Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015620.t1 | XP_003630992.1 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 9.10E-137 | 496.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015620.t1 | G7LBI1 | 97.5 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 6.5e-137 | 496.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015620.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015620.t1 | MTR_8g105930 | 97.510 | 241 | 6 | 0 | 1 | 241 | 1 | 241 | 6.63e-179 | 491 |
| MS.gene015620.t1 | MTR_1g032880 | 41.837 | 196 | 66 | 2 | 46 | 241 | 16 | 163 | 1.04e-40 | 137 |
| MS.gene015620.t1 | MTR_4g116300 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 6.33e-21 | 88.6 |
| MS.gene015620.t1 | MTR_2g055210 | 30.345 | 145 | 78 | 4 | 15 | 158 | 104 | 226 | 1.69e-19 | 86.3 |
| MS.gene015620.t1 | MTR_4g094680 | 32.738 | 168 | 95 | 5 | 15 | 181 | 24 | 174 | 3.73e-19 | 83.6 |
| MS.gene015620.t1 | MTR_1g062160 | 35.374 | 147 | 71 | 6 | 15 | 158 | 9 | 134 | 6.71e-19 | 82.0 |
| MS.gene015620.t1 | MTR_5g030130 | 35.616 | 146 | 71 | 5 | 15 | 158 | 37 | 161 | 2.58e-17 | 78.6 |
| MS.gene015620.t1 | MTR_5g030130 | 34.932 | 146 | 72 | 5 | 15 | 158 | 37 | 161 | 6.13e-17 | 76.6 |
| MS.gene015620.t1 | MTR_7g102790 | 33.974 | 156 | 77 | 6 | 15 | 165 | 9 | 143 | 7.23e-17 | 76.6 |
| MS.gene015620.t1 | MTR_2g036170 | 33.793 | 145 | 68 | 4 | 15 | 158 | 39 | 156 | 8.31e-17 | 77.4 |
| MS.gene015620.t1 | MTR_4g078170 | 34.932 | 146 | 72 | 5 | 15 | 158 | 17 | 141 | 8.40e-17 | 76.6 |
| MS.gene015620.t1 | MTR_8g066820 | 34.932 | 146 | 72 | 5 | 15 | 158 | 35 | 159 | 4.84e-16 | 75.1 |
| MS.gene015620.t1 | MTR_5g007230 | 32.877 | 146 | 75 | 5 | 15 | 158 | 23 | 147 | 1.18e-15 | 73.6 |
| MS.gene015620.t1 | MTR_2g084510 | 31.210 | 157 | 91 | 5 | 13 | 165 | 3 | 146 | 8.08e-15 | 72.0 |
| MS.gene015620.t1 | MTR_2g084525 | 29.936 | 157 | 93 | 5 | 13 | 165 | 4 | 147 | 3.50e-14 | 70.1 |
| MS.gene015620.t1 | MTR_2g060540 | 29.530 | 149 | 88 | 5 | 13 | 157 | 10 | 145 | 2.64e-12 | 63.2 |
| MS.gene015620.t1 | MTR_2g060500 | 29.530 | 149 | 88 | 5 | 13 | 157 | 10 | 145 | 3.34e-12 | 62.8 |
| MS.gene015620.t1 | MTR_2g084495 | 34.021 | 97 | 60 | 3 | 13 | 105 | 4 | 100 | 2.08e-11 | 62.0 |
| MS.gene015620.t1 | MTR_8g097310 | 31.250 | 112 | 54 | 3 | 50 | 158 | 4 | 95 | 2.53e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015620.t1 | AT2G01818 | 43.421 | 152 | 66 | 4 | 15 | 161 | 13 | 149 | 9.06e-36 | 127 |
