AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015315

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015315.t1 MTR_5g014300 96.119 335 13 0 1 335 1 335 0.0 674
MS.gene015315.t1 MTR_4g098630 60.290 345 100 9 1 335 1 318 9.15e-132 378
MS.gene015315.t1 MTR_6g477900 62.500 176 56 2 1 173 1 169 3.99e-74 229
MS.gene015315.t1 MTR_3g064580 64.024 164 48 2 1 160 1 157 5.84e-70 230
MS.gene015315.t1 MTR_5g076850 63.804 163 49 2 1 160 1 156 9.78e-67 221
MS.gene015315.t1 MTR_2g064090 46.930 228 102 3 1 216 1 221 1.03e-66 213
MS.gene015315.t1 MTR_3g093040 52.761 163 67 2 5 164 107 262 2.50e-53 178
MS.gene015315.t1 MTR_3g093050 53.529 170 69 3 5 171 21 183 6.69e-53 183
MS.gene015315.t1 MTR_3g093050 53.529 170 69 3 5 171 21 183 1.27e-52 183
MS.gene015315.t1 MTR_5g069030 53.704 162 65 3 6 164 25 179 1.78e-52 183
MS.gene015315.t1 MTR_1g097300 55.769 156 59 2 8 160 21 169 2.29e-52 181
MS.gene015315.t1 MTR_2g079990 51.190 168 68 4 1 164 11 168 2.95e-51 174
MS.gene015315.t1 MTR_2g062730 50.307 163 69 4 2 160 6 160 1.10e-50 172
MS.gene015315.t1 MTR_4g036030 49.057 159 72 3 4 160 5 156 1.37e-50 172
MS.gene015315.t1 MTR_7g085220 47.059 170 79 4 4 164 6 173 1.54e-50 171
MS.gene015315.t1 MTR_8g094580 48.588 177 71 4 2 168 3 169 1.85e-50 169
MS.gene015315.t1 MTR_4g101680 49.686 159 71 3 4 160 5 156 2.22e-50 171
MS.gene015315.t1 MTR_3g096920 51.190 168 66 4 2 163 3 160 3.55e-50 169
MS.gene015315.t1 MTR_2g086880 47.059 187 75 4 1 187 13 175 5.71e-50 174
MS.gene015315.t1 MTR_2g086880 47.059 187 75 4 1 187 13 175 9.77e-50 175
MS.gene015315.t1 MTR_8g059170 52.469 162 63 3 5 161 13 165 1.05e-49 169
MS.gene015315.t1 MTR_4g035590 51.266 158 69 2 4 160 6 156 1.16e-49 169
MS.gene015315.t1 MTR_5g021710 50.314 159 66 4 6 160 8 157 1.27e-49 169
MS.gene015315.t1 MTR_5g012080 47.500 160 75 3 4 160 5 158 1.34e-49 169
MS.gene015315.t1 MTR_3g096920 52.866 157 63 3 2 157 3 149 1.37e-49 169
MS.gene015315.t1 MTR_1g090723 52.564 156 64 3 8 160 10 158 1.39e-49 174
MS.gene015315.t1 MTR_2g080010 48.824 170 66 5 5 160 14 176 1.39e-49 169
MS.gene015315.t1 MTR_1g090723 52.564 156 64 3 8 160 10 158 1.63e-49 175
MS.gene015315.t1 MTR_4g108760 44.560 193 84 4 6 193 17 191 2.07e-49 169
MS.gene015315.t1 MTR_1g096430 49.686 159 67 4 6 160 7 156 2.75e-49 168
MS.gene015315.t1 MTR_2g078700 50.898 167 70 3 4 165 21 180 3.06e-49 169
MS.gene015315.t1 MTR_8g076110 50.303 165 69 5 1 161 1 156 3.13e-49 167
MS.gene015315.t1 MTR_3g096140 47.368 171 80 3 6 173 7 170 6.17e-49 165
MS.gene015315.t1 MTR_8g063550 45.405 185 91 2 1 182 1 178 6.67e-49 167
MS.gene015315.t1 MTR_3g435150 46.237 186 84 4 6 184 16 192 1.37e-48 165
MS.gene015315.t1 MTR_8g063550 45.405 185 91 2 1 182 1 178 1.82e-48 168
MS.gene015315.t1 MTR_1g090723 51.592 157 65 3 8 160 10 159 3.00e-48 171
MS.gene015315.t1 MTR_8g063550 45.405 185 91 2 1 182 1 178 3.14e-48 168
MS.gene015315.t1 MTR_1g090720 54.167 168 59 3 4 161 40 199 3.19e-48 169
MS.gene015315.t1 MTR_4g134460 50.649 154 67 3 8 160 56 201 3.52e-48 167
MS.gene015315.t1 MTR_4g081870 40.426 235 107 6 2 215 5 227 3.55e-48 163
MS.gene015315.t1 MTR_4g089135 54.348 138 56 2 6 143 15 145 3.69e-48 165
MS.gene015315.t1 MTR_6g011860 47.904 167 67 4 6 160 15 173 4.88e-48 166
MS.gene015315.t1 MTR_3g096140 46.857 175 83 3 8 179 9 176 5.43e-48 165
MS.gene015315.t1 MTR_3g088110 52.174 161 61 5 6 160 7 157 5.87e-48 163
MS.gene015315.t1 MTR_2g079990 54.225 142 56 2 1 142 11 143 8.17e-48 165
MS.gene015315.t1 MTR_6g084430 49.045 157 70 3 5 160 4 151 9.88e-48 164
MS.gene015315.t1 MTR_0036s0150 50.318 157 68 3 8 161 7 156 1.47e-47 168
MS.gene015315.t1 MTR_8g024480 44.211 190 80 5 2 174 11 191 3.57e-47 165
MS.gene015315.t1 MTR_6g012670 50.625 160 65 3 6 160 20 170 4.58e-47 162
MS.gene015315.t1 MTR_5g041940 39.914 233 109 5 6 216 3 226 9.58e-47 159
MS.gene015315.t1 MTR_2157s0010 47.024 168 71 4 6 161 8 169 2.62e-46 158
MS.gene015315.t1 MTR_1g008740 46.591 176 84 5 5 177 12 180 4.06e-46 160
MS.gene015315.t1 MTR_8g467490 46.108 167 67 4 8 160 16 173 5.82e-46 160
MS.gene015315.t1 MTR_1g008740 46.591 176 84 5 5 177 26 194 7.39e-46 160
MS.gene015315.t1 MTR_7g005280 44.809 183 89 4 2 182 11 183 7.56e-46 157
MS.gene015315.t1 MTR_3g109340 45.946 185 84 5 5 188 21 190 8.05e-46 159
MS.gene015315.t1 MTR_1g069805 48.795 166 77 4 3 168 7 164 9.10e-46 157
MS.gene015315.t1 MTR_3g109340 45.699 186 84 5 5 188 21 191 1.31e-45 159
MS.gene015315.t1 MTR_8g093580 43.784 185 94 3 1 182 1 178 1.91e-45 161
MS.gene015315.t1 MTR_5g040420 47.024 168 67 5 6 160 14 172 2.03e-45 159
MS.gene015315.t1 MTR_3g070030 47.826 161 69 3 6 160 19 170 2.55e-45 158
MS.gene015315.t1 MTR_7g100990 39.344 244 117 9 6 241 11 231 8.00e-45 156
MS.gene015315.t1 MTR_7g097090 51.613 155 67 4 3 157 7 153 1.39e-44 154
