AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015551

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015551.t1 MTR_5g010680 95.342 365 11 2 1 365 1 359 0.0 709
MS.gene015551.t1 MTR_0020s0020 45.745 376 119 14 5 353 7 324 2.86e-81 252
MS.gene015551.t1 MTR_1g100777 45.773 343 117 11 6 347 5 279 3.48e-74 232
MS.gene015551.t1 MTR_3g101870 46.087 230 113 4 1 219 1 230 5.97e-60 197
MS.gene015551.t1 MTR_5g017470 45.490 255 112 7 17 260 2 240 1.58e-59 194
MS.gene015551.t1 MTR_5g089170 44.248 226 101 4 14 239 15 215 7.67e-58 189
MS.gene015551.t1 MTR_7g091370 44.724 199 75 3 18 216 16 179 4.47e-48 162
MS.gene015551.t1 MTR_5g029680 72.000 100 26 1 22 121 30 127 8.65e-46 164
MS.gene015551.t1 MTR_6g043060 60.952 105 41 0 24 128 22 126 9.28e-43 151
MS.gene015551.t1 MTR_7g095680 65.957 94 32 0 22 115 47 140 4.52e-42 150
MS.gene015551.t1 MTR_1g071360 67.021 94 31 0 22 115 30 123 7.23e-42 149
MS.gene015551.t1 MTR_1g071360 67.021 94 31 0 22 115 27 120 1.30e-41 149
MS.gene015551.t1 MTR_8g087540 64.356 101 35 1 15 115 4 103 1.62e-41 150
MS.gene015551.t1 MTR_4g077970 63.265 98 36 0 24 121 12 109 2.27e-40 149
MS.gene015551.t1 MTR_4g088900 37.624 202 89 3 21 218 30 198 3.20e-40 141
MS.gene015551.t1 MTR_8g083100 60.577 104 41 0 25 128 23 126 6.51e-40 147
MS.gene015551.t1 MTR_1g061170 62.245 98 37 0 18 115 43 140 1.74e-39 145
MS.gene015551.t1 MTR_2g100680 57.944 107 45 0 22 128 29 135 1.51e-38 143
MS.gene015551.t1 MTR_3g104550 62.500 96 36 0 22 117 44 139 3.55e-38 140
MS.gene015551.t1 MTR_1g102860 63.830 94 34 0 22 115 38 131 1.56e-37 138
MS.gene015551.t1 MTR_2g100670 52.137 117 56 0 12 128 21 137 3.58e-37 136
MS.gene015551.t1 MTR_6g086805 59.184 98 40 0 18 115 5 102 5.03e-37 137
MS.gene015551.t1 MTR_2g017890 51.240 121 58 1 11 131 3 122 1.79e-36 136
MS.gene015551.t1 MTR_2g100670 52.137 117 56 0 12 128 129 245 3.86e-36 136
MS.gene015551.t1 MTR_8g105780 59.140 93 37 1 24 115 22 114 3.42e-32 124
MS.gene015551.t1 MTR_4g045757 54.054 74 32 2 11 83 2 74 1.69e-19 82.4
MS.gene015551.t1 MTR_5g047190 42.857 91 45 2 32 115 1 91 6.98e-19 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015551.t1 AT4G11660 49.573 351 134 7 16 355 51 369 3.28e-90 276
MS.gene015551.t1 AT5G62020 46.302 311 116 8 1 305 1 266 9.38e-82 251
MS.gene015551.t1 AT4G36990 50.242 207 86 3 12 218 2 191 1.12e-61 199
MS.gene015551.t1 AT1G46264 37.248 298 172 5 19 306 29 321 4.41e-59 195
MS.gene015551.t1 AT2G41690 40.930 215 110 2 4 218 20 217 1.47e-48 164
