AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015638

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015638.t1 MTR_8g105780 97.574 371 5 1 1 367 1 371 0.0 744
MS.gene015638.t1 MTR_5g029680 46.125 271 128 6 18 272 32 300 4.54e-67 220
MS.gene015638.t1 MTR_4g077970 43.284 268 144 3 18 278 12 278 1.11e-66 219
MS.gene015638.t1 MTR_1g102860 50.000 198 89 4 18 215 40 227 6.86e-56 186
MS.gene015638.t1 MTR_7g095680 48.454 194 96 2 18 211 49 238 1.57e-53 181
MS.gene015638.t1 MTR_8g087540 45.771 201 98 3 9 207 3 194 3.57e-50 173
MS.gene015638.t1 MTR_3g104550 45.876 194 98 2 18 211 46 232 5.73e-50 172
MS.gene015638.t1 MTR_6g043060 46.860 207 95 7 4 210 10 201 1.76e-48 167
MS.gene015638.t1 MTR_1g061170 41.739 230 124 4 16 244 47 267 5.79e-48 169
MS.gene015638.t1 MTR_1g071360 45.699 186 83 3 18 203 32 199 5.51e-47 163
MS.gene015638.t1 MTR_1g071360 45.699 186 83 3 18 203 29 196 9.58e-47 163
MS.gene015638.t1 MTR_6g086805 46.193 197 95 4 16 212 9 194 2.41e-45 159
MS.gene015638.t1 MTR_2g100680 44.554 202 99 5 7 206 18 208 7.73e-45 160
MS.gene015638.t1 MTR_2g017890 45.226 199 95 4 9 201 4 194 9.90e-45 158
MS.gene015638.t1 MTR_8g083100 47.917 192 87 6 19 210 23 201 1.13e-44 160
MS.gene015638.t1 MTR_2g100670 44.500 200 98 5 4 203 21 207 2.34e-44 155
MS.gene015638.t1 MTR_2g100670 44.500 200 98 5 4 203 129 315 2.23e-43 155
MS.gene015638.t1 MTR_5g017470 42.373 177 74 2 17 166 8 183 1.19e-33 126
MS.gene015638.t1 MTR_5g089170 60.417 96 37 1 17 112 24 118 3.03e-33 124
MS.gene015638.t1 MTR_3g101870 62.766 94 34 1 17 110 23 115 3.50e-33 127
MS.gene015638.t1 MTR_5g010680 59.574 94 37 1 17 110 23 115 5.04e-33 126
MS.gene015638.t1 MTR_0020s0020 60.638 94 36 1 17 110 32 124 5.33e-32 123
MS.gene015638.t1 MTR_7g091370 51.961 102 48 1 9 110 13 113 1.13e-30 117
MS.gene015638.t1 MTR_1g100777 57.447 94 39 1 17 110 17 109 2.33e-30 118
MS.gene015638.t1 MTR_4g088900 40.645 155 82 5 17 162 32 185 1.90e-26 105
MS.gene015638.t1 MTR_5g047190 53.684 95 36 3 26 113 1 94 1.54e-21 88.6
MS.gene015638.t1 MTR_1g061170 35.928 167 98 3 79 244 14 172 5.44e-21 93.2
MS.gene015638.t1 MTR_4g045757 57.377 61 25 1 16 76 12 71 5.06e-14 67.0
MS.gene015638.t1 MTR_6g044340 32.857 140 82 4 71 210 14 141 1.21e-11 64.7
MS.gene015638.t1 MTR_2g043940 29.677 155 86 2 71 215 14 155 2.67e-11 64.7
MS.gene015638.t1 MTR_4g077970 30.000 130 84 2 156 278 2 131 5.51e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015638.t1 AT1G67970 43.978 357 159 6 16 356 17 348 5.26e-90 275
MS.gene015638.t1 AT1G32330 46.400 250 122 4 13 251 32 280 4.13e-63 209
MS.gene015638.t1 AT1G32330 46.400 250 122 4 13 251 32 280 4.47e-63 209
MS.gene015638.t1 AT5G16820 46.281 242 120 4 15 248 24 263 6.21e-60 201
MS.gene015638.t1 AT5G16820 46.281 242 120 4 15 248 24 263 6.21e-60 201
MS.gene015638.t1 AT4G17750 46.748 246 111 5 18 244 52 296 2.98e-59 199
MS.gene015638.t1 AT3G22830 42.045 264 149 3 18 278 61 323 5.31e-56 188
