Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01553.t1 | XP_003593769.1 | 96.3 | 216 | 8 | 0 | 1 | 216 | 1 | 216 | 9.30E-109 | 402.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01553.t1 | Q9S7Y1 | 47.1 | 136 | 64 | 4 | 56 | 184 | 164 | 298 | 1.8e-20 | 100.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01553.t1 | G7ILJ0 | 96.3 | 216 | 8 | 0 | 1 | 216 | 1 | 216 | 6.7e-109 | 402.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene01553.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01553.t1 | MTR_2g015890 | 96.296 | 216 | 8 | 0 | 1 | 216 | 1 | 216 | 1.08e-154 | 427 |
MS.gene01553.t1 | MTR_2g015890 | 81.250 | 256 | 8 | 1 | 1 | 216 | 1 | 256 | 1.37e-145 | 406 |
MS.gene01553.t1 | MTR_2g015890 | 94.068 | 118 | 7 | 0 | 99 | 216 | 1 | 118 | 4.09e-78 | 230 |
MS.gene01553.t1 | MTR_2g015890 | 70.253 | 158 | 7 | 1 | 99 | 216 | 1 | 158 | 1.51e-69 | 209 |
MS.gene01553.t1 | MTR_4g087920 | 55.263 | 190 | 77 | 4 | 3 | 184 | 10 | 199 | 9.03e-48 | 158 |
MS.gene01553.t1 | MTR_4g079760 | 49.367 | 158 | 76 | 2 | 19 | 173 | 21 | 177 | 3.71e-38 | 133 |
MS.gene01553.t1 | MTR_2g091190 | 50.000 | 150 | 70 | 2 | 29 | 175 | 23 | 170 | 8.84e-36 | 126 |
MS.gene01553.t1 | MTR_3g070970 | 43.284 | 134 | 60 | 3 | 67 | 184 | 73 | 206 | 1.50e-23 | 95.1 |
MS.gene01553.t1 | MTR_1g093750 | 49.153 | 118 | 53 | 1 | 63 | 173 | 154 | 271 | 4.18e-22 | 92.4 |
MS.gene01553.t1 | MTR_5g032375 | 36.508 | 126 | 66 | 3 | 56 | 168 | 34 | 158 | 3.35e-14 | 68.9 |
MS.gene01553.t1 | MTR_5g066080 | 39.535 | 129 | 51 | 2 | 67 | 168 | 37 | 165 | 2.47e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01553.t1 | AT3G56770 | 47.458 | 118 | 56 | 3 | 62 | 174 | 40 | 156 | 1.44e-26 | 102 |
MS.gene01553.t1 | AT2G40200 | 45.600 | 125 | 59 | 2 | 69 | 184 | 65 | 189 | 2.51e-26 | 102 |
MS.gene01553.t1 | AT1G68810 | 47.059 | 136 | 64 | 4 | 56 | 184 | 164 | 298 | 1.37e-22 | 94.4 |
MS.gene01553.t1 | AT2G41130 | 36.686 | 169 | 96 | 3 | 17 | 174 | 11 | 179 | 1.67e-20 | 87.0 |
MS.gene01553.t1 | AT3G25710 | 41.791 | 134 | 72 | 3 | 56 | 184 | 122 | 254 | 1.77e-19 | 85.5 |
MS.gene01553.t1 | AT4G38070 | 32.710 | 107 | 68 | 2 | 66 | 172 | 91 | 193 | 2.94e-12 | 64.3 |
Find 37 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTACTAGCTGAGGTTATT+AGG | 0.226217 | 2.2:+67576040 | MS.gene01553:CDS |
ATCAACAAACTCATTGGTTT+TGG | 0.255474 | 2.2:+67574379 | MS.gene01553:CDS |
CTTAGATCAGTTAGAAGTTC+TGG | 0.280659 | 2.2:-67576204 | None:intergenic |
AAGTCCCCTCCAATAATTAA+TGG | 0.304566 | 2.2:+67574425 | MS.gene01553:CDS |
AATGCCACTTCATATAGATT+TGG | 0.335342 | 2.2:+67574323 | MS.gene01553:CDS |
TAGTGGCTCTGAAGAATCAT+AGG | 0.340919 | 2.2:+67574480 | MS.gene01553:CDS |
