AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01562

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01562.t1 MTR_2g016140 94.624 186 10 0 1 186 1 186 1.78e-132 377
MS.gene01562.t1 MTR_2g016140 96.875 64 2 0 182 245 250 313 1.23e-35 129
MS.gene01562.t1 MTR_2g016140 94.624 186 10 0 1 186 1 186 1.83e-132 376
MS.gene01562.t1 MTR_2g016140 98.413 63 1 0 182 244 250 312 1.47e-35 129
MS.gene01562.t1 MTR_4g079960 50.171 293 87 7 11 249 19 306 7.66e-78 238
MS.gene01562.t1 MTR_4g079960 50.519 289 84 7 11 245 19 302 1.14e-77 237
MS.gene01562.t1 MTR_4g079960 50.699 286 82 7 19 250 27 307 1.86e-77 237
MS.gene01562.t1 MTR_8g022290 40.794 277 109 6 19 241 64 339 4.38e-49 166
MS.gene01562.t1 MTR_2g092960 44.776 134 70 3 11 144 34 163 8.98e-29 114
MS.gene01562.t1 MTR_6g486270 28.384 229 139 7 23 236 130 348 4.31e-26 104
MS.gene01562.t1 MTR_2g102227 31.799 239 140 7 14 237 263 493 1.48e-24 102
MS.gene01562.t1 MTR_1g061600 37.624 101 57 3 23 122 133 228 4.70e-17 80.5
MS.gene01562.t1 MTR_1g037650 36.735 98 55 2 18 115 33 123 2.83e-14 69.3
MS.gene01562.t1 MTR_3g014280 37.755 98 54 2 18 115 33 123 8.71e-14 70.1
MS.gene01562.t1 MTR_5g017500 23.529 221 134 8 23 232 22 218 3.17e-12 64.7
MS.gene01562.t1 MTR_4g117990 31.915 94 62 2 22 114 43 135 7.60e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01562.t1 AT3G58630 42.384 302 99 7 3 237 2 295 4.02e-63 200
MS.gene01562.t1 AT3G58630 42.333 300 102 6 3 237 2 295 6.85e-63 199
MS.gene01562.t1 AT5G05550 43.388 242 110 6 19 248 20 246 6.10e-50 164
MS.gene01562.t1 AT5G05550 44.635 233 102 6 19 239 20 237 8.27e-50 164
MS.gene01562.t1 AT5G05550 44.635 233 102 6 19 239 20 237 1.40e-49 163
MS.gene01562.t1 AT3G11100 41.880 234 112 5 19 239 18 240 5.86e-47 156
MS.gene01562.t1 AT3G14180 50.000 126 58 3 19 142 80 202 2.56e-35 130
MS.gene01562.t1 AT3G14180 46.970 66 33 1 184 247 356 421 2.36e-12 66.6
MS.gene01562.t1 AT3G24490 30.317 221 139 4 23 236 90 302 1.44e-27 108
MS.gene01562.t1 AT1G54060 51.020 98 44 2 19 116 90 183 1.18e-21 92.8
MS.gene01562.t1 AT3G10030 35.433 127 74 3 23 145 161 283 2.44e-20 90.1
MS.gene01562.t1 AT3G10030 35.433 127 74 3 23 145 161 283 2.51e-20 90.1
MS.gene01562.t1 AT3G54390 26.071 280 137 10 5 235 16 274 1.87e-19 85.9
MS.gene01562.t1 AT3G54390 26.786 280 135 11 5 235 32 290 1.95e-19 85.9
MS.gene01562.t1 AT2G44730 32.979 94 61 2 22 114 63 155 4.73e-11 62.4

Find 64 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAGGATGCAGATGTTTA+TGG 0.218617 2.2:+67453062 MS.gene01562:CDS
