AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015259

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015259.t1 MTR_5g015490 98.324 358 4 1 1 356 134 491 0.0 732
MS.gene015259.t1 MTR_4g097080 76.454 361 71 7 1 356 153 504 0.0 565
MS.gene015259.t1 MTR_2g099110 55.946 370 138 7 1 356 94 452 1.78e-137 399
MS.gene015259.t1 MTR_2g089100 31.926 379 229 7 1 356 72 444 1.17e-56 191
MS.gene015259.t1 MTR_1g029420 31.653 357 227 8 4 355 248 592 1.63e-52 183
MS.gene015259.t1 MTR_2g082090 32.571 350 217 7 12 355 243 579 2.30e-52 182
MS.gene015259.t1 MTR_5g094450 30.959 365 230 8 2 355 179 532 3.65e-52 181
MS.gene015259.t1 MTR_5g097480 29.945 364 231 8 2 355 195 544 4.64e-52 181
MS.gene015259.t1 MTR_3g056110 30.707 368 223 10 2 355 193 542 9.66e-50 175
MS.gene015259.t1 MTR_3g089055 31.373 357 228 8 4 355 221 565 3.65e-49 174
MS.gene015259.t1 MTR_3g089055 31.373 357 228 8 4 355 226 570 4.40e-49 173
MS.gene015259.t1 MTR_4g095500 29.293 396 235 9 1 356 79 469 3.84e-47 166
MS.gene015259.t1 MTR_2g026250 29.444 360 233 8 3 355 251 596 2.96e-46 166
MS.gene015259.t1 MTR_7g027190 31.649 376 214 12 1 355 320 673 1.33e-45 165
MS.gene015259.t1 MTR_4g133660 29.752 363 231 9 2 354 194 542 1.32e-44 161
MS.gene015259.t1 MTR_5g015950 28.288 403 232 11 1 356 55 447 1.87e-43 156
MS.gene015259.t1 MTR_3g053270 28.288 403 232 11 1 356 55 447 1.87e-43 156
MS.gene015259.t1 MTR_8g442410 30.141 355 232 9 7 355 181 525 5.65e-41 151
MS.gene015259.t1 MTR_3g065980 29.096 354 217 6 16 355 207 540 1.07e-40 150
MS.gene015259.t1 MTR_4g102790 28.729 362 236 11 4 356 315 663 1.23e-40 151
MS.gene015259.t1 MTR_4g064200 29.834 362 234 9 1 356 304 651 4.01e-39 147
MS.gene015259.t1 MTR_7g074650 29.330 358 223 13 4 356 461 793 8.15e-39 147
MS.gene015259.t1 MTR_8g020840 30.688 378 219 13 1 355 191 548 1.35e-37 142
MS.gene015259.t1 MTR_4g077760 30.579 363 218 11 4 355 216 555 2.11e-37 141
MS.gene015259.t1 MTR_5g009080 26.392 413 230 9 4 355 79 478 3.43e-37 140
MS.gene015259.t1 MTR_4g064150 27.298 359 253 4 1 356 381 734 2.89e-35 136
MS.gene015259.t1 MTR_2g097410 29.577 355 234 7 8 356 398 742 9.29e-35 135
MS.gene015259.t1 MTR_2g097310 27.147 361 244 10 3 356 291 639 1.85e-34 134
MS.gene015259.t1 MTR_4g064120 28.485 330 224 7 1 325 274 596 7.26e-34 132
MS.gene015259.t1 MTR_4g064160 27.577 359 248 5 1 356 336 685 1.66e-33 131
MS.gene015259.t1 MTR_4g104020 26.757 370 237 11 3 355 168 520 5.05e-33 129
MS.gene015259.t1 MTR_4g064180 28.746 327 221 7 4 325 277 596 2.01e-32 128
MS.gene015259.t1 MTR_2g097350 26.039 361 248 9 3 356 293 641 3.72e-32 127
MS.gene015259.t1 MTR_7g062120 25.348 359 256 5 1 356 392 741 5.55e-32 127
MS.gene015259.t1 MTR_3g022830 24.069 403 241 9 4 355 48 436 5.59e-32 125
MS.gene015259.t1 MTR_2g097467 25.770 357 250 6 3 356 311 655 1.35e-31 125
MS.gene015259.t1 MTR_2g097390 26.870 361 245 10 3 356 294 642 3.24e-31 124
MS.gene015259.t1 MTR_4g076020 27.374 358 221 14 4 356 107 430 5.61e-31 122
