Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015250.t1 | XP_003611597.2 | 97.6 | 368 | 9 | 0 | 3 | 370 | 8 | 375 | 4.80E-214 | 753.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015250.t1 | Q9FJX5 | 65.0 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 7.5e-139 | 495.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015250.t1 | G7K3T4 | 97.6 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 3.5e-214 | 753.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015250.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015250.t1 | MTR_5g015680 | 97.554 | 368 | 9 | 0 | 3 | 370 | 47 | 414 | 0.0 | 754 |
| MS.gene015250.t1 | MTR_5g015680 | 97.554 | 368 | 9 | 0 | 3 | 370 | 8 | 375 | 0.0 | 753 |
| MS.gene015250.t1 | MTR_5g015680 | 98.214 | 280 | 5 | 0 | 91 | 370 | 1 | 280 | 0.0 | 572 |
| MS.gene015250.t1 | MTR_4g104140 | 44.781 | 297 | 159 | 5 | 63 | 355 | 17 | 312 | 7.33e-83 | 256 |
| MS.gene015250.t1 | MTR_4g104140 | 46.218 | 238 | 123 | 5 | 121 | 355 | 7 | 242 | 5.64e-67 | 213 |
| MS.gene015250.t1 | MTR_3g075270 | 36.923 | 260 | 163 | 1 | 103 | 362 | 7 | 265 | 4.08e-64 | 207 |
| MS.gene015250.t1 | MTR_4g005050 | 34.426 | 122 | 66 | 4 | 243 | 364 | 1598 | 1705 | 4.73e-15 | 77.4 |
| MS.gene015250.t1 | MTR_3g088660 | 29.412 | 153 | 101 | 3 | 76 | 226 | 97 | 244 | 7.21e-13 | 68.2 |
| MS.gene015250.t1 | MTR_5g085310 | 38.356 | 73 | 44 | 1 | 273 | 345 | 953 | 1024 | 1.70e-12 | 69.3 |
| MS.gene015250.t1 | MTR_3g107960 | 39.506 | 81 | 47 | 2 | 274 | 353 | 1119 | 1198 | 5.76e-12 | 67.8 |
| MS.gene015250.t1 | MTR_6g017010 | 38.889 | 72 | 43 | 1 | 274 | 345 | 685 | 755 | 9.01e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015250.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.31e-178 | 498 |
| MS.gene015250.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 20 | 368 | 9.31e-178 | 498 |
| MS.gene015250.t1 | AT5G67480 | 65.000 | 360 | 114 | 2 | 11 | 369 | 31 | 379 | 1.52e-177 | 498 |
| MS.gene015250.t1 | AT4G37610 | 60.976 | 328 | 126 | 2 | 41 | 367 | 34 | 360 | 8.44e-150 | 427 |
| MS.gene015250.t1 | AT1G05690 | 49.861 | 361 | 167 | 4 | 4 | 360 | 1 | 351 | 1.56e-110 | 327 |
| MS.gene015250.t1 | AT3G48360 | 43.789 | 322 | 163 | 8 | 56 | 361 | 28 | 347 | 2.20e-79 | 248 |
| MS.gene015250.t1 | AT5G63160 | 43.770 | 313 | 163 | 7 | 61 | 361 | 24 | 335 | 8.65e-76 | 239 |
| MS.gene015250.t1 | AT3G48360 | 45.862 | 290 | 142 | 6 | 56 | 331 | 28 | 316 | 1.55e-73 | 232 |
| MS.gene015250.t1 | AT5G63160 | 46.099 | 282 | 140 | 6 | 61 | 331 | 24 | 304 | 2.64e-71 | 225 |
| MS.gene015250.t1 | AT5G63160 | 45.020 | 251 | 127 | 7 | 120 | 361 | 2 | 250 | 8.38e-60 | 194 |
| MS.gene015250.t1 | AT3G48360 | 44.033 | 243 | 122 | 7 | 131 | 361 | 1 | 241 | 1.30e-58 | 191 |