TGATGCTAACAAAACTTTAG+TGG | 0.343142 | 2.2:+67574463 | MS.gene01553:CDS |
AAGAGAAGAAACAGAATTAA+TGG | 0.350077 | 2.2:+67574515 | MS.gene01553:CDS |
TGATAAACTTCAACTACAAT+TGG | 0.375139 | 2.2:+67576236 | MS.gene01553:CDS |
AAAGTTGAACCATGTGAAAA+TGG | 0.387199 | 2.2:+67576138 | MS.gene01553:CDS |
TTCACTTCATCATCATCTGT+TGG | 0.414183 | 2.2:-67576117 | None:intergenic |
GTTTGTATCAACAAACTCAT+TGG | 0.426459 | 2.2:+67574373 | MS.gene01553:CDS |
TTCTCTCCATTAATTATTGG+AGG | 0.433494 | 2.2:-67574431 | None:intergenic |
CCAGGAACTGAGTTCTGTAC+TGG | 0.489161 | 2.2:+67576374 | MS.gene01553:intron |
ACTGAGTTCTGTACTGGAAA+GGG | 0.489265 | 2.2:+67576380 | MS.gene01553:CDS |
CTCTCCATTAATTATTGGAG+GGG | 0.498785 | 2.2:-67574429 | None:intergenic |
TATTATACCTTTGGAGAGGA+GGG | 0.509382 | 2.2:-67574566 | None:intergenic |
ATTATAGCTCTGATATTTCG+AGG | 0.509996 | 2.2:+67574291 | MS.gene01553:CDS |
CAAATGAGACTTCAAGAGGT+GGG | 0.540083 | 2.2:+67574351 | MS.gene01553:CDS |
TCTCTCCATTAATTATTGGA+GGG | 0.544195 | 2.2:-67574430 | None:intergenic |
TTATTATACCTTTGGAGAGG+AGG | 0.544800 | 2.2:-67574567 | None:intergenic |
AACTGAGTTCTGTACTGGAA+AGG | 0.553572 | 2.2:+67576379 | MS.gene01553:CDS |
CAAAGCAACTTTACTAGCTG+AGG | 0.560860 | 2.2:+67576032 | MS.gene01553:CDS |
AGTGGCTCTGAAGAATCATA+GGG | 0.564496 | 2.2:+67574481 | MS.gene01553:CDS |
AATGCAGATGAAGCAAGTAA+AGG | 0.565648 | 2.2:+67576084 | MS.gene01553:CDS |
ACTTGTTCCCTCCTCTCCAA+AGG | 0.568287 | 2.2:+67574559 | MS.gene01553:CDS |
GGAAAGGGTTTCTACCTCGA+TGG | 0.569167 | 2.2:+67576395 | MS.gene01553:CDS |
AGCACCAAATCTATATGAAG+TGG | 0.573695 | 2.2:-67574327 | None:intergenic |
TCAAATGAGACTTCAAGAGG+TGG | 0.607431 | 2.2:+67574350 | MS.gene01553:CDS |
AGATTATTATACCTTTGGAG+AGG | 0.615783 | 2.2:-67574570 | None:intergenic |
ATCAACAAGAGCAAAACTCA+TGG | 0.629280 | 2.2:-67576482 | None:intergenic |
GTTGAACCATGTGAAAATGG+TGG | 0.637388 | 2.2:+67576141 | MS.gene01553:CDS |
TGCATCTGTTTGCAAAGACG+TGG | 0.639661 | 2.2:-67576435 | None:intergenic |
GAGAGGAGGGAACAAGTGCA+CGG | 0.657365 | 2.2:-67574553 | None:intergenic |
GCTTCAAATGAGACTTCAAG+AGG | 0.660687 | 2.2:+67574347 | MS.gene01553:CDS |
AGAATCATAGGGAAGCAGAG+AGG | 0.725124 | 2.2:+67574492 | MS.gene01553:CDS |
TCTTAACGAGTAATCCATCG+AGG | 0.765808 | 2.2:-67576409 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTAAGGATTATTAAA+TGG | - | chr2.2:67575770-67575789 | None:intergenic | 10.0% |
!! | TATAAAAAATACGAAAAGAA+AGG | - | chr2.2:67574597-67574616 | None:intergenic | 15.0% |
!!! | ACTTCGTTATATTTTTTTAA+GGG | + | chr2.2:67574646-67574665 | MS.gene01553:intron | 15.0% |
!!! | TAGTATTAATTTATTTGTTG+TGG | + | chr2.2:67575688-67575707 | MS.gene01553:intron | 15.0% |
!!! | TTATAATGTTTAACTTTTGT+TGG | - | chr2.2:67575320-67575339 | None:intergenic | 15.0% |