MS.gene015551.t1 AT1G32330 65.289 121 38 2 1 121 16 132 6.56e-47 166
MS.gene015551.t1 AT1G32330 65.289 121 38 2 1 121 16 132 6.82e-47 166
MS.gene015551.t1 AT4G17750 61.667 120 46 0 2 121 30 149 1.34e-46 166
MS.gene015551.t1 AT3G02990 66.355 107 34 2 9 115 10 114 8.90e-43 155
MS.gene015551.t1 AT3G22830 67.347 98 32 0 18 115 55 152 6.48e-42 151
MS.gene015551.t1 AT4G13980 60.000 110 38 1 25 128 24 133 2.94e-40 148
MS.gene015551.t1 AT5G16820 67.708 96 30 1 20 115 24 118 7.49e-40 147
MS.gene015551.t1 AT5G16820 67.708 96 30 1 20 115 24 118 7.49e-40 147
MS.gene015551.t1 AT5G43840 63.830 94 34 0 22 115 17 110 2.67e-39 141
MS.gene015551.t1 AT2G26150 61.702 94 36 0 22 115 42 135 4.91e-39 142
MS.gene015551.t1 AT2G26150 61.702 94 36 0 22 115 42 135 4.91e-39 142
MS.gene015551.t1 AT3G63350 58.763 97 40 0 18 114 22 118 1.25e-38 139
MS.gene015551.t1 AT5G03720 64.211 95 33 1 21 115 53 146 5.01e-38 141
MS.gene015551.t1 AT5G03720 64.211 95 33 1 21 115 53 146 5.01e-38 141
MS.gene015551.t1 AT3G51910 60.215 93 37 0 22 114 27 119 1.07e-37 137
MS.gene015551.t1 AT5G54070 60.638 94 37 0 21 114 68 161 1.07e-37 138
MS.gene015551.t1 AT3G24520 65.217 92 32 0 24 115 17 108 1.14e-36 135
MS.gene015551.t1 AT4G18880 58.824 119 46 2 17 135 9 124 3.02e-35 133
MS.gene015551.t1 AT5G45710 58.621 116 44 3 20 135 10 121 1.23e-34 130
MS.gene015551.t1 AT5G45710 58.621 116 44 3 20 135 10 121 1.23e-34 130
MS.gene015551.t1 AT1G67970 60.215 93 36 1 24 115 19 111 9.89e-34 129
MS.gene015551.t1 AT4G18870 45.263 95 49 1 20 111 139 233 1.07e-22 97.1
MS.gene015551.t1 AT4G18870 47.191 89 42 3 25 111 14 99 3.48e-20 90.1
MS.gene015551.t1 AT1G77570 39.326 89 49 3 25 109 27 114 2.99e-13 67.0

Find 91 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATGTTCCTAAGCTGTTT+GGG 0.212139 5.1:+4239110 MS.gene015551:CDS
TGTAACAGAAGGGAAAATTT+TGG 0.225929 5.1:+4238967 MS.gene015551:CDS
GCTAATGAAACATTCCTTAT+AGG 0.235307 5.1:-4238998 None:intergenic
GTGTTTATTTCTAGGGATTT+CGG 0.268121 5.1:+4238486 MS.gene015551:intron
AAGCTGTTTGGGGTTTCAAT+TGG 0.272470 5.1:+4239121 MS.gene015551:CDS
CCTCATGTTCCTAAGCTGTT+TGG 0.282001 5.1:+4239109 MS.gene015551:CDS
ATGATGAGTAATTATGCTTC+TGG 0.326687 5.1:+4238890 MS.gene015551:CDS
ATGGAACAAGCTTCATAGTT+TGG 0.332696 5.1:+4238282 MS.gene015551:CDS
CCGTTGATGATTTGGTTTCA+TGG 0.341139 5.1:+4238252 MS.gene015551:CDS
ATTGAGTTGACGAACGAAAC+TGG 0.358502 5.1:-4238363 None:intergenic
ATGGTGTCTCCAGCAACTTC+TGG 0.358649 5.1:+4238680 MS.gene015551:CDS
