAAA+AGG | - | chr5.4:9277075-9277094 | None:intergenic | 35.0% | |
GGTAAGCTTATGTATGTATG+TGG | - | chr5.4:9276860-9276879 | None:intergenic | 35.0% | |
TATCAGATTGTTCACTGTTC+CGG | - | chr5.4:9277577-9277596 | None:intergenic | 35.0% | |
TCAAATTCCATACCAACAGT+GGG | - | chr5.4:9275567-9275586 | None:intergenic | 35.0% | |
TGATGTTCATGACAAGAAGT+GGG | + | chr5.4:9276642-9276661 | MS.gene015247:intron | 35.0% | |
TTGAGATAGTTCGATAGTTC+CGG | - | chr5.4:9277476-9277495 | None:intergenic | 35.0% | |
TTGATGTTCATGACAAGAAG+TGG | + | chr5.4:9276641-9276660 | MS.gene015247:intron | 35.0% | |
TTTCAGGAAGTTGTAAAAGG+TGG | - | chr5.4:9275857-9275876 | None:intergenic | 35.0% | |
TTTGTACAGTTGCGACAAAA+AGG | + | chr5.4:9276750-9276769 | MS.gene015247:intron | 35.0% | |
! | AACTAGTCACAAACGTGTTT+TGG | + | chr5.4:9276165-9276184 | MS.gene015247:CDS | 35.0% |
! | ACTAGTCACAAACGTGTTTT+GGG | + | chr5.4:9276166-9276185 | MS.gene015247:CDS | 35.0% |
! | AGGTTTGTTTGTAGTAAGGA+GGG | + | chr5.4:9275696-9275715 | MS.gene015247:CDS | 35.0% |
! | CAGCTGTTTCATCATACAAA+AGG | - | chr5.4:9276337-9276356 | None:intergenic | 35.0% |
! | GAATATGACCTTTTATCTGG+TGG | - | chr5.4:9275729-9275748 | None:intergenic | 35.0% |
! | TAGATGAAGCTTGGGAATTT+TGG | + | chr5.4:9275592-9275611 | MS.gene015247:CDS | 35.0% |
! | TTTTGGTGAGGTAGTTTCTT+TGG | + | chr5.4:9276220-9276239 | MS.gene015247:CDS | 35.0% |
!!! | AGACTATGGTTATTTTGGTG+AGG | + | chr5.4:9276208-9276227 | MS.gene015247:CDS | 35.0% |
AAAGACGGCTCAATTAGATC+AGG | + | chr5.4:9275672-9275691 | MS.gene015247:CDS | 40.0% | |
AAGCCTGAAAACAATGCCAA+TGG | - | chr5.4:9276278-9276297 | None:intergenic | 40.0% | |
AAGTTCTTTGACGCGAAAAC+GGG | + | chr5.4:9276911-9276930 | MS.gene015247:intron | 40.0% | |
ACATGGCACTTAATGCAGAA+TGG | + | chr5.4:9276493-9276512 | MS.gene015247:intron | 40.0% | |
AGAAGTGGAAGCAAGAAGAA+GGG | + | chr5.4:9277724-9277743 | MS.gene015247:CDS | 40.0% | |
AGACAACGAAGCATGAAGTA+TGG | + | chr5.4:9276056-9276075 | MS.gene015247:CDS | 40.0% | |
ATTGAAATGGCAGAAGACTC+CGG | + | chr5.4:9275930-9275949 | MS.gene015247:CDS | 40.0% | |
CACTGATCAAGACCAATCAA+TGG | + | chr5.4:9276424-9276443 | MS.gene015247:CDS | 40.0% | |
CATGGCACTTAATGCAGAAT+GGG | + | chr5.4:9276494-9276513 | MS.gene015247:intron | 40.0% | |
CCAACAATCGTTTCACTTGA+TGG | - | chr5.4:9277504-9277523 | None:intergenic | 40.0% | |
CCAAGCACATGAGATTGAAA+TGG | + | chr5.4:9275917-9275936 | MS.gene015247:CDS | 40.0% | |
CCATCAAGTGAAACGATTGT+TGG | + | chr5.4:9277501-9277520 | MS.gene015247:CDS | 40.0% | |
CCATTTCAATCTCATGTGCT+TGG | - | chr5.4:9275920-9275939 | None:intergenic | 40.0% | |
CGCAATCCATTTGATATGCA+TGG | - | chr5.4:9276142-9276161 | None:intergenic | 40.0% | |
