Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01559.t1 | XP_013462554.1 | 94.4 | 161 | 8 | 1 | 1 | 160 | 1 | 161 | 2.70E-81 | 311.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01559.t1 | P68350 | 61.4 | 114 | 24 | 1 | 8 | 101 | 4 | 117 | 3.1e-33 | 142.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01559.t1 | A0A072V3I5 | 94.4 | 161 | 8 | 1 | 1 | 160 | 1 | 161 | 2.0e-81 | 311.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene01559.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01559.t1 | MTR_2g016030 | 88.820 | 161 | 17 | 1 | 1 | 160 | 1 | 161 | 3.81e-103 | 292 |
MS.gene01559.t1 | MTR_6g012450 | 69.136 | 81 | 24 | 1 | 19 | 99 | 110 | 189 | 2.85e-36 | 130 |
MS.gene01559.t1 | MTR_4g082060 | 64.948 | 97 | 29 | 3 | 33 | 127 | 110 | 203 | 3.29e-35 | 127 |
MS.gene01559.t1 | MTR_8g044220 | 62.791 | 86 | 31 | 1 | 25 | 109 | 96 | 181 | 4.41e-35 | 127 |
MS.gene01559.t1 | MTR_7g010950 | 69.737 | 76 | 22 | 1 | 24 | 99 | 114 | 188 | 1.22e-34 | 126 |
MS.gene01559.t1 | MTR_7g086780 | 69.863 | 73 | 21 | 1 | 28 | 99 | 80 | 152 | 1.80e-32 | 119 |
MS.gene01559.t1 | MTR_5g041380 | 56.989 | 93 | 38 | 1 | 18 | 108 | 97 | 189 | 9.34e-32 | 117 |
MS.gene01559.t1 | MTR_6g027460 | 70.423 | 71 | 20 | 1 | 30 | 99 | 79 | 149 | 4.95e-31 | 115 |
MS.gene01559.t1 | MTR_6g027450 | 69.014 | 71 | 21 | 1 | 30 | 99 | 72 | 142 | 1.50e-30 | 112 |
MS.gene01559.t1 | MTR_3g435480 | 62.667 | 75 | 27 | 1 | 25 | 99 | 116 | 189 | 3.32e-30 | 114 |
MS.gene01559.t1 | MTR_5g041530 | 69.014 | 71 | 19 | 1 | 32 | 99 | 123 | 193 | 4.19e-30 | 112 |
MS.gene01559.t1 | MTR_5g041400 | 61.039 | 77 | 30 | 0 | 32 | 108 | 105 | 181 | 1.13e-29 | 111 |
MS.gene01559.t1 | MTR_5g041420 | 55.422 | 83 | 32 | 1 | 17 | 99 | 114 | 191 | 1.21e-29 | 110 |
MS.gene01559.t1 | MTR_2g096740 | 57.895 | 76 | 32 | 0 | 24 | 99 | 40 | 115 | 2.37e-28 | 106 |
MS.gene01559.t1 | MTR_2g096740 | 57.895 | 76 | 32 | 0 | 24 | 99 | 55 | 130 | 2.69e-28 | 106 |
MS.gene01559.t1 | MTR_4g022370 | 71.930 | 57 | 16 | 0 | 43 | 99 | 79 | 135 | 4.79e-26 | 101 |
MS.gene01559.t1 | MTR_8g015840 | 57.746 | 71 | 24 | 1 | 34 | 98 | 2 | 72 | 1.19e-25 | 97.8 |
MS.gene01559.t1 | MTR_8g068210 | 45.545 | 101 | 52 | 2 | 28 | 127 | 13 | 111 | 1.50e-25 | 99.8 |
MS.gene01559.t1 | MTR_8g479350 | 47.000 | 100 | 42 | 2 | 48 | 138 | 70 | 167 | 1.78e-25 | 99.8 |
MS.gene01559.t1 | MTR_8g079060 | 69.231 | 52 | 16 | 0 | 46 | 97 | 29 | 80 | 9.85e-25 | 95.5 |
MS.gene01559.t1 | MTR_8g027295 | 54.878 | 82 | 33 | 2 | 36 | 113 | 12 | 93 | 1.00e-24 | 96.7 |
