Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015286.t1 | XP_003611533.1 | 88.1 | 236 | 8 | 4 | 2 | 232 | 89 | 309 | 4.20E-107 | 397.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015286.t1 | Q9FKL2 | 30.7 | 241 | 121 | 11 | 2 | 207 | 89 | 318 | 6.3e-11 | 69.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015286.t1 | G7K165 | 88.1 | 236 | 8 | 4 | 2 | 232 | 89 | 309 | 3.0e-107 | 397.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015286.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015286.t1 | MTR_5g014990 | 88.136 | 236 | 8 | 4 | 2 | 232 | 89 | 309 | 1.41e-137 | 388 |
| MS.gene015286.t1 | MTR_4g097570 | 40.756 | 238 | 94 | 13 | 2 | 229 | 90 | 290 | 8.09e-25 | 99.8 |
| MS.gene015286.t1 | MTR_4g097570 | 40.756 | 238 | 94 | 13 | 2 | 229 | 89 | 289 | 8.73e-25 | 99.4 |
| MS.gene015286.t1 | MTR_1g017140 | 60.494 | 81 | 27 | 2 | 2 | 79 | 89 | 167 | 6.36e-22 | 92.4 |
| MS.gene015286.t1 | MTR_3g103570 | 51.111 | 90 | 32 | 4 | 2 | 86 | 89 | 171 | 1.32e-18 | 83.6 |
| MS.gene015286.t1 | MTR_4g057635 | 84.848 | 33 | 5 | 0 | 2 | 34 | 89 | 121 | 2.07e-12 | 65.9 |
| MS.gene015286.t1 | MTR_3g461490 | 80.645 | 31 | 6 | 0 | 2 | 32 | 88 | 118 | 4.24e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015286.t1 | AT5G65790 | 79.245 | 53 | 4 | 2 | 2 | 54 | 89 | 134 | 1.94e-17 | 80.5 |
| MS.gene015286.t1 | AT3G49690 | 32.159 | 227 | 117 | 9 | 2 | 203 | 89 | 303 | 1.64e-16 | 77.4 |
| MS.gene015286.t1 | AT5G57620 | 85.714 | 35 | 5 | 0 | 2 | 36 | 89 | 123 | 2.10e-14 | 71.6 |
| MS.gene015286.t1 | AT4G37780 | 72.727 | 44 | 12 | 0 | 2 | 45 | 89 | 132 | 2.67e-14 | 71.2 |
| MS.gene015286.t1 | AT5G23000 | 46.970 | 66 | 35 | 0 | 2 | 67 | 89 | 154 | 7.59e-13 | 67.0 |
| MS.gene015286.t1 | AT5G56110 | 83.871 | 31 | 5 | 0 | 2 | 32 | 88 | 118 | 1.60e-11 | 63.2 |
| MS.gene015286.t1 | AT2G16720 | 78.125 | 32 | 7 | 0 | 2 | 33 | 88 | 119 | 9.71e-11 | 60.5 |
Find 50 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGGAGTCTAGGTATTT+TGG | 0.172232 | 5.4:+8653863 | MS.gene015286:CDS |
| GTATTACTTTCCATGGAAAA+AGG | 0.187062 | 5.4:-8653560 | None:intergenic |
| GTATTAGTTCAGCTCCTTAT+TGG | 0.241830 | 5.4:+8653414 | MS.gene015286:CDS |
| AGAACAATTGATGGTTTATA+TGG | 0.249714 | 5.4:+8653695 | MS.gene015286:CDS |
| GTTCATATCATAATCAATTA+TGG | 0.256120 | 5.4:-8653480 | None:intergenic |
| TTGGAATGCAAATGCAATAA+AGG | 0.260472 | 5.4:+8653882 | MS.gene015286:CDS |
| TTCTATCCATTATTTGTTGT+TGG | 0.313622 | 5.4:-8653676 | None:intergenic |
| TGTGAACCAACAACAAATAA+TGG | 0.320313 | 5.4:+8653670 | MS.gene015286:CDS |