MS.gene015638.t1 AT2G26150 49.206 189 89 2 18 206 44 225 9.62e-56 186
MS.gene015638.t1 AT2G26150 49.206 189 89 2 18 206 44 225 9.62e-56 186
MS.gene015638.t1 AT3G02990 45.652 230 95 4 4 219 9 222 1.82e-55 189
MS.gene015638.t1 AT3G51910 43.814 194 87 4 18 211 29 200 9.03e-50 168
MS.gene015638.t1 AT5G03720 43.455 191 99 3 16 206 53 234 3.22e-47 166
MS.gene015638.t1 AT5G03720 43.455 191 99 3 16 206 53 234 3.22e-47 166
MS.gene015638.t1 AT5G43840 44.211 190 85 2 17 206 18 186 2.04e-46 160
MS.gene015638.t1 AT3G24520 43.939 198 81 3 16 213 15 182 3.51e-46 160
MS.gene015638.t1 AT4G13980 45.000 200 99 4 4 203 9 197 2.98e-44 159
MS.gene015638.t1 AT5G45710 41.981 212 108 3 11 218 6 206 3.38e-44 156
MS.gene015638.t1 AT5G45710 41.981 212 108 3 11 218 6 206 3.38e-44 156
MS.gene015638.t1 AT3G63350 40.284 211 111 4 17 227 27 222 7.60e-43 150
MS.gene015638.t1 AT5G54070 40.404 198 102 2 14 211 67 248 1.61e-42 151
MS.gene015638.t1 AT4G18880 45.685 197 97 4 12 206 9 197 1.56e-39 145
MS.gene015638.t1 AT1G46264 55.263 114 50 1 9 122 25 137 6.06e-36 134
MS.gene015638.t1 AT4G11660 59.574 94 37 1 17 110 58 150 5.89e-32 124
MS.gene015638.t1 AT5G62020 53.636 110 49 2 2 110 6 114 2.85e-31 120
MS.gene015638.t1 AT4G36990 57.447 94 39 1 17 110 13 105 3.33e-31 120
MS.gene015638.t1 AT2G41690 53.211 109 44 2 11 113 27 134 5.35e-31 118
MS.gene015638.t1 AT2G26150 42.308 130 69 1 77 206 47 170 4.13e-23 98.2
MS.gene015638.t1 AT2G26150 42.308 130 69 1 77 206 47 170 4.13e-23 98.2
MS.gene015638.t1 AT4G18870 49.000 100 49 2 7 106 2 99 6.06e-21 92.0
MS.gene015638.t1 AT4G18870 42.276 123 61 3 15 135 143 257 3.68e-20 89.7
MS.gene015638.t1 AT4G19630 36.842 95 56 2 15 106 8 101 1.24e-12 65.1
MS.gene015638.t1 AT1G77570 40.659 91 50 3 19 106 27 116 1.03e-11 62.8

Find 80 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGTGTTTGAAATAAT+TGG 0.094053 4.1:+1468546 None:intergenic
GTTGAATTTATCAGGGTTTC+AGG 0.157083 4.1:-1467703 MS.gene015638:intron
AGGTTCTGGTTGCTTATTAA+AGG 0.234573 4.1:+1467148 None:intergenic
TTGCAAATGAAAACTTCATT+AGG 0.259058 4.1:-1467655 MS.gene015638:CDS
GGTTCATCGCGATTGTCTTT+TGG 0.270022 4.1:+1467554 None:intergenic
TGCAAATGAAAACTTCATTA+GGG 0.270385 4.1:-1467654 MS.gene015638:CDS
CTTAAATAAATGTTACGATA+TGG 0.270826 4.1:-1468668 MS.gene015638:CDS
CGTGCAATGCCCTGGATTCT+TGG 0.305963 4.1:-1467336 MS.gene015638:CDS
TTATTGTGTTTGAAATAATT+GGG 0.306935 4.1:+1468547 None:intergenic
GCAGCAGATGCTCTCATTCT+TGG 0.308364 4.1:-1467366 MS.gene015638:CDS
TTCACCCTAAGGAAAATAAT+TGG 0.343688 4.1:-1467304 MS.gene015638:CDS
GTTTCTTGTACCTGATTTAC+CGG 0.350562 4.1:-1467027 MS.gene015638:CDS
GATCGTGGAACAACAGGTTT+TGG 0.358883 4.1:+1467176 None:intergenic
AACGGAGAATGATTATCTAA+TGG 0.359885 4.1:+1467047 None:intergenic
GCGAGCGAGAAGGGTGGTTC+TGG 0.371236 4.1:-1468706 MS.gene015638:CDS
TGAAGCGATGATTATGGAAA+TGG 0.375364 4.1:-1466859 MS.gene015638:CDS
CAACCGATTCCATCATCTCT+TGG 0.401097 4.1:-1468633 MS.gene015638:CDS