MS.gene015259.t1 MTR_2g097473 26.479 355 240 7 8 356 316 655 1.85e-30 122
MS.gene015259.t1 MTR_2g097463 26.705 352 243 6 8 356 317 656 3.34e-30 122
MS.gene015259.t1 MTR_3g072710 28.232 379 220 14 4 354 145 499 4.00e-27 112
MS.gene015259.t1 MTR_1g069725 27.095 358 227 14 4 354 132 462 2.73e-26 109
MS.gene015259.t1 MTR_1g096030 27.273 374 217 14 12 355 111 459 2.08e-25 107
MS.gene015259.t1 MTR_4g076140 32.338 201 126 4 7 206 74 265 8.22e-24 102
MS.gene015259.t1 MTR_2g097380 27.922 308 192 10 3 305 243 525 1.91e-23 101
MS.gene015259.t1 MTR_8g093070 26.361 349 220 15 17 356 177 497 4.68e-23 100
MS.gene015259.t1 MTR_5g058860 27.596 366 230 11 7 354 148 496 4.84e-23 100
MS.gene015259.t1 MTR_2g034280 25.683 366 242 12 4 355 226 575 8.93e-23 99.8
MS.gene015259.t1 MTR_2g034260 24.384 365 256 8 1 355 230 584 2.27e-22 98.6
MS.gene015259.t1 MTR_7g057230 26.829 287 196 6 73 354 379 656 1.51e-21 96.3
MS.gene015259.t1 MTR_1g086970 25.208 361 249 10 3 355 131 478 2.31e-20 92.4
MS.gene015259.t1 MTR_2g034250 23.967 363 255 8 4 355 233 585 2.83e-20 92.4
MS.gene015259.t1 MTR_7g109580 24.286 350 252 6 8 355 216 554 2.35e-18 86.7
MS.gene015259.t1 MTR_6g047750 25.620 363 235 11 4 355 324 662 2.49e-17 83.6
MS.gene015259.t1 MTR_4g026485 21.229 358 251 9 4 355 292 624 7.01e-14 73.2
MS.gene015259.t1 MTR_0092s0100 21.563 371 235 9 4 355 395 728 2.63e-12 68.6
MS.gene015259.t1 MTR_0092s0100 21.563 371 235 9 4 355 398 731 2.98e-12 68.2
MS.gene015259.t1 MTR_8g077940 22.715 361 246 10 4 355 205 541 7.99e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015259.t1 AT4G37650 69.106 369 97 6 1 356 166 530 0.0 514
MS.gene015259.t1 AT2G04890 32.123 358 224 8 2 355 71 413 1.06e-58 195
MS.gene015259.t1 AT5G48150 29.050 358 242 6 1 355 142 490 6.59e-50 174
MS.gene015259.t1 AT5G48150 29.050 358 242 6 1 355 142 490 6.59e-50 174
MS.gene015259.t1 AT5G48150 29.050 358 242 6 1 355 142 490 6.59e-50 174
MS.gene015259.t1 AT5G48150 29.050 358 242 6 1 355 142 490 6.59e-50 174
MS.gene015259.t1 AT3G49950 32.432 370 226 9 1 356 50 409 9.52e-50 172
MS.gene015259.t1 AT1G21450 32.877 365 222 8 1 355 242 593 1.12e-49 176
MS.gene015259.t1 AT1G50600 30.874 366 225 10 2 355 177 526 1.41e-49 174
MS.gene015259.t1 AT1G50600 30.874 366 225 10 2 355 248 597 3.82e-49 174
MS.gene015259.t1 AT1G50600 30.874 366 225 10 2 355 252 601 4.07e-49 174
MS.gene015259.t1 AT3G03450 31.778 343 214 7 17 355 219 545 1.25e-48 172
MS.gene015259.t1 AT5G17490 33.431 341 205 8 17 355 196 516 4.12e-48 170
MS.gene015259.t1 AT1G66350 33.239 352 206 11 7 355 181 506 2.51e-47 167
MS.gene015259.t1 AT2G01570 30.029 343 217 10 16 355 259 581 7.81e-41 151
MS.gene015259.t1 AT1G14920 30.321 343 216 9 16 355 207 529 1.55e-40 150
MS.gene015259.t1 AT1G50420 25.854 410 236 6 4 355 80 479 1.63e-38 143
MS.gene015259.t1 AT4G17230 26.316 361 245 8 3 356 180 526 3.15e-38 143
MS.gene015259.t1 AT4G17230 26.316 361 245 8 3 356 180 526 3.15e-38 143