| TTGGGGAGATATGAACTCTT+TGG | 0.325613 | 5.4:+8653784 | MS.gene015286:CDS |
| GAATTTGATGATGGCGGCTT+CGG | 0.332397 | 5.4:+8653382 | MS.gene015286:CDS |
| ATTATGGATGAATTTGAAAC+TGG | 0.368691 | 5.4:-8653464 | None:intergenic |
| GAATACTCTGCAGGCCAATA+AGG | 0.382763 | 5.4:-8653428 | None:intergenic |
| AATTTGATGATGGCGGCTTC+GGG | 0.391031 | 5.4:+8653383 | MS.gene015286:CDS |
| GGAATGTTCATTATGCTTGT+TGG | 0.391809 | 5.4:-8653533 | None:intergenic |
| CTTGTTTCATGTTGCTAACT+CGG | 0.393201 | 5.4:-8653337 | None:intergenic |
| CTTGTGGAATTGATCCTTGT+TGG | 0.404625 | 5.4:-8653829 | None:intergenic |
| CAGCCATCACATATATTTCA+AGG | 0.414160 | 5.4:+8653608 | MS.gene015286:CDS |
| ATAATGGATAGAACAATTGA+TGG | 0.418211 | 5.4:+8653686 | MS.gene015286:CDS |
| GCTCCTTCCTTTGTTTCCCA+AGG | 0.424838 | 5.4:-8653292 | None:intergenic |
| GGCTGAAGAAGAAGCTCCTT+GGG | 0.431231 | 5.4:+8653276 | MS.gene015286:CDS |
| TTCAACAGAAAGCACTAGTT+GGG | 0.432311 | 5.4:+8653766 | MS.gene015286:CDS |
| TGTAATTGTATTACTTTCCA+TGG | 0.441381 | 5.4:-8653567 | None:intergenic |
| AATTGATGGTTTATATGGAA+TGG | 0.453337 | 5.4:+8653700 | MS.gene015286:CDS |
| CTTCAACAGAAAGCACTAGT+TGG | 0.476988 | 5.4:+8653765 | MS.gene015286:CDS |
| AGGCTGAAGAAGAAGCTCCT+TGG | 0.483463 | 5.4:+8653275 | MS.gene015286:CDS |
| ATAATGATATAAAGAACTAC+TGG | 0.487898 | 5.4:+8653246 | MS.gene015286:CDS |
| ACAAGCTCACTTAAATCCCT+TGG | 0.501931 | 5.4:-8653644 | None:intergenic |
| ATGGCGGCTTCGGGTGTCAA+TGG | 0.521322 | 5.4:+8653392 | MS.gene015286:CDS |
| AACAAATCAGAATTTGATGA+TGG | 0.534389 | 5.4:+8653373 | MS.gene015286:CDS |
| TCTTTGGTTTATGACTATGA+AGG | 0.535991 | 5.4:+8653800 | MS.gene015286:CDS |
| ATATCATTATCCGTTCGTCC+TGG | 0.550639 | 5.4:-8653233 | None:intergenic |
| TAAAGAACTACTGGAACACT+AGG | 0.555810 | 5.4:+8653255 | MS.gene015286:CDS |
| GGATGAACAGAATACTCTGC+AGG | 0.563118 | 5.4:-8653437 | None:intergenic |
| TCAAAAGCAATAGCATCTTG+TGG | 0.572148 | 5.4:-8653845 | None:intergenic |
| AGCCATCACATATATTTCAA+GGG | 0.573988 | 5.4:+8653609 | MS.gene015286:CDS |
| ATTATAGCAGCACAATTACC+AGG | 0.578454 | 5.4:+8653215 | MS.gene015286:CDS |
| AGAAGCTCCTTGGGAAACAA+AGG | 0.580754 | 5.4:+8653285 | MS.gene015286:CDS |
| TATGAAGGTTGTTGCCAACA+AGG | 0.584761 | 5.4:+8653815 | MS.gene015286:CDS |
| AAATCAGAATTTGATGATGG+CGG | 0.588687 | 5.4:+8653376 | MS.gene015286:CDS |
| CTTGAAATATATGTGATGGC+TGG | 0.591282 | 5.4:-8653607 | None:intergenic |
| AGTAATACAATTACAAACAA+TGG | 0.598309 | 5.4:+8653575 | MS.gene015286:CDS |
| TCTATTGACATGAGCAATGG+TGG | 0.599559 | 5.4:+8653725 | MS.gene015286:CDS |