CTAGTGCTTTAGCCATTGAT+TGG | - | chr5.4:9276439-9276458 | None:intergenic | 40.0% | |
GGAGAAAATCTGCAAAAGTG+AGG | + | chr5.4:9277745-9277764 | MS.gene015247:CDS | 40.0% | |
GGCATAATGATGTTCTGTCA+TGG | - | chr5.4:9277004-9277023 | None:intergenic | 40.0% | |
GGCTAATGCTGTAATGCATA+TGG | - | chr5.4:9277253-9277272 | None:intergenic | 40.0% | |
GTACTCAGGCGATGAATAAT+TGG | - | chr5.4:9277400-9277419 | None:intergenic | 40.0% | |
GTCAAATTCCATACCAACAG+TGG | - | chr5.4:9275568-9275587 | None:intergenic | 40.0% | |
TAATACACCCACTGTTGGTA+TGG | + | chr5.4:9275557-9275576 | MS.gene015247:CDS | 40.0% | |
TCAAGTGAAACGATTGTTGG+CGG | + | chr5.4:9277504-9277523 | MS.gene015247:CDS | 40.0% | |
TCAGGCGATGAATAATTGGA+AGG | - | chr5.4:9277396-9277415 | None:intergenic | 40.0% | |
TCTTCCTTGGTGAACATGAA+TGG | - | chr5.4:9277679-9277698 | None:intergenic | 40.0% | |
TGACAGTGTAGATGAAGCTT+GGG | + | chr5.4:9275584-9275603 | MS.gene015247:CDS | 40.0% | |
TGATCAGTGAACAAAGTTCG+TGG | - | chr5.4:9276413-9276432 | None:intergenic | 40.0% | |
TGGAGAAATTGGTTGTCTCA+TGG | + | chr5.4:9276076-9276095 | MS.gene015247:CDS | 40.0% | |
TTCAGGCTTCAACCACTATA+GGG | + | chr5.4:9276289-9276308 | MS.gene015247:CDS | 40.0% | |
TTGACAGTGTAGATGAAGCT+TGG | + | chr5.4:9275583-9275602 | MS.gene015247:CDS | 40.0% | |
TTGACCATTCATGTTCACCA+AGG | + | chr5.4:9277672-9277691 | MS.gene015247:CDS | 40.0% | |
TTTCAGGCTTCAACCACTAT+AGG | + | chr5.4:9276288-9276307 | MS.gene015247:CDS | 40.0% | |
TTTGTGATCACAGAGTTCAG+AGG | + | chr5.4:9275822-9275841 | MS.gene015247:CDS | 40.0% | |
! | AGGCAGGTTTGTTTGTAGTA+AGG | + | chr5.4:9275692-9275711 | MS.gene015247:CDS | 40.0% |
! | CAGGTTTGTTTGTAGTAAGG+AGG | + | chr5.4:9275695-9275714 | MS.gene015247:CDS | 40.0% |
! | CAGTTGCGACAAAAAGGTAT+AGG | + | chr5.4:9276756-9276775 | MS.gene015247:intron | 40.0% |
!! | AGGTAGTTTCTAGCATCCAA+TGG | - | chr5.4:9276026-9276045 | None:intergenic | 40.0% |
!! | GCTAACATGTGTGTTGTTTC+AGG | - | chr5.4:9275873-9275892 | None:intergenic | 40.0% |
!! | TATAGGGGCACAGTCATTTT+TGG | + | chr5.4:9276305-9276324 | MS.gene015247:CDS | 40.0% |
!!! | TGGGAATTTTGGCTTGGTTA+TGG | + | chr5.4:9275603-9275622 | MS.gene015247:CDS | 40.0% |
AAATGACTGTGCCCCTATAG+TGG | - | chr5.4:9276304-9276323 | None:intergenic | 45.0% | |
AAGACTACTAGGTGTCAAGG+AGG | + | chr5.4:9277695-9277714 | MS.gene015247:CDS | 45.0% | |
AAGTGAAACGATTGTTGGCG+GGG | + | chr5.4:9277506-9277525 | MS.gene015247:CDS | 45.0% | |
AGGAAGACTACTAGGTGTCA+AGG | + | chr5.4:9277692-9277711 | MS.gene015247:CDS | 45.0% | |
ATGGGCTTGGAAGAATGAGT+TGG | - | chr5.4:9277552-9277571 | None:intergenic | 45.0% | |
CAAGTGAAACGATTGTTGGC+GGG | + | chr5.4:9277505-9277524 | MS.gene015247:CDS | 45.0% | |