!!! | TTGTTTTTAAAATATCTTTG+TGG | + | chr2.2:67574689-67574708 | MS.gene01553:intron | 15.0% |
!! | AAACTGTAAAAAAGTTCAAT+TGG | - | chr2.2:67574758-67574777 | None:intergenic | 20.0% |
!! | ACTATAATGTAACATCATAT+TGG | + | chr2.2:67575433-67575452 | MS.gene01553:intron | 20.0% |
!! | CTGAAAAAATACATTTACTT+AGG | + | chr2.2:67575000-67575019 | MS.gene01553:intron | 20.0% |
!! | TATGTACATACTGTTATTAA+TGG | + | chr2.2:67575983-67576002 | MS.gene01553:intron | 20.0% |
!! | TTTAAGGATTATTAAATGGT+TGG | - | chr2.2:67575766-67575785 | None:intergenic | 20.0% |
!!! | ATTAATTTATTTGTTGTGGT+GGG | + | chr2.2:67575692-67575711 | MS.gene01553:intron | 20.0% |
!!! | ATTGTCATCTGATTTTAAAA+AGG | + | chr2.2:67574804-67574823 | MS.gene01553:intron | 20.0% |
!!! | CACTTCGTTATATTTTTTTA+AGG | + | chr2.2:67574645-67574664 | MS.gene01553:intron | 20.0% |
!!! | TATTAATTTATTTGTTGTGG+TGG | + | chr2.2:67575691-67575710 | MS.gene01553:intron | 20.0% |
!!! | TTTTTCTCTCCATTAATTAT+TGG | - | chr2.2:67574437-67574456 | None:intergenic | 20.0% |
! | AAATGAAACAACCTTAGTTT+GGG | - | chr2.2:67575496-67575515 | None:intergenic | 25.0% |
! | AACATATGATTCTTAGTTGT+GGG | + | chr2.2:67575542-67575561 | MS.gene01553:intron | 25.0% |
! | AAGAGAAGAAACAGAATTAA+TGG | + | chr2.2:67574515-67574534 | MS.gene01553:CDS | 25.0% |
! | AAGGAAGATTATTATACCTT+TGG | - | chr2.2:67574578-67574597 | None:intergenic | 25.0% |
! | ATTCCTAATTGCAACTTAAT+TGG | - | chr2.2:67575195-67575214 | None:intergenic | 25.0% |
! | ATTGAACAATGTCAACTTAT+TGG | + | chr2.2:67576339-67576358 | MS.gene01553:intron | 25.0% |
! | CTGATTTCTAATATGTGTTA+GGG | + | chr2.2:67575846-67575865 | MS.gene01553:intron | 25.0% |
! | TAAATGAAACAACCTTAGTT+TGG | - | chr2.2:67575497-67575516 | None:intergenic | 25.0% |
! | TAACATATGATTCTTAGTTG+TGG | + | chr2.2:67575541-67575560 | MS.gene01553:intron | 25.0% |
! | TATGTGTTAGGGTTTAATAT+CGG | + | chr2.2:67575857-67575876 | MS.gene01553:intron | 25.0% |
! | TCTGATTTCTAATATGTGTT+AGG | + | chr2.2:67575845-67575864 | MS.gene01553:intron | 25.0% |
! | TGATAAACTTCAACTACAAT+TGG | + | chr2.2:67576236-67576255 | MS.gene01553:CDS | 25.0% |
AAAGTTGAACCATGTGAAAA+TGG | + | chr2.2:67576138-67576157 | MS.gene01553:CDS | 30.0% | |
AACTTCAACTACAATTGGTA+AGG | + | chr2.2:67576241-67576260 | MS.gene01553:intron | 30.0% | |
AAGGGAAGAAATATCAACTT+TGG | + | chr2.2:67576260-67576279 | MS.gene01553:intron | 30.0% | |
AAGTCAACTATATAAGGTTG+TGG | + | chr2.2:67575386-67575405 | MS.gene01553:intron | 30.0% | |
AAGTTCAATTGGTAAACCAT+CGG | - | chr2.2:67574747-67574766 | None:intergenic | 30.0% | |
ACACAATGATCGAATATGAT+TGG | - | chr2.2:67574625-67574644 | None:intergenic | 30.0% | |
