Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015843.t1 | XP_013447302.1 | 98.5 | 332 | 4 | 1 | 1 | 332 | 1 | 331 | 1.10E-170 | 609.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015843.t1 | Q9M0F8 | 84.9 | 225 | 29 | 4 | 3 | 224 | 4 | 226 | 9.0e-108 | 392.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015843.t1 | A0A072TUY2 | 98.5 | 332 | 4 | 1 | 1 | 332 | 1 | 331 | 8.2e-171 | 609.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015843.t1 | TF | NAC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015843.t1 | MTR_8g102240 | 97.951 | 488 | 7 | 2 | 1 | 488 | 1 | 485 | 0.0 | 987 |
| MS.gene015843.t1 | MTR_8g102240 | 97.746 | 488 | 7 | 2 | 1 | 488 | 1 | 484 | 0.0 | 984 |
| MS.gene015843.t1 | MTR_4g088245 | 69.484 | 213 | 52 | 5 | 30 | 238 | 47 | 250 | 2.56e-97 | 296 |
| MS.gene015843.t1 | MTR_4g078875 | 73.846 | 195 | 40 | 4 | 30 | 219 | 26 | 214 | 8.00e-95 | 289 |
| MS.gene015843.t1 | MTR_2g014680 | 63.182 | 220 | 67 | 5 | 3 | 218 | 8 | 217 | 1.02e-89 | 276 |
| MS.gene015843.t1 | MTR_2g090735 | 73.737 | 198 | 40 | 4 | 30 | 222 | 27 | 217 | 8.71e-89 | 273 |
| MS.gene015843.t1 | MTR_8g069160 | 71.739 | 184 | 41 | 4 | 30 | 209 | 47 | 223 | 4.32e-87 | 268 |
| MS.gene015843.t1 | MTR_1g093680 | 53.394 | 221 | 92 | 5 | 27 | 245 | 36 | 247 | 7.62e-75 | 244 |
| MS.gene015843.t1 | MTR_5g053430 | 59.162 | 191 | 68 | 3 | 27 | 215 | 36 | 218 | 3.96e-73 | 238 |
| MS.gene015843.t1 | MTR_5g053430 | 55.189 | 212 | 83 | 4 | 27 | 236 | 36 | 237 | 5.41e-73 | 238 |
| MS.gene015843.t1 | MTR_7g033320 | 53.646 | 192 | 80 | 4 | 25 | 213 | 30 | 215 | 5.09e-62 | 210 |
| MS.gene015843.t1 | MTR_1g093670 | 47.059 | 204 | 85 | 5 | 43 | 246 | 19 | 199 | 1.50e-51 | 178 |
| MS.gene015843.t1 | MTR_6g084430 | 29.680 | 219 | 117 | 9 | 47 | 256 | 5 | 195 | 1.89e-13 | 71.6 |
| MS.gene015843.t1 | MTR_8g059170 | 32.895 | 152 | 76 | 5 | 45 | 194 | 12 | 139 | 3.20e-13 | 71.2 |
| MS.gene015843.t1 | MTR_1g008740 | 30.994 | 171 | 90 | 6 | 47 | 211 | 13 | 161 | 3.61e-13 | 71.2 |
| MS.gene015843.t1 | MTR_1g008740 | 30.994 | 171 | 90 | 6 | 47 | 211 | 27 | 175 | 4.35e-13 | 70.9 |
| MS.gene015843.t1 | MTR_2g079990 | 30.994 | 171 | 91 | 6 | 45 | 212 | 14 | 160 | 1.15e-12 | 69.7 |
| MS.gene015843.t1 | MTR_3g070030 | 30.682 | 176 | 89 | 8 | 45 | 211 | 17 | 168 | 1.42e-12 | 69.3 |
| MS.gene015843.t1 | MTR_3g088110 | 34.416 | 154 | 72 | 8 | 45 | 195 | 5 | 132 | 1.72e-12 | 68.6 |
| MS.gene015843.t1 | MTR_2g079990 | 32.895 | 152 | 76 | 5 | 45 | 194 | 14 | 141 | 2.50e-12 | 68.6 |
| MS.gene015843.t1 | MTR_7g085260 | 30.851 | 188 | 94 | 8 | 38 | 213 | 8 | 171 | 2.51e-12 | 68.9 |
| MS.gene015843.t1 | MTR_2g080010 | 32.258 | 155 | 79 | 7 | 47 | 198 | 15 | 146 | 4.79e-12 | 67.8 |
| MS.gene015843.t1 | MTR_4g089135 | 34.437 | 151 | 73 | 8 | 47 | 194 | 15 | 142 | 5.74e-12 | 67.4 |
| MS.gene015843.t1 | MTR_3g109340 | 31.746 | 189 | 94 | 9 | 47 | 225 | 22 | 185 | 1.00e-11 | 66.6 |