| MS.gene015620.t1 | AT3G60670 | 33.333 | 147 | 76 | 3 | 15 | 160 | 9 | 134 | 4.23e-22 | 91.7 |
| MS.gene015620.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.06e-20 | 88.2 |
| MS.gene015620.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 8 | 131 | 1.06e-20 | 88.2 |
| MS.gene015620.t1 | AT2G12646 | 33.793 | 145 | 74 | 3 | 15 | 158 | 5 | 128 | 1.08e-20 | 88.2 |
| MS.gene015620.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 18 | 143 | 1.71e-18 | 82.0 |
| MS.gene015620.t1 | AT1G21000 | 36.735 | 147 | 70 | 5 | 15 | 159 | 15 | 140 | 1.73e-18 | 82.0 |
| MS.gene015620.t1 | AT1G43000 | 31.760 | 233 | 122 | 11 | 15 | 237 | 18 | 223 | 5.47e-18 | 80.1 |
| MS.gene015620.t1 | AT1G43000 | 31.760 | 233 | 122 | 11 | 15 | 237 | 11 | 216 | 6.63e-18 | 79.7 |
| MS.gene015620.t1 | AT1G76590 | 38.060 | 134 | 61 | 4 | 27 | 159 | 33 | 145 | 2.36e-17 | 79.0 |
| MS.gene015620.t1 | AT4G17900 | 31.875 | 160 | 87 | 4 | 2 | 159 | 23 | 162 | 4.20e-17 | 77.8 |
| MS.gene015620.t1 | AT1G31040 | 30.675 | 163 | 90 | 3 | 15 | 176 | 21 | 161 | 6.74e-17 | 77.8 |
| MS.gene015620.t1 | AT4G17900 | 33.333 | 147 | 76 | 4 | 15 | 159 | 22 | 148 | 7.84e-17 | 77.0 |
| MS.gene015620.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 5.61e-16 | 73.6 |
| MS.gene015620.t1 | AT2G27930 | 33.333 | 150 | 85 | 5 | 15 | 161 | 6 | 143 | 5.61e-16 | 73.6 |
| MS.gene015620.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 2.03e-15 | 72.4 |
| MS.gene015620.t1 | AT2G27930 | 33.333 | 147 | 83 | 5 | 15 | 158 | 6 | 140 | 2.03e-15 | 72.4 |
| MS.gene015620.t1 | AT5G46710 | 31.902 | 163 | 84 | 5 | 1 | 161 | 21 | 158 | 2.35e-15 | 71.6 |
| MS.gene015620.t1 | AT2G01818 | 39.175 | 97 | 44 | 2 | 65 | 161 | 4 | 85 | 3.56e-15 | 71.2 |
| MS.gene015620.t1 | AT5G46710 | 31.677 | 161 | 83 | 5 | 1 | 159 | 21 | 156 | 8.21e-15 | 71.6 |
| MS.gene015620.t1 | AT1G32700 | 31.447 | 159 | 86 | 5 | 2 | 158 | 1 | 138 | 1.20e-14 | 70.9 |
| MS.gene015620.t1 | AT5G46710 | 31.447 | 159 | 82 | 5 | 3 | 159 | 7 | 140 | 2.08e-14 | 70.1 |
| MS.gene015620.t1 | AT1G32700 | 35.294 | 119 | 55 | 4 | 41 | 158 | 2 | 99 | 7.71e-12 | 62.4 |
Find 44 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGATAAGTTGCTTTCTT+TGG | 0.204312 | 4.1:+1317870 | None:intergenic |
| ATGATTCCGGTTCCGAATTA+AGG | 0.235495 | 4.1:+1317548 | None:intergenic |
| CTTTGACTGCTCAAATATTC+AGG | 0.261064 | 4.1:-1318377 | MS.gene015620:intron |