TGATTCTTCCGTTGATGATT+TGG 0.364300 5.1:+4238244 MS.gene015551:CDS
GAAGTTGATGGCGACATTAC+CGG 0.375837 5.1:+4238136 None:intergenic
AGCTGTTTGGGGTTTCAATT+GGG 0.377393 5.1:+4239122 MS.gene015551:CDS
AGCAACTTCTGGTGATGAAC+AGG 0.397317 5.1:+4238691 MS.gene015551:CDS
TTATTGTGTTTGAAATACTT+TGG 0.401377 5.1:-4238335 None:intergenic
TGCTGCGACGGCACGGGGCG+TGG 0.405775 5.1:+4238943 MS.gene015551:CDS
CTTAATGTGGGTGGAGCTGC+TGG 0.418056 5.1:+4239037 MS.gene015551:CDS
TACGAGTGCTGCGACGGCAC+GGG 0.438079 5.1:+4238937 MS.gene015551:CDS
GACGGAGAATGAGGTTGAAC+CGG 0.444512 5.1:+4239159 MS.gene015551:CDS
ACATGAGGTGCCTCAACCTC+TGG 0.453623 5.1:-4239094 None:intergenic
CGGATGATCAAGAGCGTCGT+TGG 0.460641 5.1:+4239311 MS.gene015551:CDS
ATGTGAGACGACGAGTTTGA+TGG 0.466931 5.1:+4239069 MS.gene015551:CDS
GCCATAGCTGTTCCTGCTGC+CGG 0.467534 5.1:-4238602 None:intergenic
TTGGTTTCATGGAATGAAGA+TGG 0.472004 5.1:+4238263 MS.gene015551:CDS
TGTTCATCACCAGAAGTTGC+TGG 0.476217 5.1:-4238689 None:intergenic
GCACCATTGTTCACCGCAAT+CGG 0.477786 5.1:-4238734 None:intergenic
GATTCACCTGTTTGCTCCAC+CGG 0.494684 5.1:-4238155 None:intergenic
ACATTACCGGTGGAGCAAAC+AGG 0.498008 5.1:+4238149 MS.gene015551:CDS
TGAACCGGAGAGAGAGGAAC+GGG 0.498202 5.1:+4239174 MS.gene015551:CDS
GCTGGAGACACCATTCTAAC+CGG 0.500615 5.1:-4238671 None:intergenic
GTTGGAAATTGACGAAATAG+TGG 0.503816 5.1:+4239329 MS.gene015551:CDS
GTCGAATTCATCTCCGATTG+CGG 0.505685 5.1:+4238721 MS.gene015551:CDS
ATTGAAACCCCAAACAGCTT+AGG 0.506033 5.1:-4239118 None:intergenic
CAATTGGGCTTAAACGATGT+AGG 0.509913 5.1:+4239137 MS.gene015551:CDS
TTAGCAAATTCCCACCGGTC+AGG 0.510367 5.1:-4238518 None:intergenic
TCATTCTCTTCAACTAACTC+CGG 0.512986 5.1:-4238791 None:intergenic
TTCGGAAAGTTGTACCTGAC+CGG 0.514506 5.1:+4238504 MS.gene015551:CDS
CTACGAGTGCTGCGACGGCA+CGG 0.515613 5.1:+4238936 MS.gene015551:CDS
ATCTTCTACGAGTGCTGCGA+CGG 0.517274 5.1:+4238931 MS.gene015551:CDS
TGTTCCCGTTCCTCTCTCTC+CGG 0.518493 5.1:-4239178 None:intergenic
TATGGCGGCACCGGTTAGAA+TGG 0.532149 5.1:+4238661 MS.gene015551:CDS
TCATGTTCCTAAGCTGTTTG+GGG 0.536796 5.1:+4239111 MS.gene015551:CDS
AACAGTAGCTATGGCGGCAC+CGG 0.542259 5.1:+4238652 MS.gene015551:CDS
TGAGGTTGAACCGGAGAGAG+AGG 0.546548 5.1:+4239168 MS.gene015551:CDS
CATGAGTTGCACCACTGCGC+CGG 0.546633 5.1:+4238772 MS.gene015551:CDS
CGGTGGGAATTTGCTAATGA+CGG 0.547176 5.1:+4238524 MS.gene015551:CDS
GGTGGAGCAAACAGGTGAAT+CGG 0.547365 5.1:+4238157 MS.gene015551:CDS