| MS.gene015843.t1 | MTR_4g078895 | 68.182 | 44 | 13 | 1 | 46 | 89 | 36 | 78 | 1.10e-11 | 60.8 |
| MS.gene015843.t1 | MTR_4g108760 | 30.286 | 175 | 90 | 7 | 45 | 211 | 15 | 165 | 1.65e-11 | 66.2 |
| MS.gene015843.t1 | MTR_7g100990 | 31.788 | 151 | 77 | 6 | 47 | 194 | 11 | 138 | 2.02e-11 | 65.5 |
| MS.gene015843.t1 | MTR_3g435150 | 31.638 | 177 | 89 | 7 | 43 | 211 | 12 | 164 | 3.18e-11 | 64.7 |
| MS.gene015843.t1 | MTR_2157s0010 | 31.818 | 154 | 78 | 6 | 47 | 196 | 8 | 138 | 3.77e-11 | 63.9 |
| MS.gene015843.t1 | MTR_7g005280 | 28.571 | 203 | 109 | 11 | 47 | 243 | 15 | 187 | 5.25e-11 | 63.5 |
| MS.gene015843.t1 | MTR_2g062730 | 32.000 | 175 | 87 | 9 | 45 | 211 | 8 | 158 | 6.89e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015843.t1 | AT4G29230 | 60.236 | 508 | 163 | 17 | 3 | 486 | 4 | 496 | 9.60e-180 | 513 |
| MS.gene015843.t1 | AT4G29230 | 60.118 | 509 | 163 | 18 | 3 | 486 | 4 | 497 | 5.43e-178 | 509 |
| MS.gene015843.t1 | AT4G29230 | 60.739 | 433 | 141 | 13 | 3 | 421 | 4 | 421 | 1.58e-152 | 442 |
| MS.gene015843.t1 | AT5G56620 | 49.068 | 483 | 145 | 15 | 10 | 475 | 4 | 402 | 3.40e-135 | 396 |
| MS.gene015843.t1 | AT5G56620 | 49.068 | 483 | 145 | 15 | 10 | 475 | 4 | 402 | 3.75e-135 | 397 |
| MS.gene015843.t1 | AT5G56620 | 51.707 | 410 | 117 | 11 | 10 | 400 | 4 | 351 | 4.75e-122 | 362 |
| MS.gene015843.t1 | AT4G28500 | 66.514 | 218 | 63 | 3 | 9 | 222 | 17 | 228 | 4.89e-97 | 295 |
| MS.gene015843.t1 | AT1G28470 | 67.513 | 197 | 50 | 3 | 30 | 219 | 53 | 242 | 3.04e-89 | 275 |
| MS.gene015843.t1 | AT1G25580 | 58.247 | 194 | 65 | 5 | 27 | 218 | 36 | 215 | 1.25e-68 | 226 |
| MS.gene015843.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 3.20e-58 | 196 |
| MS.gene015843.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 3.82e-58 | 196 |
| MS.gene015843.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 3.97e-58 | 194 |
| MS.gene015843.t1 | AT5G14490 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 5.57e-58 | 196 |
| MS.gene015843.t1 | AT3G01600 | 50.510 | 196 | 87 | 5 | 23 | 215 | 28 | 216 | 6.06e-55 | 188 |
| MS.gene015843.t1 | AT1G01720 | 35.065 | 154 | 71 | 8 | 45 | 195 | 5 | 132 | 5.75e-14 | 72.8 |
| MS.gene015843.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.17e-12 | 70.5 |
| MS.gene015843.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.17e-12 | 70.5 |
| MS.gene015843.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.17e-12 | 70.5 |
| MS.gene015843.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.17e-12 | 70.5 |
| MS.gene015843.t1 | AT5G09330 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.17e-12 | 70.5 |
| MS.gene015843.t1 | AT3G15500 | 31.579 | 152 | 78 | 5 | 45 | 194 | 12 | 139 | 3.61e-12 | 67.8 |
| MS.gene015843.t1 | AT1G02220 | 30.872 | 149 | 76 | 5 | 48 | 193 | 4 | 128 | 3.72e-12 | 68.6 |