MS.gene01559.t1 | MTR_4g063780 | 72.727 | 55 | 15 | 0 | 43 | 97 | 72 | 126 | 1.23e-24 | 97.4 |
MS.gene01559.t1 | MTR_7g024670 | 78.000 | 50 | 11 | 0 | 48 | 97 | 79 | 128 | 1.53e-24 | 97.8 |
MS.gene01559.t1 | MTR_4g109980 | 69.811 | 53 | 16 | 0 | 44 | 96 | 38 | 90 | 1.99e-24 | 96.7 |
MS.gene01559.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 46 | 94 | 31 | 79 | 3.26e-24 | 93.6 |
MS.gene01559.t1 | MTR_7g059400 | 70.175 | 57 | 17 | 0 | 43 | 99 | 73 | 129 | 3.64e-24 | 96.3 |
MS.gene01559.t1 | MTR_2g093220 | 57.971 | 69 | 29 | 0 | 31 | 99 | 25 | 93 | 4.73e-24 | 95.1 |
MS.gene01559.t1 | MTR_3g091820 | 63.158 | 57 | 21 | 0 | 43 | 99 | 40 | 96 | 5.48e-24 | 95.1 |
MS.gene01559.t1 | MTR_4g088580 | 54.878 | 82 | 28 | 2 | 48 | 120 | 57 | 138 | 1.01e-23 | 95.5 |
MS.gene01559.t1 | MTR_5g031440 | 68.519 | 54 | 17 | 0 | 43 | 96 | 40 | 93 | 2.18e-23 | 94.0 |
MS.gene01559.t1 | MTR_1g077600 | 61.818 | 55 | 21 | 0 | 43 | 97 | 40 | 94 | 3.43e-23 | 92.4 |
MS.gene01559.t1 | MTR_1g077600 | 61.818 | 55 | 21 | 0 | 43 | 97 | 40 | 94 | 3.82e-23 | 92.8 |
MS.gene01559.t1 | MTR_4g089095 | 67.308 | 52 | 17 | 0 | 48 | 99 | 52 | 103 | 4.20e-23 | 92.8 |
MS.gene01559.t1 | MTR_4g089095 | 67.308 | 52 | 17 | 0 | 48 | 99 | 18 | 69 | 4.85e-23 | 92.0 |
MS.gene01559.t1 | MTR_2g014170 | 71.429 | 49 | 14 | 0 | 46 | 94 | 45 | 93 | 1.71e-22 | 91.3 |
MS.gene01559.t1 | MTR_4g461080 | 52.703 | 74 | 35 | 0 | 24 | 97 | 7 | 80 | 2.35e-22 | 90.5 |
MS.gene01559.t1 | MTR_2g013370 | 62.963 | 54 | 20 | 0 | 46 | 99 | 46 | 99 | 2.60e-22 | 90.1 |
MS.gene01559.t1 | MTR_1g056810 | 62.903 | 62 | 22 | 1 | 39 | 99 | 4 | 65 | 3.33e-22 | 90.1 |
MS.gene01559.t1 | MTR_3g090430 | 63.793 | 58 | 21 | 0 | 42 | 99 | 47 | 104 | 3.63e-22 | 90.9 |
MS.gene01559.t1 | MTR_2g014060 | 48.052 | 77 | 40 | 0 | 22 | 98 | 1 | 77 | 4.63e-22 | 90.5 |
MS.gene01559.t1 | MTR_3g077750 | 66.667 | 51 | 17 | 0 | 46 | 96 | 61 | 111 | 1.52e-21 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01559.t1 | AT1G29160 | 61.404 | 114 | 24 | 1 | 8 | 101 | 4 | 117 | 1.26e-45 | 147 |
MS.gene01559.t1 | AT2G34140 | 61.818 | 110 | 26 | 1 | 8 | 101 | 4 | 113 | 5.36e-44 | 143 |
MS.gene01559.t1 | AT3G47500 | 58.252 | 103 | 43 | 0 | 20 | 122 | 84 | 186 | 2.54e-35 | 127 |
MS.gene01559.t1 | AT5G62430 | 59.000 | 100 | 29 | 2 | 12 | 99 | 8 | 107 | 7.92e-35 | 123 |
MS.gene01559.t1 | AT5G39660 | 80.952 | 63 | 12 | 0 | 40 | 102 | 132 | 194 | 3.95e-34 | 124 |
MS.gene01559.t1 | AT5G39660 | 80.952 | 63 | 12 | 0 | 40 | 102 | 132 | 194 | 3.95e-34 | 124 |