CATCGGAAATTTGCTAATTC+TGG 0.236718 2.2:+67452634 MS.gene01562:CDS
ACTGAGGCAGATGGTGGATT+TGG 0.320650 2.2:+67453002 MS.gene01562:CDS
AACTTCTTAGCACTGAAATT+AGG 0.324747 2.2:-67452550 None:intergenic
TTCCACTCTCGTCGATGCAT+GGG 0.378747 2.2:+67452285 MS.gene01562:CDS
GACCAACAATCCTCGCGAAC+GGG 0.390355 2.2:-67452250 None:intergenic
CTTCCACTCTCGTCGATGCA+TGG 0.395037 2.2:+67452284 MS.gene01562:CDS
GTGGAATGTACCGCAATTGC+AGG 0.408758 2.2:-67452670 None:intergenic
GCGAAGGCGATAGAGAGTTT+TGG 0.411580 2.2:+67452949 MS.gene01562:intron
ATTAAGCGTGGAAAACCATC+TGG 0.413416 2.2:+67453108 MS.gene01562:CDS
ATCAATTTCTTCACCGGTGG+CGG 0.426236 2.2:+67452573 MS.gene01562:CDS
AAAGAATCGTGGTGAAAATC+CGG 0.442007 2.2:-67452205 None:intergenic
GGAAAACCATCTGGGTCTAA+TGG 0.443061 2.2:+67453117 MS.gene01562:CDS
GTAATCTTCGTCAGAAAGAT+TGG 0.446554 2.2:+67452335 MS.gene01562:CDS
TCCCCGTTCGCGAGGATTGT+TGG 0.451755 2.2:+67452248 MS.gene01562:CDS
GGCGGTGACACCGTCGCCTC+CGG 0.452209 2.2:+67452591 MS.gene01562:CDS
GAAGTTATCAATTTCTTCAC+CGG 0.471334 2.2:+67452567 MS.gene01562:CDS
GATGCTGTTAACGCTCTTCA+TGG 0.472381 2.2:+67452370 MS.gene01562:CDS
GCTAGGGTTACGGAATCTAA+TGG 0.474097 2.2:+67452475 MS.gene01562:CDS
TATGGATACTCAAGTTCAGC+TGG 0.498348 2.2:+67453080 MS.gene01562:CDS
CGGAAATTTGCTAATTCTGG+TGG 0.506455 2.2:+67452637 MS.gene01562:CDS
CTCTTCCGTTGATTCCTCAT+CGG 0.506683 2.2:+67452617 MS.gene01562:CDS
CGTGGCTGCGGCTACTGCTA+CGG 0.507470 2.2:+67452729 MS.gene01562:CDS
GGCGACGGTGTCACCGCCAC+CGG 0.524853 2.2:-67452586 None:intergenic
GAATTATTCTGCCGTGGCTG+CGG 0.538446 2.2:+67452717 MS.gene01562:CDS
TGGTGAAATGTATGAGAGAG+TGG 0.540008 2.2:+67452969 MS.gene01562:CDS
ACAAAGGATGCAGTTTGCTA+AGG 0.543201 2.2:+67453029 MS.gene01562:CDS
GGAAGAGCCACCGGAGGCGA+CGG 0.553904 2.2:-67452601 None:intergenic
ACAATCCTCGCGAACGGGGA+CGG 0.571999 2.2:-67452245 None:intergenic
TCGTCGATGCATGGGGTCGT+CGG 0.574131 2.2:+67452293 MS.gene01562:CDS
CGTAGCAGTAGCCGCAGCCA+CGG 0.576525 2.2:-67452728 None:intergenic
TGACCAACAATCCTCGCGAA+CGG 0.577799 2.2:-67452251 None:intergenic
GGAATCAACGGAAGAGCCAC+CGG 0.582868 2.2:-67452610 None:intergenic
ATCTCACCATTAGACCCAGA+TGG 0.584691 2.2:-67453123 None:intergenic
CTAAGGATCTTGAAGTGCAG+AGG 0.587711 2.2:+67453046 MS.gene01562:CDS
TTATTCATCACCTGCAATTG+CGG 0.591019 2.2:+67452660 MS.gene01562:CDS
CGAACGGGGACGGTGCGTGA+CGG 0.602447 2.2:-67452235 None:intergenic
GCAGAATAATTCCTCTTCTG+AGG 0.603793 2.2:-67452706 None:intergenic