MS.gene015315.t1 MTR_7g085260 50.676 148 60 3 6 153 17 151 1.57e-44 157
MS.gene015315.t1 MTR_2g093810 46.061 165 71 4 5 160 13 168 1.69e-44 155
MS.gene015315.t1 MTR_6g032770 52.206 136 58 2 6 141 18 146 4.11e-44 155
MS.gene015315.t1 MTR_3g116070 54.745 137 54 3 6 141 23 152 7.22e-43 152
MS.gene015315.t1 MTR_4g075980 39.048 210 120 3 8 217 17 218 2.50e-42 149
MS.gene015315.t1 MTR_2g064470 46.429 168 75 4 1 164 6 162 2.78e-41 146
MS.gene015315.t1 MTR_8g023840 48.701 154 70 4 6 158 11 156 2.92e-41 148
MS.gene015315.t1 MTR_7g011130 52.273 132 54 2 9 140 22 144 1.41e-40 145
MS.gene015315.t1 MTR_2g068920 42.262 168 79 3 8 161 23 186 3.00e-40 143
MS.gene015315.t1 MTR_7g011120 51.515 132 55 2 9 140 11 133 3.91e-40 143
MS.gene015315.t1 MTR_5g090970 42.262 168 73 4 8 160 20 178 1.32e-39 142
MS.gene015315.t1 MTR_2g068880 42.857 175 81 6 2 161 17 187 1.56e-39 142
MS.gene015315.t1 MTR_3g096140 44.099 161 80 3 22 179 2 155 7.17e-39 140
MS.gene015315.t1 MTR_5g090970 42.262 168 72 4 8 160 20 177 7.84e-39 140
MS.gene015315.t1 MTR_8g023900 43.636 165 86 3 6 169 12 170 3.41e-37 139
MS.gene015315.t1 MTR_8g023900 42.941 170 83 5 5 168 187 348 1.48e-35 134
MS.gene015315.t1 MTR_8g099750 43.293 164 76 4 2 157 10 164 3.97e-37 133
MS.gene015315.t1 MTR_8g023860 44.156 154 77 4 6 158 12 157 1.14e-36 137
MS.gene015315.t1 MTR_8g023930 42.073 164 86 4 6 168 24 179 9.75e-36 135
MS.gene015315.t1 MTR_3g070040 41.279 172 82 4 10 174 12 171 1.90e-35 131
MS.gene015315.t1 MTR_3g098810 42.373 177 85 5 2 169 10 178 1.54e-34 127
MS.gene015315.t1 MTR_2g086690 44.172 163 71 6 7 157 5 159 3.11e-34 126
MS.gene015315.t1 MTR_7g105170 42.690 171 78 7 5 162 3 166 4.43e-34 126
MS.gene015315.t1 MTR_3g098810 47.482 139 66 2 2 140 10 141 9.37e-34 122
MS.gene015315.t1 MTR_4g052620 42.236 161 78 5 6 157 5 159 2.22e-32 121
MS.gene015315.t1 MTR_8g023880 33.333 231 127 6 4 219 5 223 2.81e-30 116
MS.gene015315.t1 MTR_4g094302 35.838 173 87 4 6 169 11 168 7.56e-29 110
MS.gene015315.t1 MTR_4g094302 40.000 135 66 3 6 140 11 130 2.68e-27 105
MS.gene015315.t1 MTR_8g094580 47.414 116 43 3 63 168 8 115 6.41e-27 106
MS.gene015315.t1 MTR_7g070140 44.444 90 45 1 56 145 12 96 4.39e-21 88.2
MS.gene015315.t1 MTR_8g093790 31.527 203 104 9 1 200 2 172 1.07e-17 80.1
MS.gene015315.t1 MTR_7g083330 28.902 173 98 6 3 164 15 173 9.02e-14 69.3
MS.gene015315.t1 MTR_3g096400 27.778 180 102 4 4 169 5 170 2.23e-13 68.6
MS.gene015315.t1 MTR_4g078875 30.357 168 91 8 6 157 48 205 3.48e-12 66.2
MS.gene015315.t1 MTR_1g087190 56.522 46 19 1 8 52 7 52 2.22e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015315.t1 AT4G17980 52.632 323 108 10 1 315 1 286 4.36e-98 292
MS.gene015315.t1 AT4G17980 57.778 270 79 7 1 264 1 241 4.65e-97 288
MS.gene015315.t1 AT5G46590 54.982 271 92 7 1 266 1 246 5.79e-93 279
MS.gene015315.t1 AT1G32510 65.534 206 62 4 1 202 1 201 1.34e-86 262
MS.gene015315.t1 AT5G46590 53.731 268 89 7 1 266 1 235 1.80e-86 262
MS.gene015315.t1 AT1G65910 64.162 173 52 2 1 170 1 166 2.51e-71 233
MS.gene015315.t1 AT5G17260 46.809 282 119 7 1 267 1 266 2.68e-70 226
MS.gene015315.t1 AT1G54330 65.217 161 49 1 1 161 1 154 1.83e-69 219
MS.gene015315.t1 AT3G17730 63.030 165 49 3 1 161 1 157 4.38e-69 216
MS.gene015315.t1 AT3G03200 65.244 164 46 3 1 160 1 157 1.02e-68 223
MS.gene015315.t1 AT1G33060 52.761 163 67 2 1 160 19 174 2.09e-54 188
MS.gene015315.t1 AT3G10500 54.037 161 64 2 4 161 7 160 2.25e-54 186
MS.gene015315.t1 AT1G33060 52.761 163 67 2 1 160 19 174 2.33e-54 188
MS.gene015315.t1 AT4G35580 55.346 159 61 3 5 160 8 159 9.84e-54 184
MS.gene015315.t1 AT4G35580 55.346 159 61 3 5 160 8 159 1.07e-53 184
MS.gene015315.t1 AT4G35580 55.346 159 61 3 5 160 8 159 1.16e-53 184
MS.gene015315.t1 AT3G49530 51.553 161 69 2 5 162 12 166 1.44e-53 181
MS.gene015315.t1 AT3G49530 51.553 161 69 2 5 162 12 166 3.30e-53 182
MS.gene015315.t1 AT5G04410 54.088 159 63 2 5 160 8 159 9.02e-53 182
MS.gene015315.t1 AT5G22290 51.176 170 71 4 1 170 16 173 1.50e-52 177
MS.gene015315.t1 AT5G24590 50.595 168 74 2 1 165 8 169 1.86e-52 179
MS.gene015315.t1 AT1G71930 49.686 159 71 3 4 160 7 158 2.36e-51 173
MS.gene015315.t1 AT1G71930 49.686 159 71 3 4 160 7 158 2.36e-51 173
MS.gene015315.t1 AT1G79580 52.469 162 66 3 2 160 13 166 3.86e-51 174
MS.gene015315.t1 AT1G79580 52.469 162 66 3 2 160 13 166 3.86e-51 174
MS.gene015315.t1 AT1G79580 52.469 162 66 3 2 160 13 166 3.86e-51 174
MS.gene015315.t1 AT1G79580 52.469 162 66 3 2 160 13 166 3.86e-51 174
MS.gene015315.t1 AT1G79580 52.469 162 66 3 2 160 13 166 3.86e-51 174
MS.gene015315.t1 AT3G10490 51.534 163 68 2 3 161 24 179 3.97e-51 170
MS.gene015315.t1 AT3G10480 52.727 165 67 3 1 161 22 179 4.52e-51 176