| MS.gene015250.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1546 | 1669 | 6.41e-15 | 77.0 |
| MS.gene015250.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.45e-15 | 77.0 |
| MS.gene015250.t1 | AT1G79000 | 29.577 | 142 | 82 | 4 | 223 | 364 | 1570 | 1693 | 6.48e-15 | 77.0 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1550 | 1673 | 9.78e-13 | 70.5 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1553 | 1676 | 9.96e-13 | 70.5 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1514 | 1637 | 1.03e-12 | 70.1 |
| MS.gene015250.t1 | AT1G16710 | 28.873 | 142 | 83 | 4 | 223 | 364 | 1579 | 1702 | 1.07e-12 | 70.1 |
| MS.gene015250.t1 | AT3G12980 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1581 | 1661 | 4.79e-11 | 65.1 |
| MS.gene015250.t1 | AT3G12980 | 36.471 | 85 | 50 | 2 | 276 | 360 | 1500 | 1580 | 4.80e-11 | 65.1 |
Find 74 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAATTAGATGGACAATTT+TGG | 0.186306 | 5.4:+9244124 | MS.gene015250:CDS |
| GGCGATCGATCTCAATCTTT+GGG | 0.258443 | 5.4:+9242754 | MS.gene015250:CDS |
| TGGCGATCGATCTCAATCTT+TGG | 0.276993 | 5.4:+9242753 | MS.gene015250:CDS |
| TTCGATATTTGTATTCTTCC+TGG | 0.281886 | 5.4:+9242805 | MS.gene015250:CDS |
| ATCTTGAAAACAAGAGGAAT+TGG | 0.329795 | 5.4:+9244155 | MS.gene015250:CDS |
| AAGCAATTCAAGCCCTTTGC+AGG | 0.347578 | 5.4:-9243844 | None:intergenic |
| TTGGGATTGCACCATGCTTT+CGG | 0.361459 | 5.4:+9244174 | MS.gene015250:CDS |
| AAAGAACTTCAAAACTGTTT+CGG | 0.374386 | 5.4:+9243465 | MS.gene015250:CDS |
| AGTTCTAGAAAAGGAAATTC+TGG | 0.390373 | 5.4:+9243525 | MS.gene015250:CDS |
| CGCATACTCGCAAGGATAAC+CGG | 0.402463 | 5.4:-9242142 | None:intergenic |
| GCAAGAAAGACGAAATTAGA+TGG | 0.406485 | 5.4:+9244114 | MS.gene015250:CDS |
| AAAGGAACTCTACAGAAATC+TGG | 0.408140 | 5.4:-9243969 | None:intergenic |
| ATGTGAACAGAAGCTAGAAT+TGG | 0.410891 | 5.4:+9243348 | MS.gene015250:CDS |
| AGAGATGGTTGTCGAACTAT+TGG | 0.415706 | 5.4:+9243774 | MS.gene015250:CDS |
| GGTTGCAAGTTGAGAGTCCC+TGG | 0.418562 | 5.4:+9243882 | MS.gene015250:CDS |
| CTAGTTCACATTTGTAGAGA+TGG | 0.440223 | 5.4:+9243759 | MS.gene015250:CDS |
| CGAGGCGAAGGAGGTGGTAT+CGG | 0.446905 | 5.4:-9242108 | None:intergenic |
| TCTGTAGAGTTCCTTTGTGC+AGG | 0.450851 | 5.4:+9243976 | MS.gene015250:CDS |
| TCTTGAAAACAAGAGGAATT+GGG | 0.451569 | 5.4:+9244156 | MS.gene015250:CDS |
| TTCAGCATGCCTCTCAATAC+AGG | 0.459183 | 5.4:-9242708 | None:intergenic |
| TGAGATCGATCGCCACCGAT+TGG | 0.468351 | 5.4:-9242745 | None:intergenic |
| GGAATTTGTCCTACATTTGT+TGG | 0.476702 | 5.4:+9243285 | MS.gene015250:CDS |
| GAGTCACCCAGTTCTAGAAA+AGG | 0.485308 | 5.4:+9243516 | MS.gene015250:CDS |
| GTTTGCATTAATACTGATAA+CGG | 0.495992 | 5.4:+9242264 | MS.gene015250:CDS |
| TGTGAACAGAAGCTAGAATT+GGG | 0.501782 | 5.4:+9243349 | MS.gene015250:CDS |