TGGTGGATTTGGAGAAACAA+AGG 0.604782 2.2:+67453013 MS.gene01562:CDS
ACGGGGACGGTGCGTGACGG+TGG 0.605580 2.2:-67452232 None:intergenic
ACCCCATGCATCGACGAGAG+TGG 0.606737 2.2:-67452287 None:intergenic
ACGCACCGTCCCCGTTCGCG+AGG 0.609985 2.2:+67452240 MS.gene01562:CDS
GAAGAGGAATTATTCTGCCG+TGG 0.613185 2.2:+67452711 MS.gene01562:CDS
TCGTGGTGAAAATCCGGCAT+CGG 0.613818 2.2:-67452199 None:intergenic
ACAGAAACTGAGGCAGATGG+TGG 0.614677 2.2:+67452996 MS.gene01562:CDS
GGTGACACCGTCGCCTCCGG+TGG 0.615400 2.2:+67452594 MS.gene01562:CDS
AATTTCCGATGAGGAATCAA+CGG 0.616061 2.2:-67452622 None:intergenic
CGGTGGCGTTACCTCAGAAG+AGG 0.617929 2.2:+67452695 MS.gene01562:CDS
GTTATCAATTTCTTCACCGG+TGG 0.628483 2.2:+67452570 MS.gene01562:CDS
GAGTGGAAGAACAGAAACTG+AGG 0.631673 2.2:+67452986 MS.gene01562:CDS
AGAACAGAAACTGAGGCAGA+TGG 0.635950 2.2:+67452993 MS.gene01562:CDS
TCCACTCTCGTCGATGCATG+GGG 0.638750 2.2:+67452286 MS.gene01562:CDS
TGCGGTACATTCCACCGCGG+TGG 0.640964 2.2:+67452678 MS.gene01562:CDS
GAATTAGCAAATTTCCGATG+AGG 0.643473 2.2:-67452631 None:intergenic
CTGAGGTAACGCCACCGCGG+TGG 0.646102 2.2:-67452689 None:intergenic
TTAAGCGTGGAAAACCATCT+GGG 0.647441 2.2:+67453109 MS.gene01562:CDS
ATCAACGGAAGAGCCACCGG+AGG 0.652573 2.2:-67452607 None:intergenic
ACCAACAATCCTCGCGAACG+GGG 0.660501 2.2:-67452249 None:intergenic
CTTTCTGACGAAGATTACCA+CGG 0.666897 2.2:-67452330 None:intergenic
CGGTATCTTGAACTCAACCG+TGG 0.727584 2.2:+67452313 MS.gene01562:CDS
CAGCTGGAGAGAATTAAGCG+TGG 0.736726 2.2:+67453096 MS.gene01562:CDS
CTTCTGAGGTAACGCCACCG+CGG 0.741340 2.2:-67452692 None:intergenic
ACGGTGGTGTGAAAGAATCG+TGG 0.749435 2.2:-67452216 None:intergenic
AATTGCGGTACATTCCACCG+CGG 0.821763 2.2:+67452675 MS.gene01562:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACGATTAAGAAAAAGTATA+AGG + chr2.2:67452444-67452463 MS.gene01562:CDS 20.0%
! TATCAAATCACAAGCTAAAA+GGG - chr2.2:67453190-67453209 None:intergenic 25.0%
! TTATCAAATCACAAGCTAAA+AGG - chr2.2:67453191-67453210 None:intergenic 25.0%
!!! ATGGTGTTTTGAATTCTAAT+TGG + chr2.2:67452494-67452513 MS.gene01562:CDS 25.0%
ACATCTAACCGTTCAAAAAA+AGG - chr2.2:67452520-67452539 None:intergenic 30.0%
AGTATAAGGTTGAAAAAGCT+AGG + chr2.2:67452458-67452477 MS.gene01562:CDS 30.0%
ATCAAATCACAAGCTAAAAG+GGG - chr2.2:67453189-67453208 None:intergenic 30.0%
GAAGTTATCAATTTCTTCAC+CGG + chr2.2:67452567-67452586 MS.gene01562:CDS 30.0%
GTATAAGGTTGAAAAAGCTA+GGG + chr2.2:67452459-67452478 MS.gene01562:CDS 30.0%
! AACTTCTTAGCACTGAAATT+AGG - chr2.2:67452553-67452572 None:intergenic 30.0%