ACTTCAACTACAATTGGTAA+GGG | + | chr2.2:67576242-67576261 | MS.gene01553:intron | 30.0% | |
AGGGAAGAAATATCAACTTT+GGG | + | chr2.2:67576261-67576280 | MS.gene01553:intron | 30.0% | |
ATTGAAATTCATGCAGCATT+GGG | - | chr2.2:67575112-67575131 | None:intergenic | 30.0% | |
ATTGATGGAAATACAAGCTA+TGG | + | chr2.2:67575057-67575076 | MS.gene01553:intron | 30.0% | |
GTTTGTATCAACAAACTCAT+TGG | + | chr2.2:67574373-67574392 | MS.gene01553:CDS | 30.0% | |
TATTGGAAATAATGTTCACC+AGG | + | chr2.2:67576356-67576375 | MS.gene01553:intron | 30.0% | |
TCTCTCCATTAATTATTGGA+GGG | - | chr2.2:67574433-67574452 | None:intergenic | 30.0% | |
TGATGCTAACAAAACTTTAG+TGG | + | chr2.2:67574463-67574482 | MS.gene01553:CDS | 30.0% | |
TTCTCTCCATTAATTATTGG+AGG | - | chr2.2:67574434-67574453 | None:intergenic | 30.0% | |
TTGATGGAAATACAAGCTAT+GGG | + | chr2.2:67575058-67575077 | MS.gene01553:intron | 30.0% | |
! | AATGCCACTTCATATAGATT+TGG | + | chr2.2:67574323-67574342 | MS.gene01553:CDS | 30.0% |
! | ACACCAATTAAGTTGCAATT+AGG | + | chr2.2:67575189-67575208 | MS.gene01553:intron | 30.0% |
! | AGATTATTATACCTTTGGAG+AGG | - | chr2.2:67574573-67574592 | None:intergenic | 30.0% |
! | ATAAACATGTTTTACACCGA+TGG | + | chr2.2:67574728-67574747 | MS.gene01553:intron | 30.0% |
! | CCTTATATAGTTGACTTTAG+CGG | - | chr2.2:67575383-67575402 | None:intergenic | 30.0% |
! | TTGACTGGTCAAATGTATAT+GGG | + | chr2.2:67575355-67575374 | MS.gene01553:intron | 30.0% |
! | TTTTGCAGATTTATCTTCGA+TGG | + | chr2.2:67575469-67575488 | MS.gene01553:intron | 30.0% |
!! | ATTATAGCTCTGATATTTCG+AGG | + | chr2.2:67574291-67574310 | MS.gene01553:CDS | 30.0% |
!! | CAGAAAGAATGATTTGTTGA+GGG | - | chr2.2:67575601-67575620 | None:intergenic | 30.0% |
!! | TCAGAAAGAATGATTTGTTG+AGG | - | chr2.2:67575602-67575621 | None:intergenic | 30.0% |
!! | TCTGATTTTAAAAAGGCTAG+CGG | + | chr2.2:67574811-67574830 | MS.gene01553:intron | 30.0% |
!! | TGTTTAACTTTTGTTGGTGA+TGG | - | chr2.2:67575314-67575333 | None:intergenic | 30.0% |
!!! | ATCAACAAACTCATTGGTTT+TGG | + | chr2.2:67574379-67574398 | MS.gene01553:CDS | 30.0% |
AAGTCCCCTCCAATAATTAA+TGG | + | chr2.2:67574425-67574444 | MS.gene01553:CDS | 35.0% | |
AATGCAGATGAAGCAAGTAA+AGG | + | chr2.2:67576084-67576103 | MS.gene01553:CDS | 35.0% | |
ACAGAGACATTTGATATGCT+CGG | - | chr2.2:67574890-67574909 | None:intergenic | 35.0% | |
AGCACCAAATCTATATGAAG+TGG | - | chr2.2:67574330-67574349 | None:intergenic | 35.0% | |
AGCTGAAGTTTGAAGATTGA+TGG | + | chr2.2:67575042-67575061 | MS.gene01553:intron | 35.0% | |
CATATACATTTGACCAGTCA+AGG | - | chr2.2:67575356-67575375 | None:intergenic | 35.0% | |
CATTGAAATTCATGCAGCAT+TGG | - | chr2.2:67575113-67575132 | None:intergenic | 35.0% | |