| AGCACAATTACCAGGACGAA+CGG | 0.615114 | 5.4:+8653223 | MS.gene015286:CDS |
| AATACAATTACAAACAATGG+TGG | 0.622206 | 5.4:+8653578 | MS.gene015286:CDS |
| AACCCTTGAAATATATGTGA+TGG | 0.624141 | 5.4:-8653611 | None:intergenic |
| GATGAATTTGAAACTGGCAT+AGG | 0.626545 | 5.4:-8653458 | None:intergenic |
| GCTCCTTGGGAAACAAAGGA+AGG | 0.636745 | 5.4:+8653289 | MS.gene015286:CDS |
| GAATCTATTGACATGAGCAA+TGG | 0.644932 | 5.4:+8653722 | MS.gene015286:CDS |
| TGGATGAAGCAAGCTTGTGA+AGG | 0.667571 | 5.4:-8653513 | None:intergenic |
| TCAACAGAAAGCACTAGTTG+GGG | 0.700480 | 5.4:+8653767 | MS.gene015286:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTATTTTTAAAAAAT+AGG | - | chr5.4:8652196-8652215 | None:intergenic | 0.0% |
| !! | ATTAAATTAATCATTATGTA+TGG | - | chr5.4:8652730-8652749 | None:intergenic | 10.0% |
| !!! | AACTTATTTATTTATTTTTG+TGG | + | chr5.4:8652798-8652817 | MS.gene015286:intron | 10.0% |
| !!! | CTAATTAATTAATAAGTTTT+AGG | - | chr5.4:8653048-8653067 | None:intergenic | 10.0% |
| !! | TTACTTTATGACTAAATTAA+TGG | - | chr5.4:8652321-8652340 | None:intergenic | 15.0% |
| !! | AGTAATACAATTACAAACAA+TGG | + | chr5.4:8653575-8653594 | MS.gene015286:CDS | 20.0% |
| !! | ATAATGATATAAAGAACTAC+TGG | + | chr5.4:8653246-8653265 | MS.gene015286:CDS | 20.0% |
| !! | GTTCATATCATAATCAATTA+TGG | - | chr5.4:8653483-8653502 | None:intergenic | 20.0% |
| !! | GTTTATATATAAAGAAGAGT+GGG | - | chr5.4:8652423-8652442 | None:intergenic | 20.0% |
| !! | TGTTTATATATAAAGAAGAG+TGG | - | chr5.4:8652424-8652443 | None:intergenic | 20.0% |
| !! | TTATCATCAACTCATAATAA+AGG | + | chr5.4:8652464-8652483 | MS.gene015286:intron | 20.0% |
| !! | TTCTTTGAATATGTATATGT+AGG | + | chr5.4:8653186-8653205 | MS.gene015286:intron | 20.0% |
| !!! | GACTAAATTAATGGATAAAT+TGG | - | chr5.4:8652312-8652331 | None:intergenic | 20.0% |
| ! | AACAAATCAGAATTTGATGA+TGG | + | chr5.4:8653373-8653392 | MS.gene015286:CDS | 25.0% |
| ! | AAGTCTTACATAGAACAAAA+TGG | + | chr5.4:8652594-8652613 | MS.gene015286:intron | 25.0% |
| ! | AATACAATTACAAACAATGG+TGG | + | chr5.4:8653578-8653597 | MS.gene015286:CDS | 25.0% |
| ! | AATTGGAGTCTACAAATTTA+TGG | - | chr5.4:8653153-8653172 | None:intergenic | 25.0% |
| ! | AGAGATATGAATTATTGTTG+TGG | - | chr5.4:8652173-8652192 | None:intergenic | 25.0% |
| ! | ATATGAATTATTGTTGTGGA+TGG | - | chr5.4:8652169-8652188 | None:intergenic | 25.0% |
| ! | CTTAGACCAAATATTAAACA+TGG | + | chr5.4:8652883-8652902 | MS.gene015286:intron | 25.0% |
| ! | TATGAATTATTGTTGTGGAT+GGG | - | chr5.4:8652168-8652187 | None:intergenic | 25.0% |