!! TTTTAGGAGGAATTATTCTG+CGG + chr2.2:67452768-67452787 MS.gene01562:intron 30.0%
!!! CTAATTGGCCTTTTTTTGAA+CGG + chr2.2:67452509-67452528 MS.gene01562:CDS 30.0%
AAAGAATCGTGGTGAAAATC+CGG - chr2.2:67452208-67452227 None:intergenic 35.0%
AATTTCCGATGAGGAATCAA+CGG - chr2.2:67452625-67452644 None:intergenic 35.0%
GAATTAGCAAATTTCCGATG+AGG - chr2.2:67452634-67452653 None:intergenic 35.0%
GTAATCTTCGTCAGAAAGAT+TGG + chr2.2:67452335-67452354 MS.gene01562:CDS 35.0%
TTATTCATCACCTGCAATTG+CGG + chr2.2:67452660-67452679 MS.gene01562:CDS 35.0%
!! CATCGGAAATTTGCTAATTC+TGG + chr2.2:67452634-67452653 MS.gene01562:CDS 35.0%
!!! GAACGGTTAGATGTTTTGAT+TGG + chr2.2:67452526-67452545 MS.gene01562:CDS 35.0%
!!! TGATGGATGATGGGTATTTT+AGG + chr2.2:67452752-67452771 MS.gene01562:intron 35.0%
AAGTGGATGAAGGGGATAAA+GGG + chr2.2:67452905-67452924 MS.gene01562:intron 40.0%
ATTAAGCGTGGAAAACCATC+TGG + chr2.2:67453108-67453127 MS.gene01562:CDS 40.0%
CTTTCTGACGAAGATTACCA+CGG - chr2.2:67452333-67452352 None:intergenic 40.0%
GCAGAATAATTCCTCTTCTG+AGG - chr2.2:67452709-67452728 None:intergenic 40.0%
GGTTGAAAAAGCTAGGGTTA+CGG + chr2.2:67452465-67452484 MS.gene01562:CDS 40.0%
GTTATCAATTTCTTCACCGG+TGG + chr2.2:67452570-67452589 MS.gene01562:CDS 40.0%
TATGGATACTCAAGTTCAGC+TGG + chr2.2:67453080-67453099 MS.gene01562:CDS 40.0%
TGGTGAAATGTATGAGAGAG+TGG + chr2.2:67452969-67452988 MS.gene01562:CDS 40.0%
TTAAGCGTGGAAAACCATCT+GGG + chr2.2:67453109-67453128 MS.gene01562:CDS 40.0%
! ATCTGTGCGATGAGTTTTCT+TGG - chr2.2:67452401-67452420 None:intergenic 40.0%
!! ACAAAGGATGCAGTTTGCTA+AGG + chr2.2:67453029-67453048 MS.gene01562:CDS 40.0%
!! CGGAAATTTGCTAATTCTGG+TGG + chr2.2:67452637-67452656 MS.gene01562:CDS 40.0%
!! TGGTGGATTTGGAGAAACAA+AGG + chr2.2:67453013-67453032 MS.gene01562:CDS 40.0%
!!! TGGATGATGGGTATTTTAGG+AGG + chr2.2:67452755-67452774 MS.gene01562:intron 40.0%
AAGGGGATAAAGGGAGAGAA+GGG + chr2.2:67452914-67452933 MS.gene01562:intron 45.0%
AGAACAGAAACTGAGGCAGA+TGG + chr2.2:67452993-67453012 MS.gene01562:CDS 45.0%
ATCAATTTCTTCACCGGTGG+CGG + chr2.2:67452573-67452592 MS.gene01562:CDS 45.0%
ATCTCACCATTAGACCCAGA+TGG - chr2.2:67453126-67453145 None:intergenic 45.0%
CTAAGGATCTTGAAGTGCAG+AGG + chr2.2:67453046-67453065 MS.gene01562:CDS 45.0%
GAAGAGGAATTATTCTGCCG+TGG + chr2.2:67452711-67452730 MS.gene01562:CDS 45.0%
GAAGTGGATGAAGGGGATAA+AGG + chr2.2:67452904-67452923 MS.gene01562:intron 45.0%
GAGTGGAAGAACAGAAACTG+AGG + chr2.2:67452986-67453005 MS.gene01562:CDS 45.0%