| MS.gene015843.t1 | AT1G33060 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 5.51e-12 | 68.6 |
| MS.gene015843.t1 | AT1G33060 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 5.84e-12 | 68.6 |
| MS.gene015843.t1 | AT1G52890 | 30.921 | 152 | 79 | 5 | 45 | 194 | 12 | 139 | 1.24e-11 | 66.2 |
| MS.gene015843.t1 | AT3G29035 | 30.682 | 176 | 88 | 7 | 45 | 211 | 22 | 172 | 2.25e-11 | 65.5 |
| MS.gene015843.t1 | AT4G27410 | 27.919 | 197 | 95 | 7 | 45 | 218 | 12 | 184 | 2.62e-11 | 65.1 |
| MS.gene015843.t1 | AT5G39610 | 30.222 | 225 | 117 | 10 | 45 | 260 | 18 | 211 | 3.04e-11 | 64.7 |
Find 103 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCGAAATGATCAGATTTA+AGG | 0.202690 | 4.3:+3223189 | None:intergenic |
| CTTCCATTGATATTATAATT+AGG | 0.223614 | 4.3:+3223341 | None:intergenic |
| GCATTTGTGAAGCTTGTTAA+AGG | 0.254170 | 4.3:+3223227 | None:intergenic |
| AGCTTCTTGTTGGTTTCTAA+TGG | 0.256606 | 4.3:+3220170 | None:intergenic |
| ACCAGACCTGTTATGGTTAA+TGG | 0.262903 | 4.3:-3223611 | MS.gene015843:CDS |
| CCTGTTGTATATGCCTTTGA+TGG | 0.263920 | 4.3:+3223722 | None:intergenic |
| GGTTGAAATACTCTTCTTAC+TGG | 0.281746 | 4.3:-3220143 | MS.gene015843:CDS |
| TGTTTACCATTAACCATAAC+AGG | 0.301271 | 4.3:+3223605 | None:intergenic |
| CACCTTAAATCTGATCATTT+CGG | 0.305151 | 4.3:-3223191 | MS.gene015843:CDS |
| GATTGGAAGGCCTACTTATA+TGG | 0.307907 | 4.3:+3222218 | None:intergenic |
| TGGTTTGGAGGAAGTCATTA+TGG | 0.313328 | 4.3:-3220922 | MS.gene015843:CDS |
| CATCACCCAATTTGTCTTCT+CGG | 0.314134 | 4.3:+3223526 | None:intergenic |
| CACAGCCAAGACAGTGTAAT+TGG | 0.340413 | 4.3:-3223430 | MS.gene015843:CDS |
| ATGGTTAATGGTAAACAAAA+AGG | 0.341742 | 4.3:-3223599 | MS.gene015843:CDS |
| TATATGCCTTTGATGGTCTA+TGG | 0.358040 | 4.3:+3223729 | None:intergenic |
| GAAAACCCGAGAAGACAAAT+TGG | 0.361472 | 4.3:-3223532 | MS.gene015843:CDS |
| TCAACCACTCAGCTTCTTGT+TGG | 0.371776 | 4.3:+3220160 | None:intergenic |
| TGGAAGGTCTGCGTCTGGTT+TGG | 0.383750 | 4.3:-3220937 | MS.gene015843:CDS |
| CATGTTCTTTGACTCAACTT+TGG | 0.392039 | 4.3:+3224146 | None:intergenic |
| GGTTTGGAGGAAGTCATTAT+GGG | 0.397618 | 4.3:-3220921 | MS.gene015843:CDS |
| TCCACAGCGAGGGCAGTGTT+TGG | 0.404918 | 4.3:+3224505 | None:intergenic |
| TCAATCAATTCTTGATCTGT+TGG | 0.405063 | 4.3:+3224180 | None:intergenic |
| TGGTAAGACCAGACCTGTTA+TGG | 0.407089 | 4.3:-3223618 | MS.gene015843:CDS |
| GGGAGGTGGAGAGATGATAG+TGG | 0.407529 | 4.3:+3222189 | None:intergenic |
| GTGAAGCTTGTTAAAGGACT+AGG | 0.412943 | 4.3:+3223233 | None:intergenic |
| ATCACCCAATTTGTCTTCTC+GGG | 0.413577 | 4.3:+3223527 | None:intergenic |
| CTTCTTCATGTTGTCCAAGA+TGG | 0.416813 | 4.3:+3223495 | None:intergenic |
| TGGAGAGATGATAGTGGAGA+TGG | 0.419657 | 4.3:+3222195 | None:intergenic |
| GATGTGTGATGGAGGGGAGG+TGG | 0.419705 | 4.3:+3222175 | None:intergenic |
| GGAAGAAGAGATAGTGGAAG+TGG | 0.419947 | 4.3:-3223323 | MS.gene015843:CDS |