| GTCCAAATCATCACTCAAAA+AGG | 0.343718 | 4.1:-1317654 | MS.gene015620:CDS |
| AAGCTCATTCTATTCATAGA+AGG | 0.351713 | 4.1:-1318459 | MS.gene015620:CDS |
| GATTTACAGATATTCCTATC+AGG | 0.363443 | 4.1:-1318431 | MS.gene015620:CDS |
| CAATCTATATTCCTTTCCTT+TGG | 0.367572 | 4.1:+1318601 | None:intergenic |
| TGATTTGGACCTTGGCTTTG+AGG | 0.368181 | 4.1:+1317667 | None:intergenic |
| TTGAGTGATGATTTGGACCT+TGG | 0.380468 | 4.1:+1317659 | None:intergenic |
| TATGACTGATAACCTTAATT+CGG | 0.380930 | 4.1:-1317560 | MS.gene015620:CDS |
| GCTTCAGAAATAGATGATTC+CGG | 0.410307 | 4.1:+1317535 | None:intergenic |
| CAAAGGAAAGGAATATAGAT+TGG | 0.423544 | 4.1:-1318600 | MS.gene015620:CDS |
| CTTACATATCGAATAAAGAT+AGG | 0.448689 | 4.1:-1317963 | MS.gene015620:CDS |
| TGATAACCTTAATTCGGAAC+CGG | 0.455008 | 4.1:-1317554 | MS.gene015620:CDS |
| CATAGTAAAGTCAATAGCTT+CGG | 0.480348 | 4.1:+1317579 | None:intergenic |
| GACTTATAGATCGGAGGCCG+AGG | 0.481284 | 4.1:+1317925 | None:intergenic |
| ATGGCGGAAAACATCCTGAT+AGG | 0.486299 | 4.1:+1318417 | None:intergenic |
| GCTCTTATGAATAGTAGCTC+TGG | 0.499499 | 4.1:-1318571 | MS.gene015620:CDS |
| TTATCAGCTAGATTTAAGTC+AGG | 0.519647 | 4.1:-1317856 | MS.gene015620:CDS |
| CCGATCTATAAGTCTAAAGT+TGG | 0.532512 | 4.1:-1317916 | MS.gene015620:CDS |
| TGAAGCTGAGCCATGTGGGC+GGG | 0.537407 | 4.1:-1317518 | MS.gene015620:CDS |
| AGTGCTTCTGCAGCTCAGAA+TGG | 0.561001 | 4.1:+1318398 | None:intergenic |
| CCAACTTTAGACTTATAGAT+CGG | 0.562220 | 4.1:+1317916 | None:intergenic |
| GGCAGTACATGTGAAGAATG+TGG | 0.570625 | 4.1:-1317832 | MS.gene015620:CDS |
| TAAGAAACGAAAACAAAGAC+AGG | 0.585409 | 4.1:+1317445 | None:intergenic |
| GCAGTACATGTGAAGAATGT+GGG | 0.588854 | 4.1:-1317831 | MS.gene015620:CDS |
| CTGAAGCTGAGCCATGTGGG+CGG | 0.592373 | 4.1:-1317519 | MS.gene015620:CDS |
| TCAGCTAGATTTAAGTCAGG+AGG | 0.597898 | 4.1:-1317853 | MS.gene015620:CDS |
| AGGATCAATCACCAAAGGAA+AGG | 0.601046 | 4.1:-1318612 | MS.gene015620:CDS |
| CTGGTGCTCAATTATATGCA+AGG | 0.606595 | 4.1:-1317782 | MS.gene015620:intron |
| GTTGACTCTTTCAACCAAAG+TGG | 0.608258 | 4.1:-1317625 | MS.gene015620:CDS |
| GGATTGTGCATCTCAAACCT+CGG | 0.608993 | 4.1:-1317942 | MS.gene015620:CDS |
| TACAAGATGAGCATAGTCGC+TGG | 0.613510 | 4.1:-1317801 | MS.gene015620:CDS |
| ATAGGGGAGCCTCAAAGCCA+AGG | 0.624380 | 4.1:-1317676 | MS.gene015620:CDS |
| TTTCTGAAGCTGAGCCATGT+GGG | 0.625236 | 4.1:-1317522 | MS.gene015620:CDS |
| ACAACTTCAACCCGCCCACA+TGG | 0.636500 | 4.1:+1317508 | None:intergenic |