| ACACAGCTGCTTCGCCCTCT+CGG | 0.509722 | 5.4:-9242183 | None:intergenic |
| TTACGAGAAAGAAGAAATGA+AGG | 0.513436 | 5.4:+9243264 | MS.gene015250:CDS |
| TTCTGCAACAAGAGATCTGT+GGG | 0.515476 | 5.4:+9242209 | MS.gene015250:CDS |
| TCGCCTCGATCAGCAGCAAC+CGG | 0.515743 | 5.4:+9242123 | MS.gene015250:CDS |
| GTTGCAAGTTGAGAGTCCCT+GGG | 0.520761 | 5.4:+9243883 | MS.gene015250:CDS |
| CACATTCACGCTTCAAGTGA+GGG | 0.529306 | 5.4:-9243330 | None:intergenic |
| GTGCTCATTGCAAGAGGATG+TGG | 0.529329 | 5.4:+9243910 | MS.gene015250:CDS |
| ATAAGCTGATGGCTAACATT+CGG | 0.529455 | 5.4:+9242067 | None:intergenic |
| CAAGAGGATGTGGCAACTGT+TGG | 0.537744 | 5.4:+9243920 | MS.gene015250:CDS |
| ATTGATTGATCAGAGTAAGA+AGG | 0.539090 | 5.4:+9243674 | MS.gene015250:intron |
| CTTTGAAGTCTTTATCATGC+GGG | 0.542449 | 5.4:-9243797 | None:intergenic |
| AAAACTGTTTCGGAGTCAGA+AGG | 0.543714 | 5.4:+9243475 | MS.gene015250:CDS |
| GAGAAAGCACCAACAAATGT+AGG | 0.546221 | 5.4:-9243294 | None:intergenic |
| AGCAAGCAAATCGTTCCAAT+CGG | 0.549306 | 5.4:+9242730 | MS.gene015250:CDS |
| GTTGCTGCTGATCGAGGCGA+AGG | 0.550246 | 5.4:-9242120 | None:intergenic |
| TTTGCAATTATACGATGCAA+TGG | 0.552736 | 5.4:+9243731 | MS.gene015250:CDS |
| GTAGGTATACTTCCTGCAAA+GGG | 0.554458 | 5.4:+9243832 | MS.gene015250:CDS |
| GCTGATCGAGGCGAAGGAGG+TGG | 0.554736 | 5.4:-9242114 | None:intergenic |
| ATCAGTATTAATGCAAACAT+CGG | 0.559796 | 5.4:-9242259 | None:intergenic |
| AGGAAGTATACCTACACGGC+TGG | 0.561333 | 5.4:-9243824 | None:intergenic |
| GAAAAGATCTTGAAAACAAG+AGG | 0.566400 | 5.4:+9244149 | MS.gene015250:CDS |
| GCTTTGAAGTCTTTATCATG+CGG | 0.567781 | 5.4:-9243798 | None:intergenic |
| TTCATCGCCGCATACTCGCA+AGG | 0.575928 | 5.4:-9242150 | None:intergenic |
| ATGAATAATTTATCACCGAG+AGG | 0.575964 | 5.4:+9242168 | MS.gene015250:CDS |
| GCTGCTGATCGAGGCGAAGG+AGG | 0.588376 | 5.4:-9242117 | None:intergenic |
| TGTAGGTATACTTCCTGCAA+AGG | 0.593266 | 5.4:+9243831 | MS.gene015250:CDS |
| TTGATCAGAGTAAGAAGGAG+AGG | 0.595421 | 5.4:+9243679 | MS.gene015250:intron |
| TCACATTCACGCTTCAAGTG+AGG | 0.596344 | 5.4:-9243331 | None:intergenic |
| CGGTTATCCTTGCGAGTATG+CGG | 0.602040 | 5.4:+9242143 | MS.gene015250:CDS |
| CTGTTTCGGAGTCAGAAGGA+TGG | 0.605228 | 5.4:+9243479 | MS.gene015250:CDS |
| AAGCAAATCGTTCCAATCGG+TGG | 0.607764 | 5.4:+9242733 | MS.gene015250:CDS |
| TCAAAGCAAACCAGCCGTGT+AGG | 0.611970 | 5.4:+9243814 | MS.gene015250:CDS |
| TGTCATTGTGGCCGAAAGCA+TGG | 0.612906 | 5.4:-9244185 | None:intergenic |
| TAACCGGTTGCTGCTGATCG+AGG | 0.614451 | 5.4:-9242126 | None:intergenic |
| GGGGTTGTGCTCATTGCAAG+AGG | 0.622565 | 5.4:+9243904 | MS.gene015250:CDS |
| AAAACTCGTACTGCATCATG+TGG | 0.623793 | 5.4:-9242780 | None:intergenic |
| GTGGCTTCTCCTGTATTGAG+AGG | 0.626268 | 5.4:+9242699 | MS.gene015250:CDS |
