Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015304.t1 | XP_003611493.1 | 86.8 | 317 | 34 | 3 | 2 | 312 | 19 | 333 | 3.50E-137 | 498 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015304.t1 | Q9T072 | 38.1 | 318 | 178 | 9 | 6 | 307 | 11 | 325 | 3.0e-36 | 154.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015304.t1 | G7K125 | 86.8 | 317 | 34 | 3 | 2 | 312 | 19 | 333 | 2.5e-137 | 498.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene015304.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015304.t1 | MTR_5g014520 | 90.221 | 317 | 23 | 3 | 2 | 312 | 19 | 333 | 0.0 | 506 |
MS.gene015304.t1 | MTR_5g014560 | 69.551 | 312 | 71 | 6 | 2 | 312 | 19 | 307 | 5.70e-140 | 399 |
MS.gene015304.t1 | MTR_4g066460 | 45.886 | 316 | 127 | 11 | 15 | 303 | 22 | 320 | 2.66e-65 | 210 |
MS.gene015304.t1 | MTR_6g047570 | 45.122 | 328 | 126 | 14 | 15 | 306 | 21 | 330 | 5.26e-65 | 209 |
MS.gene015304.t1 | MTR_4g067010 | 44.194 | 310 | 133 | 9 | 15 | 303 | 22 | 312 | 1.31e-63 | 205 |
MS.gene015304.t1 | MTR_0246s0020 | 42.254 | 355 | 131 | 11 | 19 | 306 | 26 | 373 | 2.41e-63 | 206 |
MS.gene015304.t1 | MTR_0246s0050 | 43.506 | 308 | 132 | 8 | 26 | 306 | 23 | 315 | 3.96e-63 | 204 |
MS.gene015304.t1 | MTR_4g098035 | 43.831 | 308 | 131 | 8 | 26 | 306 | 44 | 336 | 8.21e-63 | 204 |
MS.gene015304.t1 | MTR_0011s0260 | 51.327 | 226 | 93 | 4 | 85 | 306 | 142 | 354 | 5.87e-61 | 199 |
MS.gene015304.t1 | MTR_4g066380 | 44.516 | 310 | 138 | 9 | 15 | 303 | 21 | 317 | 1.34e-60 | 197 |
MS.gene015304.t1 | MTR_0250s0040 | 53.052 | 213 | 84 | 7 | 95 | 303 | 56 | 256 | 4.39e-60 | 194 |
MS.gene015304.t1 | MTR_0011s0210 | 50.885 | 226 | 94 | 4 | 85 | 306 | 142 | 354 | 1.03e-59 | 196 |
MS.gene015304.t1 | MTR_2g010450 | 49.010 | 202 | 96 | 2 | 114 | 315 | 159 | 353 | 7.79e-57 | 189 |
MS.gene015304.t1 | MTR_0246s0020 | 41.667 | 336 | 122 | 11 | 19 | 287 | 26 | 354 | 1.13e-56 | 189 |
MS.gene015304.t1 | MTR_4g092700 | 51.309 | 191 | 88 | 2 | 117 | 305 | 141 | 328 | 5.12e-56 | 186 |
MS.gene015304.t1 | MTR_5g014600 | 51.131 | 221 | 79 | 7 | 106 | 305 | 120 | 332 | 1.10e-54 | 182 |
MS.gene015304.t1 | MTR_2g104550 | 45.148 | 237 | 111 | 6 | 79 | 305 | 82 | 309 | 2.34e-53 | 178 |
MS.gene015304.t1 | MTR_4g009540 | 44.681 | 235 | 112 | 5 | 79 | 305 | 104 | 328 | 2.73e-52 | 176 |
MS.gene015304.t1 | MTR_5g014550 | 69.919 | 123 | 36 | 1 | 164 | 286 | 54 | 175 | 6.51e-51 | 168 |
MS.gene015304.t1 | MTR_2g104490 | 40.594 | 303 | 145 | 11 | 25 | 314 | 33 | 313 | 7.97e-51 | 172 |