| AATCTGAGTAACAATTTCCT+TGG | 0.423878 | 4.3:+3223289 | None:intergenic |
| GAATTCATTCTCACTATTGA+AGG | 0.424881 | 4.3:-3224099 | MS.gene015843:CDS |
| ATCAATGGAAGAAGAGATAG+TGG | 0.430228 | 4.3:-3223329 | MS.gene015843:CDS |
| TCCTTGTAAGTCACACTCTT+CGG | 0.430646 | 4.3:+3223673 | None:intergenic |
| GAAACAAGATGGCACAAAAC+TGG | 0.433929 | 4.3:-3223638 | MS.gene015843:CDS |
| AACAAGCTTCACAAATGCCT+TGG | 0.435738 | 4.3:-3223222 | MS.gene015843:CDS |
| GATGATAGTGGAGATGGGAT+TGG | 0.442110 | 4.3:+3222201 | None:intergenic |
| ATCAGGAGGCTCATGTGATC+AGG | 0.445075 | 4.3:-3222371 | MS.gene015843:CDS |
| CCATCAAAGGCATATACAAC+AGG | 0.455100 | 4.3:-3223722 | MS.gene015843:CDS |
| ACCATTAACCATAACAGGTC+TGG | 0.456313 | 4.3:+3223610 | None:intergenic |
| CTATCATTATAGGTTGGAAT+AGG | 0.457175 | 4.3:-3222424 | MS.gene015843:intron |
| GAACCTAATTATAATATCAA+TGG | 0.462340 | 4.3:-3223344 | MS.gene015843:CDS |
| GGATCAAATTTCACTCCTGC+TGG | 0.469166 | 4.3:+3224201 | None:intergenic |
| TCAGACCAATTACACTGTCT+TGG | 0.476749 | 4.3:+3223425 | None:intergenic |
| GATGAAATGTCTGCTGTTGT+TGG | 0.479390 | 4.3:-3223260 | MS.gene015843:CDS |
| CTCACTATTGAAGGAGAAGA+TGG | 0.486078 | 4.3:-3224090 | MS.gene015843:CDS |
| AAGGTCTGCGTCTGGTTTGG+AGG | 0.488566 | 4.3:-3220934 | MS.gene015843:CDS |
| CTGCGTTTGCACTAATCTGC+TGG | 0.490246 | 4.3:+3222245 | None:intergenic |
| ACAAGAGAAATGCAAGCATC+AGG | 0.490268 | 4.3:-3222388 | MS.gene015843:CDS |
| GTGGATGTGTGATGGAGGGG+AGG | 0.491180 | 4.3:+3222172 | None:intergenic |
| TGATGGTGGATGTGTGATGG+AGG | 0.493985 | 4.3:+3222167 | None:intergenic |
| CTTGTTCTCTACACCAACTT+CGG | 0.499621 | 4.3:-3223563 | MS.gene015843:CDS |
| GGAGAGATGATAGTGGAGAT+GGG | 0.502154 | 4.3:+3222196 | None:intergenic |
| AGTGTTTGGATCCACACAAC+TGG | 0.507034 | 4.3:+3224519 | None:intergenic |
| CATTCTAATCATGATGATGA+TGG | 0.514227 | 4.3:+3220097 | None:intergenic |
| TGAAGCTTGTTAAAGGACTA+GGG | 0.515511 | 4.3:+3223234 | None:intergenic |
| GATGGTGGATGTGTGATGGA+GGG | 0.519141 | 4.3:+3222168 | None:intergenic |
| GGTGGTGGAAGGTCTGCGTC+TGG | 0.526615 | 4.3:-3220942 | MS.gene015843:CDS |
| TGTGACTTACAAGGAAGTAC+AGG | 0.531187 | 4.3:-3223665 | MS.gene015843:CDS |
| AGAATGAATTCATCAATCAA+AGG | 0.532417 | 4.3:+3224111 | None:intergenic |
| AAAACCCGAGAAGACAAATT+GGG | 0.533154 | 4.3:-3223531 | MS.gene015843:CDS |
| CATGGTAAGAATTGTCATCA+AGG | 0.534349 | 4.3:+3222143 | None:intergenic |
| ATGGTGGATGTGTGATGGAG+GGG | 0.535220 | 4.3:+3222169 | None:intergenic |
| GTGATGCATCAATACCATCT+TGG | 0.536833 | 4.3:-3223509 | MS.gene015843:CDS |
| TTTAAGGTGTTGAATATCCA+AGG | 0.540367 | 4.3:+3223205 | None:intergenic |
| CAGCAACAACATCATAAACT+AGG | 0.542717 | 4.3:-3220963 | MS.gene015843:CDS |
| AAGTGGAAGTTCTTCTTCCA+AGG | 0.544042 | 4.3:-3223306 | MS.gene015843:CDS |
| ACAACAACTGGTGAAGGAAG+TGG | 0.551888 | 4.3:-3223371 | MS.gene015843:CDS |