CTACTGAGTGATCGCCTTGA+AGG 0.403981 4.1:-1467404 MS.gene015638:CDS
GATGCTTCTCCATTCCTTCA+AGG 0.410224 4.1:+1467390 None:intergenic
TGATTTACTGCTTCTTGTGA+TGG 0.416635 4.1:+1467533 None:intergenic
GGAAAATTGATGCAGATCAC+TGG 0.420160 4.1:-1467682 MS.gene015638:CDS
TGCTGAAGAATATACGTAGA+AGG 0.420862 4.1:-1467619 MS.gene015638:CDS
GTCTGTCATCTTGGTTACCT+TGG 0.422781 4.1:+1467252 None:intergenic
GAACCGTCATCCGGTAAATC+AGG 0.426775 4.1:+1467017 None:intergenic
ACGGAGAATGATTATCTAAT+GGG 0.429612 4.1:+1467048 None:intergenic
GCAGGAGATCGTGGAACAAC+AGG 0.434299 4.1:+1467170 None:intergenic
TCTGTAGAAACCTCAGGTTC+TGG 0.439677 4.1:+1467134 None:intergenic
AAGCAGTAAATCATGGCCTT+TGG 0.439818 4.1:-1467523 MS.gene015638:CDS
ATCATCCCATCAGAAGAAAC+TGG 0.445617 4.1:+1467230 None:intergenic
AAGAAACTGGTCTGTCATCT+TGG 0.448044 4.1:+1467243 None:intergenic
TCGTAACATTTATTTAAGAA+AGG 0.448776 4.1:+1468673 None:intergenic
AGAAGTTGAGAATCTAAAAT+CGG 0.450572 4.1:-1467498 MS.gene015638:CDS
GAACCTGAGGTTTCTACAGA+TGG 0.463364 4.1:-1467131 MS.gene015638:CDS
AATTGGCGTTTCTCTGAAGC+AGG 0.464691 4.1:-1467287 MS.gene015638:CDS
CGAGAAGGGTGGTTCTGGTT+CGG 0.469624 4.1:-1468701 MS.gene015638:CDS
GCAGCAACAGCGAGCGAGAA+GGG 0.473861 4.1:-1468715 MS.gene015638:CDS
AACCCATCTGTAGAAACCTC+AGG 0.474952 4.1:+1467128 None:intergenic
TGTTCCCACGAACCGTCATC+CGG 0.475845 4.1:+1467008 None:intergenic
GGTTCAGCTGCTTCACCCTA+AGG 0.476383 4.1:-1467315 MS.gene015638:CDS
GCTTACTCTCAGAAGATTCA+AGG 0.482301 4.1:+1467432 None:intergenic
AGCAGCTGAACCAAGAATCC+AGG 0.483387 4.1:+1467326 None:intergenic
ATTTACCGGATGACGGTTCG+TGG 0.488372 4.1:-1467013 MS.gene015638:CDS
GAGTGATCGCCTTGAAGGAA+TGG 0.496645 4.1:-1467399 MS.gene015638:CDS
TCTGGTTGCTTATTAAAGGC+AGG 0.497515 4.1:+1467152 None:intergenic
GTCATGGTCGTGCAATGCCC+TGG 0.501216 4.1:-1467344 MS.gene015638:CDS
GACAGACCAGTTTCTTCTGA+TGG 0.504911 4.1:-1467236 MS.gene015638:CDS
TCTCTGAAGCAGGGAATATG+TGG 0.508698 4.1:-1467277 MS.gene015638:CDS
GATTCTCAACTTCTCTCCAA+AGG 0.510423 4.1:+1467507 None:intergenic
TATTGTGTTTGAAATAATTG+GGG 0.510469 4.1:+1468548 None:intergenic
GATGCTCTCATTCTTGGTCA+TGG 0.526629 4.1:-1467360 MS.gene015638:CDS
GTTGAGTTGTCTGACGAAGC+TGG 0.529603 4.1:+1468519 None:intergenic
GAGATGATGGAATCGGTTGA+AGG 0.531686 4.1:+1468637 None:intergenic
ATCATCTCTTGGTCCGCTGA+TGG 0.533246 4.1:-1468622 MS.gene015638:CDS
ATCAGCGGACCAAGAGATGA+TGG 0.535757 4.1:+1468624 None:intergenic
GGTAAATCAGGTACAAGAAA+CGG 0.535891 4.1:+1467029 None:intergenic
GAGTGAGAATTGATCAGCGT+TGG 0.547894 4.1:+1468579 None:intergenic
GTACCTGATTTACCGGATGA+CGG 0.554758 4.1:-1467020 MS.gene015638:CDS
AACTGTTAGTGACATGGAGA+TGG 0.556871 4.1:-1466922 MS.gene015638:CDS
ACAGACCAGTTTCTTCTGAT+GGG 0.557728 4.1:-1467235 MS.gene015638:CDS
GTTTGACCAACTCCTGCGTG+AGG 0.558206 4.1:+1467465 None:intergenic
GGACCAAGAGATGATGGAAT+CGG 0.561010 4.1:+1468630 None:intergenic
TTTACCGGATGACGGTTCGT+GGG 0.565563 4.1:-1467012 MS.gene015638:CDS
AGCAGCAACAGCGAGCGAGA+AGG 0.566061 4.1:-1468716 MS.gene015638:CDS