GCCGGCAGCAGGAACAGCTA+TGG 0.547975 5.1:+4238601 MS.gene015551:CDS
TAATACTGTAACAGTAGCTA+TGG 0.548334 5.1:+4238643 MS.gene015551:CDS
ACGATGTAGGACGGAGAATG+AGG 0.556638 5.1:+4239150 MS.gene015551:CDS
ACGAGTGCTGCGACGGCACG+GGG 0.561173 5.1:+4238938 MS.gene015551:CDS
TTTGATGGAACCAGAGGTTG+AGG 0.561367 5.1:+4239084 MS.gene015551:CDS
AAATCTCTAGCAAATTCAGC+AGG 0.569125 5.1:-4238308 None:intergenic
TGGTGATGGTGATGGTGACT+CGG 0.574712 5.1:+4239291 MS.gene015551:CDS
TCTCCGATTGCGGTGAACAA+TGG 0.579507 5.1:+4238731 MS.gene015551:CDS
CGGGGCGTGGTTGTAACAGA+AGG 0.579523 5.1:+4238956 MS.gene015551:CDS
AACAGGTGAATCGGCGACGG+CGG 0.583900 5.1:+4238166 MS.gene015551:CDS
AATGAGCTAAGTCAATTGAA+AGG 0.584859 5.1:+4238845 MS.gene015551:CDS
AAGGAATGTTTCATTAGCTG+AGG 0.585509 5.1:+4239003 MS.gene015551:CDS
CCTCGTGATGGTGATGGTGA+TGG 0.588325 5.1:+4239283 MS.gene015551:CDS
ATCAAACTCGTCGTCTCACA+TGG 0.592517 5.1:-4239067 None:intergenic
GCAAACAGGTGAATCGGCGA+CGG 0.608757 5.1:+4238163 MS.gene015551:CDS
AACTTCTGGTGATGAACAGG+TGG 0.612326 5.1:+4238694 MS.gene015551:CDS
AGTTAGTTGAAGAGAATGAA+AGG 0.612844 5.1:+4238795 MS.gene015551:CDS
CCATGAAACCAAATCATCAA+CGG 0.613347 5.1:-4238252 None:intergenic
GGAAAGTTGTACCTGACCGG+TGG 0.614886 5.1:+4238507 MS.gene015551:CDS
TCTGAACCTCGTGATGGTGA+TGG 0.617342 5.1:+4239277 MS.gene015551:CDS
ATTTGCTTCGAGATATTCAG+CGG 0.621869 5.1:+4238567 MS.gene015551:CDS
TTCAACTAACTCCGGCGCAG+TGG 0.622278 5.1:-4238783 None:intergenic
GATGCAAACACAATCCTCGC+AGG 0.623759 5.1:+4239228 MS.gene015551:CDS
GCAGGAGACTGATCGAGGAT+CGG 0.626303 5.1:+4239246 MS.gene015551:CDS
TCCTCGCAGGAGACTGATCG+AGG 0.628520 5.1:+4239241 MS.gene015551:CDS
GAAAGTTGTACCTGACCGGT+GGG 0.631205 5.1:+4238508 MS.gene015551:CDS
TACTGTAACAGTAGCTATGG+CGG 0.634074 5.1:+4238646 MS.gene015551:CDS
AATGTGGGTGGAGCTGCTGG+CGG 0.634893 5.1:+4239040 MS.gene015551:CDS
GGAAAATGTAGTGCTTAATG+TGG 0.635559 5.1:+4239024 MS.gene015551:CDS
TTGAACCGGAGAGAGAGGAA+CGG 0.637385 5.1:+4239173 MS.gene015551:CDS
AATGTAGTGCTTAATGTGGG+TGG 0.639772 5.1:+4239028 MS.gene015551:CDS
GAAAATGTAGTGCTTAATGT+GGG 0.644997 5.1:+4239025 MS.gene015551:CDS
CGTCATTAGCAAATTCCCAC+CGG 0.646656 5.1:-4238523 None:intergenic
GACGAGTTTGATGGAACCAG+AGG 0.648812 5.1:+4239078 MS.gene015551:CDS
CCAAACAGCTTAGGAACATG+AGG 0.651312 5.1:-4239109 None:intergenic
TGGGCTTAAACGATGTAGGA+CGG 0.657843 5.1:+4239141 MS.gene015551:CDS
TCCTCGATCAGTCTCCTGCG+AGG 0.667916 5.1:-4239242 None:intergenic
AGGAACAGCTATGGCGACAG+CGG 0.668564 5.1:+4238610 MS.gene015551:CDS