| ! | TATTACTTTCCATGGAAAAA+GGG | - | chr5.4:8653562-8653581 | None:intergenic | 25.0% |
| ! | TGTAATTGTATTACTTTCCA+TGG | - | chr5.4:8653570-8653589 | None:intergenic | 25.0% |
| ! | TTTGAATATGTATATGTAGG+TGG | + | chr5.4:8653189-8653208 | MS.gene015286:intron | 25.0% |
| !! | AATTGATGGTTTATATGGAA+TGG | + | chr5.4:8653700-8653719 | MS.gene015286:CDS | 25.0% |
| !! | AGAACAATTGATGGTTTATA+TGG | + | chr5.4:8653695-8653714 | MS.gene015286:CDS | 25.0% |
| !! | ATTATGGATGAATTTGAAAC+TGG | - | chr5.4:8653467-8653486 | None:intergenic | 25.0% |
| !! | GAGAAATTTGGTTTAGAAAA+AGG | - | chr5.4:8652365-8652384 | None:intergenic | 25.0% |
| !!! | ATAATGGATAGAACAATTGA+TGG | + | chr5.4:8653686-8653705 | MS.gene015286:CDS | 25.0% |
| !!! | TTCTATCCATTATTTGTTGT+TGG | - | chr5.4:8653679-8653698 | None:intergenic | 25.0% |
| AAAACTCATACCAACAAACA+TGG | + | chr5.4:8652500-8652519 | MS.gene015286:intron | 30.0% | |
| AAACTCATACCAACAAACAT+GGG | + | chr5.4:8652501-8652520 | MS.gene015286:intron | 30.0% | |
| AACCCTTGAAATATATGTGA+TGG | - | chr5.4:8653614-8653633 | None:intergenic | 30.0% | |
| AAGCCACCATGTTTAATATT+TGG | - | chr5.4:8652892-8652911 | None:intergenic | 30.0% | |
| AATAATGTCGTCTTCTTCTT+CGG | - | chr5.4:8652917-8652936 | None:intergenic | 30.0% | |
| AGAAATTCTAAGCGATCAAT+TGG | - | chr5.4:8653170-8653189 | None:intergenic | 30.0% | |
| AGACCAAATATTAAACATGG+TGG | + | chr5.4:8652886-8652905 | MS.gene015286:intron | 30.0% | |
| AGCCATCACATATATTTCAA+GGG | + | chr5.4:8653609-8653628 | MS.gene015286:CDS | 30.0% | |
| ATGAATTATTGTTGTGGATG+GGG | - | chr5.4:8652167-8652186 | None:intergenic | 30.0% | |
| ATTGAGATTCTAGACTAAGA+AGG | + | chr5.4:8652247-8652266 | MS.gene015286:intron | 30.0% | |
| CATCAACTCATAATAAAGGT+TGG | + | chr5.4:8652468-8652487 | MS.gene015286:intron | 30.0% | |
| GGACACAATTAGAAAAACAT+TGG | + | chr5.4:8652268-8652287 | MS.gene015286:intron | 30.0% | |
| GTATTACTTTCCATGGAAAA+AGG | - | chr5.4:8653563-8653582 | None:intergenic | 30.0% | |
| TACATAGAACAAAATGGTAC+TGG | + | chr5.4:8652600-8652619 | MS.gene015286:intron | 30.0% | |
| TATATATAAAGAAGAGTGGG+AGG | - | chr5.4:8652420-8652439 | None:intergenic | 30.0% | |
| TGTGAACCAACAACAAATAA+TGG | + | chr5.4:8653670-8653689 | MS.gene015286:CDS | 30.0% | |
| TTATTTGCAAGTAGATAGCT+TGG | - | chr5.4:8653107-8653126 | None:intergenic | 30.0% | |
| ! | AAGGGTTTGAAAATTTTCCA+AGG | + | chr5.4:8653627-8653646 | MS.gene015286:CDS | 30.0% |
| ! | AGGGTTTGAAAATTTTCCAA+GGG | + | chr5.4:8653628-8653647 | MS.gene015286:CDS | 30.0% |