| TACATCAACTAGATTATCCA+CGG | 0.627170 | 5.4:-9243380 | None:intergenic |
| GCGATCGATCTCAATCTTTG+GGG | 0.627705 | 5.4:+9242755 | MS.gene015250:CDS |
| CTTCTGCAACAAGAGATCTG+TGG | 0.636785 | 5.4:+9242208 | MS.gene015250:CDS |
| TGAATAATTTATCACCGAGA+GGG | 0.647099 | 5.4:+9242169 | MS.gene015250:CDS |
| TGCATTAATACTGATAACGG+TGG | 0.661014 | 5.4:+9242267 | MS.gene015250:CDS |
| TTGCAAGTTGAGAGTCCCTG+GGG | 0.661286 | 5.4:+9243884 | MS.gene015250:CDS |
| TAATATTGTTACCTGCACAA+AGG | 0.667930 | 5.4:-9243987 | None:intergenic |
| AGAATTGGGTTTACTCACCG+TGG | 0.691467 | 5.4:+9243363 | MS.gene015250:CDS |
| TTGCAGGAAGTATACCTACA+CGG | 0.699708 | 5.4:-9243828 | None:intergenic |
| TGCAAGTTGAGAGTCCCTGG+GGG | 0.717689 | 5.4:+9243885 | MS.gene015250:CDS |
| CATTACTGTGTGATGCTCCG+CGG | 0.722450 | 5.4:+9243413 | MS.gene015250:CDS |
| TGACAAATGAGACTGAGCCG+CGG | 0.747022 | 5.4:-9243430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACACAATAATAGATAATT+AGG | + | chr5.4:9243626-9243645 | MS.gene015250:intron | 15.0% |
| !!! | AAAAAAAATTGAGTTTTGTT+TGG | + | chr5.4:9243089-9243108 | MS.gene015250:intron | 15.0% |
| !!! | AAAAAAATTGAGTTTTGTTT+GGG | + | chr5.4:9243090-9243109 | MS.gene015250:intron | 15.0% |
| !!! | TAACTTTAAGAAATTTCAAT+CGG | + | chr5.4:9242985-9243004 | MS.gene015250:intron | 15.0% |
| !!! | TATGCAATTAATCTATTTTA+AGG | + | chr5.4:9242480-9242499 | MS.gene015250:intron | 15.0% |
| !! | ATTTCTTAAAGTTATCCTAT+CGG | - | chr5.4:9242979-9242998 | None:intergenic | 20.0% |
| !!! | AAAAAATTGAGTTTTGTTTG+GGG | + | chr5.4:9243091-9243110 | MS.gene015250:intron | 20.0% |
| !!! | ATGATTTTGAGGTTTATAAA+GGG | - | chr5.4:9242841-9242860 | None:intergenic | 20.0% |
| !!! | TATGATTTTGAGGTTTATAA+AGG | - | chr5.4:9242842-9242861 | None:intergenic | 20.0% |
| !!! | TGAAGTTCTTTAGTATTTTA+CGG | - | chr5.4:9243456-9243475 | None:intergenic | 20.0% |
| ! | AAAGAACTTCAAAACTGTTT+CGG | + | chr5.4:9243465-9243484 | MS.gene015250:CDS | 25.0% |
| ! | AACTGTGAAATTGAAACAAA+TGG | + | chr5.4:9243061-9243080 | MS.gene015250:intron | 25.0% |
| ! | ATCAGTATTAATGCAAACAT+CGG | - | chr5.4:9242262-9242281 | None:intergenic | 25.0% |
| ! | ATTCAAAAGTAGTTAGACAA+TGG | - | chr5.4:9243652-9243671 | None:intergenic | 25.0% |
| ! | GTTTGCATTAATACTGATAA+CGG | + | chr5.4:9242264-9242283 | MS.gene015250:CDS | 25.0% |
| ! | TCACTTTATACTATATGATC+AGG | + | chr5.4:9242674-9242693 | MS.gene015250:intron | 25.0% |
| ! | TGATTGAAGAAGAAAATGTA+AGG | + | chr5.4:9243554-9243573 | MS.gene015250:intron | 25.0% |
| ! | TGATTGTATTTATTTCAGCT+CGG | + | chr5.4:9244025-9244044 | MS.gene015250:intron | 25.0% |
| !! | CAAACATTCTTATGATTTTG+AGG | - | chr5.4:9242852-9242871 | None:intergenic | 25.0% |
| !! | GTAACAAATCTTTTCATTTC+AGG | + | chr5.4:9244063-9244082 | MS.gene015250:intron | 25.0% |