MS.gene01559.t1 | AT5G39660 | 80.952 | 63 | 12 | 0 | 40 | 102 | 132 | 194 | 3.95e-34 | 124 |
MS.gene01559.t1 | AT1G26790 | 55.340 | 103 | 39 | 1 | 23 | 125 | 88 | 183 | 1.00e-33 | 122 |
MS.gene01559.t1 | AT1G69570 | 59.341 | 91 | 30 | 1 | 34 | 124 | 120 | 203 | 2.46e-32 | 119 |
MS.gene01559.t1 | AT2G28810 | 74.545 | 55 | 14 | 0 | 43 | 97 | 74 | 128 | 6.06e-26 | 100 |
MS.gene01559.t1 | AT5G60850 | 72.222 | 54 | 15 | 0 | 46 | 99 | 51 | 104 | 7.80e-26 | 100 |
MS.gene01559.t1 | AT2G28810 | 74.545 | 55 | 14 | 0 | 43 | 97 | 91 | 145 | 9.92e-26 | 100 |
MS.gene01559.t1 | AT1G51700 | 69.811 | 53 | 16 | 0 | 46 | 98 | 33 | 85 | 1.11e-25 | 97.4 |
MS.gene01559.t1 | AT3G21270 | 75.000 | 52 | 13 | 0 | 46 | 97 | 29 | 80 | 2.19e-25 | 96.7 |
MS.gene01559.t1 | AT2G37590 | 70.175 | 57 | 17 | 0 | 43 | 99 | 86 | 142 | 3.06e-25 | 99.0 |
MS.gene01559.t1 | AT3G55370 | 70.175 | 57 | 17 | 0 | 43 | 99 | 73 | 129 | 3.11e-25 | 99.0 |
MS.gene01559.t1 | AT3G55370 | 70.175 | 57 | 17 | 0 | 43 | 99 | 73 | 129 | 3.28e-25 | 99.4 |
MS.gene01559.t1 | AT3G55370 | 70.175 | 57 | 17 | 0 | 43 | 99 | 118 | 174 | 4.47e-25 | 99.0 |
MS.gene01559.t1 | AT3G50410 | 69.811 | 53 | 16 | 0 | 46 | 98 | 30 | 82 | 5.21e-25 | 97.1 |
MS.gene01559.t1 | AT4G38000 | 58.824 | 68 | 27 | 1 | 43 | 109 | 38 | 105 | 5.92e-25 | 96.7 |
MS.gene01559.t1 | AT1G07640 | 53.750 | 80 | 37 | 0 | 18 | 97 | 49 | 128 | 7.51e-25 | 97.8 |
MS.gene01559.t1 | AT1G07640 | 53.750 | 80 | 37 | 0 | 18 | 97 | 57 | 136 | 8.53e-25 | 97.8 |
MS.gene01559.t1 | AT1G07640 | 78.000 | 50 | 11 | 0 | 48 | 97 | 23 | 72 | 1.10e-24 | 96.7 |
MS.gene01559.t1 | AT5G65590 | 66.667 | 57 | 19 | 0 | 43 | 99 | 38 | 94 | 3.34e-24 | 95.9 |
MS.gene01559.t1 | AT5G02460 | 70.175 | 57 | 17 | 0 | 43 | 99 | 92 | 148 | 5.92e-24 | 96.3 |
MS.gene01559.t1 | AT5G66940 | 53.425 | 73 | 34 | 0 | 46 | 118 | 32 | 104 | 1.54e-23 | 92.4 |
MS.gene01559.t1 | AT3G45610 | 52.778 | 72 | 34 | 0 | 28 | 99 | 22 | 93 | 1.97e-23 | 92.8 |
MS.gene01559.t1 | AT5G60200 | 64.912 | 57 | 20 | 0 | 43 | 99 | 52 | 108 | 2.92e-23 | 92.4 |
MS.gene01559.t1 | AT1G47655 | 64.815 | 54 | 19 | 0 | 41 | 94 | 24 | 77 | 3.66e-23 | 91.3 |
MS.gene01559.t1 | AT2G28510 | 73.077 | 52 | 14 | 0 | 48 | 99 | 50 | 101 | 3.86e-23 | 92.8 |
MS.gene01559.t1 | AT4G24060 | 61.404 | 57 | 22 | 0 | 43 | 99 | 50 | 106 | 5.53e-23 | 93.2 |
MS.gene01559.t1 | AT1G21340 | 50.000 | 94 | 38 | 2 | 48 | 138 | 40 | 127 | 8.19e-23 | 91.3 |
MS.gene01559.t1 | AT1G28310 | 66.667 | 54 | 18 | 0 | 46 | 99 | 27 | 80 | 9.28e-23 | 92.0 |