MS.gene015259.t1 AT3G54220 29.558 362 220 15 4 356 316 651 1.44e-36 140
MS.gene015259.t1 AT1G63100 30.137 365 226 11 6 354 302 653 1.96e-36 139
MS.gene015259.t1 AT1G63100 30.137 365 226 11 6 354 277 628 2.15e-36 139
MS.gene015259.t1 AT5G41920 29.805 359 221 14 4 355 66 400 2.74e-34 130
MS.gene015259.t1 AT1G55580 28.198 383 228 11 10 355 73 445 7.12e-34 130
MS.gene015259.t1 AT5G66770 28.846 364 232 10 1 355 239 584 2.10e-33 130
MS.gene015259.t1 AT3G13840 29.810 369 215 13 3 355 170 510 1.27e-32 127
MS.gene015259.t1 AT2G29065 26.575 365 252 9 1 356 272 629 3.12e-32 127
MS.gene015259.t1 AT3G46600 27.731 357 243 8 4 356 27 372 5.05e-32 124
MS.gene015259.t1 AT2G37650 26.705 352 244 6 8 356 362 702 1.45e-31 125
MS.gene015259.t1 AT5G52510 28.134 359 220 9 15 355 302 640 1.51e-31 125
MS.gene015259.t1 AT2G37650 26.705 352 244 6 8 356 374 714 1.70e-31 125
MS.gene015259.t1 AT1G07530 26.331 357 250 6 4 356 419 766 2.27e-31 125
MS.gene015259.t1 AT3G46600 27.731 357 243 8 4 356 203 548 8.04e-31 123
MS.gene015259.t1 AT3G46600 27.731 357 243 8 4 356 235 580 1.49e-30 122
MS.gene015259.t1 AT1G07520 26.271 354 250 7 9 356 182 530 5.01e-30 120
MS.gene015259.t1 AT1G07520 26.271 354 250 7 9 356 182 530 5.01e-30 120
MS.gene015259.t1 AT1G07520 26.271 354 250 7 9 356 347 695 1.30e-29 120
MS.gene015259.t1 AT1G07520 26.271 354 250 7 9 356 346 694 1.44e-29 120
MS.gene015259.t1 AT3G50650 29.539 369 219 11 4 355 198 542 2.79e-29 118
MS.gene015259.t1 AT5G59450 26.836 354 246 6 8 356 254 599 2.72e-28 116
MS.gene015259.t1 AT2G29060 25.627 359 252 8 4 356 344 693 6.56e-28 115
MS.gene015259.t1 AT2G29060 25.627 359 252 8 4 356 307 656 7.43e-28 115
MS.gene015259.t1 AT4G08250 27.759 299 202 9 61 354 187 476 5.49e-24 103
MS.gene015259.t1 AT4G00150 23.514 370 217 13 5 355 232 554 1.92e-12 68.6
MS.gene015259.t1 AT3G60630 24.919 309 199 12 61 355 333 622 2.17e-12 68.6

Find 90 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGGCTGATTTAAATTT+TGG 0.142361 5.4:-9082394 MS.gene015259:CDS
TGAATAACGTTGAATTTAAA+TGG 0.226774 5.4:+9082604 None:intergenic
AAGAGTGTTTGAGATGGTTT+AGG 0.270052 5.4:-9082339 MS.gene015259:CDS
GGCTTTGTTGAGGAGGTATA+AGG 0.272310 5.4:-9082101 MS.gene015259:CDS
TTCGGTCATTCGAGAGAATA+AGG 0.284815 5.4:+9082984 None:intergenic
ACCTTCGAAGGCTTCTAAAA+TGG 0.301815 5.4:+9082825 None:intergenic
TGGGAGAGGGATAGTTGATT+TGG 0.342461 5.4:-9082245 MS.gene015259:CDS
AGGAAGTTTGTGATGATGTT+AGG 0.369294 5.4:-9082123 MS.gene015259:CDS
GAAGGTTCTGGTACCGGCTT+CGG 0.378697 5.4:+9082966 None:intergenic
AGAGTGTTTGAGATGGTTTA+GGG 0.380120 5.4:-9082338 MS.gene015259:CDS
TAGTCCATGGACTAACTTCT+TGG 0.385254 5.4:+9082875 None:intergenic
CGTTGATCGCGTTGCGGCCG+AGG 0.391480 5.4:-9082435 MS.gene015259:CDS
CTTCCACGTCAAGAATATTC+CGG 0.409628 5.4:+9082048 None:intergenic
GTTAGTCCATGGACTACTTT+CGG 0.413327 5.4:-9082868 MS.gene015259:CDS
AGCTAGGGTTCTGAAGGTTC+TGG 0.415747 5.4:+9082954 None:intergenic