CAATCGTGCTAATCGACCAT+TGG | + | chr5.4:9276259-9276278 | MS.gene015247:CDS | 45.0% | |
CAATGGTCGATTAGCACGAT+TGG | - | chr5.4:9276261-9276280 | None:intergenic | 45.0% | |
CAGTTCTTGTGTCAGACCTA+GGG | - | chr5.4:9275761-9275780 | None:intergenic | 45.0% | |
GAATTGGAACTCACCTCCAT+GGG | - | chr5.4:9277311-9277330 | None:intergenic | 45.0% | |
GAGAAGTGGAAGCAAGAAGA+AGG | + | chr5.4:9277723-9277742 | MS.gene015247:CDS | 45.0% | |
GCAAAGCATGTACGCAACAA+AGG | + | chr5.4:9277119-9277138 | MS.gene015247:intron | 45.0% | |
GCTGGAGGAAGAACTAATCT+TGG | + | chr5.4:9275993-9276012 | MS.gene015247:CDS | 45.0% | |
GGCTAGAATTATGCAGAGGT+TGG | - | chr5.4:9277224-9277243 | None:intergenic | 45.0% | |
GTCATCGACCACCAGATAAA+AGG | + | chr5.4:9275718-9275737 | MS.gene015247:CDS | 45.0% | |
GTTCACCAAGGAAGACTACT+AGG | + | chr5.4:9277684-9277703 | MS.gene015247:CDS | 45.0% | |
TCACCTCCATGGGAATGAAT+TGG | - | chr5.4:9277301-9277320 | None:intergenic | 45.0% | |
TCAGGCTTCAACCACTATAG+GGG | + | chr5.4:9276290-9276309 | MS.gene015247:CDS | 45.0% | |
TCTGATACAACCCATCACAG+CGG | + | chr5.4:9277590-9277609 | MS.gene015247:CDS | 45.0% | |
TCTTCTTGCTTCCACTTCTC+AGG | - | chr5.4:9277723-9277742 | None:intergenic | 45.0% | |
TGAATTGGAACTCACCTCCA+TGG | - | chr5.4:9277312-9277331 | None:intergenic | 45.0% | |
TGACACCTAGTAGTCTTCCT+TGG | - | chr5.4:9277692-9277711 | None:intergenic | 45.0% | |
TGCTTCGTTGTCTTCTTGCT+TGG | - | chr5.4:9276049-9276068 | None:intergenic | 45.0% | |
TGTCGCAACTGTACAAAGCA+AGG | - | chr5.4:9276747-9276766 | None:intergenic | 45.0% | |
TTCGTTGTCTTCTTGCTTGG+AGG | - | chr5.4:9276046-9276065 | None:intergenic | 45.0% | |
TTGTGGCCAATTCATTCCCA+TGG | + | chr5.4:9277292-9277311 | MS.gene015247:intron | 45.0% | |
! | CGACCATTGGCATTGTTTTC+AGG | + | chr5.4:9276272-9276291 | MS.gene015247:CDS | 45.0% |
! | GCTGCTTTATTAAGCGTTCC+TGG | - | chr5.4:9277145-9277164 | None:intergenic | 45.0% |
!!! | GAAGCTTGGGAATTTTGGCT+TGG | + | chr5.4:9275597-9275616 | MS.gene015247:CDS | 45.0% |
ACGGCTCAATTAGATCAGGC+AGG | + | chr5.4:9275676-9275695 | MS.gene015247:CDS | 50.0% | |
AGTGAAACGATTGTTGGCGG+GGG | + | chr5.4:9277507-9277526 | MS.gene015247:CDS | 50.0% | |
ATTGTTCACTGTTCCGGCGA+TGG | - | chr5.4:9277571-9277590 | None:intergenic | 50.0% | |
CAGCTTATGAGTGCACATGC+TGG | + | chr5.4:9275975-9275994 | MS.gene015247:CDS | 50.0% | |
CATAACCCATGTCGGGTATC+TGG | - | chr5.4:9276472-9276491 | None:intergenic | 50.0% | |
CCAGTTCTTGTGTCAGACCT+AGG | - | chr5.4:9275762-9275781 | None:intergenic | 50.0% | |
CCATGTGCATAACCCATGTC+GGG | - | chr5.4:9276479-9276498 | None:intergenic | 50.0% | |
CCTAGGTCTGACACAAGAAC+TGG | + | chr5.4:9275759-9275778 | MS.gene015247:CDS | 50.0% | |