MS.gene01559.t1 | AT3G52440 | 64.407 | 59 | 20 | 1 | 44 | 101 | 41 | 99 | 9.87e-23 | 91.3 |
MS.gene01559.t1 | AT3G52440 | 46.000 | 100 | 48 | 3 | 44 | 137 | 22 | 121 | 1.01e-22 | 90.9 |
MS.gene01559.t1 | AT3G61850 | 56.250 | 64 | 28 | 0 | 36 | 99 | 52 | 115 | 1.12e-22 | 91.3 |
MS.gene01559.t1 | AT3G61850 | 56.250 | 64 | 28 | 0 | 36 | 99 | 52 | 115 | 1.12e-22 | 91.3 |
MS.gene01559.t1 | AT1G64620 | 65.385 | 52 | 18 | 0 | 43 | 94 | 46 | 97 | 1.24e-22 | 92.4 |
MS.gene01559.t1 | AT3G61850 | 56.250 | 64 | 28 | 0 | 36 | 99 | 64 | 127 | 1.25e-22 | 91.7 |
MS.gene01559.t1 | AT1G28310 | 66.667 | 54 | 18 | 0 | 46 | 99 | 51 | 104 | 1.34e-22 | 92.0 |
MS.gene01559.t1 | AT3G61850 | 56.250 | 64 | 28 | 0 | 36 | 99 | 52 | 115 | 1.86e-22 | 91.3 |
MS.gene01559.t1 | AT3G61850 | 56.250 | 64 | 28 | 0 | 36 | 99 | 64 | 127 | 1.90e-22 | 91.3 |
MS.gene01559.t1 | AT4G00940 | 69.231 | 52 | 16 | 0 | 48 | 99 | 70 | 121 | 4.05e-22 | 90.1 |
MS.gene01559.t1 | AT4G00940 | 69.231 | 52 | 16 | 0 | 48 | 99 | 70 | 121 | 4.05e-22 | 90.1 |
MS.gene01559.t1 | AT4G00940 | 69.231 | 52 | 16 | 0 | 48 | 99 | 70 | 121 | 4.05e-22 | 90.1 |
MS.gene01559.t1 | AT5G62940 | 69.388 | 49 | 15 | 0 | 48 | 96 | 75 | 123 | 1.19e-21 | 89.7 |
MS.gene01559.t1 | AT4G21050 | 57.143 | 63 | 27 | 0 | 48 | 110 | 26 | 88 | 5.06e-21 | 85.5 |
MS.gene01559.t1 | AT2G46590 | 68.750 | 48 | 15 | 0 | 46 | 93 | 68 | 115 | 6.14e-21 | 87.8 |
MS.gene01559.t1 | AT2G46590 | 68.750 | 48 | 15 | 0 | 46 | 93 | 80 | 127 | 7.08e-21 | 87.8 |
MS.gene01559.t1 | AT4G21040 | 61.667 | 60 | 19 | 1 | 48 | 103 | 27 | 86 | 8.63e-20 | 82.8 |
MS.gene01559.t1 | AT4G21080 | 55.882 | 68 | 26 | 1 | 48 | 111 | 27 | 94 | 3.55e-19 | 81.6 |
MS.gene01559.t1 | AT4G21030 | 44.118 | 68 | 38 | 0 | 48 | 115 | 23 | 90 | 4.85e-14 | 67.0 |
Find 46 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATACAAGGGATTAAGCTATT+TGG | 0.296201 | 2.2:+67528044 | MS.gene01559:CDS |
GGTCTTCCTCCGCCGCTTGC+CGG | 0.325640 | 2.2:-67528444 | None:intergenic |
GCTTCATAGACACAACTTTC+CGG | 0.327262 | 2.2:-67528341 | None:intergenic |
GTTCTAACCCTAAGTAGTTC+TGG | 0.342013 | 2.2:-67528382 | None:intergenic |
GTAAGAGCTGTCAAAGATAC+TGG | 0.350596 | 2.2:+67528234 | MS.gene01559:CDS |
ATGTCCAAGATGCAAGAGTA+TGG | 0.357770 | 2.2:+67528157 | MS.gene01559:CDS |
GATGATGGCCAGAACTACTT+AGG | 0.413991 | 2.2:+67528374 | MS.gene01559:CDS |
GTTTCCATACTCTTGCATCT+TGG | 0.414049 | 2.2:-67528161 | None:intergenic |
CTCCGACGACCTGCTCCAAC+CGG | 0.429962 | 2.2:-67528284 | None:intergenic |