MS.gene015304.t1 | MTR_4g097950 | 47.347 | 245 | 112 | 8 | 71 | 303 | 6 | 245 | 8.15e-50 | 167 |
MS.gene015304.t1 | MTR_4g009110 | 43.426 | 251 | 121 | 6 | 68 | 305 | 105 | 347 | 8.65e-49 | 167 |
MS.gene015304.t1 | MTR_4g097940 | 40.357 | 280 | 152 | 7 | 34 | 305 | 51 | 323 | 1.13e-48 | 167 |
MS.gene015304.t1 | MTR_8g009020 | 41.631 | 233 | 125 | 3 | 79 | 303 | 89 | 318 | 6.39e-48 | 165 |
MS.gene015304.t1 | MTR_5g014640 | 36.786 | 280 | 145 | 6 | 51 | 303 | 45 | 319 | 2.13e-45 | 158 |
MS.gene015304.t1 | MTR_4g097920 | 38.214 | 280 | 158 | 7 | 34 | 305 | 36 | 308 | 2.65e-45 | 157 |
MS.gene015304.t1 | MTR_4g097920 | 38.214 | 280 | 158 | 7 | 34 | 305 | 51 | 323 | 2.85e-45 | 158 |
MS.gene015304.t1 | MTR_4g009540 | 42.857 | 217 | 106 | 5 | 79 | 287 | 104 | 310 | 2.27e-43 | 152 |
MS.gene015304.t1 | MTR_2g104490 | 39.130 | 276 | 134 | 10 | 25 | 287 | 33 | 287 | 1.44e-42 | 150 |
MS.gene015304.t1 | MTR_2g104560 | 44.199 | 181 | 90 | 4 | 127 | 303 | 47 | 220 | 7.75e-42 | 146 |
MS.gene015304.t1 | MTR_7g080780 | 44.324 | 185 | 93 | 1 | 119 | 303 | 137 | 311 | 7.49e-41 | 146 |
MS.gene015304.t1 | MTR_7g080780 | 44.324 | 185 | 93 | 1 | 119 | 303 | 150 | 324 | 9.37e-41 | 146 |
MS.gene015304.t1 | MTR_2g104650 | 42.347 | 196 | 108 | 4 | 117 | 308 | 75 | 269 | 1.84e-40 | 144 |
MS.gene015304.t1 | MTR_8g009010 | 39.091 | 220 | 85 | 5 | 127 | 343 | 127 | 300 | 4.88e-38 | 138 |
MS.gene015304.t1 | MTR_7g451650 | 48.980 | 147 | 64 | 1 | 157 | 303 | 57 | 192 | 2.65e-37 | 133 |
MS.gene015304.t1 | MTR_8g069740 | 43.860 | 171 | 91 | 4 | 120 | 286 | 96 | 265 | 4.34e-37 | 134 |
MS.gene015304.t1 | MTR_2g104590 | 42.487 | 193 | 74 | 5 | 127 | 310 | 62 | 226 | 1.56e-36 | 132 |
MS.gene015304.t1 | MTR_4g009510 | 45.349 | 172 | 81 | 4 | 137 | 307 | 45 | 204 | 1.76e-36 | 131 |
MS.gene015304.t1 | MTR_2g104500 | 40.323 | 186 | 104 | 3 | 118 | 303 | 89 | 267 | 1.48e-35 | 130 |
MS.gene015304.t1 | MTR_7g050350 | 48.227 | 141 | 62 | 1 | 163 | 303 | 1 | 130 | 1.33e-34 | 124 |
MS.gene015304.t1 | MTR_7g451650 | 48.227 | 141 | 62 | 1 | 163 | 303 | 1 | 130 | 1.33e-34 | 124 |
MS.gene015304.t1 | MTR_4g009420 | 49.660 | 147 | 55 | 2 | 157 | 303 | 65 | 192 | 1.54e-34 | 125 |
MS.gene015304.t1 | MTR_2g104530 | 40.376 | 213 | 102 | 6 | 102 | 303 | 71 | 269 | 5.10e-34 | 127 |
MS.gene015304.t1 | MTR_7g451650 | 47.407 | 135 | 60 | 1 | 157 | 291 | 57 | 180 | 4.79e-31 | 116 |
MS.gene015304.t1 | MTR_4g009420 | 48.148 | 135 | 51 | 2 | 157 | 291 | 65 | 180 | 4.68e-28 | 108 |