MS.gene015315.t1 AT4G36160 53.165 158 65 4 5 160 13 163 5.62e-51 174
MS.gene015315.t1 AT4G36160 53.165 158 65 4 5 160 9 159 5.93e-51 173
MS.gene015315.t1 AT4G36160 53.165 158 65 4 5 160 9 159 5.93e-51 173
MS.gene015315.t1 AT4G27410 53.459 159 62 4 5 160 13 162 9.05e-51 171
MS.gene015315.t1 AT2G18060 50.617 162 71 4 1 160 4 158 1.05e-50 172
MS.gene015315.t1 AT2G18060 50.617 162 71 4 1 160 4 158 1.05e-50 172
MS.gene015315.t1 AT3G10480 51.829 164 69 2 1 161 22 178 1.55e-50 174
MS.gene015315.t1 AT3G44290 53.548 155 60 3 8 162 16 158 1.58e-50 168
MS.gene015315.t1 AT1G12260 49.686 159 71 3 4 160 5 156 1.78e-50 171
MS.gene015315.t1 AT1G12260 49.686 159 71 3 4 160 5 156 1.81e-50 172
MS.gene015315.t1 AT4G10350 42.616 237 104 8 1 220 1 222 2.47e-50 171
MS.gene015315.t1 AT5G64060 48.171 164 75 2 1 161 1 157 2.58e-50 171
MS.gene015315.t1 AT5G07680 49.143 175 67 4 6 175 3 160 2.77e-50 170
MS.gene015315.t1 AT5G07680 49.143 175 67 4 6 175 17 174 3.64e-50 170
MS.gene015315.t1 AT2G02450 51.948 154 65 3 8 160 53 198 7.62e-50 171
MS.gene015315.t1 AT1G52890 52.727 165 62 5 5 164 13 166 7.76e-50 169
MS.gene015315.t1 AT3G04070 50.877 171 70 5 4 164 8 174 8.82e-50 169
MS.gene015315.t1 AT2G02450 51.948 154 65 3 8 160 53 198 9.65e-50 170
MS.gene015315.t1 AT3G44290 53.548 155 60 3 8 162 16 158 1.01e-49 169
MS.gene015315.t1 AT3G10490 51.534 163 68 2 3 161 24 179 1.10e-49 172
MS.gene015315.t1 AT3G15500 52.727 165 62 5 5 164 13 166 1.55e-49 168
MS.gene015315.t1 AT2G24430 51.250 160 69 3 5 162 15 167 2.12e-49 167
MS.gene015315.t1 AT2G24430 51.250 160 69 3 5 162 15 167 2.12e-49 167
MS.gene015315.t1 AT2G27300 51.572 159 65 3 1 159 9 155 2.50e-49 168
MS.gene015315.t1 AT5G09330 44.324 185 93 2 1 182 1 178 3.21e-49 172
MS.gene015315.t1 AT5G09330 44.324 185 93 2 1 182 1 178 3.21e-49 172
MS.gene015315.t1 AT5G09330 44.324 185 93 2 1 182 1 178 3.21e-49 172
MS.gene015315.t1 AT5G09330 44.324 185 93 2 1 182 1 178 3.21e-49 172
MS.gene015315.t1 AT5G09330 44.324 185 93 2 1 182 1 178 3.21e-49 172
MS.gene015315.t1 AT1G62700 47.853 163 76 3 4 164 5 160 1.16e-48 168
MS.gene015315.t1 AT1G62700 47.853 163 76 3 4 164 5 160 1.16e-48 168
MS.gene015315.t1 AT5G61430 48.000 175 69 4 6 175 16 173 1.51e-48 166
MS.gene015315.t1 AT5G39610 51.250 160 64 3 6 160 20 170 1.95e-48 164
MS.gene015315.t1 AT1G61110 46.857 175 70 4 2 161 12 178 2.15e-48 165
MS.gene015315.t1 AT1G69490 46.591 176 75 4 4 169 7 173 3.66e-48 163
MS.gene015315.t1 AT3G04070 56.115 139 57 3 4 142 8 142 4.16e-48 166
MS.gene015315.t1 AT3G29035 54.088 159 54 4 6 162 24 165 4.84e-48 164
MS.gene015315.t1 AT5G66300 49.383 162 68 5 5 161 11 163 6.08e-48 163
MS.gene015315.t1 AT1G33280 48.734 158 73 2 4 160 6 156 6.91e-48 163
MS.gene015315.t1 AT1G34190 50.307 163 71 2 2 161 12 167 7.14e-48 169
MS.gene015315.t1 AT3G18400 48.780 164 69 4 5 164 4 156 7.84e-48 164
MS.gene015315.t1 AT4G27410 50.000 174 62 5 5 160 13 179 8.35e-48 164
MS.gene015315.t1 AT3G15170 50.932 161 67 3 6 161 20 173 8.39e-48 163
MS.gene015315.t1 AT1G32770 46.286 175 69 5 2 160 12 177 1.10e-47 164
MS.gene015315.t1 AT5G08790 49.697 165 65 3 5 161 6 160 2.69e-47 161
MS.gene015315.t1 AT1G01720 55.474 137 51 3 6 142 7 133 5.67e-47 160
MS.gene015315.t1 AT3G04060 49.080 163 70 3 4 161 18 172 7.45e-47 162
MS.gene015315.t1 AT3G61910 43.017 179 74 4 2 161 7 176 1.35e-46 161
MS.gene015315.t1 AT5G62380 47.170 159 75 3 4 160 5 156 1.40e-46 161
MS.gene015315.t1 AT5G62380 47.170 159 75 3 4 160 5 156 1.40e-46 161
MS.gene015315.t1 AT2G43000 50.000 158 64 4 8 160 20 167 1.43e-46 159
MS.gene015315.t1 AT3G10480 43.939 198 67 3 1 161 22 212 4.84e-46 164
MS.gene015315.t1 AT1G34180 50.641 156 67 3 8 160 18 166 6.10e-46 162
MS.gene015315.t1 AT2G46770 50.345 145 60 3 2 143 12 147 7.23e-46 160
MS.gene015315.t1 AT5G18270 49.080 163 70 3 4 161 19 173 8.80e-46 159
MS.gene015315.t1 AT5G18270 46.471 170 78 3 4 168 19 180 1.69e-45 158
MS.gene015315.t1 AT1G77450 42.534 221 99 9 3 215 5 205 1.75e-45 155
MS.gene015315.t1 AT5G53950 49.697 165 71 3 6 165 17 174 1.97e-45 159
MS.gene015315.t1 AT1G34180 50.000 156 68 2 8 160 18 166 3.55e-45 162
MS.gene015315.t1 AT2G33480 48.521 169 72 3 2 167 11 167 5.48e-45 155
MS.gene015315.t1 AT5G63790 49.390 164 65 4 5 160 49 202 5.91e-45 156
MS.gene015315.t1 AT5G63790 49.390 164 65 4 5 160 59 212 6.25e-45 156
MS.gene015315.t1 AT2G17040 40.553 217 109 5 1 205 1 209 7.87e-45 154
MS.gene015315.t1 AT5G39820 37.118 229 110 4 8 212 22 240 2.80e-44 155
MS.gene015315.t1 AT3G15510 44.970 169 72 4 10 164 21 182 3.03e-44 155
MS.gene015315.t1 AT1G26870 47.337 169 66 4 6 160 16 175 3.16e-44 157
MS.gene015315.t1 AT1G76420 50.955 157 68 3 6 160 22 171 4.07e-44 154
MS.gene015315.t1 AT1G32870 52.469 162 63 3 4 160 8 160 9.91e-44 157