TGGGGCCCTCCGTAACGTTC+CGG | 0.432988 | 2.2:+67528265 | MS.gene01559:CDS |
ATCCTCAAGACTTGGCGGCT+TGG | 0.460966 | 2.2:-67528309 | None:intergenic |
CGTAACGTTCCGGTTGGAGC+AGG | 0.491556 | 2.2:+67528275 | MS.gene01559:CDS |
CAAAGATACTGGACGGCTGG+TGG | 0.496439 | 2.2:+67528245 | MS.gene01559:CDS |
AAAAGAAAGTGAAGATCAAA+CGG | 0.511866 | 2.2:+67528106 | MS.gene01559:CDS |
CTGCTCCAACCGGAACGTTA+CGG | 0.518351 | 2.2:-67528274 | None:intergenic |
GCCCTCCGTAACGTTCCGGT+TGG | 0.526190 | 2.2:+67528269 | MS.gene01559:CDS |
AAAGATACTGGACGGCTGGT+GGG | 0.536772 | 2.2:+67528246 | MS.gene01559:CDS |
TTGCATGAGGAATTAAAAGA+AGG | 0.537402 | 2.2:+67528080 | MS.gene01559:CDS |
TCTTGAGGATAGCGGTTCAC+CGG | 0.541063 | 2.2:+67528322 | MS.gene01559:CDS |
ATGATGGCCAGAACTACTTA+GGG | 0.541176 | 2.2:+67528375 | MS.gene01559:CDS |
TTCCGGTTGGAGCAGGTCGT+CGG | 0.541484 | 2.2:+67528282 | MS.gene01559:CDS |
TGTCAAAGATACTGGACGGC+TGG | 0.542444 | 2.2:+67528242 | MS.gene01559:CDS |
CGGTTGGAGCAGGTCGTCGG+AGG | 0.543759 | 2.2:+67528285 | MS.gene01559:CDS |
AGAAAAGGTGAAGAGATACA+AGG | 0.544735 | 2.2:+67528029 | MS.gene01559:CDS |
ATACTCTTGCATCTTGGACA+TGG | 0.546078 | 2.2:-67528155 | None:intergenic |
GGCCAAGCCGCCAAGTCTTG+AGG | 0.555303 | 2.2:+67528307 | MS.gene01559:CDS |
AAGCGGCGGAGGAAGACCTC+AGG | 0.572311 | 2.2:+67528449 | MS.gene01559:CDS |
GAAGCTGCTAATTCTGATGA+TGG | 0.575725 | 2.2:+67528359 | MS.gene01559:CDS |
AAAATGGCTGAAGTGAGAAA+AGG | 0.579551 | 2.2:+67528014 | None:intergenic |
AAGATACTGGACGGCTGGTG+GGG | 0.581078 | 2.2:+67528247 | MS.gene01559:CDS |
CCGCTATCCTCAAGACTTGG+CGG | 0.597183 | 2.2:-67528314 | None:intergenic |
GAACCGCTATCCTCAAGACT+TGG | 0.599554 | 2.2:-67528317 | None:intergenic |
GAAAAGGTGAAGAGATACAA+GGG | 0.603099 | 2.2:+67528030 | MS.gene01559:CDS |
GGTTGGAGCAGGTCGTCGGA+GGG | 0.610139 | 2.2:+67528286 | MS.gene01559:CDS |
CACAACAATAAAATTGCATG+AGG | 0.620119 | 2.2:+67528067 | MS.gene01559:CDS |
CGGCGGAGGAAGACCTCAGG+TGG | 0.630380 | 2.2:+67528452 | MS.gene01559:CDS |
TGCTAATGAATAACCACCTG+AGG | 0.631649 | 2.2:-67528465 | None:intergenic |
GAGCTGTCAAAGATACTGGA+CGG | 0.644495 | 2.2:+67528238 | MS.gene01559:CDS |
TCCAACCGGAACGTTACGGA+GGG | 0.647718 | 2.2:-67528270 | None:intergenic |
TCCCGAAAATCACTCTGAGG+AGG | 0.648141 | 2.2:-67528413 | None:intergenic |
CTCCAACCGGAACGTTACGG+AGG | 0.649811 | 2.2:-67528271 | None:intergenic |
ACTTCCCGAAAATCACTCTG+AGG | 0.686816 | 2.2:-67528416 | None:intergenic |
GTAAAGAACAAGAAATCACA+AGG | 0.691544 | 2.2:-67528492 | None:intergenic |