| ! | TCTTTGGTTTATGACTATGA+AGG | + | chr5.4:8653800-8653819 | MS.gene015286:CDS | 30.0% |
| ! | TTGGTTTAGAAAAAGGTGTA+TGG | - | chr5.4:8652358-8652377 | None:intergenic | 30.0% |
| !! | AAATCAGAATTTGATGATGG+CGG | + | chr5.4:8653376-8653395 | MS.gene015286:CDS | 30.0% |
| AAATTTCTCTCTCTTTCTCC+AGG | + | chr5.4:8652376-8652395 | MS.gene015286:intron | 35.0% | |
| AATATAAGAGAGAGAGAGAG+AGG | + | chr5.4:8652209-8652228 | MS.gene015286:intron | 35.0% | |
| AGATGATGAACCTTTATGCA+TGG | - | chr5.4:8652139-8652158 | None:intergenic | 35.0% | |
| ATTATAGCAGCACAATTACC+AGG | + | chr5.4:8653215-8653234 | MS.gene015286:CDS | 35.0% | |
| ATTGGAAATGCCAGTGTAAT+AGG | - | chr5.4:8652294-8652313 | None:intergenic | 35.0% | |
| CAGCCATCACATATATTTCA+AGG | + | chr5.4:8653608-8653627 | MS.gene015286:CDS | 35.0% | |
| CTTGAAATATATGTGATGGC+TGG | - | chr5.4:8653610-8653629 | None:intergenic | 35.0% | |
| CTTGTTTCATGTTGCTAACT+CGG | - | chr5.4:8653340-8653359 | None:intergenic | 35.0% | |
| GAATCTATTGACATGAGCAA+TGG | + | chr5.4:8653722-8653741 | MS.gene015286:CDS | 35.0% | |
| GACAAAGCCAATGTCAAAAA+AGG | + | chr5.4:8652540-8652559 | MS.gene015286:intron | 35.0% | |
| GGAATGTTCATTATGCTTGT+TGG | - | chr5.4:8653536-8653555 | None:intergenic | 35.0% | |
| GTATTAGTTCAGCTCCTTAT+TGG | + | chr5.4:8653414-8653433 | MS.gene015286:CDS | 35.0% | |
| TAAAGAACTACTGGAACACT+AGG | + | chr5.4:8653255-8653274 | MS.gene015286:CDS | 35.0% | |
| TCAAAAGCAATAGCATCTTG+TGG | - | chr5.4:8653848-8653867 | None:intergenic | 35.0% | |
| TGGAGAAAGAGAGAGAAATT+TGG | - | chr5.4:8652377-8652396 | None:intergenic | 35.0% | |
| TTTAACCTTCCACTACCATT+TGG | + | chr5.4:8652097-8652116 | MS.gene015286:intron | 35.0% | |
| ! | AAAACATTGGCCTATTACAC+TGG | + | chr5.4:8652281-8652300 | MS.gene015286:intron | 35.0% |
| ! | ATAGAACAAAATGGTACTGG+TGG | + | chr5.4:8652603-8652622 | MS.gene015286:intron | 35.0% |
| ! | ATCTAGGACTTAAGAGATGT+GGG | + | chr5.4:8652830-8652849 | MS.gene015286:intron | 35.0% |
| ! | GATGAATTTGAAACTGGCAT+AGG | - | chr5.4:8653461-8653480 | None:intergenic | 35.0% |
| ! | TTGAGTTTTGCATCTTCTTC+AGG | - | chr5.4:8652576-8652595 | None:intergenic | 35.0% |
| ! | TTTGAGGAGTCTAGGTATTT+TGG | + | chr5.4:8653863-8653882 | MS.gene015286:CDS | 35.0% |
| !! | AAAATGGTACTGGTGGAAAT+TGG | + | chr5.4:8652610-8652629 | MS.gene015286:intron | 35.0% |
| !! | ACAAGATGCTATTGCTTTTG+AGG | + | chr5.4:8653847-8653866 | MS.gene015286:CDS | 35.0% |
| !! | TTCAACAGAAAGCACTAGTT+GGG | + | chr5.4:8653766-8653785 | MS.gene015286:CDS | 35.0% |
| ACAAGCTCACTTAAATCCCT+TGG | - | chr5.4:8653647-8653666 | None:intergenic | 40.0% | |