GGGGCGTGGTTGTAACAGAA+GGG 0.668865 5.1:+4238957 MS.gene015551:CDS
GTTGATGGCGACATTACCGG+TGG 0.679162 5.1:+4238139 None:intergenic
GCTAATGACGGATTTCGACG+AGG 0.685443 5.1:+4238536 MS.gene015551:CDS
GTGAAATCTGAACCTCGTGA+TGG 0.700758 5.1:+4239271 MS.gene015551:CDS
CCATCACCATCACCATCACG+AGG 0.701913 5.1:-4239283 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGAAAGTAAAACAAA+AGG - chr5.1:4238440-4238459 None:intergenic 15.0%
!!! AAATTTTGTGTTTATTTCTA+GGG + chr5.1:4238479-4238498 MS.gene015551:intron 15.0%
!!! TAAATTTTGTGTTTATTTCT+AGG + chr5.1:4238478-4238497 MS.gene015551:intron 15.0%
!!! TTTGTTTTACTTTCTTTTTT+AGG + chr5.1:4238440-4238459 MS.gene015551:intron 15.0%
!!! TTATTGTGTTTGAAATACTT+TGG - chr5.1:4238338-4238357 None:intergenic 20.0%
AATGAGCTAAGTCAATTGAA+AGG + chr5.1:4238845-4238864 MS.gene015551:CDS 30.0%
AGTTAGTTGAAGAGAATGAA+AGG + chr5.1:4238795-4238814 MS.gene015551:CDS 30.0%
ATGATGAGTAATTATGCTTC+TGG + chr5.1:4238890-4238909 MS.gene015551:CDS 30.0%
GAAAATGTAGTGCTTAATGT+GGG + chr5.1:4239025-4239044 MS.gene015551:CDS 30.0%
GCTAATGAAACATTCCTTAT+AGG - chr5.1:4239001-4239020 None:intergenic 30.0%
TAATACTGTAACAGTAGCTA+TGG + chr5.1:4238643-4238662 MS.gene015551:CDS 30.0%
! TGTAACAGAAGGGAAAATTT+TGG + chr5.1:4238967-4238986 MS.gene015551:CDS 30.0%
! TTTTGGATCTTTTGCCTATA+AGG + chr5.1:4238984-4239003 MS.gene015551:CDS 30.0%
!! GTGTTTATTTCTAGGGATTT+CGG + chr5.1:4238486-4238505 MS.gene015551:intron 30.0%
AAATCTCTAGCAAATTCAGC+AGG - chr5.1:4238311-4238330 None:intergenic 35.0%
AAGGAATGTTTCATTAGCTG+AGG + chr5.1:4239003-4239022 MS.gene015551:CDS 35.0%
ATGGAACAAGCTTCATAGTT+TGG + chr5.1:4238282-4238301 MS.gene015551:CDS 35.0%
ATTTGCTTCGAGATATTCAG+CGG + chr5.1:4238567-4238586 MS.gene015551:CDS 35.0%
CCATGAAACCAAATCATCAA+CGG - chr5.1:4238255-4238274 None:intergenic 35.0%
GGAAAATGTAGTGCTTAATG+TGG + chr5.1:4239024-4239043 MS.gene015551:CDS 35.0%
TCATTCTCTTCAACTAACTC+CGG - chr5.1:4238794-4238813 None:intergenic 35.0%
TTGGTTTCATGGAATGAAGA+TGG + chr5.1:4238263-4238282 MS.gene015551:CDS 35.0%
! TGATACGTTTTCGTCAGAAA+CGG - chr5.1:4238215-4238234 None:intergenic 35.0%
!! TGATTCTTCCGTTGATGATT+TGG + chr5.1:4238244-4238263 MS.gene015551:CDS 35.0%
AATGTAGTGCTTAATGTGGG+TGG + chr5.1:4239028-4239047 MS.gene015551:CDS 40.0%
ATTGAAACCCCAAACAGCTT+AGG - chr5.1:4239121-4239140 None:intergenic 40.0%
CAATTGGGCTTAAACGATGT+AGG + chr5.1:4239137-4239156 MS.gene015551:CDS 40.0%
CTCATGTTCCTAAGCTGTTT+GGG + chr5.1:4239110-4239129 MS.gene015551:CDS 40.0%