| AAAGACAGGCCTCTGAGGAG+TGG | 0.638363 | 4.1:+1317459 | None:intergenic |
| GCTTCTGCAGCTCAGAATGG+CGG | 0.645960 | 4.1:+1318401 | None:intergenic |
| TGATGATGCATCTACCACTT+TGG | 0.646189 | 4.1:+1317611 | None:intergenic |
| GGGGAAGGATCAATCACCAA+AGG | 0.648113 | 4.1:-1318617 | MS.gene015620:CDS |
| ATTGTGCTGTTAGATTCTGT+AGG | 0.654870 | 4.1:-1318492 | MS.gene015620:CDS |
| ATTTCTGAAGCTGAGCCATG+TGG | 0.657682 | 4.1:-1317523 | MS.gene015620:CDS |
| ACTTTAGACTTATAGATCGG+AGG | 0.659735 | 4.1:+1317919 | None:intergenic |
| AAAACAAAGACAGGCCTCTG+AGG | 0.661748 | 4.1:+1317454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATATGAATCAAA+TGG | + | chr4.1:1317635-1317654 | None:intergenic | 10.0% |
| !!! | TTTATTTTTGTTTTAAATGT+TGG | - | chr4.1:1317647-1317666 | MS.gene015620:CDS | 10.0% |
| !! | AATAAACACAATTTATTTCA+TGG | + | chr4.1:1318430-1318449 | None:intergenic | 15.0% |
| !! | TTATTCAATGTAATTTCAAT+AGG | + | chr4.1:1318364-1318383 | None:intergenic | 15.0% |
| !! | AGTTTATGATCAATAACAAT+TGG | + | chr4.1:1318502-1318521 | None:intergenic | 20.0% |
| !!! | ATTGAATAAATTTTCCATGT+GGG | - | chr4.1:1318375-1318394 | MS.gene015620:intron | 20.0% |
| !!! | TATTTTGAATATCTGAGATT+AGG | - | chr4.1:1317749-1317768 | MS.gene015620:intron | 20.0% |
| !!! | TGTTTTGATTTGTTTTAATC+TGG | - | chr4.1:1318289-1318308 | MS.gene015620:intron | 20.0% |
| ! | AATTTATAATTCAACCCACA+TGG | + | chr4.1:1318392-1318411 | None:intergenic | 25.0% |
| ! | CAAAACTTTATAAGAATCCA+TGG | + | chr4.1:1317481-1317500 | None:intergenic | 25.0% |
| ! | CTTACATATCGAATAAAGAT+AGG | - | chr4.1:1318577-1318596 | MS.gene015620:CDS | 25.0% |
| ! | TATGACTGATAACCTTAATT+CGG | - | chr4.1:1318980-1318999 | MS.gene015620:intron | 25.0% |
| !! | ACAAACATGCTCTTATTTAA+TGG | - | chr4.1:1318783-1318802 | MS.gene015620:intron | 25.0% |
| !! | CATTGAATAAATTTTCCATG+TGG | - | chr4.1:1318374-1318393 | MS.gene015620:intron | 25.0% |
| !! | CTGATTCTGAATTAAGTTTT+TGG | - | chr4.1:1317847-1317866 | MS.gene015620:CDS | 25.0% |
| !!! | TCTGAATTAAGTTTTTGGTT+GGG | - | chr4.1:1317852-1317871 | MS.gene015620:CDS | 25.0% |
| !!! | TTCTGAATTAAGTTTTTGGT+TGG | - | chr4.1:1317851-1317870 | MS.gene015620:CDS | 25.0% |
| !!! | TTGATTTGTTTTAATCTGGT+TGG | - | chr4.1:1318293-1318312 | MS.gene015620:intron | 25.0% |
| !!! | TTTCTTTGGATTTTGATTCA+GGG | + | chr4.1:1318659-1318678 | None:intergenic | 25.0% |