| !!! | AAAAATTGAGTTTTGTTTGG+GGG | + | chr5.4:9243092-9243111 | MS.gene015250:intron | 25.0% |
| ATCTTGAAAACAAGAGGAAT+TGG | + | chr5.4:9244155-9244174 | MS.gene015250:CDS | 30.0% | |
| ATGAATAATTTATCACCGAG+AGG | + | chr5.4:9242168-9242187 | MS.gene015250:CDS | 30.0% | |
| ATTGATTGATCAGAGTAAGA+AGG | + | chr5.4:9243674-9243693 | MS.gene015250:intron | 30.0% | |
| CAGAAAAATGAATGAAAGAG+AGG | + | chr5.4:9243704-9243723 | MS.gene015250:CDS | 30.0% | |
| CTTTATACTATATGATCAGG+CGG | + | chr5.4:9242677-9242696 | MS.gene015250:intron | 30.0% | |
| GAAAAGATCTTGAAAACAAG+AGG | + | chr5.4:9244149-9244168 | MS.gene015250:CDS | 30.0% | |
| TAAGAAATTTCAATCGGTAG+TGG | + | chr5.4:9242991-9243010 | MS.gene015250:intron | 30.0% | |
| TAATATTGTTACCTGCACAA+AGG | - | chr5.4:9243990-9244009 | None:intergenic | 30.0% | |
| TACATCAACTAGATTATCCA+CGG | - | chr5.4:9243383-9243402 | None:intergenic | 30.0% | |
| TACTTCGAAATTGATCTACT+CGG | - | chr5.4:9243037-9243056 | None:intergenic | 30.0% | |
| TCTTGAAAACAAGAGGAATT+GGG | + | chr5.4:9244156-9244175 | MS.gene015250:CDS | 30.0% | |
| TCTTTGAACGAATTAGTAGT+AGG | + | chr5.4:9242425-9242444 | MS.gene015250:intron | 30.0% | |
| TGAATAATTTATCACCGAGA+GGG | + | chr5.4:9242169-9242188 | MS.gene015250:CDS | 30.0% | |
| TTACGAGAAAGAAGAAATGA+AGG | + | chr5.4:9243264-9243283 | MS.gene015250:CDS | 30.0% | |
| TTCGATATTTGTATTCTTCC+TGG | + | chr5.4:9242805-9242824 | MS.gene015250:CDS | 30.0% | |
| TTTGCAATTATACGATGCAA+TGG | + | chr5.4:9243731-9243750 | MS.gene015250:CDS | 30.0% | |
| ! | AGTAGGCTCAAAATTTTCAT+AGG | + | chr5.4:9242442-9242461 | MS.gene015250:intron | 30.0% |
| ! | CGAAATTAGATGGACAATTT+TGG | + | chr5.4:9244124-9244143 | MS.gene015250:CDS | 30.0% |
| !! | AGTTCTAGAAAAGGAAATTC+TGG | + | chr5.4:9243525-9243544 | MS.gene015250:CDS | 30.0% |
| !!! | AAAATTGAGTTTTGTTTGGG+GGG | + | chr5.4:9243093-9243112 | MS.gene015250:intron | 30.0% |
| !!! | AGAATTTCCTTTTCTAGAAC+TGG | - | chr5.4:9243526-9243545 | None:intergenic | 30.0% |
| !!! | GAATTTCCTTTTCTAGAACT+GGG | - | chr5.4:9243525-9243544 | None:intergenic | 30.0% |
| AAAGGAACTCTACAGAAATC+TGG | - | chr5.4:9243972-9243991 | None:intergenic | 35.0% | |
| ATAAAGGGAACAAACATACC+AGG | - | chr5.4:9242826-9242845 | None:intergenic | 35.0% | |
| ATGTGAACAGAAGCTAGAAT+TGG | + | chr5.4:9243348-9243367 | MS.gene015250:CDS | 35.0% | |
| CTAGTTCACATTTGTAGAGA+TGG | + | chr5.4:9243759-9243778 | MS.gene015250:CDS | 35.0% | |
| GCAAGAAAGACGAAATTAGA+TGG | + | chr5.4:9244114-9244133 | MS.gene015250:CDS | 35.0% | |
| GGAATTTGTCCTACATTTGT+TGG | + | chr5.4:9243285-9243304 | MS.gene015250:CDS | 35.0% | |
| GTGCCTATTCAAAATCAAGT+GGG | - | chr5.4:9242335-9242354 | None:intergenic | 35.0% | |
| GTTTGTCTCCTTGTACTATA+GGG | + | chr5.4:9242867-9242886 | MS.gene015250:intron | 35.0% | |