GAAGGAAATTGGTGCTAGAA+TGG 0.434419 5.4:-9082653 MS.gene015259:CDS
AACGAACTAAGCTCCCCTTA+TGG 0.445036 5.4:-9083045 MS.gene015259:CDS
TTCTCTCGAATGACCGAAGC+CGG 0.449633 5.4:-9082979 MS.gene015259:CDS
TCACGGCGTTTGCATGGTGG+AGG 0.454306 5.4:-9082169 MS.gene015259:CDS
TTGATGCTTGAAAGGGAAGC+TGG 0.455749 5.4:-9082265 MS.gene015259:CDS
CAGTGACGATGGTGGTTAAA+CGG 0.455896 5.4:+9082701 None:intergenic
ATGTTAGGGCTTTGTTGAGG+AGG 0.458311 5.4:-9082108 MS.gene015259:CDS
TTCGGCCATGTTGCATGCAA+TGG 0.459991 5.4:-9082850 MS.gene015259:CDS
TTTGTTCTATGTCACCATAA+GGG 0.462505 5.4:+9083031 None:intergenic
CGGTGGTGTGGGCCAGTGCA+TGG 0.470323 5.4:-9082018 MS.gene015259:CDS
CATTCAGTAACAGTTGGTAA+TGG 0.475130 5.4:-9082493 MS.gene015259:CDS
CATGCACTGGCCCACACCAC+CGG 0.476107 5.4:+9082019 None:intergenic
GGAAGTTTGTGATGATGTTA+GGG 0.478484 5.4:-9082122 MS.gene015259:CDS
CACGGCGTTTGCATGGTGGA+GGG 0.480736 5.4:-9082168 MS.gene015259:CDS
GGTTCTGAAGGTTCTGGTAC+CGG 0.480940 5.4:+9082960 None:intergenic
AAACGCTCGTTACTCGTCTT+CGG 0.484291 5.4:+9082286 None:intergenic
ATGGTTTAGGGTTTACTTTG+AGG 0.492134 5.4:-9082326 MS.gene015259:CDS
GATGGATATGAATTTGTGAA+TGG 0.492688 5.4:-9082367 MS.gene015259:CDS
GCATGGTGGAGGGTTTAATA+CGG 0.512491 5.4:-9082158 MS.gene015259:CDS
TGATTTGGTGGCATGTGCTC+CGG 0.516469 5.4:-9082230 MS.gene015259:CDS
TTATCAAGGCCTCCATGCAC+TGG 0.517596 5.4:+9082006 None:intergenic
GGAAGGAACAACCGGTGGTG+TGG 0.520705 5.4:-9082030 MS.gene015259:CDS
GAGAGGGATAGTTGATTTGG+TGG 0.522738 5.4:-9082242 MS.gene015259:CDS
CTTGACGTGGAAGGAACAAC+CGG 0.523785 5.4:-9082038 MS.gene015259:CDS
AGGAAGGGTGGTCGATGATA+CGG 0.526878 5.4:-9082081 MS.gene015259:CDS
CTCCGTTCAATCGACTCTGC+CGG 0.527978 5.4:+9082211 None:intergenic
ACGAGCGTTTGATGCTTGAA+AGG 0.528089 5.4:-9082273 MS.gene015259:CDS
ATTCAACGTTATTCATCACT+CGG 0.529452 5.4:-9082596 MS.gene015259:CDS
GAAGGAACAACCGGTGGTGT+GGG 0.535300 5.4:-9082029 MS.gene015259:CDS
GTCGATTGAACGGAGAGAAA+CGG 0.535584 5.4:-9082203 MS.gene015259:CDS
TCAACCACTGTTACTATCCT+CGG 0.540676 5.4:+9082418 None:intergenic
TTGTTCTATGTCACCATAAG+GGG 0.542773 5.4:+9083032 None:intergenic
CTTGAAAGGGAAGCTGGGAG+AGG 0.543069 5.4:-9082259 MS.gene015259:CDS
CGGAATATTCTTGACGTGGA+AGG 0.543303 5.4:-9082047 MS.gene015259:CDS
CGAGCGTTTGATGCTTGAAA+GGG 0.543796 5.4:-9082272 MS.gene015259:CDS
GGAGAGAAACGGCGGTGAGA+TGG 0.549109 5.4:-9082192 MS.gene015259:CDS
TTAACCACCATCGTCACTGC+TGG 0.551969 5.4:-9082697 MS.gene015259:CDS
GATAGTAACAGTGGTTGAAG+AGG 0.553960 5.4:-9082413 MS.gene015259:CDS
TGCTGAAGCTAGGGTTCTGA+AGG 0.554762 5.4:+9082948 None:intergenic
GCTTTGCATTCAGTAACAGT+TGG 0.557029 5.4:-9082499 MS.gene015259:CDS
AGATGGTCACGGCGTTTGCA+TGG 0.559260 5.4:-9082175 MS.gene015259:CDS
AATTCCAAGAAGTTAGTCCA+TGG 0.567956 5.4:-9082879 MS.gene015259:CDS
CAACTTAGAATCACCTTCGA+AGG 0.574160 5.4:+9082813 None:intergenic
ATGATACGGTGTAATGATGC+CGG 0.576413 5.4:-9082067 MS.gene015259:CDS