TACTGTAACAGTAGCTATGG+CGG + chr5.1:4238646-4238665 MS.gene015551:CDS 40.0%
TCAGCGGAGAAAAATATTGC+CGG + chr5.1:4238583-4238602 MS.gene015551:CDS 40.0%
TCATGTTCCTAAGCTGTTTG+GGG + chr5.1:4239111-4239130 MS.gene015551:CDS 40.0%
! AAGCTGTTTGGGGTTTCAAT+TGG + chr5.1:4239121-4239140 MS.gene015551:CDS 40.0%
! AGCTGTTTGGGGTTTCAATT+GGG + chr5.1:4239122-4239141 MS.gene015551:CDS 40.0%
!! ATTGAGTTGACGAACGAAAC+TGG - chr5.1:4238366-4238385 None:intergenic 40.0%
!! CCGTTGATGATTTGGTTTCA+TGG + chr5.1:4238252-4238271 MS.gene015551:CDS 40.0%
AGAAAAATATTGCCGGCAGC+AGG + chr5.1:4238590-4238609 MS.gene015551:CDS 45.0%
ATCAAACTCGTCGTCTCACA+TGG - chr5.1:4239070-4239089 None:intergenic 45.0%
ATGTGAGACGACGAGTTTGA+TGG + chr5.1:4239069-4239088 MS.gene015551:CDS 45.0%
CCAAACAGCTTAGGAACATG+AGG - chr5.1:4239112-4239131 None:intergenic 45.0%
CCTCATGTTCCTAAGCTGTT+TGG + chr5.1:4239109-4239128 MS.gene015551:CDS 45.0%
CGTCATTAGCAAATTCCCAC+CGG - chr5.1:4238526-4238545 None:intergenic 45.0%
GTCGAATTCATCTCCGATTG+CGG + chr5.1:4238721-4238740 MS.gene015551:CDS 45.0%
GTGAAATCTGAACCTCGTGA+TGG + chr5.1:4239271-4239290 MS.gene015551:CDS 45.0%
TGGGCTTAAACGATGTAGGA+CGG + chr5.1:4239141-4239160 MS.gene015551:CDS 45.0%
TGTTCATCACCAGAAGTTGC+TGG - chr5.1:4238692-4238711 None:intergenic 45.0%
TTCGGAAAGTTGTACCTGAC+CGG + chr5.1:4238504-4238523 MS.gene015551:CDS 45.0%
TTTGATGGAACCAGAGGTTG+AGG + chr5.1:4239084-4239103 MS.gene015551:CDS 45.0%
! AACTTCTGGTGATGAACAGG+TGG + chr5.1:4238694-4238713 MS.gene015551:CDS 45.0%
! AGCAACTTCTGGTGATGAAC+AGG + chr5.1:4238691-4238710 MS.gene015551:CDS 45.0%
!! CGGTGGGAATTTGCTAATGA+CGG + chr5.1:4238524-4238543 MS.gene015551:CDS 45.0%
ACATTACCGGTGGAGCAAAC+AGG + chr5.1:4238149-4238168 MS.gene015551:CDS 50.0%
ACGATGTAGGACGGAGAATG+AGG + chr5.1:4239150-4239169 MS.gene015551:CDS 50.0%
ATGGTGTCTCCAGCAACTTC+TGG + chr5.1:4238680-4238699 MS.gene015551:CDS 50.0%
GAAAGTTGTACCTGACCGGT+GGG + chr5.1:4238508-4238527 MS.gene015551:CDS 50.0%
GACGAGTTTGATGGAACCAG+AGG + chr5.1:4239078-4239097 MS.gene015551:CDS 50.0%
GACGGAGAATGAGGTTGAAC+CGG + chr5.1:4239159-4239178 MS.gene015551:CDS 50.0%
GATGCAAACACAATCCTCGC+AGG + chr5.1:4239228-4239247 MS.gene015551:CDS 50.0%
GATTCACCTGTTTGCTCCAC+CGG - chr5.1:4238158-4238177 None:intergenic 50.0%
GCACCATTGTTCACCGCAAT+CGG - chr5.1:4238737-4238756 None:intergenic 50.0%
GCTGGAGACACCATTCTAAC+CGG - chr5.1:4238674-4238693 None:intergenic 50.0%