| ATATAAAGAAGAGTGGGAGG+AGG | - | chr5.4:8652417-8652436 | None:intergenic | 40.0% | |
| ATATCATTATCCGTTCGTCC+TGG | - | chr5.4:8653236-8653255 | None:intergenic | 40.0% | |
| ATTGCTCTACCTCAGAAGAT+AGG | + | chr5.4:8652633-8652652 | MS.gene015286:intron | 40.0% | |
| CAGAAGATAGGTATGCTACA+TGG | + | chr5.4:8652645-8652664 | MS.gene015286:intron | 40.0% | |
| CCAATGTCAAAAAAGGTCCA+TGG | + | chr5.4:8652547-8652566 | MS.gene015286:intron | 40.0% | |
| CTTGTGGAATTGATCCTTGT+TGG | - | chr5.4:8653832-8653851 | None:intergenic | 40.0% | |
| CTTTCCATGGAAAAAGGGTT+TGG | - | chr5.4:8653557-8653576 | None:intergenic | 40.0% | |
| TATAAAGAAGAGTGGGAGGA+GGG | - | chr5.4:8652416-8652435 | None:intergenic | 40.0% | |
| TATGAAGGTTGTTGCCAACA+AGG | + | chr5.4:8653815-8653834 | MS.gene015286:CDS | 40.0% | |
| TCTATTGACATGAGCAATGG+TGG | + | chr5.4:8653725-8653744 | MS.gene015286:CDS | 40.0% | |
| TGAACCTTTATGCATGGTGA+AGG | - | chr5.4:8652133-8652152 | None:intergenic | 40.0% | |
| TGTAGCATACCTATCTTCTG+AGG | - | chr5.4:8652645-8652664 | None:intergenic | 40.0% | |
| TTATTGTTGTGGATGGGGAA+TGG | - | chr5.4:8652162-8652181 | None:intergenic | 40.0% | |
| TTGCAAGTAGATAGCTTGGT+TGG | - | chr5.4:8653103-8653122 | None:intergenic | 40.0% | |
| TTGGGGAGATATGAACTCTT+TGG | + | chr5.4:8653784-8653803 | MS.gene015286:CDS | 40.0% | |
| TTTGTGGATGTGTGTGATCT+AGG | + | chr5.4:8652814-8652833 | MS.gene015286:intron | 40.0% | |
| ! | CATTCCAAACCCTTTTTCCA+TGG | + | chr5.4:8653550-8653569 | MS.gene015286:CDS | 40.0% |
| ! | GATCTAGGACTTAAGAGATG+TGG | + | chr5.4:8652829-8652848 | MS.gene015286:intron | 40.0% |
| !! | CTATTGCTTTTGAGGAGTCT+AGG | + | chr5.4:8653855-8653874 | MS.gene015286:CDS | 40.0% |
| !! | CTTCAACAGAAAGCACTAGT+TGG | + | chr5.4:8653765-8653784 | MS.gene015286:CDS | 40.0% |
| !! | TCAACAGAAAGCACTAGTTG+GGG | + | chr5.4:8653767-8653786 | MS.gene015286:CDS | 40.0% |
| !!! | CCATGGACCTTTTTTGACAT+TGG | - | chr5.4:8652550-8652569 | None:intergenic | 40.0% |
| AGAAGCTCCTTGGGAAACAA+AGG | + | chr5.4:8653285-8653304 | MS.gene015286:CDS | 45.0% | |
| AGCACAATTACCAGGACGAA+CGG | + | chr5.4:8653223-8653242 | MS.gene015286:CDS | 45.0% | |
| ATAAAGAAGAGTGGGAGGAG+GGG | - | chr5.4:8652415-8652434 | None:intergenic | 45.0% | |
| GAATACTCTGCAGGCCAATA+AGG | - | chr5.4:8653431-8653450 | None:intergenic | 45.0% | |
| GCTACCTTCACCATGCATAA+AGG | + | chr5.4:8652126-8652145 | MS.gene015286:intron | 45.0% | |
| GGAAAAGCTGTCGTCTTAGA+TGG | + | chr5.4:8652851-8652870 | MS.gene015286:intron | 45.0% | |