TCACAAGAAGCAGTAAATCA+TGG 0.568437 4.1:-1467530 MS.gene015638:CDS
TGCTGATCTGCAGCAACATG+TGG 0.573167 4.1:+1467590 None:intergenic
AACCTGAGGTTTCTACAGAT+GGG 0.578276 4.1:-1467130 MS.gene015638:CDS
TTTGACCAACTCCTGCGTGA+GGG 0.583918 4.1:+1467466 None:intergenic
GAAAATTGATGCAGATCACT+GGG 0.584009 4.1:-1467681 MS.gene015638:CDS
GCAAATGAAAACTTCATTAG+GGG 0.585563 4.1:-1467653 MS.gene015638:CDS
GAAGGGTGGTTCTGGTTCGG+TGG 0.586874 4.1:-1468698 MS.gene015638:CDS
TAATAAGCAACCAGAACCTG+AGG 0.601561 4.1:-1467144 MS.gene015638:CDS
GCAGCTGAACCAAGAATCCA+GGG 0.614903 4.1:+1467327 None:intergenic
TTATTAAAGGCAGGAGATCG+TGG 0.635093 4.1:+1467161 None:intergenic
CTCTGAAGCAGGGAATATGT+GGG 0.641241 4.1:-1467276 MS.gene015638:CDS
ATTGGCGTTTCTCTGAAGCA+GGG 0.648668 4.1:-1467286 MS.gene015638:CDS
GGAGCAAACTGTTAGTGACA+TGG 0.649582 4.1:-1466928 MS.gene015638:CDS
GCAGGGAATATGTGGGACCA+AGG 0.652641 4.1:-1467269 MS.gene015638:CDS
GCAACAGCGAGCGAGAAGGG+TGG 0.652707 4.1:-1468712 MS.gene015638:CDS
GAAACTATTGTTACCATCAG+CGG 0.656676 4.1:+1468609 None:intergenic
AGATACTGATCGTGAAAACG+AGG 0.683103 4.1:-1466949 MS.gene015638:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATGAATTAATAATTGA+AGG + chr4.1:1467099-1467118 None:intergenic 15.0%
!! CATATGAATTAATAATTGAA+GGG + chr4.1:1467098-1467117 None:intergenic 15.0%
!! TAGATAAACAAAATTATTGT+AGG + chr4.1:1467777-1467796 None:intergenic 15.0%
!! TATTTAAACAAACTGATATA+GGG + chr4.1:1467167-1467186 None:intergenic 15.0%
!!! ATTATATTATTAATGGGTAA+AGG - chr4.1:1467196-1467215 MS.gene015638:CDS 15.0%
!!! ATTATTGTGTTTGAAATAAT+TGG + chr4.1:1467023-1467042 None:intergenic 15.0%
!!! TACAATAATTTTGTTTATCT+AGG - chr4.1:1467776-1467795 MS.gene015638:intron 15.0%
!!! TTATTGTGTTTGAAATAATT+GGG + chr4.1:1467022-1467041 None:intergenic 15.0%
!! CTTAAATAAATGTTACGATA+TGG - chr4.1:1466898-1466917 MS.gene015638:CDS 20.0%
!! GTATTTAAACAAACTGATAT+AGG + chr4.1:1467168-1467187 None:intergenic 20.0%
!! TAGTACTACTATATAAATCA+AGG + chr4.1:1467233-1467252 None:intergenic 20.0%
!! TCGTAACATTTATTTAAGAA+AGG + chr4.1:1466896-1466915 None:intergenic 20.0%
!! TTTATATAGTAGTACTATGT+AGG - chr4.1:1467236-1467255 MS.gene015638:CDS 20.0%
!!! ATAAAATAGTCAAAGTGTTT+TGG + chr4.1:1467555-1467574 None:intergenic 20.0%
!!! TATTGTGTTTGAAATAATTG+GGG + chr4.1:1467021-1467040 None:intergenic 20.0%
! AAAATCCATTAGTAGTACTT+AGG - chr4.1:1467262-1467281 MS.gene015638:CDS 25.0%
! AAATCCATTAGTAGTACTTA+GGG - chr4.1:1467263-1467282 MS.gene015638:CDS 25.0%
! TATGGATAAACAAGTTAATC+AGG + chr4.1:1467640-1467659 None:intergenic 25.0%
! TGCAAATGAAAACTTCATTA+GGG - chr4.1:1467912-1467931 MS.gene015638:intron 25.0%
! TTGCAAATGAAAACTTCATT+AGG - chr4.1:1467911-1467930 MS.gene015638:intron 25.0%
!! AGAAGTTGAGAATCTAAAAT+CGG - chr4.1:1468068-1468087 MS.gene015638:intron 25.0%
!!! CAGTATCTTCAACATTTTTT+AGG + chr4.1:1468605-1468624 None:intergenic 25.0%
!!! TCTTCAACATTTTTTAGGAT+AGG + chr4.1:1468600-1468619 None:intergenic 25.0%
