Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015328.t1 | XP_024632961.1 | 90.4 | 456 | 36 | 1 | 1 | 448 | 81 | 536 | 1.00E-245 | 859 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015328.t1 | Q9SZL8 | 28.2 | 432 | 291 | 5 | 6 | 435 | 104 | 518 | 1.0e-52 | 209.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015328.t1 | D3YBB9 | 84.3 | 447 | 70 | 0 | 2 | 448 | 114 | 560 | 2.9e-226 | 793.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015328.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015328.t1 | MTR_0558s0020 | 88.745 | 231 | 26 | 0 | 1 | 231 | 66 | 296 | 1.24e-156 | 446 |
| MS.gene015328.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 1 | 237 | 1 | 237 | 1.65e-146 | 422 |
| MS.gene015328.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 332 | 431 | 230 | 306 | 4.86e-35 | 134 |
| MS.gene015328.t1 | MTR_1g083640 | 90.196 | 204 | 20 | 0 | 1 | 204 | 81 | 284 | 1.10e-139 | 402 |
| MS.gene015328.t1 | MTR_8g446020 | 79.386 | 228 | 47 | 0 | 4 | 231 | 29 | 256 | 1.82e-134 | 388 |
| MS.gene015328.t1 | MTR_0337s0040 | 77.604 | 192 | 43 | 0 | 4 | 195 | 30 | 221 | 8.55e-109 | 321 |
| MS.gene015328.t1 | MTR_2g014100 | 86.628 | 172 | 23 | 0 | 1 | 172 | 74 | 245 | 1.33e-108 | 322 |
| MS.gene015328.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 27 | 168 | 3 | 144 | 4.76e-89 | 268 |
| MS.gene015328.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 18 | 169 | 9 | 160 | 2.66e-88 | 266 |
| MS.gene015328.t1 | MTR_3g008240 | 86.232 | 138 | 19 | 0 | 1 | 138 | 66 | 203 | 3.44e-83 | 255 |
| MS.gene015328.t1 | MTR_4g040430 | 85.507 | 138 | 16 | 1 | 1 | 138 | 65 | 198 | 1.46e-81 | 251 |
| MS.gene015328.t1 | MTR_5g071590 | 80.769 | 104 | 20 | 0 | 1 | 104 | 78 | 181 | 2.25e-59 | 193 |
| MS.gene015328.t1 | MTR_6g051425 | 33.333 | 273 | 154 | 5 | 21 | 277 | 64 | 324 | 8.47e-38 | 141 |
| MS.gene015328.t1 | MTR_0337s0060 | 93.939 | 66 | 4 | 0 | 383 | 448 | 21 | 86 | 8.95e-36 | 132 |
| MS.gene015328.t1 | MTR_1281s0010 | 82.540 | 63 | 11 | 0 | 1 | 63 | 47 | 109 | 2.42e-30 | 114 |
| MS.gene015328.t1 | MTR_1g070355 | 25.714 | 280 | 192 | 4 | 21 | 298 | 119 | 384 | 6.33e-17 | 83.6 |
| MS.gene015328.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 195 | 230 | 14 | 49 | 7.24e-14 | 67.0 |
| MS.gene015328.t1 | MTR_0402s0040 | 26.000 | 150 | 96 | 3 | 20 | 169 | 71 | 205 | 1.15e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015328.t1 | AT4G38180 | 29.551 | 423 | 269 | 6 | 20 | 435 | 118 | 518 | 7.12e-61 | 212 |
| MS.gene015328.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 59 | 443 | 121 | 502 | 1.34e-40 | 155 |
| MS.gene015328.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 59 | 443 | 121 | 502 | 1.34e-40 | 155 |
| MS.gene015328.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 59 | 443 | 121 | 502 | 1.34e-40 | 155 |
| MS.gene015328.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 59 | 443 | 121 | 502 | 1.34e-40 | 155 |
| MS.gene015328.t1 | AT4G15090 | 25.773 | 388 | 279 | 5 | 59 | 443 | 121 | 502 | 1.34e-40 | 155 |
| MS.gene015328.t1 | AT3G06250 | 26.196 | 439 | 255 | 9 | 20 | 457 | 235 | 605 | 1.70e-39 | 152 |
| MS.gene015328.t1 | AT3G06250 | 26.196 | 439 | 255 | 9 | 20 | 457 | 235 | 605 | 1.70e-39 | 152 |
| MS.gene015328.t1 | AT3G06250 | 26.196 | 439 | 255 | 9 | 20 | 457 | 235 | 605 | 1.70e-39 | 152 |
| MS.gene015328.t1 | AT1G76320 | 26.905 | 420 | 269 | 10 | 19 | 432 | 41 | 428 | 6.55e-39 | 149 |
| MS.gene015328.t1 | AT4G38170 | 28.623 | 276 | 186 | 4 | 171 | 443 | 24 | 291 | 1.18e-38 | 147 |
| MS.gene015328.t1 | AT2G27110 | 27.586 | 377 | 248 | 7 | 63 | 435 | 108 | 463 | 1.25e-38 | 149 |
| MS.gene015328.t1 | AT2G27110 | 27.586 | 377 | 248 | 7 | 63 | 435 | 108 | 463 | 1.25e-38 | 149 |
| MS.gene015328.t1 | AT1G76320 | 26.905 | 420 | 269 | 10 | 19 | 432 | 41 | 428 | 1.39e-38 | 149 |
| MS.gene015328.t1 | AT1G76320 | 26.905 | 420 | 269 | 10 | 19 | 432 | 41 | 428 | 1.39e-38 | 149 |
| MS.gene015328.t1 | AT1G76320 | 26.905 | 420 | 269 | 10 | 19 | 432 | 41 | 428 | 1.43e-38 | 149 |
| MS.gene015328.t1 | AT2G27110 | 29.758 | 289 | 195 | 3 | 149 | 435 | 36 | 318 | 2.28e-38 | 148 |
| MS.gene015328.t1 | AT1G10240 | 26.895 | 409 | 264 | 12 | 21 | 418 | 95 | 479 | 3.34e-34 | 136 |
| MS.gene015328.t1 | AT1G10240 | 26.895 | 409 | 264 | 12 | 21 | 418 | 95 | 479 | 3.34e-34 | 136 |
| MS.gene015328.t1 | AT5G18960 | 25.170 | 441 | 260 | 11 | 20 | 457 | 256 | 629 | 7.93e-34 | 135 |
| MS.gene015328.t1 | AT5G18960 | 25.170 | 441 | 260 | 11 | 20 | 457 | 256 | 629 | 7.93e-34 | 135 |
| MS.gene015328.t1 | AT3G22170 | 22.072 | 444 | 309 | 8 | 5 | 443 | 100 | 511 | 2.32e-33 | 134 |
| MS.gene015328.t1 | AT3G22170 | 22.072 | 444 | 309 | 8 | 5 | 443 | 100 | 511 | 2.32e-33 | 134 |
| MS.gene015328.t1 | AT5G28530 | 26.214 | 412 | 265 | 11 | 5 | 398 | 84 | 474 | 7.67e-33 | 132 |
| MS.gene015328.t1 | AT5G28530 | 26.214 | 412 | 265 | 11 | 5 | 398 | 84 | 474 | 7.67e-33 | 132 |