MS.gene015304.t1 | MTR_6g047550 | 39.316 | 234 | 96 | 10 | 4 | 202 | 18 | 240 | 5.02e-27 | 108 |
MS.gene015304.t1 | MTR_1g072320 | 31.447 | 159 | 101 | 2 | 117 | 268 | 454 | 611 | 2.19e-19 | 89.7 |
MS.gene015304.t1 | MTR_7g117670 | 29.940 | 167 | 105 | 3 | 134 | 299 | 402 | 557 | 6.35e-16 | 79.3 |
MS.gene015304.t1 | MTR_8g067280 | 35.570 | 149 | 84 | 4 | 134 | 271 | 462 | 609 | 2.77e-15 | 77.4 |
MS.gene015304.t1 | MTR_8g027495 | 28.313 | 166 | 109 | 3 | 134 | 299 | 458 | 613 | 2.84e-15 | 77.4 |
MS.gene015304.t1 | MTR_5g030430 | 30.337 | 178 | 93 | 5 | 134 | 291 | 493 | 659 | 1.58e-14 | 75.1 |
MS.gene015304.t1 | MTR_1g112680 | 32.020 | 203 | 118 | 9 | 29 | 214 | 201 | 400 | 5.77e-14 | 73.2 |
MS.gene015304.t1 | MTR_3g030700 | 30.168 | 179 | 113 | 4 | 116 | 286 | 178 | 352 | 1.25e-13 | 71.6 |
MS.gene015304.t1 | MTR_8g064700 | 27.368 | 190 | 110 | 5 | 107 | 284 | 225 | 398 | 1.35e-13 | 71.6 |
MS.gene015304.t1 | MTR_8g024770 | 30.973 | 113 | 75 | 1 | 134 | 243 | 279 | 391 | 8.99e-13 | 69.3 |
MS.gene015304.t1 | MTR_5g064950 | 27.374 | 179 | 113 | 5 | 135 | 297 | 102 | 279 | 1.69e-12 | 67.8 |
MS.gene015304.t1 | MTR_8g024790 | 25.234 | 214 | 147 | 5 | 95 | 302 | 256 | 462 | 3.24e-12 | 67.8 |
MS.gene015304.t1 | MTR_5g064950 | 27.950 | 161 | 100 | 4 | 135 | 279 | 102 | 262 | 3.91e-12 | 66.6 |
MS.gene015304.t1 | MTR_7g096350 | 46.269 | 67 | 35 | 1 | 134 | 199 | 355 | 421 | 7.40e-12 | 66.6 |
MS.gene015304.t1 | MTR_8g098275 | 24.413 | 213 | 130 | 4 | 123 | 307 | 390 | 599 | 1.23e-11 | 66.2 |
MS.gene015304.t1 | MTR_8g098275 | 24.413 | 213 | 130 | 4 | 123 | 307 | 297 | 506 | 2.18e-11 | 65.5 |
MS.gene015304.t1 | MTR_8g098275 | 24.413 | 213 | 130 | 4 | 123 | 307 | 233 | 442 | 2.44e-11 | 65.1 |
MS.gene015304.t1 | MTR_0194s0050 | 23.980 | 196 | 126 | 5 | 135 | 308 | 186 | 380 | 3.12e-11 | 64.3 |
MS.gene015304.t1 | MTR_3g498695 | 27.419 | 186 | 124 | 4 | 117 | 293 | 283 | 466 | 6.14e-11 | 63.9 |
MS.gene015304.t1 | MTR_3g104100 | 28.488 | 172 | 106 | 4 | 136 | 294 | 197 | 364 | 6.40e-11 | 63.5 |
MS.gene015304.t1 | MTR_7g083900 | 29.240 | 171 | 108 | 5 | 135 | 293 | 287 | 456 | 7.63e-11 | 63.5 |
MS.gene015304.t1 | MTR_2g084280 | 33.094 | 139 | 85 | 4 | 136 | 272 | 135 | 267 | 8.03e-11 | 62.8 |
MS.gene015304.t1 | MTR_7g110810 | 44.156 | 77 | 42 | 1 | 111 | 186 | 188 | 264 | 9.78e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015304.t1 | AT4G37850 | 44.269 | 253 | 126 | 7 | 67 | 307 | 76 | 325 | 1.79e-52 | 177 |