AGAAAGTGAAGATCAAACGG+TGG | 0.696077 | 2.2:+67528109 | MS.gene01559:CDS |
CCGCCAAGTCTTGAGGATAG+CGG | 0.704408 | 2.2:+67528314 | MS.gene01559:CDS |
AAGAACAAGAAATCACAAGG+AGG | 0.761754 | 2.2:-67528489 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAAGAAAGTGAAGATCAAA+CGG | + | chr2.2:67528106-67528125 | MS.gene01559:CDS | 25.0% |
ATACAAGGGATTAAGCTATT+TGG | + | chr2.2:67528044-67528063 | MS.gene01559:CDS | 30.0% | |
CACAACAATAAAATTGCATG+AGG | + | chr2.2:67528067-67528086 | MS.gene01559:CDS | 30.0% | |
TTGCATGAGGAATTAAAAGA+AGG | + | chr2.2:67528080-67528099 | MS.gene01559:CDS | 30.0% | |
AGAAAAGGTGAAGAGATACA+AGG | + | chr2.2:67528029-67528048 | MS.gene01559:CDS | 35.0% | |
CAGCTCTTACAAAAATGTCT+TGG | - | chr2.2:67528224-67528243 | None:intergenic | 35.0% | |
GAAAAGGTGAAGAGATACAA+GGG | + | chr2.2:67528030-67528049 | MS.gene01559:CDS | 35.0% | |
!!! | GATTTTCGGGAAGTATTTTC+CGG | + | chr2.2:67528425-67528444 | MS.gene01559:CDS | 35.0% |
AGAAAGTGAAGATCAAACGG+TGG | + | chr2.2:67528109-67528128 | MS.gene01559:CDS | 40.0% | |
ATACTCTTGCATCTTGGACA+TGG | - | chr2.2:67528158-67528177 | None:intergenic | 40.0% | |
ATGATGGCCAGAACTACTTA+GGG | + | chr2.2:67528375-67528394 | MS.gene01559:CDS | 40.0% | |
ATGTCCAAGATGCAAGAGTA+TGG | + | chr2.2:67528157-67528176 | MS.gene01559:CDS | 40.0% | |
GAAGCTGCTAATTCTGATGA+TGG | + | chr2.2:67528359-67528378 | MS.gene01559:CDS | 40.0% | |
GCTTCATAGACACAACTTTC+CGG | - | chr2.2:67528344-67528363 | None:intergenic | 40.0% | |
GTAAGAGCTGTCAAAGATAC+TGG | + | chr2.2:67528234-67528253 | MS.gene01559:CDS | 40.0% | |
GTTCTAACCCTAAGTAGTTC+TGG | - | chr2.2:67528385-67528404 | None:intergenic | 40.0% | |
GTTTCCATACTCTTGCATCT+TGG | - | chr2.2:67528164-67528183 | None:intergenic | 40.0% | |
TGCTAATGAATAACCACCTG+AGG | - | chr2.2:67528468-67528487 | None:intergenic | 40.0% | |
ACTTCCCGAAAATCACTCTG+AGG | - | chr2.2:67528419-67528438 | None:intergenic | 45.0% | |
GAGCTGTCAAAGATACTGGA+CGG | + | chr2.2:67528238-67528257 | MS.gene01559:CDS | 45.0% | |
! | GATGATGGCCAGAACTACTT+AGG | + | chr2.2:67528374-67528393 | MS.gene01559:CDS | 45.0% |
! | TGCCTCCTCAGAGTGATTTT+CGG | + | chr2.2:67528411-67528430 | MS.gene01559:CDS | 45.0% |
AAAGATACTGGACGGCTGGT+GGG | + | chr2.2:67528246-67528265 | MS.gene01559:CDS | 50.0% | |
GAACCGCTATCCTCAAGACT+TGG | - | chr2.2:67528320-67528339 | None:intergenic | 50.0% | |
TGTCAAAGATACTGGACGGC+TGG | + | chr2.2:67528242-67528261 | MS.gene01559:CDS | 50.0% | |
! | AAGTATTTTCCGGCAAGCGG+CGG | + | chr2.2:67528435-67528454 | MS.gene01559:CDS | 50.0% |