AAACTGATATAGGGTTAATG+AGG + chr4.1:1467158-1467177 None:intergenic 30.0%
AACGGAGAATGATTATCTAA+TGG + chr4.1:1468522-1468541 None:intergenic 30.0%
AATCCATTAGTAGTACTTAG+GGG - chr4.1:1467264-1467283 MS.gene015638:CDS 30.0%
ACACTTTAAACAAATCGAGA+CGG + chr4.1:1467814-1467833 None:intergenic 30.0%
ACGGAGAATGATTATCTAAT+GGG + chr4.1:1468521-1468540 None:intergenic 30.0%
GATGACTGTTGAATTTATCA+GGG - chr4.1:1467856-1467875 MS.gene015638:intron 30.0%
GCAAATGAAAACTTCATTAG+GGG - chr4.1:1467913-1467932 MS.gene015638:intron 30.0%
TGATGACTGTTGAATTTATC+AGG - chr4.1:1467855-1467874 MS.gene015638:intron 30.0%
TGTAGTAAAGGTTTCTCAAA+AGG + chr4.1:1467720-1467739 None:intergenic 30.0%
TTCACCCTAAGGAAAATAAT+TGG - chr4.1:1468262-1468281 MS.gene015638:intron 30.0%
! AAACGCCAATTATTTTCCTT+AGG + chr4.1:1468270-1468289 None:intergenic 30.0%
! AACGCCAATTATTTTCCTTA+GGG + chr4.1:1468269-1468288 None:intergenic 30.0%
!!! TGATTTTGAAGCGATGATTA+TGG - chr4.1:1468701-1468720 MS.gene015638:CDS 30.0%
!!! TTACTTCTACGACACTTTTT+TGG - chr4.1:1467294-1467313 MS.gene015638:CDS 30.0%
AACAGTGGTCTGTTCAAATT+CGG + chr4.1:1467380-1467399 None:intergenic 35.0%
GAAAATTGATGCAGATCACT+GGG - chr4.1:1467885-1467904 MS.gene015638:intron 35.0%
GAAACTATTGTTACCATCAG+CGG + chr4.1:1466960-1466979 None:intergenic 35.0%
GGTAAATCAGGTACAAGAAA+CGG + chr4.1:1468540-1468559 None:intergenic 35.0%
GTTGAATTTATCAGGGTTTC+AGG - chr4.1:1467863-1467882 MS.gene015638:intron 35.0%
GTTTCTTGTACCTGATTTAC+CGG - chr4.1:1468539-1468558 MS.gene015638:CDS 35.0%
TCACAAGAAGCAGTAAATCA+TGG - chr4.1:1468036-1468055 MS.gene015638:intron 35.0%
TGAAGCGATGATTATGGAAA+TGG - chr4.1:1468707-1468726 MS.gene015638:CDS 35.0%
TGATATAGGGTTAATGAGGT+CGG + chr4.1:1467154-1467173 None:intergenic 35.0%
TGATTTACTGCTTCTTGTGA+TGG + chr4.1:1468036-1468055 None:intergenic 35.0%
TGCTGAAGAATATACGTAGA+AGG - chr4.1:1467947-1467966 MS.gene015638:intron 35.0%
TTTCAATTCAGCAGCATCAA+AGG + chr4.1:1467675-1467694 None:intergenic 35.0%
! AGGTTCTGGTTGCTTATTAA+AGG + chr4.1:1468421-1468440 None:intergenic 35.0%
!! ACTATTTCTAGAAGCTATCC+TGG + chr4.1:1467520-1467539 None:intergenic 35.0%
!! TCGTGGGAACAACTATTTTT+AGG - chr4.1:1468570-1468589 MS.gene015638:CDS 35.0%
AACCTGAGGTTTCTACAGAT+GGG - chr4.1:1468436-1468455 MS.gene015638:intron 40.0%
AACTGTTAGTGACATGGAGA+TGG - chr4.1:1468644-1468663 MS.gene015638:CDS 40.0%
AAGCAGTAAATCATGGCCTT+TGG - chr4.1:1468043-1468062 MS.gene015638:intron 40.0%
AATCGAGACGGTAAAAATGC+AGG + chr4.1:1467802-1467821 None:intergenic 40.0%
ACAGACCAGTTTCTTCTGAT+GGG - chr4.1:1468331-1468350 MS.gene015638:intron 40.0%
AGATACTGATCGTGAAAACG+AGG - chr4.1:1468617-1468636 MS.gene015638:CDS 40.0%
ATCATCCCATCAGAAGAAAC+TGG + chr4.1:1468339-1468358 None:intergenic 40.0%
CAAAGGATTACGGTTCTCTA+TGG + chr4.1:1467658-1467677 None:intergenic 40.0%
CAACCCCTAAGTACTACTAA+TGG + chr4.1:1467270-1467289 None:intergenic 40.0%
CTTACAGTCATTGACAATCG+CGG + chr4.1:1467474-1467493 None:intergenic 40.0%