CCGCTAAAGTCAACTATATA+AGG | + | chr2.2:67575380-67575399 | MS.gene01553:intron | 35.0% | |
CTCTCCATTAATTATTGGAG+GGG | - | chr2.2:67574432-67574451 | None:intergenic | 35.0% | |
CTGTTATTAATGGTAGCTGA+TGG | + | chr2.2:67575993-67576012 | MS.gene01553:intron | 35.0% | |
CTTAGATCAGTTAGAAGTTC+TGG | - | chr2.2:67576207-67576226 | None:intergenic | 35.0% | |
CTTTACTAGCTGAGGTTATT+AGG | + | chr2.2:67576040-67576059 | MS.gene01553:CDS | 35.0% | |
GCTGATGGTATTCTTATAGA+TGG | + | chr2.2:67576008-67576027 | MS.gene01553:intron | 35.0% | |
TAACTTTACCTGACCAATGA+AGG | + | chr2.2:67575730-67575749 | MS.gene01553:intron | 35.0% | |
TATTAATAGCTGTCTACAGC+TGG | + | chr2.2:67575630-67575649 | MS.gene01553:intron | 35.0% | |
TCATTCAAAACGTAGGTCAT+AGG | - | chr2.2:67575817-67575836 | None:intergenic | 35.0% | |
TGGTTGCTTAATTCCTTCAT+TGG | - | chr2.2:67575746-67575765 | None:intergenic | 35.0% | |
TTAAATTAAGGGTCCTTGAC+TGG | + | chr2.2:67575340-67575359 | MS.gene01553:intron | 35.0% | |
TTCACTTCATCATCATCTGT+TGG | - | chr2.2:67576120-67576139 | None:intergenic | 35.0% | |
! | AAATATCAACTTTGGGAGAC+AGG | + | chr2.2:67576268-67576287 | MS.gene01553:intron | 35.0% |
! | AATATCAACTTTGGGAGACA+GGG | + | chr2.2:67576269-67576288 | MS.gene01553:intron | 35.0% |
! | AATGATCCACCATTTTCACA+TGG | - | chr2.2:67576150-67576169 | None:intergenic | 35.0% |
! | CTTGACTGGTCAAATGTATA+TGG | + | chr2.2:67575354-67575373 | MS.gene01553:intron | 35.0% |
! | TATTATACCTTTGGAGAGGA+GGG | - | chr2.2:67574569-67574588 | None:intergenic | 35.0% |
! | TTATTATACCTTTGGAGAGG+AGG | - | chr2.2:67574570-67574589 | None:intergenic | 35.0% |
!! | GTCATTTACGATGTCGATTT+CGG | + | chr2.2:67575937-67575956 | MS.gene01553:intron | 35.0% |
!! | TGACCTACGTTTTGAATGAA+AGG | + | chr2.2:67575818-67575837 | MS.gene01553:intron | 35.0% |
!!! | TTGGTTTTGGATAGTGAGAA+AGG | + | chr2.2:67574392-67574411 | MS.gene01553:CDS | 35.0% |
AACTGAGTTCTGTACTGGAA+AGG | + | chr2.2:67576379-67576398 | MS.gene01553:CDS | 40.0% | |
ACATCACCAGCTGAATATTC+TGG | + | chr2.2:67575575-67575594 | MS.gene01553:intron | 40.0% | |
ACGCCTTTCATTCAAAACGT+AGG | - | chr2.2:67575824-67575843 | None:intergenic | 40.0% | |
ACTGAGTTCTGTACTGGAAA+GGG | + | chr2.2:67576380-67576399 | MS.gene01553:CDS | 40.0% | |
CAAAGCAACTTTACTAGCTG+AGG | + | chr2.2:67576032-67576051 | MS.gene01553:CDS | 40.0% | |
CAAATGAGACTTCAAGAGGT+GGG | + | chr2.2:67574351-67574370 | MS.gene01553:CDS | 40.0% | |
CAGAGACATTTGATATGCTC+GGG | - | chr2.2:67574889-67574908 | None:intergenic | 40.0% | |
GCTTAATTCCTTCATTGGTC+AGG | - | chr2.2:67575741-67575760 | None:intergenic | 40.0% | |
GCTTCAAATGAGACTTCAAG+AGG | + | chr2.2:67574347-67574366 | MS.gene01553:CDS | 40.0% | |
GTTGAACCATGTGAAAATGG+TGG | + | chr2.2:67576141-67576160 | MS.gene01553:CDS | 40.0% | |