GATGCTGTTAACGCTCTTCA+TGG + chr2.2:67452370-67452389 MS.gene01562:CDS 45.0%
GCAGAGGATGCAGATGTTTA+TGG + chr2.2:67453062-67453081 MS.gene01562:CDS 45.0%
GCTAGGGTTACGGAATCTAA+TGG + chr2.2:67452475-67452494 MS.gene01562:CDS 45.0%
GGAAAACCATCTGGGTCTAA+TGG + chr2.2:67453117-67453136 MS.gene01562:CDS 45.0%
TGGAAGTAGAGGAAGAGGAA+GGG + chr2.2:67452872-67452891 MS.gene01562:intron 45.0%
! AGCTGATGAGGATGATGATG+AGG + chr2.2:67452816-67452835 MS.gene01562:intron 45.0%
! GGATGATGATGAGGATGATG+AGG + chr2.2:67452825-67452844 MS.gene01562:intron 45.0%
! TGATGATGAGGATGATGAGG+TGG + chr2.2:67452828-67452847 MS.gene01562:intron 45.0%
!! CTCTTCCGTTGATTCCTCAT+CGG + chr2.2:67452617-67452636 MS.gene01562:CDS 45.0%
AAGGGAGAGAAGGGATGAAG+AGG + chr2.2:67452923-67452942 MS.gene01562:intron 50.0%
AAGTAGAGGAAGAGGAAGGG+AGG + chr2.2:67452875-67452894 MS.gene01562:intron 50.0%
AATTGCGGTACATTCCACCG+CGG + chr2.2:67452675-67452694 MS.gene01562:CDS 50.0%
ACAGAAACTGAGGCAGATGG+TGG + chr2.2:67452996-67453015 MS.gene01562:CDS 50.0%
ACGGTGGTGTGAAAGAATCG+TGG - chr2.2:67452219-67452238 None:intergenic 50.0%
AGAGGTGGAAGTAGAGGAAG+AGG + chr2.2:67452867-67452886 MS.gene01562:intron 50.0%
AGTAGAGGAAGAGGAAGGGA+GGG + chr2.2:67452876-67452895 MS.gene01562:intron 50.0%
CAGCTGGAGAGAATTAAGCG+TGG + chr2.2:67453096-67453115 MS.gene01562:CDS 50.0%
CGGTATCTTGAACTCAACCG+TGG + chr2.2:67452313-67452332 MS.gene01562:CDS 50.0%
GAAGGGGATAAAGGGAGAGA+AGG + chr2.2:67452913-67452932 MS.gene01562:intron 50.0%
GAATTATTCTGCCGTGGCTG+CGG + chr2.2:67452717-67452736 MS.gene01562:CDS 50.0%
GAGAGAAGGGATGAAGAGGT+TGG + chr2.2:67452927-67452946 MS.gene01562:intron 50.0%
GTGGAAGTAGAGGAAGAGGA+AGG + chr2.2:67452871-67452890 MS.gene01562:intron 50.0%
GTGGAATGTACCGCAATTGC+AGG - chr2.2:67452673-67452692 None:intergenic 50.0%
TGACCAACAATCCTCGCGAA+CGG - chr2.2:67452254-67452273 None:intergenic 50.0%
TGATGAGGATGATGAGGTGG+AGG + chr2.2:67452831-67452850 MS.gene01562:intron 50.0%
TGATGAGGTGGAGGAAGTTG+AGG + chr2.2:67452840-67452859 MS.gene01562:intron 50.0%
TTCCACTCTCGTCGATGCAT+GGG + chr2.2:67452285-67452304 MS.gene01562:CDS 50.0%
! GCGAAGGCGATAGAGAGTTT+TGG + chr2.2:67452949-67452968 MS.gene01562:intron 50.0%
!! ACTGAGGCAGATGGTGGATT+TGG + chr2.2:67453002-67453021 MS.gene01562:CDS 50.0%
!! ACTGCTACGGTGATGGATGA+TGG + chr2.2:67452742-67452761 MS.gene01562:intron 50.0%
!! CTGCTACGGTGATGGATGAT+GGG + chr2.2:67452743-67452762 MS.gene01562:intron 50.0%