GGTGGAGCAAACAGGTGAAT+CGG + chr5.1:4238157-4238176 MS.gene015551:CDS 50.0%
TCTCCGATTGCGGTGAACAA+TGG + chr5.1:4238731-4238750 MS.gene015551:CDS 50.0%
TTAGCAAATTCCCACCGGTC+AGG - chr5.1:4238521-4238540 None:intergenic 50.0%
TTGAACCGGAGAGAGAGGAA+CGG + chr5.1:4239173-4239192 MS.gene015551:CDS 50.0%
! ATCTTCTACGAGTGCTGCGA+CGG + chr5.1:4238931-4238950 MS.gene015551:CDS 50.0%
! GTTTTCGTCAGAAACGGCGT+CGG - chr5.1:4238209-4238228 None:intergenic 50.0%
! TCTGAACCTCGTGATGGTGA+TGG + chr5.1:4239277-4239296 MS.gene015551:CDS 50.0%
!! GCTAATGACGGATTTCGACG+AGG + chr5.1:4238536-4238555 MS.gene015551:CDS 50.0%
!! TGGTGATGGTGATGGTGACT+CGG + chr5.1:4239291-4239310 MS.gene015551:CDS 50.0%
AACAGTAGCTATGGCGGCAC+CGG + chr5.1:4238652-4238671 MS.gene015551:CDS 55.0%
AGGAACAGCTATGGCGACAG+CGG + chr5.1:4238610-4238629 MS.gene015551:CDS 55.0%
CCATCACCATCACCATCACG+AGG - chr5.1:4239286-4239305 None:intergenic 55.0%
CTTAATGTGGGTGGAGCTGC+TGG + chr5.1:4239037-4239056 MS.gene015551:CDS 55.0%
GCAAACAGGTGAATCGGCGA+CGG + chr5.1:4238163-4238182 MS.gene015551:CDS 55.0%
GCAGGAGACTGATCGAGGAT+CGG + chr5.1:4239246-4239265 MS.gene015551:CDS 55.0%
GGAAAGTTGTACCTGACCGG+TGG + chr5.1:4238507-4238526 MS.gene015551:CDS 55.0%
GGGGCGTGGTTGTAACAGAA+GGG + chr5.1:4238957-4238976 MS.gene015551:CDS 55.0%
TGAACCGGAGAGAGAGGAAC+GGG + chr5.1:4239174-4239193 MS.gene015551:CDS 55.0%
TGAGGTTGAACCGGAGAGAG+AGG + chr5.1:4239168-4239187 MS.gene015551:CDS 55.0%
TGTTCCCGTTCCTCTCTCTC+CGG - chr5.1:4239181-4239200 None:intergenic 55.0%
TTCAACTAACTCCGGCGCAG+TGG - chr5.1:4238786-4238805 None:intergenic 55.0%
! ACATGAGGTGCCTCAACCTC+TGG - chr5.1:4239097-4239116 None:intergenic 55.0%
!! CCTCGTGATGGTGATGGTGA+TGG + chr5.1:4239283-4239302 MS.gene015551:CDS 55.0%
!! CGGATGATCAAGAGCGTCGT+TGG + chr5.1:4239311-4239330 MS.gene015551:CDS 55.0%
!! TATGGCGGCACCGGTTAGAA+TGG + chr5.1:4238661-4238680 MS.gene015551:CDS 55.0%
AACAGGTGAATCGGCGACGG+CGG + chr5.1:4238166-4238185 MS.gene015551:CDS 60.0%
AATGTGGGTGGAGCTGCTGG+CGG + chr5.1:4239040-4239059 MS.gene015551:CDS 60.0%
CATGAGTTGCACCACTGCGC+CGG + chr5.1:4238772-4238791 MS.gene015551:CDS 60.0%
CGGGGCGTGGTTGTAACAGA+AGG + chr5.1:4238956-4238975 MS.gene015551:CDS 60.0%
GCCATAGCTGTTCCTGCTGC+CGG - chr5.1:4238605-4238624 None:intergenic 60.0%
TCCTCGATCAGTCTCCTGCG+AGG - chr5.1:4239245-4239264 None:intergenic 60.0%
TCCTCGCAGGAGACTGATCG+AGG + chr5.1:4239241-4239260 MS.gene015551:CDS 60.0%
GCCGGCAGCAGGAACAGCTA+TGG + chr5.1:4238601-4238620 MS.gene015551:CDS 65.0%