TCAAATGAGACTTCAAGAGG+TGG | + | chr2.2:67574350-67574369 | MS.gene01553:CDS | 40.0% | |
TCTTAACGAGTAATCCATCG+AGG | - | chr2.2:67576412-67576431 | None:intergenic | 40.0% | |
!! | ACAATAAGTGCTGAGAAGCA+AGG | + | chr2.2:67574842-67574861 | MS.gene01553:intron | 40.0% |
!! | AGTGGCTCTGAAGAATCATA+GGG | + | chr2.2:67574481-67574500 | MS.gene01553:CDS | 40.0% |
!! | TAGTGGCTCTGAAGAATCAT+AGG | + | chr2.2:67574480-67574499 | MS.gene01553:CDS | 40.0% |
AGAATCATAGGGAAGCAGAG+AGG | + | chr2.2:67574492-67574511 | MS.gene01553:CDS | 45.0% | |
TACAAGCTATGGGACAGAAC+TGG | + | chr2.2:67575068-67575087 | MS.gene01553:intron | 45.0% | |
TCTTCGATGGTCCCAAACTA+AGG | + | chr2.2:67575482-67575501 | MS.gene01553:intron | 45.0% | |
TGCATCTGTTTGCAAAGACG+TGG | - | chr2.2:67576438-67576457 | None:intergenic | 45.0% | |
!! | AAAAAATAAATAAATAAGAT+AGG | + | chr2.2:67575783-67575802 | MS.gene01553:intron | 5.0% |
!! | AAACATTATAATTAAATTAA+GGG | + | chr2.2:67575329-67575348 | MS.gene01553:intron | 5.0% |
!! | TAAACATTATAATTAAATTA+AGG | + | chr2.2:67575328-67575347 | MS.gene01553:intron | 5.0% |
!!! | TCTTATTTATTTATTTTTTA+AGG | - | chr2.2:67575782-67575801 | None:intergenic | 5.0% |
ACTTGTTCCCTCCTCTCCAA+AGG | + | chr2.2:67574559-67574578 | MS.gene01553:CDS | 50.0% | |
CCAGGAACTGAGTTCTGTAC+TGG | + | chr2.2:67576374-67576393 | MS.gene01553:intron | 50.0% | |
CCAGTACAGAACTCAGTTCC+TGG | - | chr2.2:67576377-67576396 | None:intergenic | 50.0% | |
GGAAAGGGTTTCTACCTCGA+TGG | + | chr2.2:67576395-67576414 | MS.gene01553:CDS | 50.0% | |
TGAGGGCCAGAATATTCAGC+TGG | - | chr2.2:67575584-67575603 | None:intergenic | 50.0% | |
! | CAGCTGGTGATGTGAAGTGT+GGG | - | chr2.2:67575568-67575587 | None:intergenic | 50.0% |
! | TCAGCTGGTGATGTGAAGTG+TGG | - | chr2.2:67575569-67575588 | None:intergenic | 50.0% |
GAGAGGAGGGAACAAGTGCA+CGG | - | chr2.2:67574556-67574575 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 67574287 | 67576503 | 67574287 | ID=MS.gene01553 |
chr2.2 | mRNA | 67574287 | 67576503 | 67574287 | ID=MS.gene01553.t1;Parent=MS.gene01553 |
chr2.2 | exon | 67574287 | 67574580 | 67574287 | ID=MS.gene01553.t1.exon1;Parent=MS.gene01553.t1 |
chr2.2 | CDS | 67574287 | 67574580 | 67574287 | ID=cds.MS.gene01553.t1;Parent=MS.gene01553.t1 |
chr2.2 | exon | 67576027 | 67576257 | 67576027 | ID=MS.gene01553.t1.exon2;Parent=MS.gene01553.t1 |
chr2.2 | CDS | 67576027 | 67576257 | 67576027 | ID=cds.MS.gene01553.t1;Parent=MS.gene01553.t1 |
chr2.2 | exon | 67576378 | 67576503 | 67576378 | ID=MS.gene01553.t1.exon3;Parent=MS.gene01553.t1 |
chr2.2 | CDS | 67576378 | 67576503 | 67576378 | ID=cds.MS.gene01553.t1;Parent=MS.gene01553.t1 |
Gene Sequence |
Protein sequence |