GATTCTCAACTTCTCTCCAA+AGG + chr4.1:1468062-1468081 None:intergenic 40.0%
GCTTACTCTCAGAAGATTCA+AGG + chr4.1:1468137-1468156 None:intergenic 40.0%
GGAAAATTGATGCAGATCAC+TGG - chr4.1:1467884-1467903 MS.gene015638:intron 40.0%
GGTTAATGAGGTCGGTAATT+GGG + chr4.1:1467146-1467165 None:intergenic 40.0%
GTTAATGAGGTCGGTAATTG+GGG + chr4.1:1467145-1467164 None:intergenic 40.0%
GTTGCATGTTGCTGTAGTAA+AGG + chr4.1:1467732-1467751 None:intergenic 40.0%
TAATAAGCAACCAGAACCTG+AGG - chr4.1:1468422-1468441 MS.gene015638:intron 40.0%
TCAGCAGCATCAAAGGATTA+CGG + chr4.1:1467668-1467687 None:intergenic 40.0%
TCATTGACAATCGCGGAAAA+TGG + chr4.1:1467467-1467486 None:intergenic 40.0%
TCTAGAAGCTATCCTGGTTA+CGG + chr4.1:1467514-1467533 None:intergenic 40.0%
TCTGGTTGCTTATTAAAGGC+AGG + chr4.1:1468417-1468436 None:intergenic 40.0%
TGTAGGTTCTTCTACTGAGT+GGG + chr4.1:1467760-1467779 None:intergenic 40.0%
TTAATGAGGTCGGTAATTGG+GGG + chr4.1:1467144-1467163 None:intergenic 40.0%
TTATTAAAGGCAGGAGATCG+TGG + chr4.1:1468408-1468427 None:intergenic 40.0%
TTGTAGGTTCTTCTACTGAG+TGG + chr4.1:1467761-1467780 None:intergenic 40.0%
! AAGAAACTGGTCTGTCATCT+TGG + chr4.1:1468326-1468345 None:intergenic 40.0%
!!! GGTTTTGGTTTTTCAGCAAC+AGG + chr4.1:1468378-1468397 None:intergenic 40.0%
!!! TTTGGTTTTTCAGCAACAGG+TGG + chr4.1:1468375-1468394 None:intergenic 40.0%
AACCCATCTGTAGAAACCTC+AGG + chr4.1:1468441-1468460 None:intergenic 45.0%
AGTGTATCGCAGAACAACAG+TGG + chr4.1:1467395-1467414 None:intergenic 45.0%
GAACCTGAGGTTTCTACAGA+TGG - chr4.1:1468435-1468454 MS.gene015638:intron 45.0%
GACAGACCAGTTTCTTCTGA+TGG - chr4.1:1468330-1468349 MS.gene015638:intron 45.0%
GAGTGAGAATTGATCAGCGT+TGG + chr4.1:1466990-1467009 None:intergenic 45.0%
GATGCTCTCATTCTTGGTCA+TGG - chr4.1:1468206-1468225 MS.gene015638:intron 45.0%
GATGCTTCTCCATTCCTTCA+AGG + chr4.1:1468179-1468198 None:intergenic 45.0%
GGAGCAAACTGTTAGTGACA+TGG - chr4.1:1468638-1468657 MS.gene015638:CDS 45.0%
GGGTTAATGAGGTCGGTAAT+TGG + chr4.1:1467147-1467166 None:intergenic 45.0%
GTACCTGATTTACCGGATGA+CGG - chr4.1:1468546-1468565 MS.gene015638:CDS 45.0%
GTCTGTCATCTTGGTTACCT+TGG + chr4.1:1468317-1468336 None:intergenic 45.0%
TCTGTAGAAACCTCAGGTTC+TGG + chr4.1:1468435-1468454 None:intergenic 45.0%
TTCAGCTTACTTCCGTAACC+AGG - chr4.1:1467499-1467518 MS.gene015638:CDS 45.0%
TTGACAATCGCGGAAAATGG+CGG + chr4.1:1467464-1467483 None:intergenic 45.0%
! CAACCGATTCCATCATCTCT+TGG - chr4.1:1466933-1466952 MS.gene015638:CDS 45.0%
! GATCGTGGAACAACAGGTTT+TGG + chr4.1:1468393-1468412 None:intergenic 45.0%
! GGTTCATCGCGATTGTCTTT+TGG + chr4.1:1468015-1468034 None:intergenic 45.0%
! TCATCGCGATTGTCTTTTGG+CGG + chr4.1:1468012-1468031 None:intergenic 45.0%
!! AATTGGCGTTTCTCTGAAGC+AGG - chr4.1:1468279-1468298 MS.gene015638:intron 45.0%
!! ATTGGCGTTTCTCTGAAGCA+GGG - chr4.1:1468280-1468299 MS.gene015638:intron 45.0%
!! CTCTGAAGCAGGGAATATGT+GGG - chr4.1:1468290-1468309 MS.gene015638:intron 45.0%