ACCACCATCGTCACTGCTGG+TGG 0.581472 5.4:-9082694 MS.gene015259:CDS
AGTAACAGTGGTTGAAGAGG+AGG 0.584206 5.4:-9082410 MS.gene015259:CDS
CTCCGGCAGAGTCGATTGAA+CGG 0.585476 5.4:-9082213 MS.gene015259:CDS
TGATGCTTGAAAGGGAAGCT+GGG 0.585745 5.4:-9082264 MS.gene015259:CDS
TGTTGAGGAGGTATAAGGAA+GGG 0.588341 5.4:-9082096 MS.gene015259:CDS
TTGTTGAGGAGGTATAAGGA+AGG 0.589974 5.4:-9082097 MS.gene015259:CDS
CGGAGTATCATCAGCACGAG+TGG 0.595472 5.4:+9082729 None:intergenic
GTAACAGTTGGTAATGGTAA+CGG 0.598007 5.4:-9082487 MS.gene015259:CDS
TCATTCGAGAGAATAAGGCT+TGG 0.601622 5.4:+9082989 None:intergenic
TTGAAAGGGAAGCTGGGAGA+GGG 0.603420 5.4:-9082258 MS.gene015259:CDS
TTCAACGTTATTCATCACTC+GGG 0.607328 5.4:-9082595 MS.gene015259:CDS
ATGATGTTAGGGCTTTGTTG+AGG 0.607674 5.4:-9082111 MS.gene015259:CDS
ACATGGCCGAAAGTAGTCCA+TGG 0.613056 5.4:+9082862 None:intergenic
AAGCTATCAACGCGTCGCGA+CGG 0.617261 5.4:+9082458 None:intergenic
TGGCGCCATTGCATGCAACA+TGG 0.621243 5.4:+9082845 None:intergenic
TGAGGAGGTATAAGGAAGGG+TGG 0.622191 5.4:-9082093 MS.gene015259:CDS
TAGCTTCGTTGATCGCGTTG+CGG 0.632402 5.4:-9082441 MS.gene015259:CDS
TGGTCACGGCGTTTGCATGG+TGG 0.640251 5.4:-9082172 MS.gene015259:CDS
AAACGGCGGTGAGATGGTCA+CGG 0.645102 5.4:-9082186 MS.gene015259:CDS
TAATACGGTGGCGTTTAGTG+AGG 0.648084 5.4:-9082143 MS.gene015259:CDS
AGAACCACCAGCAGTGACGA+TGG 0.652328 5.4:+9082690 None:intergenic
TGGTGGAGGGTTTAATACGG+TGG 0.662791 5.4:-9082155 MS.gene015259:CDS
ATGCCGGAATATTCTTGACG+TGG 0.670161 5.4:-9082051 MS.gene015259:CDS
GTAACACTTATTGCACTCAG+TGG 0.674128 5.4:-9082774 MS.gene015259:CDS
ATGGTGGTTAAACGGAGGTG+CGG 0.674756 5.4:+9082709 None:intergenic
TGGTGTGGGCCAGTGCATGG+AGG 0.695562 5.4:-9082015 MS.gene015259:CDS
GACGTGGAAGGAACAACCGG+TGG 0.699506 5.4:-9082035 MS.gene015259:CDS
GCGGCCGAGGATAGTAACAG+TGG 0.704672 5.4:-9082422 MS.gene015259:CDS
ACCACCAGCAGTGACGATGG+TGG 0.722652 5.4:+9082693 None:intergenic
GATTGAACGGAGAGAAACGG+CGG 0.736491 5.4:-9082200 MS.gene015259:CDS
TGACGATGGTGGTTAAACGG+AGG 0.736521 5.4:+9082704 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTCTGATTTAAATTTTT+TGG - chr5.4:9082497-9082516 MS.gene015259:CDS 15.0%
!! TGAATAACGTTGAATTTAAA+TGG + chr5.4:9082465-9082484 None:intergenic 20.0%
!!! GATTTAAATTTTGGTAATGA+TGG - chr5.4:9082681-9082700 MS.gene015259:CDS 20.0%
! CAAAAAGTTATGAAGGAAAT+TGG - chr5.4:9082402-9082421 MS.gene015259:CDS 25.0%
! TTCTGTTCAAAAAGTTATGA+AGG - chr5.4:9082395-9082414 MS.gene015259:CDS 25.0%
ATTCAACGTTATTCATCACT+CGG - chr5.4:9082470-9082489 MS.gene015259:CDS 30.0%
GAAAAATTCGCTAGACTTAT+GGG - chr5.4:9082435-9082454 MS.gene015259:CDS 30.0%
GATGGATATGAATTTGTGAA+TGG - chr5.4:9082699-9082718 MS.gene015259:CDS 30.0%
TTTGTTCTATGTCACCATAA+GGG + chr5.4:9082038-9082057 None:intergenic 30.0%
! GACTAACTTCTTGGAATTTT+AGG + chr5.4:9082185-9082204 None:intergenic 30.0%
! TTTTGTTCTATGTCACCATA+AGG + chr5.4:9082039-9082058 None:intergenic 30.0%
AATTCCAAGAAGTTAGTCCA+TGG - chr5.4:9082187-9082206 MS.gene015259:CDS 35.0%