| CAACATGAAGAAGAGAAAGA+AGG | 0.555164 | 4.3:-3223485 | MS.gene015843:CDS |
| AGAATTGTCATCAAGGATGA+TGG | 0.555788 | 4.3:+3222150 | None:intergenic |
| GAATGAATTCATCAATCAAA+GGG | 0.558039 | 4.3:+3224112 | None:intergenic |
| GGATGATGGTGGATGTGTGA+TGG | 0.559886 | 4.3:+3222164 | None:intergenic |
| ACGCAGCTTTCCATATAAGT+AGG | 0.560422 | 4.3:-3222228 | MS.gene015843:CDS |
| TGTGGACACAAATTTGATCA+AGG | 0.561466 | 4.3:-3224488 | MS.gene015843:CDS |
| TTATAGGTTGGAATAGGAGA+AGG | 0.569160 | 4.3:-3222418 | MS.gene015843:intron |
| CAACATCATAAACTAGGTGG+TGG | 0.571157 | 4.3:-3220957 | MS.gene015843:CDS |
| ACCGAAGAGTGTGACTTACA+AGG | 0.573730 | 4.3:-3223674 | MS.gene015843:CDS |
| TGATCTCATAGATTCTAAGC+TGG | 0.574339 | 4.3:-3224549 | MS.gene015843:CDS |
| CAAATTTGTGTCCACAGCGA+GGG | 0.577429 | 4.3:+3224495 | None:intergenic |
| CAAATTTGATCAAGGCAAGC+CGG | 0.585518 | 4.3:-3224480 | MS.gene015843:intron |
| ATCATAAACTAGGTGGTGGA+AGG | 0.591383 | 4.3:-3220953 | MS.gene015843:CDS |
| TCCAAACACTGCCCTCGCTG+TGG | 0.598125 | 4.3:-3224506 | MS.gene015843:CDS |
| CTGGAAGAGCACCAGTTGTG+TGG | 0.599801 | 4.3:-3224530 | MS.gene015843:CDS |
| ATACAACAGGAACACGAAAG+AGG | 0.605890 | 4.3:-3223709 | MS.gene015843:CDS |
| GTTTGGAGGAAGTCATTATG+GGG | 0.614581 | 4.3:-3220920 | MS.gene015843:CDS |
| TGGAACTAACAGGATTGGCT+AGG | 0.614683 | 4.3:-3224228 | MS.gene015843:intron |
| ATAGTGGAGATGGGATTGGA+AGG | 0.617201 | 4.3:+3222205 | None:intergenic |
| TTGTTGTCATGAGGGTCGAC+TGG | 0.619843 | 4.3:+3220120 | None:intergenic |
| ACAACAACAACAACTGGTGA+AGG | 0.627737 | 4.3:-3223377 | MS.gene015843:CDS |
| TCAAATTTGTGTCCACAGCG+AGG | 0.631442 | 4.3:+3224494 | None:intergenic |
| GATTGGCTAGGTCTACCAGC+AGG | 0.635385 | 4.3:-3224216 | MS.gene015843:CDS |
| TGATGATGGTTGTTGTCATG+AGG | 0.638720 | 4.3:+3220111 | None:intergenic |
| AGGAGGCTCATGTGATCAGG+AGG | 0.640907 | 4.3:-3222368 | MS.gene015843:CDS |
| GATGATGGTTGTTGTCATGA+GGG | 0.647114 | 4.3:+3220112 | None:intergenic |
| AGAGAAATGCAAGCATCAGG+AGG | 0.653970 | 4.3:-3222385 | MS.gene015843:CDS |
| GTACAGGAGGAGAAACAAGA+TGG | 0.661050 | 4.3:-3223649 | MS.gene015843:CDS |
| ACAACTGGTGAAGGAAGTGG+TGG | 0.665064 | 4.3:-3223368 | MS.gene015843:CDS |
| GACTTACAAGGAAGTACAGG+AGG | 0.666650 | 4.3:-3223662 | MS.gene015843:CDS |
| ATTGTCATCAAGGATGATGG+TGG | 0.672021 | 4.3:+3222153 | None:intergenic |
| AACGTCGTCTGATATCAAAG+AGG | 0.681906 | 4.3:-3220889 | MS.gene015843:intron |
| GAAACCAACAAGAAGCTGAG+TGG | 0.685593 | 4.3:-3220164 | MS.gene015843:CDS |
| GGAGCATGATTGTTGAAACA+TGG | 0.690838 | 4.3:+3222125 | None:intergenic |
| CAACAACATCATAAACTAGG+TGG | 0.704443 | 4.3:-3220960 | MS.gene015843:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAGCAATTAAA+GGG | + | chr4.3:3220423-3220442 | None:intergenic | 10.0% |
| !! | AATTAATTAATTAATTAACC+TGG | + | chr4.3:3220649-3220668 | None:intergenic | 10.0% |