CGAAAACGGGTGCGACAAAA+AGG | + | chr5.4:9276924-9276943 | MS.gene015247:intron | 50.0% | |
CTTATGAGTGCACATGCTGG+AGG | + | chr5.4:9275978-9275997 | MS.gene015247:CDS | 50.0% | |
GCCATGTGCATAACCCATGT+CGG | - | chr5.4:9276480-9276499 | None:intergenic | 50.0% | |
GTGGATCGTATTGCATCTGC+CGG | + | chr5.4:9277630-9277649 | MS.gene015247:CDS | 50.0% | |
TAACCTTCCAAAGCCATCGC+CGG | + | chr5.4:9277454-9277473 | MS.gene015247:intron | 50.0% | |
TAGTTCGATAGTTCCGGCGA+TGG | - | chr5.4:9277470-9277489 | None:intergenic | 50.0% | |
TGATGCCAGATACCCGACAT+GGG | + | chr5.4:9276464-9276483 | MS.gene015247:intron | 50.0% | |
TGGCCAATTCATTCCCATGG+AGG | + | chr5.4:9277295-9277314 | MS.gene015247:intron | 50.0% | |
TTGTTCACTGTTCCGGCGAT+GGG | - | chr5.4:9277570-9277589 | None:intergenic | 50.0% | |
!! | TCAAGGAGGTACCTGAGAAG+TGG | + | chr5.4:9277709-9277728 | MS.gene015247:CDS | 50.0% |
CATTCTTCCAAGCCCATCGC+CGG | + | chr5.4:9277555-9277574 | MS.gene015247:CDS | 55.0% | |
GATAGTTCCGGCGATGGCTT+TGG | - | chr5.4:9277464-9277483 | None:intergenic | 55.0% | |
GCATGTACGCAACAAAGGCC+AGG | + | chr5.4:9277124-9277143 | MS.gene015247:intron | 55.0% | |
GTGATGCCAGATACCCGACA+TGG | + | chr5.4:9276463-9276482 | MS.gene015247:intron | 55.0% | |
TACAACCCATCACAGCGGAG+CGG | + | chr5.4:9277595-9277614 | MS.gene015247:CDS | 55.0% | |
! | CCCGACATGGGTTATGCACA+TGG | + | chr5.4:9276476-9276495 | MS.gene015247:intron | 55.0% |
CATCACAGCGGAGCGGTTGT+CGG | + | chr5.4:9277602-9277621 | MS.gene015247:CDS | 60.0% | |
GACAACCGCTCCGCTGTGAT+GGG | - | chr5.4:9277603-9277622 | None:intergenic | 60.0% | |
!! | GTTCCGGCGATGGCTTTGGA+AGG | - | chr5.4:9277460-9277479 | None:intergenic | 60.0% |
CGACAACCGCTCCGCTGTGA+TGG | - | chr5.4:9277604-9277623 | None:intergenic | 65.0% | |
! | CACTGTTCCGGCGATGGGCT+TGG | - | chr5.4:9277565-9277584 | None:intergenic | 65.0% |
CACAGCGGAGCGGTTGTCGG+CGG | + | chr5.4:9277605-9277624 | MS.gene015247:CDS | 70.0% | |
AGCGGAGCGGTTGTCGGCGG+AGG | + | chr5.4:9277608-9277627 | MS.gene015247:CDS | 75.0% | |
GGAGCGGTTGTCGGCGGAGG+TGG | + | chr5.4:9277611-9277630 | MS.gene015247:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 9275546 | 9277773 | 9275546 | ID=MS.gene015247 |
chr5.4 | mRNA | 9275546 | 9277773 | 9275546 | ID=MS.gene015247.t1;Parent=MS.gene015247 |
chr5.4 | exon | 9275546 | 9276462 | 9275546 | ID=MS.gene015247.t1.exon1;Parent=MS.gene015247.t1 |
chr5.4 | CDS | 9275546 | 9276462 | 9275546 | ID=cds.MS.gene015247.t1;Parent=MS.gene015247.t1 |
chr5.4 | exon | 9277467 | 9277773 | 9277467 | ID=MS.gene015247.t1.exon2;Parent=MS.gene015247.t1 |
chr5.4 | CDS | 9277467 | 9277773 | 9277467 | ID=cds.MS.gene015247.t1;Parent=MS.gene015247.t1 |
Gene Sequence |
Protein sequence |