MS.gene015315.t1 AT1G32870 52.469 162 63 3 4 160 8 160 1.01e-43 157
MS.gene015315.t1 AT1G52880 47.239 163 70 4 10 161 21 178 1.02e-43 153
MS.gene015315.t1 AT2G33480 47.904 167 74 3 2 167 11 165 1.07e-43 151
MS.gene015315.t1 AT1G32870 52.469 162 63 3 4 160 44 196 2.62e-43 157
MS.gene015315.t1 AT1G34180 41.063 207 100 4 2 193 12 211 7.06e-43 154
MS.gene015315.t1 AT5G13180 46.988 166 76 3 2 165 10 165 2.50e-42 147
MS.gene015315.t1 AT1G34180 47.024 168 67 4 8 160 18 178 4.26e-42 154
MS.gene015315.t1 AT3G12977 44.118 170 82 3 1 166 13 173 8.20e-41 144
MS.gene015315.t1 AT4G28530 45.714 175 69 6 3 160 7 172 8.69e-40 143
MS.gene015315.t1 AT1G56010 44.643 168 77 5 1 161 14 172 3.34e-39 141
MS.gene015315.t1 AT3G12910 42.708 192 79 8 8 176 23 206 7.03e-38 137
MS.gene015315.t1 AT5G04395 46.053 152 65 3 5 143 27 174 2.98e-35 127
MS.gene015315.t1 AT5G61430 48.333 120 42 3 61 175 6 110 1.20e-30 117
MS.gene015315.t1 AT5G22380 40.881 159 77 6 9 157 8 159 1.10e-29 114
MS.gene015315.t1 AT4G10350 41.520 171 72 6 63 220 20 175 2.98e-29 114
MS.gene015315.t1 AT3G44350 34.123 211 121 7 3 205 2 202 2.58e-28 110
MS.gene015315.t1 AT4G01550 35.938 192 112 4 9 199 7 188 8.09e-28 113
MS.gene015315.t1 AT4G01520 34.884 215 124 7 7 213 5 211 7.63e-27 107
MS.gene015315.t1 AT3G12977 49.074 108 44 2 63 166 20 120 1.43e-26 105
MS.gene015315.t1 AT3G04420 36.709 158 89 4 7 162 4 152 1.64e-26 107
MS.gene015315.t1 AT3G04420 36.709 158 89 4 7 162 4 152 1.93e-26 107
MS.gene015315.t1 AT3G44350 39.456 147 78 5 3 145 2 141 4.42e-26 102
MS.gene015315.t1 AT1G56010 49.541 109 40 3 63 164 8 108 2.19e-25 103
MS.gene015315.t1 AT4G28530 46.491 114 41 3 3 99 7 117 3.55e-25 103
MS.gene015315.t1 AT1G02230 35.057 174 97 7 7 175 4 166 1.68e-24 102
MS.gene015315.t1 AT4G01540 37.267 161 93 4 9 167 7 161 1.72e-24 103
MS.gene015315.t1 AT4G01540 37.267 161 93 4 9 167 7 161 1.85e-24 102
MS.gene015315.t1 AT5G64530 35.025 197 108 5 4 200 1 177 1.91e-24 98.6
MS.gene015315.t1 AT2G33480 47.222 108 47 2 63 167 10 110 2.89e-24 99.0
MS.gene015315.t1 AT1G02250 34.804 204 109 8 7 197 4 196 3.27e-24 102
MS.gene015315.t1 AT4G01540 37.267 161 93 4 9 167 7 161 4.98e-24 102
MS.gene015315.t1 AT4G01540 37.267 161 93 4 9 167 7 161 5.21e-24 102
MS.gene015315.t1 AT5G64530 39.855 138 64 4 5 142 2 120 6.78e-24 96.3
MS.gene015315.t1 AT1G02220 35.766 137 70 4 7 138 4 127 2.16e-21 94.4
MS.gene015315.t1 AT1G01010 34.783 161 96 6 9 165 6 161 8.96e-21 92.8
MS.gene015315.t1 AT3G10490 50.588 85 31 2 81 161 2 79 3.36e-18 84.7
MS.gene015315.t1 AT3G10490 50.588 85 31 2 81 161 2 79 3.36e-18 84.7
MS.gene015315.t1 AT5G14000 30.556 180 108 4 2 179 11 175 6.76e-18 81.3
MS.gene015315.t1 AT3G55210 31.515 165 91 5 6 157 11 166 6.04e-17 80.1
MS.gene015315.t1 AT5G14000 33.333 141 81 3 2 140 11 140 6.93e-17 77.4
MS.gene015315.t1 AT3G56530 29.487 156 99 4 5 157 51 198 1.57e-16 79.3
MS.gene015315.t1 AT2G43000 42.708 96 42 3 70 160 2 89 1.93e-16 77.0
MS.gene015315.t1 AT5G50820 30.198 202 108 8 1 191 10 189 4.50e-16 75.9
MS.gene015315.t1 AT2G18060 48.684 76 31 3 86 160 2 70 1.39e-14 73.2
MS.gene015315.t1 AT5G22290 42.857 84 37 3 87 170 2 74 9.20e-13 67.4
MS.gene015315.t1 AT1G28470 33.775 151 76 8 5 140 76 217 2.44e-11 64.3

Find 88 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTTGTCCTTGAACCATT+TGG 0.260232 5.4:-8161910 None:intergenic
GGTTGCATGTCACCTTATTC+AGG 0.278280 5.4:+8162987 MS.gene015315:CDS
CCTGACACTCCTAGCCAAAT+TGG 0.283562 5.4:+8162966 MS.gene015315:CDS
CTCGTTCCCATTGGTTGAAA+TGG 0.287030 5.4:-8162343 None:intergenic
ATGATCAGATTCATTCATTC+AGG 0.291099 5.4:+8163045 MS.gene015315:CDS
AAACTTCCTTGTCCTGAATA+AGG 0.309664 5.4:-8162999 None:intergenic
TATTTGTCCTTGAACCATTT+GGG 0.317092 5.4:-8161909 None:intergenic
ACATTGCATTGGAAGTTAAT+AGG 0.319093 5.4:-8162420 None:intergenic
GGCTTTCCAGTAGCCAGCTT+TGG 0.349829 5.4:-8161938 None:intergenic
AATTCTACAAATTTGATCCT+TGG 0.356563 5.4:+8161137 MS.gene015315:CDS
TTCAGGACAAGGAAGTTTCA+TGG 0.359502 5.4:+8163004 MS.gene015315:CDS
ATTCTACAAATTTGATCCTT+GGG 0.375015 5.4:+8161138 MS.gene015315:CDS
CCTCTTTCCTCCTTGTCCTT+CGG 0.394344 5.4:-8162295 None:intergenic
AAGGTGACATGCAACCAATT+TGG 0.396046 5.4:-8162980 None:intergenic
ATACCAATCCTACAACCTTC+TGG 0.410453 5.4:+8162478 MS.gene015315:CDS
CTTTAGGTGATCGAACCAAT+TGG 0.418283 5.4:+8162064 MS.gene015315:CDS
CCAATTTGGCTAGGAGTGTC+AGG 0.418438 5.4:-8162966 None:intergenic
AATTTGTAGAATTCAATAAC+AGG 0.424548 5.4:-8161127 None:intergenic
GAGCCACCAAAGCTGGCTAC+TGG 0.428919 5.4:+8161932 MS.gene015315:CDS
TACTGTGGAAGAGCTCCTTT+AGG 0.431670 5.4:+8162048 MS.gene015315:CDS
TGGGAACGAGGTTTCTTGTC+AGG 0.433403 5.4:+8162356 MS.gene015315:CDS
TGCAATGTCCCTCCTATGGC+TGG 0.442131 5.4:+8162435 MS.gene015315:CDS
