AlfalfaGEDB | MS.gene01574

M. sativa cultivar XinJiangDaYe / MS.gene01574

KEGG: K07198
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF03822.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01574.t1	KEH36611.1	94	417	25	0	1	417	1	417	3.70E-226	793.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01574.t1	Q9LWM4	63.4	407	147	2	1	407	1	405	1.0e-147	524.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01574.t1	G7ZXJ3	94.0	417	25	0	1	417	1	417	2.6e-226	793.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01574.t1	MTR_2g016340	94.005	417	25	0	1	417	1	417	0.0	818
MS.gene01574.t1	MTR_4g029020	59.804	408	142	4	1	400	1	394	1.83e-174	496
MS.gene01574.t1	MTR_7g072575	60.149	404	152	7	1	400	1	399	4.27e-174	495
MS.gene01574.t1	MTR_5g075060	53.756	426	162	6	1	400	1	417	2.16e-160	460
MS.gene01574.t1	MTR_3g466400	54.774	398	176	4	4	400	6	400	5.03e-153	441
MS.gene01574.t1	MTR_4g131060	55.198	404	163	4	5	407	11	397	1.94e-151	436
MS.gene01574.t1	MTR_8g086380	50.698	430	184	6	2	407	16	441	1.22e-145	424
MS.gene01574.t1	MTR_2g049790	52.381	399	184	4	11	407	22	416	1.38e-144	420
MS.gene01574.t1	MTR_5g088350	51.020	392	179	6	12	400	13	394	1.09e-139	407
MS.gene01574.t1	MTR_5g088350	50.376	399	185	6	12	407	13	401	2.64e-139	405

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene01574.t1	AT5G45820	62.530	411	131	5	1	407	1	392	0.0	513
MS.gene01574.t1	AT5G58380	55.474	411	170	2	1	400	1	409	3.32e-163	468
MS.gene01574.t1	AT5G01810	58.250	400	149	5	1	400	1	382	6.75e-162	462
MS.gene01574.t1	AT5G01810	58.250	400	149	5	1	400	1	382	6.75e-162	462
MS.gene01574.t1	AT5G07070	57.037	405	161	5	1	400	1	397	4.38e-157	451
MS.gene01574.t1	AT4G30960	58.519	405	152	6	5	407	16	406	1.01e-155	447
MS.gene01574.t1	AT5G45810	53.919	421	172	7	3	407	19	433	4.78e-153	442
MS.gene01574.t1	AT4G18700	53.511	413	177	5	6	407	20	428	8.59e-152	439
MS.gene01574.t1	AT1G30270	53.383	399	180	4	11	407	30	424	4.69e-149	432
MS.gene01574.t1	AT1G30270	53.383	399	180	4	11	407	30	424	9.36e-149	431