| !! | TAAAAATAAAAAGCAATTAA+AGG | + | chr4.3:3220424-3220443 | None:intergenic | 10.0% |
| !!! | AAAAAAATTATCTCTAATTT+TGG | + | chr4.3:3221794-3221813 | None:intergenic | 10.0% |
| !!! | ATTTTTAATTTGAATTTCAA+TGG | - | chr4.3:3220437-3220456 | MS.gene015843:intron | 10.0% |
| !! | AAAAAAAAATTGTGTTTGTT+CGG | - | chr4.3:3223341-3223360 | MS.gene015843:CDS | 15.0% |
| !! | ACTAGTACATTAAATAAAAT+CGG | + | chr4.3:3223117-3223136 | None:intergenic | 15.0% |
| !! | AGTCTTTAGTTATAAAAAAT+AGG | + | chr4.3:3223945-3223964 | None:intergenic | 15.0% |
| !! | ATAATTTGAAAAAATGAAAG+TGG | + | chr4.3:3221655-3221674 | None:intergenic | 15.0% |
| !! | ATATTTGATACTATCATTAT+AGG | - | chr4.3:3222251-3222270 | MS.gene015843:CDS | 15.0% |
| !! | ATTAATTTAAATTCTCAGTT+AGG | - | chr4.3:3220722-3220741 | MS.gene015843:intron | 15.0% |
| !! | TTACCAATAAAAAATATTAG+AGG | + | chr4.3:3221817-3221836 | None:intergenic | 15.0% |
| !! | TTATATGAAATTTCAACATT+CGG | - | chr4.3:3221955-3221974 | MS.gene015843:intron | 15.0% |
| !!! | AATAATTTTCAATTTTGTCT+TGG | - | chr4.3:3222836-3222855 | MS.gene015843:intron | 15.0% |
| !!! | TAAATTCATTGATTTATACT+AGG | - | chr4.3:3223537-3223556 | MS.gene015843:CDS | 15.0% |
| !!! | TTTCCTCTAATATTTTTTAT+TGG | - | chr4.3:3221811-3221830 | MS.gene015843:intron | 15.0% |
| !! | AACTTTAATAATTTGACTCA+CGG | + | chr4.3:3222939-3222958 | None:intergenic | 20.0% |
| !! | AATAAAGATGAAGATGAAAA+TGG | + | chr4.3:3223973-3223992 | None:intergenic | 20.0% |
| !! | ACCTATTTATTTATTTATCG+TGG | - | chr4.3:3223037-3223056 | MS.gene015843:intron | 20.0% |
| !! | CATGAAAAGAAGATTAATTA+GGG | + | chr4.3:3224463-3224482 | None:intergenic | 20.0% |
| !! | CTAGTACATTAAATAAAATC+GGG | + | chr4.3:3223116-3223135 | None:intergenic | 20.0% |
| !! | CTTCCATTGATATTATAATT+AGG | + | chr4.3:3221347-3221366 | None:intergenic | 20.0% |
| !! | GAAAAAAAAGAAGATGAATA+TGG | + | chr4.3:3224063-3224082 | None:intergenic | 20.0% |
| !! | GAACCTAATTATAATATCAA+TGG | - | chr4.3:3221341-3221360 | MS.gene015843:intron | 20.0% |
| !! | TAGTTCTCTTAAGTTAATAA+AGG | + | chr4.3:3223225-3223244 | None:intergenic | 20.0% |
| !! | TCATGAAAAGAAGATTAATT+AGG | + | chr4.3:3224464-3224483 | None:intergenic | 20.0% |
| !!! | CAAACACAATTTTTTTTTAC+TGG | + | chr4.3:3223339-3223358 | None:intergenic | 20.0% |
| !!! | TAGATTTTTAAAAGAGAATG+AGG | - | chr4.3:3223010-3223029 | MS.gene015843:intron | 20.0% |
| !!! | TTGTGAATTTTAACAAATCA+TGG | + | chr4.3:3223306-3223325 | None:intergenic | 20.0% |
| ! | AAAGAACATGCATGAAATTA+AGG | - | chr4.3:3222010-3222029 | MS.gene015843:intron | 25.0% |
| ! | AAGAACATGCATGAAATTAA+GGG | - | chr4.3:3222011-3222030 | MS.gene015843:intron | 25.0% |
| ! | AATATAGCATAGCATTTGAT+TGG | - | chr4.3:3221851-3221870 | MS.gene015843:intron | 25.0% |
| ! | ACATGAAATGAGTTTAATGA+AGG | + | chr4.3:3221739-3221758 | None:intergenic | 25.0% |