! | GCCTCCTCAGAGTGATTTTC+GGG | + | chr2.2:67528412-67528431 | MS.gene01559:CDS | 50.0% |
! | TCCCGAAAATCACTCTGAGG+AGG | - | chr2.2:67528416-67528435 | None:intergenic | 50.0% |
! | TCTTGAGGATAGCGGTTCAC+CGG | + | chr2.2:67528322-67528341 | MS.gene01559:CDS | 50.0% |
!!! | GGGAAGTATTTTCCGGCAAG+CGG | + | chr2.2:67528432-67528451 | MS.gene01559:CDS | 50.0% |
AAGATACTGGACGGCTGGTG+GGG | + | chr2.2:67528247-67528266 | MS.gene01559:CDS | 55.0% | |
ATCCTCAAGACTTGGCGGCT+TGG | - | chr2.2:67528312-67528331 | None:intergenic | 55.0% | |
CAAAGATACTGGACGGCTGG+TGG | + | chr2.2:67528245-67528264 | MS.gene01559:CDS | 55.0% | |
CCGCCAAGTCTTGAGGATAG+CGG | + | chr2.2:67528314-67528333 | MS.gene01559:CDS | 55.0% | |
CCGCTATCCTCAAGACTTGG+CGG | - | chr2.2:67528317-67528336 | None:intergenic | 55.0% | |
CTGCTCCAACCGGAACGTTA+CGG | - | chr2.2:67528277-67528296 | None:intergenic | 55.0% | |
TCCAACCGGAACGTTACGGA+GGG | - | chr2.2:67528273-67528292 | None:intergenic | 55.0% | |
CGTAACGTTCCGGTTGGAGC+AGG | + | chr2.2:67528275-67528294 | MS.gene01559:CDS | 60.0% | |
CTCCAACCGGAACGTTACGG+AGG | - | chr2.2:67528274-67528293 | None:intergenic | 60.0% | |
TTCCGGTTGGAGCAGGTCGT+CGG | + | chr2.2:67528282-67528301 | MS.gene01559:CDS | 60.0% | |
! | TATTTTCCGGCAAGCGGCGG+AGG | + | chr2.2:67528438-67528457 | MS.gene01559:CDS | 60.0% |
AAGCGGCGGAGGAAGACCTC+AGG | + | chr2.2:67528449-67528468 | MS.gene01559:CDS | 65.0% | |
CTCCGACGACCTGCTCCAAC+CGG | - | chr2.2:67528287-67528306 | None:intergenic | 65.0% | |
GCCCTCCGTAACGTTCCGGT+TGG | + | chr2.2:67528269-67528288 | MS.gene01559:CDS | 65.0% | |
GGCCAAGCCGCCAAGTCTTG+AGG | + | chr2.2:67528307-67528326 | MS.gene01559:CDS | 65.0% | |
GGTTGGAGCAGGTCGTCGGA+GGG | + | chr2.2:67528286-67528305 | MS.gene01559:CDS | 65.0% | |
TGGGGCCCTCCGTAACGTTC+CGG | + | chr2.2:67528265-67528284 | MS.gene01559:CDS | 65.0% | |
CGGCGGAGGAAGACCTCAGG+TGG | + | chr2.2:67528452-67528471 | MS.gene01559:CDS | 70.0% | |
CGGTTGGAGCAGGTCGTCGG+AGG | + | chr2.2:67528285-67528304 | MS.gene01559:CDS | 70.0% | |
GGTCTTCCTCCGCCGCTTGC+CGG | - | chr2.2:67528447-67528466 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 67528017 | 67528499 | 67528017 | ID=MS.gene01559 |
chr2.2 | mRNA | 67528017 | 67528499 | 67528017 | ID=MS.gene01559.t1;Parent=MS.gene01559 |
chr2.2 | exon | 67528017 | 67528499 | 67528017 | ID=MS.gene01559.t1.exon1;Parent=MS.gene01559.t1 |
chr2.2 | CDS | 67528017 | 67528499 | 67528017 | ID=cds.MS.gene01559.t1;Parent=MS.gene01559.t1 |
Gene Sequence |
Protein sequence |