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Find 81 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTTGGTTTAGAAAA+GGG	0.395590	2.2:-67334011	MS.gene01574:CDS
AAACTTTGGCAAAAGTTCCT+TGG	0.463306	2.2:+67334739	None:intergenic
AAAGCGATGATCATGAGAGT+CGG	0.667382	2.2:-67334663	MS.gene01574:CDS
AAAGGGTATAAACAGATTGA+AGG	0.512265	2.2:-67333994	MS.gene01574:CDS
AAATCCAATCAGCTTCTCTC+TGG	0.462551	2.2:-67331657	MS.gene01574:intron
AAATGGGATTGTTAGAGTGG+AGG	0.599713	2.2:-67333674	MS.gene01574:CDS
AAGGCAGATATTTGGTCTTG+TGG	0.540621	2.2:-67334222	MS.gene01574:CDS
AAGGGCTTACCGTTTGGAGA+TGG	0.546870	2.2:+67331611	None:intergenic
AAGTGTCTCGAGGGAAGCTG+AGG	0.600611	2.2:-67334497	MS.gene01574:CDS
AATCTTCTCCTCGACGAAAA+TGG	0.298418	2.2:-67334381	MS.gene01574:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGCTCTCAAAAATAAAG+TGG	+	chr2.2:67333765-67333784	None:intergenic	30.0%
AACTTCAGTGTTGTATGTTA+AGG	-	chr2.2:67334565-67334584	MS.gene01574:CDS	30.0%
AGATGAGAAAGATTTGACTA+TGG	+	chr2.2:67332989-67333008	None:intergenic	30.0%
ATCTCATCTCTATGACAAAT+GGG	-	chr2.2:67333005-67333024	MS.gene01574:intron	30.0%
ATGTAAGAGGAACTTTCATT+TGG	-	chr2.2:67334003-67334022	MS.gene01574:CDS	30.0%
ATGTAATGATCATATCGTCA+TGG	+	chr2.2:67331295-67331314	None:intergenic	30.0%
ATGTATGTATATGAAACGTC+AGG	+	chr2.2:67332701-67332720	None:intergenic	30.0%
CAAACAATTTCACTTAGAGA+AGG	+	chr2.2:67331198-67331217	None:intergenic	30.0%
CAATGCATTGTTATATGTAG+GGG	+	chr2.2:67332154-67332173	None:intergenic	30.0%
CAATTAATATGGGATTAGGA+GGG	+	chr2.2:67332632-67332651	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	67329911	67334817	67329911	ID=MS.gene01574
chr2.2	mRNA	67329911	67334817	67329911	ID=MS.gene01574.t1;Parent=MS.gene01574
chr2.2	exon	67333621	67334817	67333621	ID=MS.gene01574.t1.exon1;Parent=MS.gene01574.t1
chr2.2	CDS	67333621	67334817	67333621	ID=cds.MS.gene01574.t1;Parent=MS.gene01574.t1
chr2.2	exon	67331621	67331667	67331621	ID=MS.gene01574.t1.exon2;Parent=MS.gene01574.t1
chr2.2	CDS	67331621	67331667	67331621	ID=cds.MS.gene01574.t1;Parent=MS.gene01574.t1
chr2.2	exon	67329911	67329932	67329911	ID=MS.gene01574.t1.exon3;Parent=MS.gene01574.t1
chr2.2	CDS	67329911	67329932	67329911	ID=cds.MS.gene01574.t1;Parent=MS.gene01574.t1