| TGTGAACAGAAGCTAGAATT+GGG | + | chr5.4:9243349-9243368 | MS.gene015250:CDS | 35.0% | |
| TGTTTGTCTCCTTGTACTAT+AGG | + | chr5.4:9242866-9242885 | MS.gene015250:intron | 35.0% | |
| TTTGTCTCCTTGTACTATAG+GGG | + | chr5.4:9242868-9242887 | MS.gene015250:intron | 35.0% | |
| ! | CACTTGATTTTGAATAGGCA+CGG | + | chr5.4:9242334-9242353 | MS.gene015250:intron | 35.0% |
| ! | CATCCCACTTGATTTTGAAT+AGG | + | chr5.4:9242329-9242348 | MS.gene015250:intron | 35.0% |
| ! | GTAGGCTTGATAATATTCTC+TGG | + | chr5.4:9242890-9242909 | MS.gene015250:intron | 35.0% |
| !! | CTTTGAAGTCTTTATCATGC+GGG | - | chr5.4:9243800-9243819 | None:intergenic | 35.0% |
| !! | GAAATTTTGATGTACCTAGC+CGG | - | chr5.4:9242366-9242385 | None:intergenic | 35.0% |
| !! | GCTTTGAAGTCTTTATCATG+CGG | - | chr5.4:9243801-9243820 | None:intergenic | 35.0% |
| !! | TGCATTAATACTGATAACGG+TGG | + | chr5.4:9242267-9242286 | MS.gene015250:CDS | 35.0% |
| AAAACTCGTACTGCATCATG+TGG | - | chr5.4:9242783-9242802 | None:intergenic | 40.0% | |
| AAAACTGTTTCGGAGTCAGA+AGG | + | chr5.4:9243475-9243494 | MS.gene015250:CDS | 40.0% | |
| AGAGATGGTTGTCGAACTAT+TGG | + | chr5.4:9243774-9243793 | MS.gene015250:CDS | 40.0% | |
| AGCAAGCAAATCGTTCCAAT+CGG | + | chr5.4:9242730-9242749 | MS.gene015250:CDS | 40.0% | |
| ATTGATCTACTCGGTTTAGC+TGG | - | chr5.4:9243028-9243047 | None:intergenic | 40.0% | |
| CGTGCCTATTCAAAATCAAG+TGG | - | chr5.4:9242336-9242355 | None:intergenic | 40.0% | |
| GAGATCAACATAGCTGATCA+AGG | + | chr5.4:9243124-9243143 | MS.gene015250:intron | 40.0% | |
| GTAGGTATACTTCCTGCAAA+GGG | + | chr5.4:9243832-9243851 | MS.gene015250:CDS | 40.0% | |
| GTTATCCTATCGGCAATGAA+TGG | - | chr5.4:9242969-9242988 | None:intergenic | 40.0% | |
| TACATCCATTCATTGCCGAT+AGG | + | chr5.4:9242961-9242980 | MS.gene015250:intron | 40.0% | |
| TATACTATATGATCAGGCGG+TGG | + | chr5.4:9242680-9242699 | MS.gene015250:intron | 40.0% | |
| TGTAGGTATACTTCCTGCAA+AGG | + | chr5.4:9243831-9243850 | MS.gene015250:CDS | 40.0% | |
| TTCTGCAACAAGAGATCTGT+GGG | + | chr5.4:9242209-9242228 | MS.gene015250:CDS | 40.0% | |
| TTGATCAGAGTAAGAAGGAG+AGG | + | chr5.4:9243679-9243698 | MS.gene015250:intron | 40.0% | |
| ! | TTGCAGGAAGTATACCTACA+CGG | - | chr5.4:9243831-9243850 | None:intergenic | 40.0% |
| !! | GAGAAAGCACCAACAAATGT+AGG | - | chr5.4:9243297-9243316 | None:intergenic | 40.0% |
| !! | TTGCTTGTTCGTCATTTTGC+TGG | + | chr5.4:9243861-9243880 | MS.gene015250:CDS | 40.0% |
| AAGCAAATCGTTCCAATCGG+TGG | + | chr5.4:9242733-9242752 | MS.gene015250:CDS | 45.0% | |
| AAGCAATTCAAGCCCTTTGC+AGG | - | chr5.4:9243847-9243866 | None:intergenic | 45.0% | |
| AAGCCTACCCCTATAGTACA+AGG | - | chr5.4:9242878-9242897 | None:intergenic | 45.0% | |
| AGAATTGGGTTTACTCACCG+TGG | + | chr5.4:9243363-9243382 | MS.gene015250:CDS | 45.0% | |