| AACAAACAATGACAGTACAA+AGG | + | chr4.1:1318456-1318475 | None:intergenic | 30.0% | |
| AACGAAATCAGAATCAGAAT+AGG | + | chr4.1:1317512-1317531 | None:intergenic | 30.0% | |
| AAGCTCATTCTATTCATAGA+AGG | - | chr4.1:1318081-1318100 | MS.gene015620:intron | 30.0% | |
| CAAAGGAAAGGAATATAGAT+TGG | - | chr4.1:1317940-1317959 | MS.gene015620:CDS | 30.0% | |
| CAATCTATATTCCTTTCCTT+TGG | + | chr4.1:1317942-1317961 | None:intergenic | 30.0% | |
| CATAGTAAAGTCAATAGCTT+CGG | + | chr4.1:1318964-1318983 | None:intergenic | 30.0% | |
| CCAACTTTAGACTTATAGAT+CGG | + | chr4.1:1318627-1318646 | None:intergenic | 30.0% | |
| GAAATTTGCATGTGAAGATT+TGG | - | chr4.1:1317711-1317730 | MS.gene015620:intron | 30.0% | |
| GATAGACTTTAATGATCTGA+TGG | - | chr4.1:1318317-1318336 | MS.gene015620:intron | 30.0% | |
| GATTTACAGATATTCCTATC+AGG | - | chr4.1:1318109-1318128 | MS.gene015620:intron | 30.0% | |
| TAAGAAACGAAAACAAAGAC+AGG | + | chr4.1:1319098-1319117 | None:intergenic | 30.0% | |
| TAAGAATCCATGGAAAAAAC+AGG | + | chr4.1:1317471-1317490 | None:intergenic | 30.0% | |
| TCAATAGGTTCAACCATTAA+TGG | + | chr4.1:1318349-1318368 | None:intergenic | 30.0% | |
| TTATCAGCTAGATTTAAGTC+AGG | - | chr4.1:1318684-1318703 | MS.gene015620:intron | 30.0% | |
| ! | GAATATCTGAGATTAGGTTT+AGG | - | chr4.1:1317755-1317774 | MS.gene015620:intron | 30.0% |
| !! | GGTTCTTGAATTGATTTTGT+GGG | - | chr4.1:1317873-1317892 | MS.gene015620:CDS | 30.0% |
| !!! | CTTTCTTTGGATTTTGATTC+AGG | + | chr4.1:1318660-1318679 | None:intergenic | 30.0% |
| !!! | TCAATTTCCTGTTTTTTCCA+TGG | - | chr4.1:1317461-1317480 | MS.gene015620:CDS | 30.0% |
| !!! | TGAATAATGATGGATTTTGC+AGG | - | chr4.1:1317899-1317918 | MS.gene015620:CDS | 30.0% |
| ACTTTAGACTTATAGATCGG+AGG | + | chr4.1:1318624-1318643 | None:intergenic | 35.0% | |
| CGTACAATTGTTCCATGATT+TGG | - | chr4.1:1318550-1318569 | MS.gene015620:CDS | 35.0% | |
| CTTTGACTGCTCAAATATTC+AGG | - | chr4.1:1318163-1318182 | MS.gene015620:intron | 35.0% | |
| GCTTCAGAAATAGATGATTC+CGG | + | chr4.1:1319008-1319027 | None:intergenic | 35.0% | |
| GTCCAAATCATCACTCAAAA+AGG | - | chr4.1:1318886-1318905 | MS.gene015620:intron | 35.0% | |
| TATGTAAGTCTGCCAAATCA+TGG | + | chr4.1:1318565-1318584 | None:intergenic | 35.0% | |
| TGATAACCTTAATTCGGAAC+CGG | - | chr4.1:1318986-1319005 | MS.gene015620:intron | 35.0% | |
| ! | AAGTCAATAGCTTCGGTTTT+CGG | + | chr4.1:1318957-1318976 | None:intergenic | 35.0% |
| ! | AGCTGATAAGTTGCTTTCTT+TGG | + | chr4.1:1318673-1318692 | None:intergenic | 35.0% |