! CTACGAGTGCTGCGACGGCA+CGG + chr5.1:4238936-4238955 MS.gene015551:CDS 65.0%
! TACGAGTGCTGCGACGGCAC+GGG + chr5.1:4238937-4238956 MS.gene015551:CDS 65.0%
! ACGAGTGCTGCGACGGCACG+GGG + chr5.1:4238938-4238957 MS.gene015551:CDS 70.0%
! TGCTGCGACGGCACGGGGCG+TGG + chr5.1:4238943-4238962 MS.gene015551:CDS 80.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 4238143 4239348 4238143 ID=MS.gene015551
chr5.1 mRNA 4238143 4239348 4238143 ID=MS.gene015551.t1;Parent=MS.gene015551
chr5.1 exon 4238143 4238391 4238143 ID=MS.gene015551.t1.exon1;Parent=MS.gene015551.t1
chr5.1 CDS 4238143 4238391 4238143 ID=cds.MS.gene015551.t1;Parent=MS.gene015551.t1
chr5.1 exon 4238500 4239348 4238500 ID=MS.gene015551.t1.exon2;Parent=MS.gene015551.t1
chr5.1 CDS 4238500 4239348 4238500 ID=cds.MS.gene015551.t1;Parent=MS.gene015551.t1
Gene Sequence

>MS.gene015551

ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCGGCGACGGCGGAGTCGCAGAGATCGATTCCGACGCCGTTTCTGACGAAAACGTATCAACTTGTTGATGATTCTTCCGTTGATGATTTGGTTTCATGGAATGAAGATGGAACAAGCTTCATAGTTTGGAAGCCTGCTGAATTTGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGTTTCGTTCGTCAACTCAATACTTATGTAACTAACTAAATCTCTTTAATCTTAATCTTATCGTATTCTATTCCTTTTGTTTTACTTTCTTTTTTAGGATTTTTTTTTCTCTCTAAATTTTGTGTTTATTTCTAGGGATTTCGGAAAGTTGTACCTGACCGGTGGGAATTTGCTAATGACGGATTTCGACGAGGCGAGAAAAATTTGCTTCGAGATATTCAGCGGAGAAAAATATTGCCGGCAGCAGGAACAGCTATGGCGACAGCGGTAGCTGCAGCTAATACTGTAACAGTAGCTATGGCGGCACCGGTTAGAATGGTGTCTCCAGCAACTTCTGGTGATGAACAGGTGGTTTCGTCGAATTCATCTCCGATTGCGGTGAACAATGGTGCTACAGTGCAGCGTAGCATGAGTTGCACCACTGCGCCGGAGTTAGTTGAAGAGAATGAAAGGCTTAAGAAAGAGAATATGCAATTGAGTAATGAGCTAAGTCAATTGAAAGGTCTTTGTAATAATATACTTGCTATGATGAGTAATTATGCTTCTGGTTTTAGTAGACAGTTAGAATCTTCTACGAGTGCTGCGACGGCACGGGGCGTGGTTGTAACAGAAGGGAAAATTTTGGATCTTTTGCCTATAAGGAATGTTTCATTAGCTGAGGAAAATGTAGTGCTTAATGTGGGTGGAGCTGCTGGCGGTGTGCCATGTGAGACGACGAGTTTGATGGAACCAGAGGTTGAGGCACCTCATGTTCCTAAGCTGTTTGGGGTTTCAATTGGGCTTAAACGATGTAGGACGGAGAATGAGGTTGAACCGGAGAGAGAGGAACGGGAACAGCATCAACAAATTCGAATGCAAGTGCAGATGCAAACACAATCCTCGCAGGAGACTGATCGAGGATCGGATGTGAAATCTGAACCTCGTGATGGTGATGGTGATGGTGACTCGGATGATCAAGAGCGTCGTTGGAAATTGACGAAATAG
Protein sequence

>MS.gene015551.t1

MATLPVEQTGESATAESQRSIPTPFLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKILPAAGTAMATAVAAANTVTVAMAAPVRMVSPATSGDEQVVSSNSSPIAVNNGATVQRSMSCTTAPELVEENERLKKENMQLSNELSQLKGLCNNILAMMSNYASGFSRQLESSTSAATARGVVVTEGKILDLLPIRNVSLAEENVVLNVGGAAGGVPCETTSLMEPEVEAPHVPKLFGVSIGLKRCRTENEVEPEREEREQHQQIRMQVQMQTQSSQETDRGSDVKSEPRDGDGDGDSDDQERRWKLTK