GGAAAAATTCGCTAGACTTA+TGG - chr5.4:9082434-9082453 MS.gene015259:CDS 35.0%
TTCAACGTTATTCATCACTC+GGG - chr5.4:9082471-9082490 MS.gene015259:CDS 35.0%
TTGTTCTATGTCACCATAAG+GGG + chr5.4:9082037-9082056 None:intergenic 35.0%
! AGAGTGTTTGAGATGGTTTA+GGG - chr5.4:9082728-9082747 MS.gene015259:CDS 35.0%
! AGGAAGTTTGTGATGATGTT+AGG - chr5.4:9082943-9082962 MS.gene015259:CDS 35.0%
! ATGGTTTAGGGTTTACTTTG+AGG - chr5.4:9082740-9082759 MS.gene015259:CDS 35.0%
! GGAAGTTTGTGATGATGTTA+GGG - chr5.4:9082944-9082963 MS.gene015259:CDS 35.0%
! TTTTTCTGATGCTGAAGCTA+GGG + chr5.4:9082130-9082149 None:intergenic 35.0%
!! AAGAGTGTTTGAGATGGTTT+AGG - chr5.4:9082727-9082746 MS.gene015259:CDS 35.0%
!! CATTCAGTAACAGTTGGTAA+TGG - chr5.4:9082573-9082592 MS.gene015259:CDS 35.0%
!! GAGGAGGCTGATTTAAATTT+TGG - chr5.4:9082672-9082691 MS.gene015259:CDS 35.0%
!! GTAACAGTTGGTAATGGTAA+CGG - chr5.4:9082579-9082598 MS.gene015259:CDS 35.0%
!!! GTTTTGAAGAGTGTTTGAGA+TGG - chr5.4:9082721-9082740 MS.gene015259:CDS 35.0%
!!! TTTTTTCTGATGCTGAAGCT+AGG + chr5.4:9082131-9082150 None:intergenic 35.0%
ATGATACGGTGTAATGATGC+CGG - chr5.4:9082999-9083018 MS.gene015259:CDS 40.0%
CAACTTAGAATCACCTTCGA+AGG + chr5.4:9082256-9082275 None:intergenic 40.0%
CTTCCACGTCAAGAATATTC+CGG + chr5.4:9083021-9083040 None:intergenic 40.0%
GATAGTAACAGTGGTTGAAG+AGG - chr5.4:9082653-9082672 MS.gene015259:CDS 40.0%
GCTTTGCATTCAGTAACAGT+TGG - chr5.4:9082567-9082586 MS.gene015259:CDS 40.0%
GTAACACTTATTGCACTCAG+TGG - chr5.4:9082292-9082311 MS.gene015259:CDS 40.0%
TCAACCACTGTTACTATCCT+CGG + chr5.4:9082651-9082670 None:intergenic 40.0%
TCATTCGAGAGAATAAGGCT+TGG + chr5.4:9082080-9082099 None:intergenic 40.0%
TTCGGTCATTCGAGAGAATA+AGG + chr5.4:9082085-9082104 None:intergenic 40.0%
! ACCTTCGAAGGCTTCTAAAA+TGG + chr5.4:9082244-9082263 None:intergenic 40.0%
! GTTAGTCCATGGACTACTTT+CGG - chr5.4:9082198-9082217 MS.gene015259:CDS 40.0%
! TAGTCCATGGACTAACTTCT+TGG + chr5.4:9082194-9082213 None:intergenic 40.0%
! TGTTGAGGAGGTATAAGGAA+GGG - chr5.4:9082970-9082989 MS.gene015259:CDS 40.0%
! TTGTTGAGGAGGTATAAGGA+AGG - chr5.4:9082969-9082988 MS.gene015259:CDS 40.0%
!! ATGATGTTAGGGCTTTGTTG+AGG - chr5.4:9082955-9082974 MS.gene015259:CDS 40.0%
!! GAAGGAAATTGGTGCTAGAA+TGG - chr5.4:9082413-9082432 MS.gene015259:CDS 40.0%
AAACGCTCGTTACTCGTCTT+CGG + chr5.4:9082783-9082802 None:intergenic 45.0%
AACGAACTAAGCTCCCCTTA+TGG - chr5.4:9082021-9082040 MS.gene015259:CDS 45.0%
ACGAGCGTTTGATGCTTGAA+AGG - chr5.4:9082793-9082812 MS.gene015259:CDS 45.0%
AGTAACAGTGGTTGAAGAGG+AGG - chr5.4:9082656-9082675 MS.gene015259:CDS 45.0%
ATGCCGGAATATTCTTGACG+TGG - chr5.4:9083015-9083034 MS.gene015259:CDS 45.0%
CGAGCGTTTGATGCTTGAAA+GGG - chr5.4:9082794-9082813 MS.gene015259:CDS 45.0%
CGGAATATTCTTGACGTGGA+AGG - chr5.4:9083019-9083038 MS.gene015259:CDS 45.0%
GTCGATTGAACGGAGAGAAA+CGG - chr5.4:9082863-9082882 MS.gene015259:CDS 45.0%
TAATACGGTGGCGTTTAGTG+AGG - chr5.4:9082923-9082942 MS.gene015259:CDS 45.0%