CCGAAGGACAAGGAGGAAAG+AGG 0.451346 5.4:+8162295 MS.gene015315:CDS
TGGGAGAGCCAGAAGGTTGT+AGG 0.455808 5.4:-8162486 None:intergenic
ACAAATAGAGCCACCAAAGC+TGG 0.456357 5.4:+8161925 MS.gene015315:CDS
TTTAGGTGATCGAACCAATT+GGG 0.469718 5.4:+8162065 MS.gene015315:CDS
ATATTCATGCATGACCCAAT+TGG 0.471797 5.4:-8162079 None:intergenic
CCAACCGATGAAGAGTTGAT+AGG 0.477569 5.4:+8161052 MS.gene015315:CDS
TTTCCAGTAGCCAGCTTTGG+TGG 0.478466 5.4:-8161935 None:intergenic
GGGCAATTACAAGATGTTGT+TGG 0.478523 5.4:+8162828 MS.gene015315:CDS
GCAATTCCATTTCAACCAAT+GGG 0.481299 5.4:+8162337 MS.gene015315:CDS
AAGAGGGTTAGAGCTAATGA+TGG 0.484892 5.4:+8162312 MS.gene015315:CDS
AGCAATTCCATTTCAACCAA+TGG 0.488117 5.4:+8162336 MS.gene015315:CDS
CATGATTCTTGATTCTTCAA+AGG 0.488637 5.4:+8162512 MS.gene015315:CDS
GGAGGAGCTTCACTGCCTCC+AGG 0.489497 5.4:+8161016 MS.gene015315:CDS
CCAATGCAATGTCCCTCCTA+TGG 0.494392 5.4:+8162431 MS.gene015315:CDS
GGTTGTAGGATTGGTATCAG+AGG 0.501312 5.4:-8162472 None:intergenic
GAGCCAGAAGGTTGTAGGAT+TGG 0.503637 5.4:-8162481 None:intergenic
ATCTGATCATAGCATTCATA+AGG 0.503854 5.4:-8163032 None:intergenic
CCTATCAACTCTTCATCGGT+TGG 0.504532 5.4:-8161052 None:intergenic
TCAACTCTTCATCGGTTGGA+TGG 0.522689 5.4:-8161048 None:intergenic
CGGGATCGCAAGTACCCAAA+TGG 0.524999 5.4:+8161895 MS.gene015315:CDS
ATTTCCACTGAGACTGTCAC+AGG 0.530687 5.4:+8162003 MS.gene015315:CDS
ACAAGAAACCTCGTTCCCAT+TGG 0.531913 5.4:-8162352 None:intergenic
AGACATTTACCTCCGAGCCT+TGG 0.532346 5.4:-8162122 None:intergenic
GCAAGTACCCAAATGGTTCA+AGG 0.532989 5.4:+8161902 MS.gene015315:CDS
AAGAATCAAGAATCATGTCA+TGG 0.536644 5.4:-8162506 None:intergenic
CCATAGGAGGGACATTGCAT+TGG 0.543388 5.4:-8162431 None:intergenic
GATTGGTATCAGAGGAAGCT+TGG 0.544770 5.4:-8162464 None:intergenic
AACTAGCAGGACTATTCTCA+AGG 0.550921 5.4:+8162807 MS.gene015315:intron
TTTACCTCCGAGCCTTGGCT+AGG 0.552976 5.4:-8162117 None:intergenic
TTTGATCCTTGGGAGTTACC+TGG 0.560186 5.4:+8161148 MS.gene015315:CDS
TTCCGCATTAAAATTTGAGT+AGG 0.567816 5.4:-8162934 None:intergenic
TTTGGGTACTTGCGATCCCG+TGG 0.573459 5.4:-8161892 None:intergenic
ATATCCTATCAACTCTTCAT+CGG 0.573542 5.4:-8161056 None:intergenic
CTCGATAACTCATGTTGCTG+TGG 0.576057 5.4:-8162858 None:intergenic
TGGTCAAATCCAGCCATAGG+AGG 0.577334 5.4:-8162444 None:intergenic
TCAGTGGAAATGAATGGACT+AGG 0.578648 5.4:-8161991 None:intergenic
CATTTCAACCAATGGGAACG+AGG 0.580432 5.4:+8162344 MS.gene015315:CDS
GTTGGATGGAAACGAAAACC+TGG 0.583973 5.4:-8161034 None:intergenic
ACAGTCTCAGTGGAAATGAA+TGG 0.584355 5.4:-8161997 None:intergenic
CAATTGGTTCGATCACCTAA+AGG 0.588285 5.4:-8162063 None:intergenic
TGATGATCCTAGCCAAGGCT+CGG 0.588446 5.4:+8162110 MS.gene015315:CDS
GCTTGGTCAAATCCAGCCAT+AGG 0.594904 5.4:-8162447 None:intergenic
AGAATCAAGAATCATGTCAT+GGG 0.595091 5.4:-8162505 None:intergenic
GCTGGCTACTGGAAAGCCAC+AGG 0.598108 5.4:+8161943 MS.gene015315:CDS
GGAAAGCCACAGGAAAAGAC+AGG 0.599029 5.4:+8161953 MS.gene015315:CDS
CTCAATGATGATCCTAGCCA+AGG 0.611417 5.4:+8162105 MS.gene015315:CDS
CGAAGGACAAGGAGGAAAGA+GGG 0.614265 5.4:+8162296 MS.gene015315:CDS
AAATTTGAGTAGGATGAACA+AGG 0.615587 5.4:-8162924 None:intergenic
TATCGAGTACAATCTCAACT+TGG 0.616686 5.4:+8162874 MS.gene015315:CDS
GCAAATGATTCCGAAGGACA+AGG 0.617621 5.4:+8162285 MS.gene015315:CDS
CATGTCATGGGAGAGCCAGA+AGG 0.622804 5.4:-8162493 None:intergenic
GAGAAGGCAAATGATTCCGA+AGG 0.623623 5.4:+8162279 MS.gene015315:CDS
ATGTCACCTTATTCAGGACA+AGG 0.624913 5.4:+8162993 MS.gene015315:CDS
ACATAGAAATATAGAATGGG+AGG 0.627145 5.4:+8160998 None:intergenic
AGAGGGTTAGAGCTAATGAT+GGG 0.630099 5.4:+8162313 MS.gene015315:CDS
GGTCAAATCCAGCCATAGGA+GGG 0.633856 5.4:-8162443 None:intergenic
GACATGCAACCAATTTGGCT+AGG 0.642381 5.4:-8162975 None:intergenic
GACCTACCAGGTAACTCCCA+AGG 0.644578 5.4:-8161154 None:intergenic
CTTGGCTAGGATCATCATTG+AGG 0.653192 5.4:-8162104 None:intergenic
CAGGCAAGTCAACTATTGAG+TGG 0.665687 5.4:+8162375 MS.gene015315:CDS
ACTAGCAGGACTATTCTCAA+GGG 0.665974 5.4:+8162808 MS.gene015315:intron
AGCCACAGGAAAAGACAGGA+AGG 0.673089 5.4:+8161957 MS.gene015315:CDS
GTAACCTGTGACAGTCTCAG+TGG 0.678126 5.4:-8162007 None:intergenic
TGATCCTAGCCAAGGCTCGG+AGG 0.696143 5.4:+8162113 MS.gene015315:CDS
AATGATTCCGAAGGACAAGG+AGG 0.715890 5.4:+8162288 MS.gene015315:CDS
GGATGGAAACGAAAACCTGG+AGG 0.767680 5.4:-8161031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAACTTTTGAAAACTTTT+AGG + chr5.4:8161344-8161363 MS.gene015315:intron 15.0%
!!! TTTCCATTATTTAATTTTGA+GGG - chr5.4:8161624-8161643 None:intergenic 15.0%
!!! TTTTCCATTATTTAATTTTG+AGG - chr5.4:8161625-8161644 None:intergenic 15.0%
!! AATTTGTAGAATTCAATAAC+AGG - chr5.4:8161130-8161149 None:intergenic 20.0%
!! AGTTATTAAAAAGAATGAGA+AGG + chr5.4:8162263-8162282 MS.gene015315:CDS 20.0%