| ! | ACTATGGTGACATAATTTAA+TGG | - | chr4.3:3220272-3220291 | MS.gene015843:intron | 25.0% |
| ! | AGAATGAATTCATCAATCAA+AGG | + | chr4.3:3220577-3220596 | None:intergenic | 25.0% |
| ! | ATGGTTAATGGTAAACAAAA+AGG | - | chr4.3:3221086-3221105 | MS.gene015843:intron | 25.0% |
| ! | ATGTATAATATGTATCCACA+TGG | - | chr4.3:3223687-3223706 | MS.gene015843:CDS | 25.0% |
| ! | GAATGAATTCATCAATCAAA+GGG | + | chr4.3:3220576-3220595 | None:intergenic | 25.0% |
| ! | GCCACGATAAATAAATAAAT+AGG | + | chr4.3:3223041-3223060 | None:intergenic | 25.0% |
| ! | TAAAAGTTCTATCACGATTT+AGG | + | chr4.3:3223199-3223218 | None:intergenic | 25.0% |
| ! | TCAAACACTTACAAATACTT+TGG | + | chr4.3:3221706-3221725 | None:intergenic | 25.0% |
| ! | TCAATATGTTGAACCAAAAT+GGG | - | chr4.3:3223485-3223504 | MS.gene015843:CDS | 25.0% |
| ! | TTGAATGTAACTATGTATGT+CGG | + | chr4.3:3221632-3221651 | None:intergenic | 25.0% |
| ! | TTGATACTATCATTATAGGT+TGG | - | chr4.3:3222255-3222274 | MS.gene015843:CDS | 25.0% |
| !! | AACATTTTCTTTTCTTAGCT+AGG | + | chr4.3:3222170-3222189 | None:intergenic | 25.0% |
| !! | CCAACAAAATGAAAATTTTC+AGG | - | chr4.3:3222581-3222600 | MS.gene015843:intron | 25.0% |
| !! | CCTGAAAATTTTCATTTTGT+TGG | + | chr4.3:3222584-3222603 | None:intergenic | 25.0% |
| !! | GTCCATACAAATTAATTTTG+CGG | + | chr4.3:3222092-3222111 | None:intergenic | 25.0% |
| !! | TATAATCCCTTTTCTCATTT+AGG | - | chr4.3:3220299-3220318 | MS.gene015843:intron | 25.0% |
| !!! | ATTTTTTACAAACAAGACCA+AGG | + | chr4.3:3224302-3224321 | None:intergenic | 25.0% |
| !!! | TAGGAAAGGTTTTATATATG+TGG | - | chr4.3:3223556-3223575 | MS.gene015843:CDS | 25.0% |
| !!! | TCATTGATTTATACTAGGAA+AGG | - | chr4.3:3223542-3223561 | MS.gene015843:CDS | 25.0% |
| !!! | TTAACTTGGTGCAAATTAAT+GGG | - | chr4.3:3223458-3223477 | MS.gene015843:CDS | 25.0% |
| !!! | TTATGTCACCATAGTTTTAA+AGG | + | chr4.3:3220267-3220286 | None:intergenic | 25.0% |
| !!! | TTTTTTTTACTGGAAAGAAC+AGG | + | chr4.3:3223329-3223348 | None:intergenic | 25.0% |
| AAGAAATAAACTTGAGCAAG+AGG | - | chr4.3:3220829-3220848 | MS.gene015843:intron | 30.0% | |
| AATCTGAGTAACAATTTCCT+TGG | + | chr4.3:3221399-3221418 | None:intergenic | 30.0% | |
| AGAAATAAACTTGAGCAAGA+GGG | - | chr4.3:3220830-3220849 | MS.gene015843:intron | 30.0% | |
| ATAGCTACCTAAATGAGAAA+AGG | + | chr4.3:3220309-3220328 | None:intergenic | 30.0% | |
| ATGAAATTTCAACATTCGGT+TGG | - | chr4.3:3221959-3221978 | MS.gene015843:intron | 30.0% | |
| ATGCATGAAATTAAGGGTTA+AGG | - | chr4.3:3222017-3222036 | MS.gene015843:intron | 30.0% | |
| ATTTCGAAAAAGCTATGATG+AGG | - | chr4.3:3221526-3221545 | MS.gene015843:intron | 30.0% | |
| CAAAGTTAGGTGACTTAATT+AGG | + | chr4.3:3220881-3220900 | None:intergenic | 30.0% | |
| CAATATGTTGAACCAAAATG+GGG | - | chr4.3:3223486-3223505 | MS.gene015843:CDS | 30.0% | |
| CACCTTAAATCTGATCATTT+CGG | - | chr4.3:3221494-3221513 | MS.gene015843:intron | 30.0% | |