TGATGCTTGAAAGGGAAGCT+GGG - chr5.4:9082802-9082821 MS.gene015259:CDS 45.0%
TGGGAGAGGGATAGTTGATT+TGG - chr5.4:9082821-9082840 MS.gene015259:CDS 45.0%
TTGATGCTTGAAAGGGAAGC+TGG - chr5.4:9082801-9082820 MS.gene015259:CDS 45.0%
! CAGTGACGATGGTGGTTAAA+CGG + chr5.4:9082368-9082387 None:intergenic 45.0%
! GCATGGTGGAGGGTTTAATA+CGG - chr5.4:9082908-9082927 MS.gene015259:CDS 45.0%
!! ATGTTAGGGCTTTGTTGAGG+AGG - chr5.4:9082958-9082977 MS.gene015259:CDS 45.0%
!! GAGAGGGATAGTTGATTTGG+TGG - chr5.4:9082824-9082843 MS.gene015259:CDS 45.0%
!! GCCATTTTAGAAGCCTTCGA+AGG - chr5.4:9082240-9082259 MS.gene015259:CDS 45.0%
!! GGCTTTGTTGAGGAGGTATA+AGG - chr5.4:9082965-9082984 MS.gene015259:CDS 45.0%
ACATGGCCGAAAGTAGTCCA+TGG + chr5.4:9082207-9082226 None:intergenic 50.0%
AGGAAGGGTGGTCGATGATA+CGG - chr5.4:9082985-9083004 MS.gene015259:CDS 50.0%
ATGGTGGTTAAACGGAGGTG+CGG + chr5.4:9082360-9082379 None:intergenic 50.0%
CTTGACGTGGAAGGAACAAC+CGG - chr5.4:9083028-9083047 MS.gene015259:CDS 50.0%
GATTGAACGGAGAGAAACGG+CGG - chr5.4:9082866-9082885 MS.gene015259:CDS 50.0%
TAGCTTCGTTGATCGCGTTG+CGG - chr5.4:9082625-9082644 MS.gene015259:CDS 50.0%
TGGTGGAGGGTTTAATACGG+TGG - chr5.4:9082911-9082930 MS.gene015259:CDS 50.0%
TTAACCACCATCGTCACTGC+TGG - chr5.4:9082369-9082388 MS.gene015259:CDS 50.0%
TTCGGCCATGTTGCATGCAA+TGG - chr5.4:9082216-9082235 MS.gene015259:CDS 50.0%
TTCTCTCGAATGACCGAAGC+CGG - chr5.4:9082087-9082106 MS.gene015259:CDS 50.0%
TTGAAAGGGAAGCTGGGAGA+GGG - chr5.4:9082808-9082827 MS.gene015259:CDS 50.0%
! GCCAACGCTTCAAAAAGCGT+TGG + chr5.4:9082318-9082337 None:intergenic 50.0%
! TGACGATGGTGGTTAAACGG+AGG + chr5.4:9082365-9082384 None:intergenic 50.0%
! TGAGGAGGTATAAGGAAGGG+TGG - chr5.4:9082973-9082992 MS.gene015259:CDS 50.0%
! TGCTGAAGCTAGGGTTCTGA+AGG + chr5.4:9082121-9082140 None:intergenic 50.0%
!! AGCTAGGGTTCTGAAGGTTC+TGG + chr5.4:9082115-9082134 None:intergenic 50.0%
!! GGTTCTGAAGGTTCTGGTAC+CGG + chr5.4:9082109-9082128 None:intergenic 50.0%
!! TGATTTGGTGGCATGTGCTC+CGG - chr5.4:9082836-9082855 MS.gene015259:CDS 50.0%
!!! GCCAACGCTTTTTGAAGCGT+TGG - chr5.4:9082314-9082333 MS.gene015259:CDS 50.0%
AAACGGCGGTGAGATGGTCA+CGG - chr5.4:9082880-9082899 MS.gene015259:CDS 55.0%
AAGCTATCAACGCGTCGCGA+CGG + chr5.4:9082611-9082630 None:intergenic 55.0%
AGAACCACCAGCAGTGACGA+TGG + chr5.4:9082379-9082398 None:intergenic 55.0%
AGATGGTCACGGCGTTTGCA+TGG - chr5.4:9082891-9082910 MS.gene015259:CDS 55.0%
CTCCGGCAGAGTCGATTGAA+CGG - chr5.4:9082853-9082872 MS.gene015259:CDS 55.0%
CTTGAAAGGGAAGCTGGGAG+AGG - chr5.4:9082807-9082826 MS.gene015259:CDS 55.0%
GAAGGAACAACCGGTGGTGT+GGG - chr5.4:9083037-9083056 MS.gene015259:CDS 55.0%
TGGCGCCATTGCATGCAACA+TGG + chr5.4:9082224-9082243 None:intergenic 55.0%
! CGGAGTATCATCAGCACGAG+TGG + chr5.4:9082340-9082359 None:intergenic 55.0%
! CTCCGTTCAATCGACTCTGC+CGG + chr5.4:9082858-9082877 None:intergenic 55.0%