| CACATTCACGCTTCAAGTGA+GGG | - | chr5.4:9243333-9243352 | None:intergenic | 45.0% | |
| CTCTTAAGCAGTGACATCTG+TGG | - | chr5.4:9242506-9242525 | None:intergenic | 45.0% | |
| CTTCTGCAACAAGAGATCTG+TGG | + | chr5.4:9242208-9242227 | MS.gene015250:CDS | 45.0% | |
| GCGATCGATCTCAATCTTTG+GGG | + | chr5.4:9242755-9242774 | MS.gene015250:CDS | 45.0% | |
| GGCGATCGATCTCAATCTTT+GGG | + | chr5.4:9242754-9242773 | MS.gene015250:CDS | 45.0% | |
| TCACATTCACGCTTCAAGTG+AGG | - | chr5.4:9243334-9243353 | None:intergenic | 45.0% | |
| TCTCCTTGTACTATAGGGGT+AGG | + | chr5.4:9242872-9242891 | MS.gene015250:intron | 45.0% | |
| TCTGTAGAGTTCCTTTGTGC+AGG | + | chr5.4:9243976-9243995 | MS.gene015250:CDS | 45.0% | |
| TGGCGATCGATCTCAATCTT+TGG | + | chr5.4:9242753-9242772 | MS.gene015250:CDS | 45.0% | |
| TTCAGCATGCCTCTCAATAC+AGG | - | chr5.4:9242711-9242730 | None:intergenic | 45.0% | |
| TTGGGATTGCACCATGCTTT+CGG | + | chr5.4:9244174-9244193 | MS.gene015250:CDS | 45.0% | |
| !! | GAGTCACCCAGTTCTAGAAA+AGG | + | chr5.4:9243516-9243535 | MS.gene015250:CDS | 45.0% |
| !!! | ATTGAGTTTTGTTTGGGGGG+TGG | + | chr5.4:9243096-9243115 | MS.gene015250:intron | 45.0% |
| !!! | GGGAGCGTCTTTTCAATGAA+GGG | + | chr5.4:9242229-9242248 | MS.gene015250:CDS | 45.0% |
| !!! | TGGGAGCGTCTTTTCAATGA+AGG | + | chr5.4:9242228-9242247 | MS.gene015250:CDS | 45.0% |
| !!! | TTGAGTTTTGTTTGGGGGGT+GGG | + | chr5.4:9243097-9243116 | MS.gene015250:intron | 45.0% |
| !! | AACAAAAAAATTAATAATTA+AGG | - | chr5.4:9243593-9243612 | None:intergenic | 5.0% |
| CAAGAGGATGTGGCAACTGT+TGG | + | chr5.4:9243920-9243939 | MS.gene015250:CDS | 50.0% | |
| CATTACTGTGTGATGCTCCG+CGG | + | chr5.4:9243413-9243432 | MS.gene015250:CDS | 50.0% | |
| CGCATACTCGCAAGGATAAC+CGG | - | chr5.4:9242145-9242164 | None:intergenic | 50.0% | |
| CGGTTATCCTTGCGAGTATG+CGG | + | chr5.4:9242143-9242162 | MS.gene015250:CDS | 50.0% | |
| CTGTTTCGGAGTCAGAAGGA+TGG | + | chr5.4:9243479-9243498 | MS.gene015250:CDS | 50.0% | |
| GTGCTCATTGCAAGAGGATG+TGG | + | chr5.4:9243910-9243929 | MS.gene015250:CDS | 50.0% | |
| GTGGCTTCTCCTGTATTGAG+AGG | + | chr5.4:9242699-9242718 | MS.gene015250:CDS | 50.0% | |
| TCAAAGCAAACCAGCCGTGT+AGG | + | chr5.4:9243814-9243833 | MS.gene015250:CDS | 50.0% | |
| TCTACTCGGTTTAGCTGGTG+AGG | - | chr5.4:9243023-9243042 | None:intergenic | 50.0% | |
| TGACAAATGAGACTGAGCCG+CGG | - | chr5.4:9243433-9243452 | None:intergenic | 50.0% | |
| ! | AGGAAGTATACCTACACGGC+TGG | - | chr5.4:9243827-9243846 | None:intergenic | 50.0% |
| ! | GTTGCAAGTTGAGAGTCCCT+GGG | + | chr5.4:9243883-9243902 | MS.gene015250:CDS | 50.0% |
| ! | TTGCAAGTTGAGAGTCCCTG+GGG | + | chr5.4:9243884-9243903 | MS.gene015250:CDS | 50.0% |
| !!! | TGAGTTTTGTTTGGGGGGTG+GGG | + | chr5.4:9243098-9243117 | MS.gene015250:intron | 50.0% |