| ! | ATCATGTGCTGTTGTTAGAT+AGG | - | chr4.1:1318846-1318865 | MS.gene015620:intron | 35.0% |
| ! | ATTGTGCTGTTAGATTCTGT+AGG | - | chr4.1:1318048-1318067 | MS.gene015620:intron | 35.0% |
| ! | CCGATCTATAAGTCTAAAGT+TGG | - | chr4.1:1318624-1318643 | MS.gene015620:intron | 35.0% |
| ! | CTGATGGACATTACCATTAA+TGG | - | chr4.1:1318333-1318352 | MS.gene015620:intron | 35.0% |
| ! | TCATGTGCTGTTGTTAGATA+GGG | - | chr4.1:1318847-1318866 | MS.gene015620:intron | 35.0% |
| !! | GGGTTCTTGAATTGATTTTG+TGG | - | chr4.1:1317872-1317891 | MS.gene015620:CDS | 35.0% |
| !! | TTGTGGGTACTGAATAATGA+TGG | - | chr4.1:1317889-1317908 | MS.gene015620:CDS | 35.0% |
| !!! | ATAATGATGGATTTTGCAGG+TGG | - | chr4.1:1317902-1317921 | MS.gene015620:CDS | 35.0% |
| !!! | CTCCTTTTTGAGTGATGATT+TGG | + | chr4.1:1318891-1318910 | None:intergenic | 35.0% |
| !!! | TAATGATGGATTTTGCAGGT+GGG | - | chr4.1:1317903-1317922 | MS.gene015620:CDS | 35.0% |
| AGGATCAATCACCAAAGGAA+AGG | - | chr4.1:1317928-1317947 | MS.gene015620:CDS | 40.0% | |
| ATGATTCCGGTTCCGAATTA+AGG | + | chr4.1:1318995-1319014 | None:intergenic | 40.0% | |
| CTGGTGCTCAATTATATGCA+AGG | - | chr4.1:1318758-1318777 | MS.gene015620:intron | 40.0% | |
| GCAGTACATGTGAAGAATGT+GGG | - | chr4.1:1318709-1318728 | MS.gene015620:intron | 40.0% | |
| GCTCTTATGAATAGTAGCTC+TGG | - | chr4.1:1317969-1317988 | MS.gene015620:intron | 40.0% | |
| TCAGCTAGATTTAAGTCAGG+AGG | - | chr4.1:1318687-1318706 | MS.gene015620:intron | 40.0% | |
| ! | CATGTGCTGTTGTTAGATAG+GGG | - | chr4.1:1318848-1318867 | MS.gene015620:intron | 40.0% |
| ! | GTTGACTCTTTCAACCAAAG+TGG | - | chr4.1:1318915-1318934 | MS.gene015620:intron | 40.0% |
| ! | TGATGATGCATCTACCACTT+TGG | + | chr4.1:1318932-1318951 | None:intergenic | 40.0% |
| ! | TTGAGTGATGATTTGGACCT+TGG | + | chr4.1:1318884-1318903 | None:intergenic | 40.0% |
| !!! | AATGATGGATTTTGCAGGTG+GGG | - | chr4.1:1317904-1317923 | MS.gene015620:CDS | 40.0% |
| AAAACAAAGACAGGCCTCTG+AGG | + | chr4.1:1319089-1319108 | None:intergenic | 45.0% | |
| GGATTGTGCATCTCAAACCT+CGG | - | chr4.1:1318598-1318617 | MS.gene015620:CDS | 45.0% | |
| GGCAGTACATGTGAAGAATG+TGG | - | chr4.1:1318708-1318727 | MS.gene015620:intron | 45.0% | |
| TACAAGATGAGCATAGTCGC+TGG | - | chr4.1:1318739-1318758 | MS.gene015620:intron | 45.0% | |
| ! | ATGGCGGAAAACATCCTGAT+AGG | + | chr4.1:1318126-1318145 | None:intergenic | 45.0% |