ACCAACAATCCTCGCGAACG+GGG - chr2.2:67452252-67452271 None:intergenic 55.0%
AGGGATGAAGAGGTTGGCGA+AGG + chr2.2:67452933-67452952 MS.gene01562:intron 55.0%
AGGGGGAGTGAAGTGGATGA+AGG + chr2.2:67452895-67452914 MS.gene01562:intron 55.0%
CTTCCACTCTCGTCGATGCA+TGG + chr2.2:67452284-67452303 MS.gene01562:CDS 55.0%
GACCAACAATCCTCGCGAAC+GGG - chr2.2:67452253-67452272 None:intergenic 55.0%
GGAAGTTGAGGAGGAAGAGG+TGG + chr2.2:67452852-67452871 MS.gene01562:intron 55.0%
GGAATCAACGGAAGAGCCAC+CGG - chr2.2:67452613-67452632 None:intergenic 55.0%
GGAGGAAGAGGTGGAAGTAG+AGG + chr2.2:67452861-67452880 MS.gene01562:intron 55.0%
GGAGGAAGTTGAGGAGGAAG+AGG + chr2.2:67452849-67452868 MS.gene01562:intron 55.0%
GGGGAGTGAAGTGGATGAAG+GGG + chr2.2:67452897-67452916 MS.gene01562:intron 55.0%
GGGGGAGTGAAGTGGATGAA+GGG + chr2.2:67452896-67452915 MS.gene01562:intron 55.0%
GTAGAGGAAGAGGAAGGGAG+GGG + chr2.2:67452877-67452896 MS.gene01562:intron 55.0%
TAGAGGAAGAGGAAGGGAGG+GGG + chr2.2:67452878-67452897 MS.gene01562:intron 55.0%
TCCACTCTCGTCGATGCATG+GGG + chr2.2:67452286-67452305 MS.gene01562:CDS 55.0%
TGAGGTGGAGGAAGTTGAGG+AGG + chr2.2:67452843-67452862 MS.gene01562:intron 55.0%
ACAATCCTCGCGAACGGGGA+CGG - chr2.2:67452248-67452267 None:intergenic 60.0%
ATCAACGGAAGAGCCACCGG+AGG - chr2.2:67452610-67452629 None:intergenic 60.0%
ATCAGCTTCCGCAGCAGCAG+CGG - chr2.2:67452803-67452822 None:intergenic 60.0%
CGGTGGCGTTACCTCAGAAG+AGG + chr2.2:67452695-67452714 MS.gene01562:CDS 60.0%
TCCCCGTTCGCGAGGATTGT+TGG + chr2.2:67452248-67452267 MS.gene01562:CDS 60.0%
TCGTCGATGCATGGGGTCGT+CGG + chr2.2:67452293-67452312 MS.gene01562:CDS 60.0%
TGCGGCTACTGCTACGGTGA+TGG + chr2.2:67452735-67452754 MS.gene01562:intron 60.0%
TGCTGCTGCGGAAGCTGATG+AGG + chr2.2:67452804-67452823 MS.gene01562:intron 60.0%
! ACCCCATGCATCGACGAGAG+TGG - chr2.2:67452290-67452309 None:intergenic 60.0%
!! CTTCTGAGGTAACGCCACCG+CGG - chr2.2:67452695-67452714 None:intergenic 60.0%
CGTAGCAGTAGCCGCAGCCA+CGG - chr2.2:67452731-67452750 None:intergenic 65.0%
CGTGGCTGCGGCTACTGCTA+CGG + chr2.2:67452729-67452748 MS.gene01562:CDS 65.0%
GGAAGGGAGGGGGAGTGAAG+TGG + chr2.2:67452888-67452907 MS.gene01562:intron 65.0%
TGCGGTACATTCCACCGCGG+TGG + chr2.2:67452678-67452697 MS.gene01562:CDS 65.0%
AGCTGCAGCCGCTGCTGCTG+CGG + chr2.2:67452792-67452811 MS.gene01562:intron 70.0%
CGAACGGGGACGGTGCGTGA+CGG - chr2.2:67452238-67452257 None:intergenic 70.0%
CTGAGGTAACGCCACCGCGG+TGG - chr2.2:67452692-67452711 None:intergenic 70.0%