MS.gene015304.t1 | AT4G37850 | 44.269 | 253 | 126 | 7 | 67 | 307 | 76 | 325 | 1.79e-52 | 177 |
MS.gene015304.t1 | AT2G22760 | 44.221 | 199 | 88 | 5 | 122 | 303 | 99 | 291 | 2.16e-44 | 154 |
MS.gene015304.t1 | AT2G22750 | 44.033 | 243 | 117 | 7 | 72 | 302 | 86 | 321 | 1.97e-43 | 153 |
MS.gene015304.t1 | AT2G22750 | 44.033 | 243 | 117 | 7 | 72 | 302 | 62 | 297 | 2.12e-43 | 152 |
MS.gene015304.t1 | AT2G22750 | 44.033 | 243 | 117 | 7 | 72 | 302 | 90 | 325 | 2.19e-43 | 153 |
MS.gene015304.t1 | AT2G22750 | 44.033 | 243 | 116 | 8 | 72 | 302 | 90 | 324 | 5.63e-42 | 149 |
MS.gene015304.t1 | AT2G22750 | 44.033 | 243 | 116 | 8 | 72 | 302 | 62 | 296 | 6.65e-42 | 148 |
MS.gene015304.t1 | AT2G22760 | 45.055 | 182 | 78 | 4 | 122 | 287 | 99 | 274 | 3.34e-41 | 146 |
MS.gene015304.t1 | AT2G22770 | 36.102 | 313 | 154 | 9 | 26 | 303 | 14 | 315 | 4.80e-40 | 144 |
MS.gene015304.t1 | AT4G09820 | 32.812 | 128 | 65 | 1 | 135 | 262 | 364 | 470 | 9.50e-16 | 78.6 |
MS.gene015304.t1 | AT4G17880 | 31.250 | 160 | 104 | 3 | 134 | 291 | 416 | 571 | 1.41e-15 | 78.2 |
MS.gene015304.t1 | AT2G46510 | 32.331 | 133 | 69 | 3 | 113 | 243 | 372 | 485 | 3.53e-15 | 77.0 |
MS.gene015304.t1 | AT1G32640 | 31.469 | 143 | 91 | 1 | 134 | 269 | 452 | 594 | 6.32e-15 | 76.3 |
MS.gene015304.t1 | AT5G46760 | 30.769 | 169 | 97 | 4 | 134 | 291 | 415 | 574 | 1.05e-14 | 75.5 |
MS.gene015304.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 134 | 268 | 128 | 263 | 1.06e-14 | 74.3 |
MS.gene015304.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 134 | 268 | 179 | 314 | 1.29e-14 | 74.3 |
MS.gene015304.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 134 | 268 | 128 | 263 | 2.07e-14 | 73.6 |
MS.gene015304.t1 | AT2G16910 | 32.258 | 155 | 84 | 4 | 135 | 268 | 315 | 469 | 2.14e-14 | 74.7 |
MS.gene015304.t1 | AT3G61950 | 33.333 | 138 | 87 | 3 | 134 | 268 | 179 | 314 | 2.57e-14 | 73.6 |
MS.gene015304.t1 | AT1G01260 | 27.711 | 166 | 97 | 2 | 119 | 284 | 418 | 560 | 3.90e-14 | 73.9 |
MS.gene015304.t1 | AT1G01260 | 27.711 | 166 | 97 | 2 | 119 | 284 | 418 | 560 | 3.90e-14 | 73.9 |
MS.gene015304.t1 | AT1G01260 | 27.711 | 166 | 97 | 2 | 119 | 284 | 418 | 560 | 3.90e-14 | 73.9 |
MS.gene015304.t1 | AT1G63650 | 28.824 | 170 | 97 | 5 | 134 | 283 | 405 | 570 | 9.43e-13 | 69.7 |
MS.gene015304.t1 | AT1G63650 | 28.824 | 170 | 97 | 5 | 134 | 283 | 405 | 570 | 9.43e-13 | 69.7 |
MS.gene015304.t1 | AT1G63650 | 28.824 | 170 | 97 | 5 | 134 | 283 | 405 | 570 | 9.43e-13 | 69.7 |