| ! | TCTGAGGAGTGGTTTTTCTC+GGG | + | chr4.1:1319073-1319092 | None:intergenic | 45.0% |
| !! | ATTTCTGAAGCTGAGCCATG+TGG | - | chr4.1:1319017-1319036 | MS.gene015620:intron | 45.0% |
| !! | CTCTGAGGAGTGGTTTTTCT+CGG | + | chr4.1:1319074-1319093 | None:intergenic | 45.0% |
| !! | TGATTTGGACCTTGGCTTTG+AGG | + | chr4.1:1318876-1318895 | None:intergenic | 45.0% |
| !! | TTTCTGAAGCTGAGCCATGT+GGG | - | chr4.1:1319018-1319037 | MS.gene015620:intron | 45.0% |
| AGTGCTTCTGCAGCTCAGAA+TGG | + | chr4.1:1318145-1318164 | None:intergenic | 50.0% | |
| CGAGAAAAACCACTCCTCAG+AGG | - | chr4.1:1319072-1319091 | MS.gene015620:intron | 50.0% | |
| GGGGAAGGATCAATCACCAA+AGG | - | chr4.1:1317923-1317942 | MS.gene015620:CDS | 50.0% | |
| ! | ATGGATTTTGCAGGTGGGGA+AGG | - | chr4.1:1317908-1317927 | MS.gene015620:CDS | 50.0% |
| ACAACTTCAACCCGCCCACA+TGG | + | chr4.1:1319035-1319054 | None:intergenic | 55.0% | |
| ATAGGGGAGCCTCAAAGCCA+AGG | - | chr4.1:1318864-1318883 | MS.gene015620:intron | 55.0% | |
| GACTTATAGATCGGAGGCCG+AGG | + | chr4.1:1318618-1318637 | None:intergenic | 55.0% | |
| GCTTCTGCAGCTCAGAATGG+CGG | + | chr4.1:1318142-1318161 | None:intergenic | 55.0% | |
| ! | AAAGACAGGCCTCTGAGGAG+TGG | + | chr4.1:1319084-1319103 | None:intergenic | 55.0% |
| CTGAAGCTGAGCCATGTGGG+CGG | - | chr4.1:1319021-1319040 | MS.gene015620:intron | 60.0% | |
| TGAAGCTGAGCCATGTGGGC+GGG | - | chr4.1:1319022-1319041 | MS.gene015620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1317444 | 1319118 | 1317444 | ID=MS.gene015620 |
| chr4.1 | mRNA | 1317444 | 1319118 | 1317444 | ID=MS.gene015620.t1;Parent=MS.gene015620 |
| chr4.1 | exon | 1319116 | 1319118 | 1319116 | ID=MS.gene015620.t1.exon1;Parent=MS.gene015620.t1 |
| chr4.1 | CDS | 1319116 | 1319118 | 1319116 | ID=cds.MS.gene015620.t1;Parent=MS.gene015620.t1 |
| chr4.1 | exon | 1318378 | 1318641 | 1318378 | ID=MS.gene015620.t1.exon2;Parent=MS.gene015620.t1 |
| chr4.1 | CDS | 1318378 | 1318641 | 1318378 | ID=cds.MS.gene015620.t1;Parent=MS.gene015620.t1 |
| chr4.1 | exon | 1317783 | 1317986 | 1317783 | ID=MS.gene015620.t1.exon3;Parent=MS.gene015620.t1 |
| chr4.1 | CDS | 1317783 | 1317986 | 1317783 | ID=cds.MS.gene015620.t1;Parent=MS.gene015620.t1 |
| chr4.1 | exon | 1317444 | 1317698 | 1317444 | ID=MS.gene015620.t1.exon4;Parent=MS.gene015620.t1 |
| chr4.1 | CDS | 1317444 | 1317698 | 1317444 | ID=cds.MS.gene015620.t1;Parent=MS.gene015620.t1 |
| Gene Sequence |
| Protein sequence |