!! GAAGGTTCTGGTACCGGCTT+CGG + chr5.4:9082103-9082122 None:intergenic 55.0%
ACCACCAGCAGTGACGATGG+TGG + chr5.4:9082376-9082395 None:intergenic 60.0%
ACCACCATCGTCACTGCTGG+TGG - chr5.4:9082372-9082391 MS.gene015259:CDS 60.0%
GACGTGGAAGGAACAACCGG+TGG - chr5.4:9083031-9083050 MS.gene015259:CDS 60.0%
GCGGCCGAGGATAGTAACAG+TGG - chr5.4:9082644-9082663 MS.gene015259:CDS 60.0%
GGAAGGAACAACCGGTGGTG+TGG - chr5.4:9083036-9083055 MS.gene015259:CDS 60.0%
GGAGAGAAACGGCGGTGAGA+TGG - chr5.4:9082874-9082893 MS.gene015259:CDS 60.0%
TCACGGCGTTTGCATGGTGG+AGG - chr5.4:9082897-9082916 MS.gene015259:CDS 60.0%
TGGTCACGGCGTTTGCATGG+TGG - chr5.4:9082894-9082913 MS.gene015259:CDS 60.0%
! CACGGCGTTTGCATGGTGGA+GGG - chr5.4:9082898-9082917 MS.gene015259:CDS 60.0%
TGGTGTGGGCCAGTGCATGG+AGG - chr5.4:9083051-9083070 MS.gene015259:CDS 65.0%
! CATGCACTGGCCCACACCAC+CGG + chr5.4:9083050-9083069 None:intergenic 65.0%
CGGTGGTGTGGGCCAGTGCA+TGG - chr5.4:9083048-9083067 MS.gene015259:CDS 70.0%
CGTTGATCGCGTTGCGGCCG+AGG - chr5.4:9082631-9082650 MS.gene015259:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 9082009 9083079 9082009 ID=MS.gene015259
chr5.4 mRNA 9082009 9083079 9082009 ID=MS.gene015259.t1;Parent=MS.gene015259
chr5.4 exon 9082009 9083079 9082009 ID=MS.gene015259.t1.exon1;Parent=MS.gene015259.t1
chr5.4 CDS 9082009 9083079 9082009 ID=cds.MS.gene015259.t1;Parent=MS.gene015259.t1
Gene Sequence

>MS.gene015259

ATGTGGATGCTCAACGAACTAAGCTCCCCTTATGGTGACATAGAACAAAAACTAGCTGCATATTTTCTCCAAGCCTTATTCTCTCGAATGACCGAAGCCGGTACCAGAACCTTCAGAACCCTAGCTTCAGCATCAGAAAAAACTTGCTCATTCGAATCAACACGAAAAACAGTCCTAAAATTCCAAGAAGTTAGTCCATGGACTACTTTCGGCCATGTTGCATGCAATGGCGCCATTTTAGAAGCCTTCGAAGGTGATTCTAAGTTGCACATAATTGATATTAGTAACACTTATTGCACTCAGTGGCCAACGCTTTTTGAAGCGTTGGCCACTCGTGCTGATGATACTCCGCACCTCCGTTTAACCACCATCGTCACTGCTGGTGGTTCTGTTCAAAAAGTTATGAAGGAAATTGGTGCTAGAATGGAAAAATTCGCTAGACTTATGGGAGTTCCATTTAAATTCAACGTTATTCATCACTCGGGCGATCTTTCTGATTTAAATTTTTTGGATTTAGATATTAAAGAAGATGAAGCTTTAGCTGTTAATTGTGTTAATGCTTTGCATTCAGTAACAGTTGGTAATGGTAACGGTAATAACCGTCGCGACGCGTTGATAGCTTCGTTGATCGCGTTGCGGCCGAGGATAGTAACAGTGGTTGAAGAGGAGGCTGATTTAAATTTTGGTAATGATGGATATGAATTTGTGAATGGTTTTGAAGAGTGTTTGAGATGGTTTAGGGTTTACTTTGAGGCATTAGAAGAGAGTTTTCCGAAGACGAGTAACGAGCGTTTGATGCTTGAAAGGGAAGCTGGGAGAGGGATAGTTGATTTGGTGGCATGTGCTCCGGCAGAGTCGATTGAACGGAGAGAAACGGCGGTGAGATGGTCACGGCGTTTGCATGGTGGAGGGTTTAATACGGTGGCGTTTAGTGAGGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGGAGGTATAAGGAAGGGTGGTCGATGATACGGTGTAATGATGCCGGAATATTCTTGACGTGGAAGGAACAACCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA
Protein sequence

>MS.gene015259.t1

MWMLNELSSPYGDIEQKLAAYFLQALFSRMTEAGTRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEAFEGDSKLHIIDISNTYCTQWPTLFEALATRADDTPHLRLTTIVTAGGSVQKVMKEIGARMEKFARLMGVPFKFNVIHHSGDLSDLNFLDLDIKEDEALAVNCVNALHSVTVGNGNGNNRRDALIASLIALRPRIVTVVEEEADLNFGNDGYEFVNGFEECLRWFRVYFEALEESFPKTSNERLMLEREAGRGIVDLVACAPAESIERRETAVRWSRRLHGGGFNTVAFSEEVCDDVRALLRRYKEGWSMIRCNDAGIFLTWKEQPVVWASAWRP