MS.gene015304.t1 | AT2G28160 | 28.144 | 167 | 99 | 3 | 117 | 272 | 114 | 270 | 1.30e-12 | 68.2 |
MS.gene015304.t1 | AT2G28160 | 28.144 | 167 | 99 | 3 | 117 | 272 | 114 | 270 | 1.58e-12 | 67.8 |
MS.gene015304.t1 | AT4G30980 | 28.177 | 181 | 111 | 3 | 83 | 253 | 82 | 253 | 3.17e-12 | 67.0 |
MS.gene015304.t1 | AT4G16430 | 50.000 | 58 | 29 | 0 | 134 | 191 | 320 | 377 | 4.51e-12 | 67.4 |
MS.gene015304.t1 | AT5G41315 | 28.736 | 174 | 97 | 6 | 134 | 283 | 449 | 619 | 5.32e-12 | 67.4 |
MS.gene015304.t1 | AT5G41315 | 28.736 | 174 | 97 | 6 | 134 | 283 | 446 | 616 | 5.40e-12 | 67.4 |
MS.gene015304.t1 | AT5G41315 | 28.736 | 174 | 97 | 6 | 134 | 283 | 441 | 611 | 5.52e-12 | 67.4 |
MS.gene015304.t1 | AT4G30980 | 28.177 | 181 | 111 | 3 | 83 | 253 | 130 | 301 | 7.71e-12 | 66.2 |
MS.gene015304.t1 | AT1G12860 | 31.818 | 154 | 96 | 4 | 135 | 281 | 268 | 419 | 8.49e-12 | 66.2 |
MS.gene015304.t1 | AT1G12860 | 31.818 | 154 | 96 | 4 | 135 | 281 | 268 | 419 | 1.23e-11 | 65.9 |
MS.gene015304.t1 | AT2G46810 | 26.203 | 187 | 118 | 3 | 135 | 311 | 123 | 299 | 3.24e-11 | 64.3 |
MS.gene015304.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 135 | 284 | 56 | 213 | 4.58e-11 | 62.4 |
MS.gene015304.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 135 | 284 | 55 | 212 | 4.64e-11 | 62.4 |
MS.gene015304.t1 | AT1G72210 | 28.713 | 202 | 112 | 8 | 135 | 312 | 127 | 320 | 5.20e-11 | 63.5 |
MS.gene015304.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 135 | 284 | 56 | 213 | 5.75e-11 | 62.0 |
MS.gene015304.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 135 | 284 | 56 | 213 | 6.87e-11 | 62.4 |
MS.gene015304.t1 | AT5G57150 | 26.220 | 164 | 101 | 4 | 135 | 284 | 55 | 212 | 8.14e-11 | 62.0 |
Find 61 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATCCTTTAGAAAAGAATT+TGG | 0.226485 | 5.4:+8332799 | MS.gene015304:CDS |
CTAATACCCTCAAACGTTCT+TGG | 0.234491 | 5.4:-8335635 | None:intergenic |
AATAACAGTGTCCTACCTTT+TGG | 0.259096 | 5.4:+8335900 | MS.gene015304:CDS |
GCTCTAGCTGCTCTTATTCC+TGG | 0.270587 | 5.4:+8333082 | MS.gene015304:CDS |
TCTTTCTCTCTGCTATGATA+TGG | 0.318056 | 5.4:-8333030 | None:intergenic |
GTTCCAGCTATTGGAAGAAA+TGG | 0.343234 | 5.4:+8332628 | MS.gene015304:intron |
CACATCCTTGTCCAAAACTT+TGG | 0.362806 | 5.4:-8335793 | None:intergenic |
GGACGTGGTGGGTTGTGTTT+CGG | 0.364752 | 5.4:+8340079 | MS.gene015304:CDS |
TTCTCGCCGGCGACTTTACA+TGG | 0.370147 | 5.4:+8340057 | MS.gene015304:CDS |