!! TAACCCTCAAAATTAAATAA+TGG + chr5.4:8161618-8161637 MS.gene015315:intron 20.0%
!! TCTAACATAAAGTTAGAATT+TGG + chr5.4:8162582-8162601 MS.gene015315:intron 20.0%
!!! AATATGTTTTCTTTAGAGTT+GGG + chr5.4:8161733-8161752 MS.gene015315:intron 20.0%
!!! TAATATGTTTTCTTTAGAGT+TGG + chr5.4:8161732-8161751 MS.gene015315:intron 20.0%
!!! TCTCATTCTTTTTAATAACT+CGG - chr5.4:8162263-8162282 None:intergenic 20.0%
! AATTCTACAAATTTGATCCT+TGG + chr5.4:8161137-8161156 MS.gene015315:CDS 25.0%
! ACACGATTAATCACAAAATT+CGG - chr5.4:8161691-8161710 None:intergenic 25.0%
! ATTCTACAAATTTGATCCTT+GGG + chr5.4:8161138-8161157 MS.gene015315:CDS 25.0%
! TACCTAAAAAGAAAAGTTGA+GGG + chr5.4:8161079-8161098 MS.gene015315:CDS 25.0%
! TTACCTAAAAAGAAAAGTTG+AGG + chr5.4:8161078-8161097 MS.gene015315:CDS 25.0%
! TTTAAGAGAACTCTAATTTG+TGG + chr5.4:8161800-8161819 MS.gene015315:intron 25.0%
!! TTAAGAGAACTCTAATTTGT+GGG + chr5.4:8161801-8161820 MS.gene015315:intron 25.0%
!!! ATCCTACTCAAATTTTAATG+CGG + chr5.4:8162932-8162951 MS.gene015315:CDS 25.0%
AAATTTGAGTAGGATGAACA+AGG - chr5.4:8162927-8162946 None:intergenic 30.0%
AACTAATATCTACATGTGTC+TGG - chr5.4:8162755-8162774 None:intergenic 30.0%
AAGAATCAAGAATCATGTCA+TGG - chr5.4:8162509-8162528 None:intergenic 30.0%
ACAACAAATAGGAGGATTTA+AGG + chr5.4:8161514-8161533 MS.gene015315:intron 30.0%
ACATTGCATTGGAAGTTAAT+AGG - chr5.4:8162423-8162442 None:intergenic 30.0%
AGAATCAAGAATCATGTCAT+GGG - chr5.4:8162508-8162527 None:intergenic 30.0%
ATATCCTATCAACTCTTCAT+CGG - chr5.4:8161059-8161078 None:intergenic 30.0%
ATCTGATCATAGCATTCATA+AGG - chr5.4:8163035-8163054 None:intergenic 30.0%
ATGATCAGATTCATTCATTC+AGG + chr5.4:8163045-8163064 MS.gene015315:CDS 30.0%
CATGATTCTTGATTCTTCAA+AGG + chr5.4:8162512-8162531 MS.gene015315:CDS 30.0%
TATTTGTCCTTGAACCATTT+GGG - chr5.4:8161912-8161931 None:intergenic 30.0%
TCTTATTGATCACTGTTGTA+GGG + chr5.4:8162222-8162241 MS.gene015315:intron 30.0%
TCTTCCACAGTAAAAAACTA+GGG - chr5.4:8162040-8162059 None:intergenic 30.0%
TTCCGCATTAAAATTTGAGT+AGG - chr5.4:8162937-8162956 None:intergenic 30.0%
TTCTTATTGATCACTGTTGT+AGG + chr5.4:8162221-8162240 MS.gene015315:intron 30.0%
! AACCATTCCATATCTCTTTT+TGG - chr5.4:8161862-8161881 None:intergenic 30.0%
! TAAGAGAACTCTAATTTGTG+GGG + chr5.4:8161802-8161821 MS.gene015315:intron 30.0%
!!! TTGTTTTGAGCTAACTACTA+AGG + chr5.4:8161774-8161793 MS.gene015315:intron 30.0%
AAACTTCCTTGTCCTGAATA+AGG - chr5.4:8163002-8163021 None:intergenic 35.0%
AGCAATTCCATTTCAACCAA+TGG + chr5.4:8162336-8162355 MS.gene015315:CDS 35.0%
AGTAAAAAACTAGGGTCTTG+CGG - chr5.4:8162032-8162051 None:intergenic 35.0%
ATATTCATGCATGACCCAAT+TGG - chr5.4:8162082-8162101 None:intergenic 35.0%
CTAAAATAATCCCGTTGAAC+CGG - chr5.4:8161379-8161398 None:intergenic 35.0%
CTATTTGTCCTTGAACCATT+TGG - chr5.4:8161913-8161932 None:intergenic 35.0%
CTCTTCCACAGTAAAAAACT+AGG - chr5.4:8162041-8162060 None:intergenic 35.0%
GCAATTCCATTTCAACCAAT+GGG + chr5.4:8162337-8162356 MS.gene015315:CDS 35.0%
TATCGAGTACAATCTCAACT+TGG + chr5.4:8162874-8162893 MS.gene015315:CDS 35.0%
TCACATATTGATCAGTTGCA+TGG + chr5.4:8161187-8161206 MS.gene015315:intron 35.0%
TGCCAAAAAGAGATATGGAA+TGG + chr5.4:8161857-8161876 MS.gene015315:CDS 35.0%
TTTAGGTGATCGAACCAATT+GGG + chr5.4:8162065-8162084 MS.gene015315:CDS 35.0%
TTTCCTGCCAAAAAGAGATA+TGG + chr5.4:8161852-8161871 MS.gene015315:CDS 35.0%
! AACTTTTAGGCTGTAAAAGC+CGG + chr5.4:8161357-8161376 MS.gene015315:intron 35.0%
! AATGGTTTTTCTTCTGTCCA+CGG + chr5.4:8161875-8161894 MS.gene015315:CDS 35.0%
! GTCCCTCAACTTTTCTTTTT+AGG - chr5.4:8161084-8161103 None:intergenic 35.0%
!! ATTCCATATCTCTTTTTGGC+AGG - chr5.4:8161858-8161877 None:intergenic 35.0%
!!! AAGACCCTAGTTTTTTACTG+TGG + chr5.4:8162033-8162052 MS.gene015315:CDS 35.0%
AACTAGCAGGACTATTCTCA+AGG + chr5.4:8162807-8162826 MS.gene015315:intron 40.0%
AAGAGGGTTAGAGCTAATGA+TGG + chr5.4:8162312-8162331 MS.gene015315:CDS 40.0%
AAGCCCTTGAAATATGGTTC+AGG + chr5.4:8161548-8161567 MS.gene015315:intron 40.0%
AAGGTGACATGCAACCAATT+TGG - chr5.4:8162983-8163002 None:intergenic 40.0%
ACAGTCTCAGTGGAAATGAA+TGG - chr5.4:8162000-8162019 None:intergenic 40.0%
ACCCCTGAACCATATTTCAA+GGG - chr5.4:8161554-8161573 None:intergenic 40.0%
ACGTAATGTAGCAGAGTGAA+TGG + chr5.4:8161481-8161500 MS.gene015315:intron 40.0%
ACTAGCAGGACTATTCTCAA+GGG + chr5.4:8162808-8162827 MS.gene015315:intron 40.0%
AGAGGGTTAGAGCTAATGAT+GGG + chr5.4:8162313-8162332 MS.gene015315:CDS 40.0%
AGCCCTTGAAATATGGTTCA+GGG + chr5.4:8161549-8161568 MS.gene015315:intron 40.0%
ATACCAATCCTACAACCTTC+TGG + chr5.4:8162478-8162497 MS.gene015315:CDS 40.0%
ATGTCACCTTATTCAGGACA+AGG + chr5.4:8162993-8163012 MS.gene015315:CDS 40.0%
CTCAAAGCACAACAAATAGG+AGG + chr5.4:8161506-8161525 MS.gene015315:intron 40.0%
CTTTAGGTGATCGAACCAAT+TGG + chr5.4:8162064-8162083 MS.gene015315:CDS 40.0%
GAAATTGAAGATGACCTACC+AGG - chr5.4:8161169-8161188 None:intergenic 40.0%
GAGCTCAAAGCACAACAAAT+AGG + chr5.4:8161503-8161522 MS.gene015315:intron 40.0%
GGGCAATTACAAGATGTTGT+TGG + chr5.4:8162828-8162847 MS.gene015315:CDS 40.0%
TACCCCTGAACCATATTTCA+AGG - chr5.4:8161555-8161574 None:intergenic 40.0%
TACCTCAACCAACCTATTGT+CGG + chr5.4:8161647-8161666 MS.gene015315:intron 40.0%
TTCAGGACAAGGAAGTTTCA+TGG + chr5.4:8163004-8163023 MS.gene015315:CDS 40.0%
TTGAGAATAGTCCTGCTAGT+TGG - chr5.4:8162808-8162827 None:intergenic 40.0%
! ATAGGAGGATTTAAGGTGTG+AGG + chr5.4:8161521-8161540 MS.gene015315:intron 40.0%
! ATGGTTTTTCTTCTGTCCAC+GGG + chr5.4:8161876-8161895 MS.gene015315:CDS 40.0%
! TAGGAGGATTTAAGGTGTGA+GGG + chr5.4:8161522-8161541 MS.gene015315:intron 40.0%
! TCAGTGGAAATGAATGGACT+AGG - chr5.4:8161994-8162013 None:intergenic 40.0%
! TTTTTCCTCTTCCAACTAGC+AGG + chr5.4:8162794-8162813 MS.gene015315:intron 40.0%
!! CAATTGGTTCGATCACCTAA+AGG - chr5.4:8162066-8162085 None:intergenic 40.0%
AATGATTCCGAAGGACAAGG+AGG + chr5.4:8162288-8162307 MS.gene015315:CDS 45.0%
ACAAATAGAGCCACCAAAGC+TGG + chr5.4:8161925-8161944 MS.gene015315:CDS 45.0%
ACAAGAAACCTCGTTCCCAT+TGG - chr5.4:8162355-8162374 None:intergenic 45.0%
ATAGTCCTGCTAGTTGGAAG+AGG - chr5.4:8162802-8162821 None:intergenic 45.0%
ATTTCCACTGAGACTGTCAC+AGG + chr5.4:8162003-8162022 MS.gene015315:CDS 45.0%
CAGGCAAGTCAACTATTGAG+TGG + chr5.4:8162375-8162394 MS.gene015315:CDS 45.0%
CATTTCAACCAATGGGAACG+AGG + chr5.4:8162344-8162363 MS.gene015315:CDS 45.0%
CCTATCAACTCTTCATCGGT+TGG - chr5.4:8161055-8161074 None:intergenic 45.0%
CTACTTCTCCGACAATAGGT+TGG - chr5.4:8161658-8161677 None:intergenic 45.0%
CTCAATGATGATCCTAGCCA+AGG + chr5.4:8162105-8162124 MS.gene015315:CDS 45.0%
CTCGATAACTCATGTTGCTG+TGG - chr5.4:8162861-8162880 None:intergenic 45.0%
CTTGGCTAGGATCATCATTG+AGG - chr5.4:8162107-8162126 None:intergenic 45.0%
GACATGCAACCAATTTGGCT+AGG - chr5.4:8162978-8162997 None:intergenic 45.0%
GAGAAGGCAAATGATTCCGA+AGG + chr5.4:8162279-8162298 MS.gene015315:CDS 45.0%
GATTGGTATCAGAGGAAGCT+TGG - chr5.4:8162467-8162486 None:intergenic 45.0%
GCAAATGATTCCGAAGGACA+AGG + chr5.4:8162285-8162304 MS.gene015315:CDS 45.0%
GCAAGTACCCAAATGGTTCA+AGG + chr5.4:8161902-8161921 MS.gene015315:CDS 45.0%
GCCCTTGAAATATGGTTCAG+GGG + chr5.4:8161550-8161569 MS.gene015315:intron 45.0%
GGTTGCATGTCACCTTATTC+AGG + chr5.4:8162987-8163006 MS.gene015315:CDS 45.0%
GTCGGAGAAGTAGACACTAT+TGG + chr5.4:8161665-8161684 MS.gene015315:intron 45.0%
GTGTCTACTTCTCCGACAAT+AGG - chr5.4:8161662-8161681 None:intergenic 45.0%
GTTGGATGGAAACGAAAACC+TGG - chr5.4:8161037-8161056 None:intergenic 45.0%
TACTGTGGAAGAGCTCCTTT+AGG + chr5.4:8162048-8162067 MS.gene015315:CDS 45.0%
TTTGATCCTTGGGAGTTACC+TGG + chr5.4:8161148-8161167 MS.gene015315:CDS 45.0%
! AACCTTCCTGTCTTTTCCTG+TGG - chr5.4:8161962-8161981 None:intergenic 45.0%
! AGGAGGATTTAAGGTGTGAG+GGG + chr5.4:8161523-8161542 MS.gene015315:intron 45.0%
! CCAACCGATGAAGAGTTGAT+AGG + chr5.4:8161052-8161071 MS.gene015315:CDS 45.0%
! CTCGTTCCCATTGGTTGAAA+TGG - chr5.4:8162346-8162365 None:intergenic 45.0%
! GGTTGTAGGATTGGTATCAG+AGG - chr5.4:8162475-8162494 None:intergenic 45.0%
! TCAACTCTTCATCGGTTGGA+TGG - chr5.4:8161051-8161070 None:intergenic 45.0%
!! TCTACATGTGTCTGGTTCTG+CGG - chr5.4:8162747-8162766 None:intergenic 45.0%
AGACATTTACCTCCGAGCCT+TGG - chr5.4:8162125-8162144 None:intergenic 50.0%
AGCCACAGGAAAAGACAGGA+AGG + chr5.4:8161957-8161976 MS.gene015315:CDS 50.0%
ATCCTTGGGAGTTACCTGGT+AGG + chr5.4:8161152-8161171 MS.gene015315:intron 50.0%
CCAATGCAATGTCCCTCCTA+TGG + chr5.4:8162431-8162450 MS.gene015315:CDS 50.0%
CCATAGGAGGGACATTGCAT+TGG - chr5.4:8162434-8162453 None:intergenic 50.0%
CCTCTTTCCTCCTTGTCCTT+CGG - chr5.4:8162298-8162317 None:intergenic 50.0%
CCTGACACTCCTAGCCAAAT+TGG + chr5.4:8162966-8162985 MS.gene015315:CDS 50.0%
CGAAGGACAAGGAGGAAAGA+GGG + chr5.4:8162296-8162315 MS.gene015315:CDS 50.0%
GAGCCAGAAGGTTGTAGGAT+TGG - chr5.4:8162484-8162503 None:intergenic 50.0%
GCTTGGTCAAATCCAGCCAT+AGG - chr5.4:8162450-8162469 None:intergenic 50.0%
GGAAAGCCACAGGAAAAGAC+AGG + chr5.4:8161953-8161972 MS.gene015315:CDS 50.0%
GGATGGAAACGAAAACCTGG+AGG - chr5.4:8161034-8161053 None:intergenic 50.0%
GGTCAAATCCAGCCATAGGA+GGG - chr5.4:8162446-8162465 None:intergenic 50.0%
GTAACCTGTGACAGTCTCAG+TGG - chr5.4:8162010-8162029 None:intergenic 50.0%
TGATGATCCTAGCCAAGGCT+CGG + chr5.4:8162110-8162129 MS.gene015315:CDS 50.0%
TGGGAACGAGGTTTCTTGTC+AGG + chr5.4:8162356-8162375 MS.gene015315:CDS 50.0%
TGGTCAAATCCAGCCATAGG+AGG - chr5.4:8162447-8162466 None:intergenic 50.0%
! GCTGTAAAAGCCGGTTCAAC+GGG + chr5.4:8161366-8161385 MS.gene015315:intron 50.0%