Gene Sequence

>MS.gene01574

ATGGAGAACAAAGCAACAATTCTAATGCATAAGTATGAGGTAGGACGCATGCTTGGCCAAGGAACTTTTGCCAAAGTTTACCATGCAAGGAACTTAAAGACAGGACAAAATGTTGCCATCAAAGTGTTCGACAAAGCGATGATCATGAGAGTCGGTTTGAAGGAGCAAATCAAGCGTGAAATCTCGGTGATGCGTCTTGTTCGACACCCTAACATTGTCGAATTCTACGAGGTCATGGCAAGCAAAACAAAGATATATTTTGCAATGGAACAAGTGAAAGGTGGTGAGCTTTTCCATAAAGTGTCTCGAGGGAAGCTGAGGGAAGATATGGCTAGGAAATATTTCCAGCAACTTATTGCAGCTGTTGATCATTGTCATAGAAGAGGGATTTATCATCGCGACCTTAAACCGGAAAATCTTCTCCTCGACGAAAATGGTGACCTTAAAGTTGCTGATTTTGGTCTTAGTGCATTGTTGGAATCAAAAAAGAAAGATGATCTTCTTCATACAACATGTGGTACTCCAGCTTATGTAGCACCTGAGATTATCAAGAAGAAAGGCTATGATGGAGCCAAGGCAGATATTTGGTCTTGTGGTGTTATTCTCTTTGTTCTATTGGCAGGTTTTCTTCCTTTCAATGATAGAAATTTAATGGAGATGTATAAGAAGATTGCAAATGCTGATTTCAAGTTTCCACAATGGTTTCATTCTGATGTGAAAAGGCTTCTTTATAGAATCCTTGATCCTGATCCAAGAACAAGAATTACTATTAACAAGATTATGCAAAATAGTTGGTTTAGAAAAGGGTATAAACAGATTGAAGGACCACATTTATCGCCTACACACGGCGATATCTCAGATGTTCATAATGCATTTGATGATTTGTCACCACTATCAAGTCCAATGTCTGTTAAAGATGAACAATGTCCTATGAAACTATATTGTTTCAATGCATTTGATATCATATCACTCTCTTCGGGACTTGATCTTTCGGGTTTGTTTGAAAAAGATACGAGTGAAGGACAACATGCAAGATTTGCTACAAAAAGACCACCTTCAACAATTGTGTCAAAACTTGAAGAGACAGCACAATCAGTTGGTAGATTTAAGGTGATGAAGCAAAATGGGATTGTTAGAGTGGAGGGATTTGAGACAGGGATAAATGAACAACTCACAATTGATACAGAAATTTTTGAAGTTACATCTTCATTTTATATTGTTGAGGTGAACAAAATTTCTGGAGACACATTGGAATATAGGAAATTCTGGAACCAATACTTAAAGCCTTCTCTAAGTGAAATTGTTTGGGATTCGCAAGGATATGAACAATACGTATAAAAAAGAGCAGTCTAGTGCACTAAAGCTCCCGCATACGCAAGGTCCATGACGATATGATCATTACATATAGTAGCTTCAAAAAAGTATTTATAGTTTTTTTTTTTTTCTTGGATAGAAGAAAGTGCTCTATTTGGGAGCTTAAATCCTTGGCAAAATCCAAAGGTAAATGTTTCCTATGGAATTGTCATCGAAATCCGCAGGAAAATCCATAGGCAATTAGCAAATTTCTAATAGTGTTAACATACTTAGTGAAACACTCTAAACCTACTTGTATTACGTAATTGTTGAGAGTCAAATACAATGTTGAATGAATTTGAATCTCACAATGAAAATGTCTGAGCACATATATGCATCAAATATTAAATTAATTTAATTGTCACTCTCAAAATCTAGCTCATAAGATGAGTGCGTCCATATGCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGCATAGCTTAAAAACTTCAATAATGTGTTACTCAAACACAACCTTAAACACGAACAAGACAAGACAATAAATAAAATATCTTACATTTTTTATAAGATCGTCTCATATACATGTTCTTATGTCAGCTCTAATGTTTAAGTACAAGATTTTGTTCTTACACATTACACTGTCACGCTGACACCACCAGAAGTAGTTGACCTGGAGGGCGTGTATAAAAATTGTTCTTCTAACAGATCCCTTTTACTTGTATTCAACCAAAAAAAGTAGTTCCCTTTTACTTGACAATCCAAACGTTTCCAATTTATTGTCTGATTCTTTTTTTTTTTTTGTCAGGTAGCCCAGTGGCTAGAATTCACCTTATATTATAAGGTGAATAAGTGGGGTGTCCGGGGTTCGAACCCCGGCCCCTACATATAACAATGCATTGTCCTACCAACTGAGCTATGCTCACGGGACATTTATTGTCTGATTCTAGTCGGTGCATTATGTGCTTCTAGTTGGTGATAGACATATTCAAGAAATTTCATGAAAGAAAAATTAACAAGGAAACTAGATTAATGGAAATTGACATGAAGGTATTTGGAAGAAGAAGAAAAAAAGGAGTTGCTAATAGAAACCCCTTAACAATTCTAGAACTAAGCAAACAAATGACGAATGGGACAAGATTTGTTTTCCTGCATCCCAACATCAGTTAATTGGCGTTTGCTATCCAAAAAAATTATTTACTAACGGCAGTTAACTACTGCCGGAGGAGGGTTTTAAGACGCGAGAGAGCAATTTTAGCAGCTTGAAGAGCAATTATCATGGGACAATGGGTATATCCTTTATTATAAAAGCTCAACTTGATGTGCTGGCACTTTTGCCCTAATCTCTCCCTAATTTCCCTCCTAATCCCATATTAATTGCTAGCCTAAACTGCCAACCACCCCAGTTAATCTCAGCCGTTGTATACCTGACGTTTCATATACATACATCAACCAATCAGCTCTTTTGCTTTTACTATTCTCCCTCTATATTTCCAAAGACTCTTCTGGAATACCAATCCCCAACACAACTTCTCTCCCTTCCCCTTCGGTTCGAAATTCAAACCCTCTGTTTGAAGCTGCGGTTTCCTCTTCTCCATTAATCTATACAAACATAGTATTTTAAGTAGCTGTTCATATTTCCAGGTATCCGAATCCATCACTCCTACTCTCTTATGCATACAGATTTATTGAAAACATCTCAAAAATATTTGTTCCATAGTCAAATCTTTCTCATCTCATCTCTATGACAAATGGGTTTGATTTCTCTTCGTAAAAAAAATCCAATCAGCTTCTCTCTGGTTCGTTCATAGTGAACCCAATCGCCATCTCCAAACGGTAAGCCCTTCTCTCTTACACGAATCCTATTTTGCGGTTTTCATTTTCTTTACAAATTAGTTGTTCTTTTTCTACCATAGAAAAAAGACATTGTTGCATTGTTTCATTCTTGAGAAATGTAATGGTTACAACTTCATATTGGCTACTTATTTGTTTGGTTAGTGATTATTTGCATGTTTTCTTGGATGGGGAGGATGGACATCTATATAAGGAAGCTTCAAAATGACCAGTTTTTTTAACCTAAATGTATGTTATATTTGATGTCTATTTTATTTACTGTTTTTTGTTTTTACATCTGTGAAACTAAGTAGCGCCATGGCTTACGTTGCTTTATGTTTGAAATCATTGTTTTAGTTTTTATTGTTCTCAGGTTTTAGGGTAAATGTCAATGAAAAATATTGTCCTTCTCTTAAGTATTCTTACATTATTGATATGTAGTTAGTACTATTTCAGGCTTCATAAGAAGATAATAATCAGTCTACATCTGCCTTAATTTTAGGGTGTGCTACAATTGTTAATGGCTTTGAATTTTGATTGTTTTTCAACTCTGTTAAGTTTAATTTAAAATTAAATTAGTTGTGATACCTTAAATTTTTTAGAGTTGTTTTTGAAAATCTATATAATTAAAGTTTGGCATGTACGCATTCGTTTTGTCCACTTTATTTTTGAGAGCTGTTTGGTGCTGAGTTTTTGAGAGCTGTTTTTTGTGCCCCACTCTCGGCCTGTCCTGTGTGTTTTTTGCTAATTTTCTTCTGGTTTGTAAGGAAGGTTTGTTATTTACAAGGATGTCCAGTTTTTGGTGTGCTGCTTTATTCATTTAGGGGCTGAGAATGAGGAAACTGCTATTGGAGTTGACATACATGCGCACAAACTTTAATTGGAACAGCTACATCTTATGTAAGAGGAACTTTCATTTGGTTTGAGCATTAAAGATTACTTTAATTGACTGCATTCTCTCTGAGCAAACAATGCATACATGCCTCAGATTTAAATAAAGCAGTCTGGCTATTGTTTAATAGAGATTCTATAAATTAACTGAAAGTTGAAATTAACTTGATAGTTGAAGAGTTTCTTCCTTTGTTTGAATTTCAATTTATTCTCCTTTCTATTTATCATCTCCTCACAAGGGGTTGTTTGTATGTGGGCAACAGATGCCTATGGAAACCTATAATCTTACTATATTATAATAAGTTTTAGTTTTATATTTATAACATTAGCTCTTGAGTAGTTTTTGCTGTAAGTTAATTGAGATACATGGTAAAAGAAGTGTGGTGAAATTGGCAAACCAGATTTATGATTTGCTATAAGGCTGATAGTACATGTTTTGTCATCACCCATAAGTTTTGATTAAACTATACCTATAAATGTTGTGATTATGTTTAACAAATTTAATTTTTAATAAATGTAATTGTACTCTTTTAAGATCATGTATATTTTGAATTCTATTTACTAATAACAACTTCAGTGTTGTATGTTAAGGTTCAATTTATTTAGCATGATTAGTTAGGAGAAGAAAAACAAGGAAAGAAAATGAACCATTTGATAACATGATTACTAACAGATTGATAAACCATTCATGATTTCACCTATGGGGCTTTGTTTCGATTGTCATATTTCATTTCTGTTTGTATCTGATCATATTTAACTTCTTTTACAGCTGATGCTTATACTTATCTTTGTGTCTGCAGGACCTTAATCAATGGAAAGTGA

Protein sequence

>MS.gene01574.t1

MENKATILMHKYEVGRMLGQGTFAKVYHARNLKTGQNVAIKVFDKAMIMRVGLKEQIKREISVMRLVRHPNIVEFYEVMASKTKIYFAMEQVKGGELFHKVSRGKLREDMARKYFQQLIAAVDHCHRRGIYHRDLKPENLLLDENGDLKVADFGLSALLESKKKDDLLHTTCGTPAYVAPEIIKKKGYDGAKADIWSCGVILFVLLAGFLPFNDRNLMEMYKKIANADFKFPQWFHSDVKRLLYRILDPDPRTRITINKIMQNSWFRKGYKQIEGPHLSPTHGDISDVHNAFDDLSPLSSPMSVKDEQCPMKLYCFNAFDIISLSSGLDLSGLFEKDTSEGQHARFATKRPPSTIVSKLEETAQSVGRFKVMKQNGIVRVEGFETGINEQLTIDTEIFELLSGSFIVNPIAISKRTLINGK