| MS.gene015328.t1 | AT5G28530 | 26.214 | 412 | 265 | 11 | 5 | 398 | 84 | 474 | 1.01e-32 | 132 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 68 | 434 | 8.74e-30 | 123 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 27 | 393 | 9.35e-30 | 123 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 27 | 393 | 1.09e-29 | 123 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 68 | 434 | 1.16e-29 | 123 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 68 | 434 | 1.16e-29 | 123 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 68 | 434 | 1.16e-29 | 123 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 68 | 434 | 1.19e-29 | 123 |
| MS.gene015328.t1 | AT2G32250 | 24.074 | 432 | 258 | 9 | 5 | 431 | 68 | 434 | 1.19e-29 | 123 |
| MS.gene015328.t1 | AT1G80010 | 25.688 | 436 | 284 | 14 | 4 | 429 | 129 | 534 | 2.05e-29 | 122 |
| MS.gene015328.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 106 | 369 | 1.78e-28 | 119 |
| MS.gene015328.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 1.99e-28 | 119 |
| MS.gene015328.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.13e-28 | 119 |
| MS.gene015328.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.13e-28 | 119 |
| MS.gene015328.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 177 | 440 | 2.44e-28 | 119 |
| MS.gene015328.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.99e-28 | 118 |
| MS.gene015328.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 155 | 419 | 163 | 426 | 2.99e-28 | 118 |
| MS.gene015328.t1 | AT1G52520 | 22.517 | 453 | 312 | 10 | 2 | 448 | 112 | 531 | 1.45e-26 | 113 |
| MS.gene015328.t1 | AT5G28530 | 22.637 | 402 | 229 | 14 | 5 | 398 | 84 | 411 | 4.26e-13 | 72.0 |
| MS.gene015328.t1 | AT5G28530 | 22.637 | 402 | 229 | 14 | 5 | 398 | 84 | 411 | 4.47e-13 | 72.0 |
Find 64 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5.4:+8007337 | MS.gene015328:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.4:+8007028 | MS.gene015328:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.4:+8007295 | MS.gene015328:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.4:+8006244 | MS.gene015328:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5.4:+8006747 | MS.gene015328:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.4:+8006780 | MS.gene015328:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.4:-8006874 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.4:+8007069 | MS.gene015328:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.4:-8006892 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.4:-8006294 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.4:+8007169 | MS.gene015328:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.4:+8006301 | MS.gene015328:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.4:+8006293 | MS.gene015328:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.4:+8007168 | MS.gene015328:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.4:-8005764 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.4:+8005941 | MS.gene015328:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.4:+8005823 | MS.gene015328:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5.4:-8006885 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.4:+8005806 | MS.gene015328:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 5.4:+8005689 | MS.gene015328:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.4:+8006959 | MS.gene015328:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.4:+8007123 | MS.gene015328:CDS |
| GCTTTAACAAATTCTAAAGC+TGG | 0.461901 | 5.4:+8005971 | MS.gene015328:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.4:+8005655 | MS.gene015328:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.4:+8006016 | MS.gene015328:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.4:-8005800 | None:intergenic |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.4:+8006084 | MS.gene015328:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5.4:-8005911 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.4:+8005649 | MS.gene015328:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.4:-8006760 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.4:+8007070 | MS.gene015328:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.4:+8006097 | MS.gene015328:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.4:+8007309 | MS.gene015328:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.4:-8007389 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.4:+8006003 | MS.gene015328:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.4:-8006189 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5.4:-8005899 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.4:+8007156 | MS.gene015328:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.4:-8006055 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5.4:+8007328 | MS.gene015328:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.4:+8007174 | MS.gene015328:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 5.4:+8005859 | MS.gene015328:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.4:-8007277 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5.4:+8005700 | MS.gene015328:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.4:-8007272 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.4:+8005701 | MS.gene015328:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.4:-8006905 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.4:+8006151 | MS.gene015328:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.4:+8006019 | MS.gene015328:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 5.4:+8005858 | MS.gene015328:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.4:-8007390 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.4:+8006010 | MS.gene015328:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.4:+8006891 | MS.gene015328:CDS |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.4:+8006090 | MS.gene015328:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.4:+8006004 | MS.gene015328:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.4:+8006093 | MS.gene015328:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.4:+8007387 | MS.gene015328:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.4:-8005749 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.4:-8007125 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.4:+8006024 | MS.gene015328:CDS |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.4:+8006960 | MS.gene015328:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.4:+8007310 | MS.gene015328:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.4:-8007860 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 5.4:+8006887 | MS.gene015328:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCTATAAGATATATAAG+TGG | + | chr5.4:8005858-8005877 | MS.gene015328:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.4:8005649-8005668 | MS.gene015328:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | + | chr5.4:8005859-8005878 | MS.gene015328:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5.4:8006476-8006495 | MS.gene015328:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr5.4:8007098-8007117 | MS.gene015328:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr5.4:8006448-8006467 | MS.gene015328:intron | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr5.4:8006936-8006955 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.4:8005655-8005674 | MS.gene015328:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr5.4:8006293-8006312 | MS.gene015328:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr5.4:8006319-8006338 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr5.4:8007469-8007488 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr5.4:8007295-8007314 | MS.gene015328:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.4:8006366-8006385 | MS.gene015328:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5.4:8007434-8007453 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr5.4:8007469-8007488 | MS.gene015328:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr5.4:8007028-8007047 | MS.gene015328:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.4:8006468-8006487 | MS.gene015328:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.4:8006724-8006743 | MS.gene015328:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr5.4:8007570-8007589 | MS.gene015328:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.4:8005645-8005664 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5.4:8006475-8006494 | MS.gene015328:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr5.4:8007102-8007121 | MS.gene015328:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr5.4:8007571-8007590 | MS.gene015328:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr5.4:8006539-8006558 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.4:8005701-8005720 | MS.gene015328:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr5.4:8006301-8006320 | MS.gene015328:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr5.4:8007069-8007088 | MS.gene015328:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr5.4:8006004-8006023 | MS.gene015328:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr5.4:8007070-8007089 | MS.gene015328:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr5.4:8006763-8006782 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr5.4:8007642-8007661 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr5.4:8006244-8006263 | MS.gene015328:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr5.4:8005689-8005708 | MS.gene015328:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr5.4:8007474-8007493 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr5.4:8006405-8006424 | MS.gene015328:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr5.4:8007472-8007491 | MS.gene015328:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr5.4:8006984-8007003 | MS.gene015328:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr5.4:8007643-8007662 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr5.4:8006297-8006316 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.4:8005790-8005809 | MS.gene015328:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr5.4:8007280-8007299 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.4:8005700-8005719 | MS.gene015328:CDS | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr5.4:8006172-8006191 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr5.4:8007414-8007433 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.4:8006058-8006077 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr5.4:8006683-8006702 | MS.gene015328:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5.4:8005902-8005921 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.4:8005823-8005842 | MS.gene015328:CDS | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr5.4:8007529-8007548 | MS.gene015328:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.4:8006048-8006067 | MS.gene015328:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5.4:8006877-8006896 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5.4:8006927-8006946 | MS.gene015328:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr5.4:8007754-8007773 | MS.gene015328:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr5.4:8007654-8007673 | MS.gene015328:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.4:8006380-8006399 | MS.gene015328:intron | 30.0% |
| !! | GCTTTAACAAATTCTAAAGC+TGG | + | chr5.4:8005971-8005990 | MS.gene015328:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr5.4:8007655-8007674 | MS.gene015328:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr5.4:8007751-8007770 | MS.gene015328:intron | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | + | chr5.4:8006206-8006225 | MS.gene015328:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | + | chr5.4:8006207-8006226 | MS.gene015328:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr5.4:8007819-8007838 | MS.gene015328:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5.4:8006939-8006958 | MS.gene015328:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr5.4:8007309-8007328 | MS.gene015328:CDS | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | - | chr5.4:8006506-8006525 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr5.4:8007310-8007329 | MS.gene015328:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.4:8005941-8005960 | MS.gene015328:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr5.4:8007644-8007663 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.4:8005789-8005808 | MS.gene015328:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | + | chr5.4:8007156-8007175 | MS.gene015328:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.4:8005784-8005803 | MS.gene015328:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr5.4:8006003-8006022 | MS.gene015328:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.4:8005726-8005745 | MS.gene015328:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr5.4:8006084-8006103 | MS.gene015328:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | - | chr5.4:8006515-8006534 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr5.4:8005767-8005786 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.4:8006780-8006799 | MS.gene015328:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr5.4:8007592-8007611 | MS.gene015328:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5.4:8007239-8007258 | MS.gene015328:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5.4:8006386-8006405 | MS.gene015328:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr5.4:8007112-8007131 | MS.gene015328:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5.4:8006952-8006971 | MS.gene015328:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr5.4:8007821-8007840 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr5.4:8007169-8007188 | MS.gene015328:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr5.4:8007761-8007780 | MS.gene015328:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.4:8006823-8006842 | MS.gene015328:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr5.4:8007822-8007841 | MS.gene015328:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr5.4:8007275-8007294 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr5.4:8006633-8006652 | None:intergenic | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr5.4:8007486-8007505 | MS.gene015328:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr5.4:8007718-8007737 | MS.gene015328:intron | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | + | chr5.4:8006519-8006538 | MS.gene015328:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr5.4:8007717-8007736 | MS.gene015328:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr5.4:8007485-8007504 | MS.gene015328:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr5.4:8006887-8006906 | MS.gene015328:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr5.4:8006629-8006648 | MS.gene015328:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | - | chr5.4:8006218-8006237 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr5.4:8006888-8006907 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | + | chr5.4:8006747-8006766 | MS.gene015328:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr5.4:8007624-8007643 | MS.gene015328:intron | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5.4:8007337-8007356 | MS.gene015328:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr5.4:8007764-8007783 | MS.gene015328:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr5.4:8007168-8007187 | MS.gene015328:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.4:8005740-8005759 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5.4:8006010-8006029 | MS.gene015328:CDS | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr5.4:8006093-8006112 | MS.gene015328:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr5.4:8006151-8006170 | MS.gene015328:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr5.4:8005752-8005771 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | - | chr5.4:8007128-8007147 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr5.4:8007387-8007406 | MS.gene015328:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr5.4:8007739-8007758 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | - | chr5.4:8005914-8005933 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.4:8005794-8005813 | MS.gene015328:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr5.4:8006090-8006109 | MS.gene015328:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | + | chr5.4:8007328-8007347 | MS.gene015328:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr5.4:8007637-8007656 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr5.4:8007719-8007738 | MS.gene015328:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr5.4:8006192-8006211 | None:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr5.4:8005803-8005822 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr5.4:8007191-8007210 | MS.gene015328:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr5.4:8007174-8007193 | MS.gene015328:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.4:8005806-8005825 | MS.gene015328:CDS | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr5.4:8006214-8006233 | MS.gene015328:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr5.4:8006895-8006914 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr5.4:8006891-8006910 | MS.gene015328:CDS | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | + | chr5.4:8007674-8007693 | MS.gene015328:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr5.4:8007392-8007411 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | + | chr5.4:8007123-8007142 | MS.gene015328:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | + | chr5.4:8007675-8007694 | MS.gene015328:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr5.4:8006960-8006979 | MS.gene015328:CDS | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | + | chr5.4:8006495-8006514 | MS.gene015328:intron | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr5.4:8006959-8006978 | MS.gene015328:CDS | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5.4:8006016-8006035 | MS.gene015328:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr5.4:8006908-8006927 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr5.4:8007393-8007412 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.4:8006097-8006116 | MS.gene015328:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5.4:8006019-8006038 | MS.gene015328:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5.4:8006024-8006043 | MS.gene015328:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 8005632 | 8007878 | 8005632 | ID=MS.gene015328 |
| chr5.4 | mRNA | 8005632 | 8007878 | 8005632 | ID=MS.gene015328.t1;Parent=MS.gene015328 |
| chr5.4 | exon | 8005632 | 8006322 | 8005632 | ID=MS.gene015328.t1.exon1;Parent=MS.gene015328.t1 |
| chr5.4 | CDS | 8005632 | 8006322 | 8005632 | ID=cds.MS.gene015328.t1;Parent=MS.gene015328.t1 |
| chr5.4 | exon | 8006757 | 8007408 | 8006757 | ID=MS.gene015328.t1.exon2;Parent=MS.gene015328.t1 |
| chr5.4 | CDS | 8006757 | 8007408 | 8006757 | ID=cds.MS.gene015328.t1;Parent=MS.gene015328.t1 |
| chr5.4 | exon | 8007839 | 8007878 | 8007839 | ID=MS.gene015328.t1.exon3;Parent=MS.gene015328.t1 |
| chr5.4 | CDS | 8007839 | 8007878 | 8007839 | ID=cds.MS.gene015328.t1;Parent=MS.gene015328.t1 |
| Gene Sequence |
| Protein sequence |