| GGGGTTGTGCTCATTGCAAG+AGG | + | chr5.4:9243904-9243923 | MS.gene015250:CDS | 55.0% | |
| TAACCGGTTGCTGCTGATCG+AGG | - | chr5.4:9242129-9242148 | None:intergenic | 55.0% | |
| TGAATAGGCACGGATGCTGC+CGG | + | chr5.4:9242344-9242363 | MS.gene015250:intron | 55.0% | |
| TGAGATCGATCGCCACCGAT+TGG | - | chr5.4:9242748-9242767 | None:intergenic | 55.0% | |
| TGCAATGAGCACAACCCCCA+GGG | - | chr5.4:9243902-9243921 | None:intergenic | 55.0% | |
| TTCATCGCCGCATACTCGCA+AGG | - | chr5.4:9242153-9242172 | None:intergenic | 55.0% | |
| TTGCAATGAGCACAACCCCC+AGG | - | chr5.4:9243903-9243922 | None:intergenic | 55.0% | |
| ! | GGTTGCAAGTTGAGAGTCCC+TGG | + | chr5.4:9243882-9243901 | MS.gene015250:CDS | 55.0% |
| ! | TGCAAGTTGAGAGTCCCTGG+GGG | + | chr5.4:9243885-9243904 | MS.gene015250:CDS | 55.0% |
| !!! | GAGTTTTGTTTGGGGGGTGG+GGG | + | chr5.4:9243099-9243118 | MS.gene015250:intron | 55.0% |
| ACACAGCTGCTTCGCCCTCT+CGG | - | chr5.4:9242186-9242205 | None:intergenic | 60.0% | |
| CGAGGCGAAGGAGGTGGTAT+CGG | - | chr5.4:9242111-9242130 | None:intergenic | 60.0% | |
| GTTGCTGCTGATCGAGGCGA+AGG | - | chr5.4:9242123-9242142 | None:intergenic | 60.0% | |
| TCGCCTCGATCAGCAGCAAC+CGG | + | chr5.4:9242123-9242142 | MS.gene015250:CDS | 60.0% | |
| !! | TTTTGTTTGGGGGGTGGGGG+AGG | + | chr5.4:9243102-9243121 | MS.gene015250:intron | 60.0% |
| GCTGATCGAGGCGAAGGAGG+TGG | - | chr5.4:9242117-9242136 | None:intergenic | 65.0% | |
| GCTGCTGATCGAGGCGAAGG+AGG | - | chr5.4:9242120-9242139 | None:intergenic | 65.0% | |
| ! | AGGCACGGATGCTGCCGGCT+AGG | + | chr5.4:9242349-9242368 | MS.gene015250:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 9242075 | 9244205 | 9242075 | ID=MS.gene015250 |
| chr5.4 | mRNA | 9242075 | 9244205 | 9242075 | ID=MS.gene015250.t1;Parent=MS.gene015250 |
| chr5.4 | exon | 9242075 | 9242317 | 9242075 | ID=MS.gene015250.t1.exon1;Parent=MS.gene015250.t1 |
| chr5.4 | CDS | 9242075 | 9242317 | 9242075 | ID=cds.MS.gene015250.t1;Parent=MS.gene015250.t1 |
| chr5.4 | exon | 9242696 | 9242826 | 9242696 | ID=MS.gene015250.t1.exon2;Parent=MS.gene015250.t1 |
| chr5.4 | CDS | 9242696 | 9242826 | 9242696 | ID=cds.MS.gene015250.t1;Parent=MS.gene015250.t1 |
| chr5.4 | exon | 9243264 | 9243570 | 9243264 | ID=MS.gene015250.t1.exon3;Parent=MS.gene015250.t1 |
| chr5.4 | CDS | 9243264 | 9243570 | 9243264 | ID=cds.MS.gene015250.t1;Parent=MS.gene015250.t1 |
| chr5.4 | exon | 9243687 | 9243997 | 9243687 | ID=MS.gene015250.t1.exon4;Parent=MS.gene015250.t1 |
| chr5.4 | CDS | 9243687 | 9243997 | 9243687 | ID=cds.MS.gene015250.t1;Parent=MS.gene015250.t1 |
| chr5.4 | exon | 9244085 | 9244205 | 9244085 | ID=MS.gene015250.t1.exon5;Parent=MS.gene015250.t1 |
| chr5.4 | CDS | 9244085 | 9244205 | 9244085 | ID=cds.MS.gene015250.t1;Parent=MS.gene015250.t1 |
| Gene Sequence |
| Protein sequence |