TAATAGTCATGTTCAGTCTA+TGG | 0.373573 | 5.4:+8335674 | MS.gene015304:CDS |
ACATGTAGAAGCCAAAGTTT+TGG | 0.403189 | 5.4:+8335782 | MS.gene015304:CDS |
GGTAATTGTGTTTGTGAGAA+TGG | 0.404374 | 5.4:-8332911 | None:intergenic |
GAGGTCTGTGGCTCATAATC+AGG | 0.412438 | 5.4:+8333006 | MS.gene015304:CDS |
GAGAACGTCGGAGGAGGGTT+AGG | 0.416223 | 5.4:-8340039 | None:intergenic |
CAACGTGAACAAAACTTGTA+TGG | 0.426153 | 5.4:+8332677 | MS.gene015304:CDS |
TGGACAAGGATGTGCTCATA+AGG | 0.429386 | 5.4:+8335802 | MS.gene015304:CDS |
ATTGGAAGAAATGGAAATAG+AGG | 0.434159 | 5.4:+8332637 | MS.gene015304:CDS |
ATGGACAAGGCTTCAGTCCT+AGG | 0.441208 | 5.4:+8335585 | MS.gene015304:CDS |
GTTGTGTTTCGGTTTCTTGA+CGG | 0.451196 | 5.4:+8340090 | MS.gene015304:CDS |
AAGATAACAAAGGTTGATGT+TGG | 0.458857 | 5.4:-8332757 | None:intergenic |
TGATATAACCATCGTTGCTC+AGG | 0.464649 | 5.4:+8335935 | MS.gene015304:CDS |
GATCCACTGCCAAAAGCAAA+AGG | 0.466058 | 5.4:+8335824 | MS.gene015304:CDS |
CAATTACCTCGAAATAGAAA+AGG | 0.474445 | 5.4:+8332926 | MS.gene015304:CDS |
GCCGGCGAGAACGTCGGAGG+AGG | 0.486200 | 5.4:-8340045 | None:intergenic |
GTCGGAGGAGGGTTAGGAAA+TGG | 0.492692 | 5.4:-8340033 | None:intergenic |
TCTTATTCCTGGCTTGAAGA+AGG | 0.494711 | 5.4:+8333093 | MS.gene015304:CDS |
ATTATGAGCCACAGACCTCT+TGG | 0.506300 | 5.4:-8333002 | None:intergenic |
CCATATACCTTCTTCAAGCC+AGG | 0.514414 | 5.4:-8333100 | None:intergenic |
CGTACTTGATTGCATCTCCT+AGG | 0.518134 | 5.4:-8335602 | None:intergenic |
AAGAGCTCCAAGAACGTTTG+AGG | 0.518931 | 5.4:+8335628 | MS.gene015304:CDS |
GACTTTACATGGGACGTGGT+GGG | 0.547942 | 5.4:+8340068 | MS.gene015304:CDS |
AAAACTTTGGCTTCTACATG+TGG | 0.548591 | 5.4:-8335780 | None:intergenic |
AATTACCTCGAAATAGAAAA+GGG | 0.550335 | 5.4:+8332927 | MS.gene015304:CDS |
GAGCAACGATGGTTATATCA+AGG | 0.552186 | 5.4:-8335932 | None:intergenic |
CGACTTTACATGGGACGTGG+TGG | 0.562110 | 5.4:+8340067 | MS.gene015304:CDS |
CCCTCCTCCGACGTTCTCGC+CGG | 0.563566 | 5.4:+8340044 | MS.gene015304:CDS |
AGAGCTCCAAGAACGTTTGA+GGG | 0.570082 | 5.4:+8335629 | MS.gene015304:CDS |
CCGGCGAGAACGTCGGAGGA+GGG | 0.574137 | 5.4:-8340044 | None:intergenic |
CGGCGACTTTACATGGGACG+TGG | 0.574768 | 5.4:+8340064 | MS.gene015304:CDS |
TCAAGGATAGAATCCCCAAA+AGG | 0.575129 | 5.4:-8335915 | None:intergenic |
ATCCACTGCCAAAAGCAAAA+GGG | 0.579077 | 5.4:+8335825 | MS.gene015304:CDS |
ACAACATTGTACGAGAAGAA+AGG | 0.579497 | 5.4:-8340000 | None:intergenic |
GATGAGTCAGAACTTAGTTG+TGG | 0.581816 | 5.4:-8335711 | None:intergenic |