GGAAGAGCCACCGGAGGCGA+CGG - chr2.2:67452604-67452623 None:intergenic 70.0%
ACGCACCGTCCCCGTTCGCG+AGG + chr2.2:67452240-67452259 MS.gene01562:CDS 75.0%
ACGGGGACGGTGCGTGACGG+TGG - chr2.2:67452235-67452254 None:intergenic 75.0%
GGCGGTGACACCGTCGCCTC+CGG + chr2.2:67452591-67452610 MS.gene01562:CDS 75.0%
GGTGACACCGTCGCCTCCGG+TGG + chr2.2:67452594-67452613 MS.gene01562:CDS 75.0%
!! GGCGACGGTGTCACCGCCAC+CGG - chr2.2:67452589-67452608 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 67452202 67453215 67452202 ID=MS.gene01562
chr2.2 mRNA 67452202 67453215 67452202 ID=MS.gene01562.t1;Parent=MS.gene01562
chr2.2 exon 67452202 67452750 67452202 ID=MS.gene01562.t1.exon1;Parent=MS.gene01562.t1
chr2.2 CDS 67452202 67452750 67452202 ID=cds.MS.gene01562.t1;Parent=MS.gene01562.t1
chr2.2 exon 67452955 67453138 67452955 ID=MS.gene01562.t1.exon2;Parent=MS.gene01562.t1
chr2.2 CDS 67452955 67453138 67452955 ID=cds.MS.gene01562.t1;Parent=MS.gene01562.t1
chr2.2 exon 67453196 67453215 67453196 ID=MS.gene01562.t1.exon3;Parent=MS.gene01562.t1
chr2.2 CDS 67453196 67453215 67453196 ID=cds.MS.gene01562.t1;Parent=MS.gene01562.t1
Gene Sequence

>MS.gene01562

ATGCCGGATTTTCACCACGATTCTTTCACACCACCGTCACGCACCGTCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCCACTCTCGTCGATGCATGGGGTCGTCGGTATCTTGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACCAAGAAAACTCATCGCACAGATGTTCAGTGTAAGAATCGAATCGATACGATTAAGAAAAAGTATAAGGTTGAAAAAGCTAGGGTTACGGAATCTAATGGTGTTTTGAATTCTAATTGGCCTTTTTTTGAACGGTTAGATGTTTTGATTGGACCTAATTTCAGTGCTAAGAAGTTATCAATTTCTTCACCGGTGGCGGTGACACCGTCGCCTCCGGTGGCTCTTCCGTTGATTCCTCATCGGAAATTTGCTAATTCTGGTGGTTATTCATCACCTGCAATTGCGGTACATTCCACCGCGGTGGCGTTACCTCAGAAGAGGAATTATTCTGCCGTGGCTGCGGCTACTGCTACGGTGATGGATGATGGGTATTTTAGGAGGAATTATTCTGCGGTAGCTGCAGCCGCTGCTGCTGCGGAAGCTGATGAGGATGATGATGAGGATGATGAGGTGGAGGAAGTTGAGGAGGAAGAGGTGGAAGTAGAGGAAGAGGAAGGGAGGGGGAGTGAAGTGGATGAAGGGGATAAAGGGAGAGAAGGGATGAAGAGGTTGGCGAAGGCGATAGAGAGTTTTGGTGAAATGTATGAGAGAGTGGAAGAACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGCAGTTTGCTAAGGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGATACTCAAGTTCAGCTGGAGAGAATTAAGCGTGGAAAACCATCTGGGTCTAATGGTGAGATATAAAGTAAAGTAATTTAAGCTTTTTAATTGTTTTTGTTTCCCCTTTTAGCTTGTGATTTGATAATTTAA
Protein sequence

>MS.gene01562.t1

MPDFHHDSFTPPSRTVPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTESNGVLNSNWPFFERLDVLIGPNFSAKKLSISSPVAVTPSPPVALPLIPHRKFANSGGYSSPAIAVHSTAVALPQKRNYSAVAAATATAIESFGEMYERVEEQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKPSGSNACDLII