Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015721.t1 | XP_003630849.1 | 97.6 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 4.60E-229 | 803.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015721.t1 | Q8RWD0 | 43.3 | 453 | 168 | 21 | 11 | 415 | 6 | 417 | 8.0e-65 | 249.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015721.t1 | G7L9P2 | 97.6 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 3.3e-229 | 803.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015721.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015721.t1 | MTR_8g104190 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 849 |
| MS.gene015721.t1 | MTR_1g110870 | 42.222 | 450 | 187 | 17 | 11 | 412 | 9 | 433 | 4.66e-83 | 261 |
| MS.gene015721.t1 | MTR_5g072780 | 40.288 | 139 | 55 | 4 | 274 | 400 | 94 | 216 | 5.68e-18 | 82.8 |
| MS.gene015721.t1 | MTR_7g032240 | 38.235 | 170 | 55 | 8 | 276 | 400 | 187 | 351 | 2.62e-16 | 80.1 |
| MS.gene015721.t1 | MTR_4g127420 | 46.000 | 100 | 38 | 3 | 297 | 394 | 293 | 378 | 1.17e-13 | 72.4 |
| MS.gene015721.t1 | MTR_4g128930 | 53.623 | 69 | 30 | 1 | 333 | 401 | 275 | 341 | 1.35e-12 | 69.3 |
| MS.gene015721.t1 | MTR_3g105710 | 70.455 | 44 | 13 | 0 | 358 | 401 | 232 | 275 | 1.44e-11 | 65.1 |
| MS.gene015721.t1 | MTR_7g018170 | 70.455 | 44 | 13 | 0 | 358 | 401 | 327 | 370 | 2.05e-11 | 65.5 |
| MS.gene015721.t1 | MTR_1g013450 | 68.182 | 44 | 14 | 0 | 358 | 401 | 255 | 298 | 2.30e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015721.t1 | AT1G25440 | 42.558 | 430 | 175 | 16 | 11 | 400 | 6 | 403 | 6.45e-84 | 263 |
| MS.gene015721.t1 | AT1G68520 | 41.981 | 424 | 186 | 14 | 11 | 402 | 6 | 401 | 5.22e-83 | 260 |
| MS.gene015721.t1 | AT1G73870 | 38.303 | 436 | 188 | 17 | 1 | 402 | 1 | 389 | 3.63e-67 | 219 |
| MS.gene015721.t1 | AT1G49130 | 44.755 | 143 | 58 | 5 | 16 | 151 | 22 | 150 | 3.59e-27 | 110 |
| MS.gene015721.t1 | AT1G49130 | 46.729 | 107 | 36 | 3 | 295 | 401 | 236 | 321 | 4.82e-18 | 85.1 |
| MS.gene015721.t1 | AT1G49130 | 44.755 | 143 | 58 | 5 | 16 | 151 | 15 | 143 | 4.03e-27 | 110 |
| MS.gene015721.t1 | AT1G49130 | 48.598 | 107 | 34 | 4 | 295 | 401 | 229 | 314 | 4.93e-18 | 84.7 |
| MS.gene015721.t1 | AT5G57180 | 43.704 | 135 | 55 | 3 | 269 | 400 | 309 | 425 | 2.82e-21 | 95.9 |
| MS.gene015721.t1 | AT1G07050 | 38.286 | 175 | 80 | 5 | 235 | 400 | 38 | 193 | 3.70e-20 | 88.2 |
| MS.gene015721.t1 | AT4G25990 | 47.458 | 118 | 42 | 4 | 285 | 400 | 284 | 383 | 1.19e-19 | 90.5 |
| MS.gene015721.t1 | AT5G57180 | 41.860 | 129 | 54 | 3 | 269 | 394 | 309 | 419 | 1.21e-17 | 84.7 |
| MS.gene015721.t1 | AT5G14370 | 42.593 | 108 | 59 | 2 | 294 | 400 | 231 | 336 | 1.92e-16 | 80.5 |
| MS.gene015721.t1 | AT4G25990 | 42.105 | 133 | 42 | 5 | 285 | 400 | 284 | 398 | 2.66e-16 | 80.9 |
| MS.gene015721.t1 | AT4G25990 | 45.536 | 112 | 41 | 4 | 285 | 394 | 284 | 377 | 4.85e-16 | 79.7 |
| MS.gene015721.t1 | AT1G07050 | 36.095 | 169 | 80 | 5 | 235 | 394 | 38 | 187 | 7.45e-16 | 76.3 |
| MS.gene015721.t1 | AT5G57660 | 70.455 | 44 | 13 | 0 | 358 | 401 | 285 | 328 | 1.91e-11 | 65.5 |
| MS.gene015721.t1 | AT5G24930 | 70.455 | 44 | 13 | 0 | 358 | 401 | 295 | 338 | 2.09e-11 | 65.5 |
| MS.gene015721.t1 | AT2G24790 | 70.455 | 44 | 13 | 0 | 358 | 401 | 229 | 272 | 3.39e-11 | 64.3 |
| MS.gene015721.t1 | AT2G24790 | 53.030 | 66 | 27 | 1 | 16 | 77 | 2 | 67 | 4.95e-11 | 63.9 |
| MS.gene015721.t1 | AT2G24790 | 53.030 | 66 | 27 | 1 | 16 | 77 | 2 | 67 | 3.66e-11 | 63.2 |
| MS.gene015721.t1 | AT3G02380 | 57.895 | 57 | 24 | 0 | 358 | 414 | 278 | 334 | 9.34e-11 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAACGTCCTTTCATTCT+TGG | 0.215353 | 4.3:+1801320 | None:intergenic |
| TGATTCATGGCAAAACTTAT+TGG | 0.234314 | 4.3:-1801761 | MS.gene015721:intron |
| GGATGAAGAACTTGATGATT+TGG | 0.268535 | 4.3:-1802046 | MS.gene015721:CDS |
| TTGTCATGGTTGTGACAATT+TGG | 0.309873 | 4.3:-1802616 | MS.gene015721:CDS |
| ATCACATGCTCTTGCTGTCT+TGG | 0.344245 | 4.3:+1802692 | None:intergenic |
| ATGGAGAAGTAAGAAGCTTA+AGG | 0.355490 | 4.3:-1801475 | MS.gene015721:CDS |
| AAATGAAATGTTAAAGGTTA+AGG | 0.373350 | 4.3:-1802067 | MS.gene015721:CDS |
| TCTTCATCACCTCCGAGTTC+AGG | 0.373850 | 4.3:+1802384 | None:intergenic |
| CAGGGTTCAAGTGGTGTAGA+TGG | 0.388893 | 4.3:-1801494 | MS.gene015721:CDS |
| TCATGTCAGTGGTAATTAGT+TGG | 0.390665 | 4.3:+1801257 | None:intergenic |
| CTTCCACTTGTTCCTGAACT+CGG | 0.406110 | 4.3:-1802396 | MS.gene015721:CDS |
| TGGAGAAGTAAGAAGCTTAA+GGG | 0.411931 | 4.3:-1801474 | MS.gene015721:CDS |
| TCAATTGTGATGATGATTCA+TGG | 0.426751 | 4.3:-1801774 | MS.gene015721:CDS |
| GATGCAGATGCAGGTGCCTT+GGG | 0.430470 | 4.3:-1802717 | MS.gene015721:CDS |
| AAAGGGCTGACATCGAAAAC+TGG | 0.442133 | 4.3:+1802297 | None:intergenic |
| CCTTAGCAGACGCGGTTTGA+AGG | 0.445349 | 4.3:+1802550 | None:intergenic |
| AGAAGATAAGATATGAAGTA+AGG | 0.448594 | 4.3:-1801364 | MS.gene015721:CDS |
| CCTTCAAACCGCGTCTGCTA+AGG | 0.473927 | 4.3:-1802550 | MS.gene015721:CDS |
| GAGATTCAAGAGAATTCATC+AGG | 0.476882 | 4.3:-1802135 | MS.gene015721:CDS |
| GTTGAAAGTTTACTTGGTGT+TGG | 0.483990 | 4.3:-1802165 | MS.gene015721:CDS |
| TTAATGGGAAGTGGTGGAGA+TGG | 0.488245 | 4.3:-1801446 | MS.gene015721:CDS |
| TCTTGCTGTCTTGGCTCCCA+AGG | 0.495634 | 4.3:+1802701 | None:intergenic |
| TTATAAACAAGAGAATGAAA+TGG | 0.496628 | 4.3:-1802100 | MS.gene015721:CDS |
| TCATCACAATTGAACTTAGG+AGG | 0.497589 | 4.3:+1801784 | None:intergenic |
| CCTTTCAGTAATAGTAGTGT+TGG | 0.498513 | 4.3:-1801931 | MS.gene015721:CDS |
| TTGAAAGTTTACTTGGTGTT+GGG | 0.498767 | 4.3:-1802164 | MS.gene015721:CDS |
| TGATGCAGATGCAGGTGCCT+TGG | 0.503435 | 4.3:-1802718 | MS.gene015721:CDS |
| GCTAATGTTGAAAGTTTACT+TGG | 0.513191 | 4.3:-1802171 | MS.gene015721:CDS |
| GGAGGGTTTGCAGTAGTCCA+TGG | 0.516903 | 4.3:+1801802 | None:intergenic |
| ATGGGAAGTGGTGGAGATGG+AGG | 0.526179 | 4.3:-1801443 | MS.gene015721:CDS |
| ATGAAGAGGTTATTACTGAA+TGG | 0.526407 | 4.3:-1801846 | MS.gene015721:CDS |
| TACAAGTCTCTAAATCGAAA+GGG | 0.527173 | 4.3:+1802280 | None:intergenic |
| GATGATGCTTTCCTTTGTCA+TGG | 0.527738 | 4.3:-1802630 | MS.gene015721:CDS |
| GGAGAAGTAAGAAGCTTAAG+GGG | 0.532873 | 4.3:-1801473 | MS.gene015721:CDS |
| ATTAGCAAGTAGACACGAAA+GGG | 0.537189 | 4.3:-1802577 | MS.gene015721:CDS |
| TCATCATCACAATTGAACTT+AGG | 0.539550 | 4.3:+1801781 | None:intergenic |
| GTACAAGTCTCTAAATCGAA+AGG | 0.540349 | 4.3:+1802279 | None:intergenic |
| CATCACAATTGAACTTAGGA+GGG | 0.544271 | 4.3:+1801785 | None:intergenic |
| GAAGAGAAGCAAGAGTATCA+AGG | 0.553110 | 4.3:-1801421 | MS.gene015721:CDS |
| TTTGAGACTAAACTATGAAG+AGG | 0.554254 | 4.3:-1801860 | MS.gene015721:CDS |
| GAAAAGAGACCAAGAATGAA+AGG | 0.557120 | 4.3:-1801329 | MS.gene015721:CDS |
| GGCAAGGTTCTCCTTCTCCA+TGG | 0.557589 | 4.3:-1801819 | MS.gene015721:CDS |
| ATTACTGAATGGAGCAGGCA+AGG | 0.558438 | 4.3:-1801835 | MS.gene015721:CDS |
| AGGTTATTACTGAATGGAGC+AGG | 0.563538 | 4.3:-1801840 | MS.gene015721:CDS |
| TATTGATTTCAGGGTTCAAG+TGG | 0.571240 | 4.3:-1801503 | MS.gene015721:intron |
| ATGAAAGGTGATGCAGATGC+AGG | 0.575851 | 4.3:-1802726 | MS.gene015721:CDS |
| ACAACAACAGCAACGTCTCA+AGG | 0.580637 | 4.3:-1802445 | MS.gene015721:CDS |
| GGGCAATTAATGGGAAGTGG+TGG | 0.598711 | 4.3:-1801452 | MS.gene015721:CDS |
| CCTCCGAGTTCAGGAACAAG+TGG | 0.605265 | 4.3:+1802393 | None:intergenic |
| TATTAGCAAGTAGACACGAA+AGG | 0.608632 | 4.3:-1802578 | MS.gene015721:CDS |
| TTTGCAGTAGTCCATGGAGA+AGG | 0.610228 | 4.3:+1801808 | None:intergenic |
| CCAACACTACTATTACTGAA+AGG | 0.612166 | 4.3:+1801931 | None:intergenic |
| TAACAACAACAGCACAAGCA+TGG | 0.618954 | 4.3:-1802527 | MS.gene015721:CDS |
| TGATATTGATGAGGCTGATG+AGG | 0.627860 | 4.3:-1802340 | MS.gene015721:CDS |
| ACTACTTGTTGATATTGATG+AGG | 0.630146 | 4.3:-1802349 | MS.gene015721:CDS |
| AATTGTCACAACCATGACAA+AGG | 0.630486 | 4.3:+1802619 | None:intergenic |
| TGTTGTTACCTTAGCAGACG+CGG | 0.639555 | 4.3:+1802542 | None:intergenic |
| CATGGCACAGTGGATTCACA+AGG | 0.649315 | 4.3:-1802509 | MS.gene015721:CDS |
| TCTATGATTACAGACATGAA+AGG | 0.650216 | 4.3:-1802741 | MS.gene015721:CDS |
| CTCGGAGGTGATGAAGAACA+AGG | 0.666390 | 4.3:-1802378 | MS.gene015721:CDS |
| CCACTTGTTCCTGAACTCGG+AGG | 0.668175 | 4.3:-1802393 | MS.gene015721:CDS |
| GTTTAAGAAGAAGAGCACGT+TGG | 0.700628 | 4.3:-1802665 | MS.gene015721:CDS |
| GAGAAGTAAGAAGCTTAAGG+GGG | 0.726133 | 4.3:-1801472 | MS.gene015721:CDS |
| ACAGCACAAGCATGGCACAG+TGG | 0.751381 | 4.3:-1802519 | MS.gene015721:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTTAAACGACA+AGG | - | chr4.3:1802359-1802378 | MS.gene015721:CDS | 15.0% |
| !!! | TATTTTATTTTAAACGACAA+GGG | - | chr4.3:1802360-1802379 | MS.gene015721:CDS | 15.0% |
| !! | AAATGAAATGTTAAAGGTTA+AGG | - | chr4.3:1801933-1801952 | MS.gene015721:CDS | 20.0% |
| !! | ATCCAAAAATGAAATGTTAA+AGG | - | chr4.3:1801927-1801946 | MS.gene015721:CDS | 20.0% |
| !! | TTATAAACAAGAGAATGAAA+TGG | - | chr4.3:1801900-1801919 | MS.gene015721:CDS | 20.0% |
| !!! | AACCTTTAACATTTCATTTT+TGG | + | chr4.3:1801932-1801951 | None:intergenic | 20.0% |
| !!! | TTTTGTGAATATTGATTTCA+GGG | - | chr4.3:1802488-1802507 | MS.gene015721:CDS | 20.0% |
| ! | AGAAGATAAGATATGAAGTA+AGG | - | chr4.3:1802636-1802655 | MS.gene015721:CDS | 25.0% |
| !!! | GTTTTGTGAATATTGATTTC+AGG | - | chr4.3:1802487-1802506 | MS.gene015721:CDS | 25.0% |
| ATGAAGAGGTTATTACTGAA+TGG | - | chr4.3:1802154-1802173 | MS.gene015721:CDS | 30.0% | |
| GCTAATGTTGAAAGTTTACT+TGG | - | chr4.3:1801829-1801848 | MS.gene015721:CDS | 30.0% | |
| TACAAGTCTCTAAATCGAAA+GGG | + | chr4.3:1801723-1801742 | None:intergenic | 30.0% | |
| TCATCATCACAATTGAACTT+AGG | + | chr4.3:1802222-1802241 | None:intergenic | 30.0% | |
| TGATTCATGGCAAAACTTAT+TGG | - | chr4.3:1802239-1802258 | MS.gene015721:CDS | 30.0% | |
| TTCAGTGATAAACAAGTAAG+TGG | + | chr4.3:1802423-1802442 | None:intergenic | 30.0% | |
| ! | ACTACTTGTTGATATTGATG+AGG | - | chr4.3:1801651-1801670 | MS.gene015721:intron | 30.0% |
| ! | TCAATTGTGATGATGATTCA+TGG | - | chr4.3:1802226-1802245 | MS.gene015721:CDS | 30.0% |
| ! | TTTGAGACTAAACTATGAAG+AGG | - | chr4.3:1802140-1802159 | MS.gene015721:CDS | 30.0% |
| !! | TTGAAAGTTTACTTGGTGTT+GGG | - | chr4.3:1801836-1801855 | MS.gene015721:CDS | 30.0% |
| !!! | AAATGATGCTGTTGATTTTG+AGG | - | chr4.3:1801750-1801769 | MS.gene015721:intron | 30.0% |
| AATTGTCACAACCATGACAA+AGG | + | chr4.3:1801384-1801403 | None:intergenic | 35.0% | |
| ACAAAACGTCCTTTCATTCT+TGG | + | chr4.3:1802683-1802702 | None:intergenic | 35.0% | |
| ATGGAGAAGTAAGAAGCTTA+AGG | - | chr4.3:1802525-1802544 | MS.gene015721:CDS | 35.0% | |
| ATTAGCAAGTAGACACGAAA+GGG | - | chr4.3:1801423-1801442 | MS.gene015721:CDS | 35.0% | |
| CATCACAATTGAACTTAGGA+GGG | + | chr4.3:1802218-1802237 | None:intergenic | 35.0% | |
| CCAACACTACTATTACTGAA+AGG | + | chr4.3:1802072-1802091 | None:intergenic | 35.0% | |
| CCTTTCAGTAATAGTAGTGT+TGG | - | chr4.3:1802069-1802088 | MS.gene015721:CDS | 35.0% | |
| GAAAAGAGACCAAGAATGAA+AGG | - | chr4.3:1802671-1802690 | MS.gene015721:CDS | 35.0% | |
| GAGATTCAAGAGAATTCATC+AGG | - | chr4.3:1801865-1801884 | MS.gene015721:CDS | 35.0% | |
| GTACAAGTCTCTAAATCGAA+AGG | + | chr4.3:1801724-1801743 | None:intergenic | 35.0% | |
| TATTAGCAAGTAGACACGAA+AGG | - | chr4.3:1801422-1801441 | MS.gene015721:CDS | 35.0% | |
| TCATCACAATTGAACTTAGG+AGG | + | chr4.3:1802219-1802238 | None:intergenic | 35.0% | |
| TGGAGAAGTAAGAAGCTTAA+GGG | - | chr4.3:1802526-1802545 | MS.gene015721:CDS | 35.0% | |
| TTGTCATGGTTGTGACAATT+TGG | - | chr4.3:1801384-1801403 | MS.gene015721:CDS | 35.0% | |
| ! | CAAGTGATGAGGTTTTTCAT+TGG | - | chr4.3:1801995-1802014 | MS.gene015721:CDS | 35.0% |
| ! | GGATGAAGAACTTGATGATT+TGG | - | chr4.3:1801954-1801973 | MS.gene015721:CDS | 35.0% |
| ! | TTTTGACATGACAAGTGATG+AGG | - | chr4.3:1801984-1802003 | MS.gene015721:CDS | 35.0% |
| !! | GTTGAAAGTTTACTTGGTGT+TGG | - | chr4.3:1801835-1801854 | MS.gene015721:CDS | 35.0% |
| !! | TATTGATTTCAGGGTTCAAG+TGG | - | chr4.3:1802497-1802516 | MS.gene015721:CDS | 35.0% |
| !! | TCGACGAATTTTTGTTGTGA+CGG | + | chr4.3:1801531-1801550 | None:intergenic | 35.0% |
| !! | TGAAAGGACGTTTTGTTAAG+AGG | - | chr4.3:1802687-1802706 | MS.gene015721:CDS | 35.0% |
| !! | TTTTGAGGAAATGTGTGACT+TGG | - | chr4.3:1801765-1801784 | MS.gene015721:CDS | 35.0% |
| AAGCTTAAGGGGGCAATTAA+TGG | - | chr4.3:1802538-1802557 | MS.gene015721:CDS | 40.0% | |
| AGCTTAAGGGGGCAATTAAT+GGG | - | chr4.3:1802539-1802558 | MS.gene015721:CDS | 40.0% | |
| AGGTTATTACTGAATGGAGC+AGG | - | chr4.3:1802160-1802179 | MS.gene015721:CDS | 40.0% | |
| GAGAAGTAAGAAGCTTAAGG+GGG | - | chr4.3:1802528-1802547 | MS.gene015721:CDS | 40.0% | |
| GATGATGCTTTCCTTTGTCA+TGG | - | chr4.3:1801370-1801389 | MS.gene015721:CDS | 40.0% | |
| GGAGAAGTAAGAAGCTTAAG+GGG | - | chr4.3:1802527-1802546 | MS.gene015721:CDS | 40.0% | |
| TAACAACAACAGCACAAGCA+TGG | - | chr4.3:1801473-1801492 | MS.gene015721:CDS | 40.0% | |
| TGATATTGATGAGGCTGATG+AGG | - | chr4.3:1801660-1801679 | MS.gene015721:intron | 40.0% | |
| ! | GTTTAAGAAGAAGAGCACGT+TGG | - | chr4.3:1801335-1801354 | MS.gene015721:CDS | 40.0% |
| !! | CGACGAATTTTTGTTGTGAC+GGG | + | chr4.3:1801530-1801549 | None:intergenic | 40.0% |
| !! | GAAGAGAAGCAAGAGTATCA+AGG | - | chr4.3:1802579-1802598 | MS.gene015721:CDS | 40.0% |
| !! | GACGAATTTTTGTTGTGACG+GGG | + | chr4.3:1801529-1801548 | None:intergenic | 40.0% |
| AAAGGGCTGACATCGAAAAC+TGG | + | chr4.3:1801706-1801725 | None:intergenic | 45.0% | |
| ACAACAACAGCAACGTCTCA+AGG | - | chr4.3:1801555-1801574 | MS.gene015721:intron | 45.0% | |
| ATGAAAGGTGATGCAGATGC+AGG | - | chr4.3:1801274-1801293 | MS.gene015721:CDS | 45.0% | |
| ATTACTGAATGGAGCAGGCA+AGG | - | chr4.3:1802165-1802184 | MS.gene015721:CDS | 45.0% | |
| CTTCCACTTGTTCCTGAACT+CGG | - | chr4.3:1801604-1801623 | MS.gene015721:intron | 45.0% | |
| GGTTGAATCTCAGTAGATCG+TGG | - | chr4.3:1802381-1802400 | MS.gene015721:CDS | 45.0% | |
| TGTTGTTACCTTAGCAGACG+CGG | + | chr4.3:1801461-1801480 | None:intergenic | 45.0% | |
| TTTGCAGTAGTCCATGGAGA+AGG | + | chr4.3:1802195-1802214 | None:intergenic | 45.0% | |
| ! | AAGAGGACAGCATGTTTTGC+TGG | - | chr4.3:1802704-1802723 | MS.gene015721:CDS | 45.0% |
| ! | ATCACATGCTCTTGCTGTCT+TGG | + | chr4.3:1801311-1801330 | None:intergenic | 45.0% |
| ! | TTAATGGGAAGTGGTGGAGA+TGG | - | chr4.3:1802554-1802573 | MS.gene015721:CDS | 45.0% |
| AGGGGGCAATTAATGGGAAG+TGG | - | chr4.3:1802545-1802564 | MS.gene015721:CDS | 50.0% | |
| CAGGGTTCAAGTGGTGTAGA+TGG | - | chr4.3:1802506-1802525 | MS.gene015721:CDS | 50.0% | |
| CTCGGAGGTGATGAAGAACA+AGG | - | chr4.3:1801622-1801641 | MS.gene015721:intron | 50.0% | |
| GGGCAATTAATGGGAAGTGG+TGG | - | chr4.3:1802548-1802567 | MS.gene015721:CDS | 50.0% | |
| TCTTCATCACCTCCGAGTTC+AGG | + | chr4.3:1801619-1801638 | None:intergenic | 50.0% | |
| ! | AGGACAGCATGTTTTGCTGG+AGG | - | chr4.3:1802707-1802726 | MS.gene015721:CDS | 50.0% |
| ! | CATGGCACAGTGGATTCACA+AGG | - | chr4.3:1801491-1801510 | MS.gene015721:CDS | 50.0% |
| ACAGCACAAGCATGGCACAG+TGG | - | chr4.3:1801481-1801500 | MS.gene015721:CDS | 55.0% | |
| CCACTTGTTCCTGAACTCGG+AGG | - | chr4.3:1801607-1801626 | MS.gene015721:intron | 55.0% | |
| CCTCCGAGTTCAGGAACAAG+TGG | + | chr4.3:1801610-1801629 | None:intergenic | 55.0% | |
| CCTTAGCAGACGCGGTTTGA+AGG | + | chr4.3:1801453-1801472 | None:intergenic | 55.0% | |
| CCTTCAAACCGCGTCTGCTA+AGG | - | chr4.3:1801450-1801469 | MS.gene015721:CDS | 55.0% | |
| GATGCAGATGCAGGTGCCTT+GGG | - | chr4.3:1801283-1801302 | MS.gene015721:CDS | 55.0% | |
| GGAGGGTTTGCAGTAGTCCA+TGG | + | chr4.3:1802201-1802220 | None:intergenic | 55.0% | |
| GGCAAGGTTCTCCTTCTCCA+TGG | - | chr4.3:1802181-1802200 | MS.gene015721:CDS | 55.0% | |
| TGATGCAGATGCAGGTGCCT+TGG | - | chr4.3:1801282-1801301 | MS.gene015721:CDS | 55.0% | |
| ! | ATGGGAAGTGGTGGAGATGG+AGG | - | chr4.3:1802557-1802576 | MS.gene015721:CDS | 55.0% |
| ! | TCTTGCTGTCTTGGCTCCCA+AGG | + | chr4.3:1801302-1801321 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1801262 | 1802760 | 1801262 | ID=MS.gene015721 |
| chr4.3 | mRNA | 1801262 | 1802760 | 1801262 | ID=MS.gene015721.t1;Parent=MS.gene015721 |
| chr4.3 | exon | 1801762 | 1802760 | 1801762 | ID=MS.gene015721.t1.exon1;Parent=MS.gene015721.t1 |
| chr4.3 | CDS | 1801762 | 1802760 | 1801762 | ID=cds.MS.gene015721.t1;Parent=MS.gene015721.t1 |
| chr4.3 | exon | 1801262 | 1801513 | 1801262 | ID=MS.gene015721.t1.exon2;Parent=MS.gene015721.t1 |
| chr4.3 | CDS | 1801262 | 1801513 | 1801262 | ID=cds.MS.gene015721.t1;Parent=MS.gene015721.t1 |
| Gene Sequence |
| Protein sequence |