CACGTCCCATGTAAAGTCGC+CGG | 0.582380 | 5.4:-8340063 | None:intergenic |
TTTATTTACCTGAGCAACGA+TGG | 0.591261 | 5.4:-8335943 | None:intergenic |
ACTACAAAGTCACAAGGACA+AGG | 0.603785 | 5.4:+8332977 | MS.gene015304:CDS |
GGATAGAATCCCCAAAAGGT+AGG | 0.609941 | 5.4:-8335911 | None:intergenic |
TCATGTTCAGTCTATGGTGA+CGG | 0.614450 | 5.4:+8335680 | MS.gene015304:CDS |
TCTCGCCGGCGACTTTACAT+GGG | 0.621088 | 5.4:+8340058 | MS.gene015304:CDS |
GGAGGGTTAGGAAATGGTCT+CGG | 0.626341 | 5.4:-8340027 | None:intergenic |
AAACTTTGGCTTCTACATGT+GGG | 0.634166 | 5.4:-8335779 | None:intergenic |
TTGGAAGAAATGGAAATAGA+GGG | 0.635754 | 5.4:+8332638 | MS.gene015304:CDS |
TAGCTTTCAGAAGATAACAA+AGG | 0.638184 | 5.4:-8332767 | None:intergenic |
GTCGCCGGCGAGAACGTCGG+AGG | 0.640985 | 5.4:-8340048 | None:intergenic |
CACAAGGACAAGGGACCAAG+AGG | 0.647237 | 5.4:+8332987 | MS.gene015304:CDS |
ACAAGGGACCAAGAGGTCTG+TGG | 0.659567 | 5.4:+8332994 | MS.gene015304:CDS |
GATGATTCTGAAGCTGCTAG+TGG | 0.660614 | 5.4:+8335741 | MS.gene015304:CDS |
AAAGTCGCCGGCGAGAACGT+CGG | 0.674579 | 5.4:-8340051 | None:intergenic |
CTACAAAGTCACAAGGACAA+GGG | 0.698526 | 5.4:+8332978 | MS.gene015304:CDS |
GTTGAAACTACAAAGTCACA+AGG | 0.718556 | 5.4:+8332971 | MS.gene015304:CDS |
GGGTTAGGAAATGGTCTCGG+CGG | 0.724025 | 5.4:-8340024 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 8325348 | 8340122 | 8325348 | ID=MS.gene015304 |
chr5.4 | mRNA | 8325348 | 8340122 | 8325348 | ID=MS.gene015304.t1;Parent=MS.gene015304 |
chr5.4 | exon | 8325348 | 8325353 | 8325348 | ID=MS.gene015304.t1.exon1;Parent=MS.gene015304.t1 |
chr5.4 | CDS | 8325348 | 8325353 | 8325348 | ID=cds.MS.gene015304.t1;Parent=MS.gene015304.t1 |
chr5.4 | exon | 8332635 | 8333114 | 8332635 | ID=MS.gene015304.t1.exon2;Parent=MS.gene015304.t1 |
chr5.4 | CDS | 8332635 | 8333114 | 8332635 | ID=cds.MS.gene015304.t1;Parent=MS.gene015304.t1 |
chr5.4 | exon | 8335585 | 8335956 | 8335585 | ID=MS.gene015304.t1.exon3;Parent=MS.gene015304.t1 |
chr5.4 | CDS | 8335585 | 8335956 | 8335585 | ID=cds.MS.gene015304.t1;Parent=MS.gene015304.t1 |
chr5.4 | exon | 8337924 | 8337972 | 8337924 | ID=MS.gene015304.t1.exon4;Parent=MS.gene015304.t1 |
chr5.4 | CDS | 8337924 | 8337972 | 8337924 | ID=cds.MS.gene015304.t1;Parent=MS.gene015304.t1 |
chr5.4 | exon | 8339971 | 8340122 | 8339971 | ID=MS.gene015304.t1.exon5;Parent=MS.gene015304.t1 |
chr5.4 | CDS | 8339971 | 8340122 | 8339971 | ID=cds.MS.gene015304.t1;Parent=MS.gene015304.t1 |
Gene Sequence |
Protein sequence |