| GGATGAACAGAATACTCTGC+AGG | - | chr5.4:8653440-8653459 | None:intergenic | 45.0% | |
| TGCAGCCTCTATGTTAGCAT+CGG | + | chr5.4:8652937-8652956 | MS.gene015286:intron | 45.0% | |
| TGCTTCCGATGCTAACATAG+AGG | - | chr5.4:8652945-8652964 | None:intergenic | 45.0% | |
| TGGATGAAGCAAGCTTGTGA+AGG | - | chr5.4:8653516-8653535 | None:intergenic | 45.0% | |
| ! | TCTATGTTAGCATCGGAAGC+AGG | + | chr5.4:8652944-8652963 | MS.gene015286:intron | 45.0% |
| !! | AATTTGATGATGGCGGCTTC+GGG | + | chr5.4:8653383-8653402 | MS.gene015286:CDS | 45.0% |
| !! | ACATTGGCTTTGTCACAGCA+AGG | - | chr5.4:8652534-8652553 | None:intergenic | 45.0% |
| !! | GAATTTGATGATGGCGGCTT+CGG | + | chr5.4:8653382-8653401 | MS.gene015286:CDS | 45.0% |
| !!! | TAATTAATTAATAAGTTTTA+GGG | - | chr5.4:8653047-8653066 | None:intergenic | 5.0% |
| AGGCTGAAGAAGAAGCTCCT+TGG | + | chr5.4:8653275-8653294 | MS.gene015286:CDS | 50.0% | |
| AGGGGCAGAGAGAAATAACC+TGG | - | chr5.4:8652397-8652416 | None:intergenic | 50.0% | |
| ATGCATGGTGAAGGTAGCGT+GGG | - | chr5.4:8652124-8652143 | None:intergenic | 50.0% | |
| GCATCTTCTTCAGGTGACCA+TGG | - | chr5.4:8652567-8652586 | None:intergenic | 50.0% | |
| GCTCCTTGGGAAACAAAGGA+AGG | + | chr5.4:8653289-8653308 | MS.gene015286:CDS | 50.0% | |
| GGAGCTCTTCCCATGTTTGT+TGG | - | chr5.4:8652513-8652532 | None:intergenic | 50.0% | |
| GGCTGAAGAAGAAGCTCCTT+GGG | + | chr5.4:8653276-8653295 | MS.gene015286:CDS | 50.0% | |
| TATGCATGGTGAAGGTAGCG+TGG | - | chr5.4:8652125-8652144 | None:intergenic | 50.0% | |
| ! | GCTCCTTCCTTTGTTTCCCA+AGG | - | chr5.4:8653295-8653314 | None:intergenic | 50.0% |
| !! | TGGGACCAAATGGTAGTGGA+AGG | - | chr5.4:8652105-8652124 | None:intergenic | 50.0% |
| AGCGTGGGACCAAATGGTAG+TGG | - | chr5.4:8652109-8652128 | None:intergenic | 55.0% | |
| GAAGGTAGCGTGGGACCAAA+TGG | - | chr5.4:8652115-8652134 | None:intergenic | 55.0% | |
| ATGGCGGCTTCGGGTGTCAA+TGG | + | chr5.4:8653392-8653411 | MS.gene015286:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 8652082 | 8653901 | 8652082 | ID=MS.gene015286 |
| chr5.4 | mRNA | 8652082 | 8653901 | 8652082 | ID=MS.gene015286.t1;Parent=MS.gene015286 |
| chr5.4 | exon | 8652082 | 8652086 | 8652082 | ID=MS.gene015286.t1.exon1;Parent=MS.gene015286.t1 |
| chr5.4 | CDS | 8652082 | 8652086 | 8652082 | ID=cds.MS.gene015286.t1;Parent=MS.gene015286.t1 |
| chr5.4 | exon | 8653208 | 8653901 | 8653208 | ID=MS.gene015286.t1.exon2;Parent=MS.gene015286.t1 |
| chr5.4 | CDS | 8653208 | 8653901 | 8653208 | ID=cds.MS.gene015286.t1;Parent=MS.gene015286.t1 |
| Gene Sequence |
| Protein sequence |