!! GAGATGATGGAATCGGTTGA+AGG + chr4.1:1466932-1466951 None:intergenic 45.0%
!! GGACCAAGAGATGATGGAAT+CGG + chr4.1:1466939-1466958 None:intergenic 45.0%
!! TCTCTGAAGCAGGGAATATG+TGG - chr4.1:1468289-1468308 MS.gene015638:intron 45.0%
!! ATACTATATTATATTATTAA+TGG - chr4.1:1467189-1467208 MS.gene015638:CDS 5.0%
!! TACTATATTATATTATTAAT+GGG - chr4.1:1467190-1467209 MS.gene015638:CDS 5.0%
AAAAACCCTCACGCAGGAGT+TGG - chr4.1:1468095-1468114 MS.gene015638:intron 50.0%
AGCAGCTGAACCAAGAATCC+AGG + chr4.1:1468243-1468262 None:intergenic 50.0%
ATCAGCGGACCAAGAGATGA+TGG + chr4.1:1466945-1466964 None:intergenic 50.0%
ATCATCTCTTGGTCCGCTGA+TGG - chr4.1:1466944-1466963 MS.gene015638:CDS 50.0%
CTACTGAGTGATCGCCTTGA+AGG - chr4.1:1468162-1468181 MS.gene015638:intron 50.0%
GAACCGTCATCCGGTAAATC+AGG + chr4.1:1468552-1468571 None:intergenic 50.0%
GAGTGATCGCCTTGAAGGAA+TGG - chr4.1:1468167-1468186 MS.gene015638:intron 50.0%
GCAGCAGATGCTCTCATTCT+TGG - chr4.1:1468200-1468219 MS.gene015638:intron 50.0%
GCAGCTGAACCAAGAATCCA+GGG + chr4.1:1468242-1468261 None:intergenic 50.0%
GGATAGAAAAACCCTCACGC+AGG - chr4.1:1468089-1468108 MS.gene015638:intron 50.0%
TCGGCATAAGCTCTCCCAAA+CGG + chr4.1:1467361-1467380 None:intergenic 50.0%
TCTCCCAAACGGTCTCAGAA+GGG + chr4.1:1467350-1467369 None:intergenic 50.0%
TGCTGATCTGCAGCAACATG+TGG + chr4.1:1467979-1467998 None:intergenic 50.0%
TTTGACCAACTCCTGCGTGA+GGG + chr4.1:1468103-1468122 None:intergenic 50.0%
! ATTTACCGGATGACGGTTCG+TGG - chr4.1:1468553-1468572 MS.gene015638:CDS 50.0%
! CGATTGTCTTTTGGCGGCAA+TGG + chr4.1:1468006-1468025 None:intergenic 50.0%
! GTTGAGTTGTCTGACGAAGC+TGG + chr4.1:1467050-1467069 None:intergenic 50.0%
! TTTACCGGATGACGGTTCGT+GGG - chr4.1:1468554-1468573 MS.gene015638:CDS 50.0%
!! AAGCCCTTCTGAGACCGTTT+GGG - chr4.1:1467344-1467363 MS.gene015638:CDS 50.0%
!! TAAGCCCTTCTGAGACCGTT+TGG - chr4.1:1467343-1467362 MS.gene015638:CDS 50.0%
CGTGCAATGCCCTGGATTCT+TGG - chr4.1:1468230-1468249 MS.gene015638:intron 55.0%
CTCTCCCAAACGGTCTCAGA+AGG + chr4.1:1467351-1467370 None:intergenic 55.0%
GAGGTCGGTAATTGGGGGAA+AGG + chr4.1:1467139-1467158 None:intergenic 55.0%
GCAGGAGATCGTGGAACAAC+AGG + chr4.1:1468399-1468418 None:intergenic 55.0%
GCAGGGAATATGTGGGACCA+AGG - chr4.1:1468297-1468316 MS.gene015638:intron 55.0%
GGTTCAGCTGCTTCACCCTA+AGG - chr4.1:1468251-1468270 MS.gene015638:intron 55.0%
GTTTGACCAACTCCTGCGTG+AGG + chr4.1:1468104-1468123 None:intergenic 55.0%
TGTTCCCACGAACCGTCATC+CGG + chr4.1:1468561-1468580 None:intergenic 55.0%
!! CGAGAAGGGTGGTTCTGGTT+CGG - chr4.1:1466865-1466884 MS.gene015638:CDS 55.0%
AGCAGCAACAGCGAGCGAGA+AGG - chr4.1:1466850-1466869 MS.gene015638:CDS 60.0%
GCAGCAACAGCGAGCGAGAA+GGG - chr4.1:1466851-1466870 MS.gene015638:CDS 60.0%
GTCATGGTCGTGCAATGCCC+TGG - chr4.1:1468222-1468241 MS.gene015638:intron 60.0%
!! GAAGGGTGGTTCTGGTTCGG+TGG - chr4.1:1466868-1466887 MS.gene015638:CDS 60.0%
GCAACAGCGAGCGAGAAGGG+TGG - chr4.1:1466854-1466873 MS.gene015638:CDS 65.0%
GCGAGCGAGAAGGGTGGTTC+TGG - chr4.1:1466860-1466879 MS.gene015638:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 1466842 1468746 1466842 ID=MS.gene015638
chr4.1 mRNA 1466842 1468746 1466842 ID=MS.gene015638.t1;Parent=MS.gene015638
chr4.1 exon 1468513 1468746 1468513 ID=MS.gene015638.t1.exon1;Parent=MS.gene015638.t1
chr4.1 CDS 1468513 1468746 1468513 ID=cds.MS.gene015638.t1;Parent=MS.gene015638.t1
chr4.1 exon 1466842 1467711 1466842 ID=MS.gene015638.t1.exon2;Parent=MS.gene015638.t1
chr4.1 CDS 1466842 1467711 1466842 ID=cds.MS.gene015638.t1;Parent=MS.gene015638.t1
Gene Sequence

>MS.gene015638

ATGGTGAAAGCAGCAACAGCGAGCGAGAAGGGTGGTTCTGGTTCGGTGGCACCTTTCTTAAATAAATGTTACGATATGGTTGAAGATCCTTCAACCGATTCCATCATCTCTTGGTCCGCTGATGGTAACAATAGTTTCATCATCTCCAACGCTGATCAATTCTCACTCACTCTTCTCCCCAATTATTTCAAACACAATAATTTCTCCAGCTTCGTCAGACAACTCAACATCTATGTATGCTCTTCTTATTCATCCCTTCAATTATTAATTCATATGTTCATTAATTTCTCTGTTCCTTTCCCCCAATTACCGACCTCATTAACCCTATATCAGTTTGTTTAAATACTATACTATATTATATTATTAATGGGTAAAGGTATTCTATTTTCCTTGATTTATATAGTAGTACTATGTAGGTATAAAATCCATTAGTAGTACTTAGGGGTTGCATTTTACTTCTACGACACTTTTTTGGATTATTTGAGTTTATATGTTGACATATAAGCCCTTCTGAGACCGTTTGGGAGAGCTTATGCCGAATTTGAACAGACCACTGTTGTTCTGCGATACACTATTTAGTACATACTGCTGTCAAATAACAGCTATAGAACTTGAACAACCGCCATTTTCCGCGATTGTCAATGACTGTAAGCTGTTTTCAGCTTACTTCCGTAACCAGGATAGCTTCTAGAAATAGTTTATAGTTTATACCAAAACACTTTGACTATTTTATTTTTTGTTTTAGAGATAGCTTATATATAAACTGTTATCTTACAAGTGTTTATGCTATAAGTGCCTGATTAACTTGTTTATCCATAGAGAACCGTAATCCTTTGATGCTGCTGAATTGAAAATGTATTAGATAATATACTCGACCTTTTGAGAAACCTTTACTACAGCAACATGCAACGTTTTCCCACTCAGTAGAAGAACCTACAATAATTTTGTTTATCTAGGCCTGCATTTTTACCGTCTCGATTTGTTTAAAGTGTCTCTCTTTTAAAGTCAGCAACTGATGACTGTTGAATTTATCAGGGTTTCAGGAAAATTGATGCAGATCACTGGGAATTTGCAAATGAAAACTTCATTAGGGGTCAAAAGCATTTGCTGAAGAATATACGTAGAAGGAAACATCCACATGTTGCTGCAGATCAGCAAAAACCATTGCCGCCAAAAGACAATCGCGATGAACCATCACAAGAAGCAGTAAATCATGGCCTTTGGAGAGAAGTTGAGAATCTAAAATCGGATAGAAAAACCCTCACGCAGGAGTTGGTCAAACATAAGCAGCACCTTGAATCTTCTGAGAGTAAGCTGCTTCTACTGAGTGATCGCCTTGAAGGAATGGAGAAGCATCAGCAGCAGATGCTCTCATTCTTGGTCATGGTCGTGCAATGCCCTGGATTCTTGGTTCAGCTGCTTCACCCTAAGGAAAATAATTGGCGTTTCTCTGAAGCAGGGAATATGTGGGACCAAGGTAACCAAGATGACAGACCAGTTTCTTCTGATGGGATGATTATAAAGTATACACCACCTGTTGCTGAAAAACCAAAACCTGTTGTTCCACGATCTCCTGCCTTTAATAAGCAACCAGAACCTGAGGTTTCTACAGATGGGTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAATTGCTTCTAGATGAGAAATTGTGCCCATTAGATAATCATTCTCCGTTTCTTGTACCTGATTTACCGGATGACGGTTCGTGGGAACAACTATTTTTAGGCAGTCCTATCCTAAAAAATGTTGAAGATACTGATCGTGAAAACGAGGAGCAAACTGTTAGTGACATGGAGATGGATCACATCATATCTGAAGCTCTAAATGAAACATCTGATTTTGAAGCGATGATTATGGAAATGGAGAACACTCACGCATGA
Protein sequence

>MS.gene015638.t1

MVKAATASEKGGSGSVAPFLNKCYDMVEDPSTDSIISWSADGNNSFIISNADQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKHPHVAADQQKPLPPKDNRDEPSQEAVNHGLWREVENLKSDRKTLTQELVKHKQHLESSESKLLLLSDRLEGMEKHQQQMLSFLVMVVQCPGFLVQLLHPKENNWRFSEAGNMWDQGNQDDRPVSSDGMIIKYTPPVAEKPKPVVPRSPAFNKQPEPEVSTDGLKDLCISSEFLKLLLDEKLCPLDNHSPFLVPDLPDDGSWEQLFLGSPILKNVEDTDRENEEQTVSDMEMDHIISEALNETSDFEAMIMEMENTHA