! GGCTGTAAAAGCCGGTTCAA+CGG + chr5.4:8161365-8161384 MS.gene015315:intron 50.0%
! TTTCCAGTAGCCAGCTTTGG+TGG - chr5.4:8161938-8161957 None:intergenic 50.0%
!! CCAATTTGGCTAGGAGTGTC+AGG - chr5.4:8162969-8162988 None:intergenic 50.0%
!! CTCCGACAATAGGTTGGTTG+AGG - chr5.4:8161652-8161671 None:intergenic 50.0%
CATGTCATGGGAGAGCCAGA+AGG - chr5.4:8162496-8162515 None:intergenic 55.0%
CCGAAGGACAAGGAGGAAAG+AGG + chr5.4:8162295-8162314 MS.gene015315:CDS 55.0%
CGGGATCGCAAGTACCCAAA+TGG + chr5.4:8161895-8161914 MS.gene015315:CDS 55.0%
GACCTACCAGGTAACTCCCA+AGG - chr5.4:8161157-8161176 None:intergenic 55.0%
GGCTTTCCAGTAGCCAGCTT+TGG - chr5.4:8161941-8161960 None:intergenic 55.0%
GGGGCGAAGCCCTTGAAATA+TGG + chr5.4:8161542-8161561 MS.gene015315:intron 55.0%
TGCAATGTCCCTCCTATGGC+TGG + chr5.4:8162435-8162454 MS.gene015315:CDS 55.0%
TGGGAGAGCCAGAAGGTTGT+AGG - chr5.4:8162489-8162508 None:intergenic 55.0%
TTTACCTCCGAGCCTTGGCT+AGG - chr5.4:8162120-8162139 None:intergenic 55.0%
TTTGGGTACTTGCGATCCCG+TGG - chr5.4:8161895-8161914 None:intergenic 55.0%
GAGCCACCAAAGCTGGCTAC+TGG + chr5.4:8161932-8161951 MS.gene015315:CDS 60.0%
GCTGGCTACTGGAAAGCCAC+AGG + chr5.4:8161943-8161962 MS.gene015315:CDS 60.0%
TGATCCTAGCCAAGGCTCGG+AGG + chr5.4:8162113-8162132 MS.gene015315:CDS 60.0%
GGAGGAGCTTCACTGCCTCC+AGG + chr5.4:8161016-8161035 MS.gene015315:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 8161013 8163085 8161013 ID=MS.gene015315
chr5.4 mRNA 8161013 8163085 8161013 ID=MS.gene015315.t1;Parent=MS.gene015315
chr5.4 exon 8161013 8161169 8161013 ID=MS.gene015315.t1.exon1;Parent=MS.gene015315.t1
chr5.4 CDS 8161013 8161169 8161013 ID=cds.MS.gene015315.t1;Parent=MS.gene015315.t1
chr5.4 exon 8161845 8162134 8161845 ID=MS.gene015315.t1.exon2;Parent=MS.gene015315.t1
chr5.4 CDS 8161845 8162134 8161845 ID=cds.MS.gene015315.t1;Parent=MS.gene015315.t1
chr5.4 exon 8162243 8162533 8162243 ID=MS.gene015315.t1.exon3;Parent=MS.gene015315.t1
chr5.4 CDS 8162243 8162533 8162243 ID=cds.MS.gene015315.t1;Parent=MS.gene015315.t1
chr5.4 exon 8162816 8163085 8162816 ID=MS.gene015315.t1.exon4;Parent=MS.gene015315.t1
chr5.4 CDS 8162816 8163085 8162816 ID=cds.MS.gene015315.t1;Parent=MS.gene015315.t1
Gene Sequence

>MS.gene015315

ATGGGAGGAGCTTCACTGCCTCCAGGTTTTCGTTTCCATCCAACCGATGAAGAGTTGATAGGATATTACCTAAAAAGAAAAGTTGAGGGACTTGAAATTGAGCTTGAAGTTATACCTGTTATTGAATTCTACAAATTTGATCCTTGGGAGTTACCTGGTAGGTCATCTTCAATTTCACATATTGATCAGTTGCATGGTTGCATAACATGTGTAGTGTGCTACTTTAGAAAAGAAAAAAACTCTTTCATTATGCTAGAGTGTGAACTGAAACTTTATAAGTTGTAGAAAGTAGAAAGCAGCATTTTGTTTTGTTGTTACTTTTTCTTTATTGATTAACTTTTGAAAACTTTTAGGCTGTAAAAGCCGGTTCAACGGGATTATTTTAGTCTAAGATTAAAAAAACTGAAAATGAAATTCTTTTTTTCGTTGAGCATGACTCATATTCACTGATAAGTAGTAGAAGCTCAGACGTAATGTAGCAGAGTGAATGGAGCTCAAAGCACAACAAATAGGAGGATTTAAGGTGTGAGGGGCGAAGCCCTTGAAATATGGTTCAGGGGTAAACTTGTAATTTGAACTGTAATAGTTAAACATGCTGTGCTGTGTAACCCTCAAAATTAAATAATGGAAAAATTACCTCAACCAACCTATTGTCGGAGAAGTAGACACTATTGGCCGAATTTTGTGATTAATCGTGTTTATTTTTGTGTGCACTTTATTAATATGTTTTCTTTAGAGTTGGGTTTGATGTTGTAACTTATTTGTTTTGAGCTAACTACTAAGGAAATTTAAGAGAACTCTAATTTGTGGGGTGTGTGTCGAATGAATGCAGAGAAATCTTTCCTGCCAAAAAGAGATATGGAATGGTTTTTCTTCTGTCCACGGGATCGCAAGTACCCAAATGGTTCAAGGACAAATAGAGCCACCAAAGCTGGCTACTGGAAAGCCACAGGAAAAGACAGGAAGGTTGTGTGTGAGCCTAGTCCATTCATTTCCACTGAGACTGTCACAGGTTACCGCAAGACCCTAGTTTTTTACTGTGGAAGAGCTCCTTTAGGTGATCGAACCAATTGGGTCATGCATGAATATCGCCTCAATGATGATCCTAGCCAAGGCTCGGAGGTAAATGTCTCTCTTTAGTGTGAGTTTAGTTCTACTGCAGAAACTATGAGAATTTTTTCATTATCAAATTAACTTTACTGAATCAATTCTTATTGATCACTGTTGTAGGGTGCTTTTGCTTTATGCCGAGTTATTAAAAAGAATGAGAAGGCAAATGATTCCGAAGGACAAGGAGGAAAGAGGGTTAGAGCTAATGATGGGAGCAATTCCATTTCAACCAATGGGAACGAGGTTTCTTGTCAGGCAAGTCAACTATTGAGTGGCAGTGAGAGTCATTATTCAAGTCCTATTAACTTCCAATGCAATGTCCCTCCTATGGCTGGATTTGACCAAGCTTCCTCTGATACCAATCCTACAACCTTCTGGCTCTCCCATGACATGATTCTTGATTCTTCAAAGGTACTAAATTGATTTTAATATGTTTGAATGTTCTCAGATAGAATTGATTCTAACATAAAGTTAGAATTTGGAGCTTTTGTTTCTACAATTGATTTTTAGTCTTGAATTTATTGTTCAACTAACTTTTATACGAATGCATTCAAATATAAATCACTTTATATTCAACTCAATTTTAGTCAGAATCAATTTATTCAAAATCATTTCTTGTCACCGCAGAACCAGACACATGTAGATATTAGTTAGAAATGTTTCTTCTTACATTTTTCCTCTTCCAACTAGCAGGACTATTCTCAAGGGCAATTACAAGATGTTGTTGGATGTTTTCCACAGCAACATGAGTTATCGAGTACAATCTCAACTTGGCAATCATTTCAACATACTGAAATTTCACCTTGTTCATCCTACTCAAATTTTAATGCGGAAATTGAATTTCCTGACACTCCTAGCCAAATTGGTTGCATGTCACCTTATTCAGGACAAGGAAGTTTCATGGACTTGCCTTATGAATGCTATGATCAGATTCATTCATTCAGGAATCCAAATCAATTCTGA
Protein sequence

>MS.gene015315.t1

MGGASLPPGFRFHPTDEELIGYYLKRKVEGLEIELEVIPVIEFYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCEPSPFISTETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLNDDPSQGSEGAFALCRVIKKNEKANDSEGQGGKRVRANDGSNSISTNGNEVSCQASQLLSGSESHYSSPINFQCNVPPMAGFDQASSDTNPTTFWLSHDMILDSSKDYSQGQLQDVVGCFPQQHELSSTISTWQSFQHTEISPCSSYSNFNAEIEFPDTPSQIGCMSPYSGQGSFMDLPYECYDQIHSFRNPNQF