| CTCAATATGTTGAACCAAAA+TGG | - | chr4.3:3223484-3223503 | MS.gene015843:CDS | 30.0% | |
| GAATTCATTCTCACTATTGA+AGG | - | chr4.3:3220586-3220605 | MS.gene015843:intron | 30.0% | |
| GATATTCATTTCAAACTCTG+AGG | + | chr4.3:3224407-3224426 | None:intergenic | 30.0% | |
| TAAAGGGAGAGAAATCAATA+AGG | + | chr4.3:3220407-3220426 | None:intergenic | 30.0% | |
| TAGCTACCTAAATGAGAAAA+GGG | + | chr4.3:3220308-3220327 | None:intergenic | 30.0% | |
| TCAATCAATTCTTGATCTGT+TGG | + | chr4.3:3220508-3220527 | None:intergenic | 30.0% | |
| TCATTGCCAAAATCAAAGTT+AGG | + | chr4.3:3220894-3220913 | None:intergenic | 30.0% | |
| TGAATTTCAATGGAACTAAC+AGG | - | chr4.3:3220447-3220466 | MS.gene015843:intron | 30.0% | |
| TGTTTACCATTAACCATAAC+AGG | + | chr4.3:3221083-3221102 | None:intergenic | 30.0% | |
| TTTACTCAACCAAATACATG+TGG | - | chr4.3:3223415-3223434 | MS.gene015843:CDS | 30.0% | |
| ! | AATTAACCTGGAAGTTTTTC+TGG | + | chr4.3:3220637-3220656 | None:intergenic | 30.0% |
| ! | ACTCATCGTTAAACTTTTTG+AGG | - | chr4.3:3222805-3222824 | MS.gene015843:intron | 30.0% |
| ! | ATTTTCTTTTCTTAGCTAGG+TGG | + | chr4.3:3222167-3222186 | None:intergenic | 30.0% |
| ! | CTATCATTATAGGTTGGAAT+AGG | - | chr4.3:3222261-3222280 | MS.gene015843:CDS | 30.0% |
| ! | TTAGCTATTTCACACAAGAA+AGG | - | chr4.3:3224219-3224238 | MS.gene015843:CDS | 30.0% |
| ! | TTTTCTTTTCTTAGCTAGGT+GGG | + | chr4.3:3222166-3222185 | None:intergenic | 30.0% |
| !! | AAGTCACCTAACTTTGATTT+TGG | - | chr4.3:3220885-3220904 | MS.gene015843:intron | 30.0% |
| !! | ACAGTTTCATGCTTGTTATT+TGG | + | chr4.3:3223585-3223604 | None:intergenic | 30.0% |
| !! | CACCGCAAAATTAATTTGTA+TGG | - | chr4.3:3222087-3222106 | MS.gene015843:intron | 30.0% |
| !! | CTTAACTTGGTGCAAATTAA+TGG | - | chr4.3:3223457-3223476 | MS.gene015843:CDS | 30.0% |
| !! | GATTTTGGCAATGAATTTTC+AGG | - | chr4.3:3220900-3220919 | MS.gene015843:CDS | 30.0% |
| !! | TCATGTATTTTTGCATTCCT+TGG | - | chr4.3:3224282-3224301 | MS.gene015843:intron | 30.0% |
| !! | TTTAAGGTGTTGAATATCCA+AGG | + | chr4.3:3221483-3221502 | None:intergenic | 30.0% |
| !!! | CATCATAGCTTTTTCGAAAT+GGG | + | chr4.3:3221526-3221545 | None:intergenic | 30.0% |
| !!! | TCATCATAGCTTTTTCGAAA+TGG | + | chr4.3:3221527-3221546 | None:intergenic | 30.0% |
| !!! | TTTTGGTTCAACATATTGAG+TGG | + | chr4.3:3223484-3223503 | None:intergenic | 30.0% |
| AAAACCCGAGAAGACAAATT+GGG | - | chr4.3:3221154-3221173 | MS.gene015843:intron | 35.0% | |
| ACAATGCAATGGAAATTGAC+TGG | + | chr4.3:3224367-3224386 | None:intergenic | 35.0% | |
| AGAAAAGAGGTCTCTTAACT+TGG | - | chr4.3:3223444-3223463 | MS.gene015843:CDS | 35.0% | |
| AGAATTGTCATCAAGGATGA+TGG | + | chr4.3:3222538-3222557 | None:intergenic | 35.0% | |
| AGCCGAAATGATCAGATTTA+AGG | + | chr4.3:3221499-3221518 | None:intergenic | 35.0% | |
| ATCAATGGAAGAAGAGATAG+TGG | - | chr4.3:3221356-3221375 | MS.gene015843:intron | 35.0% | |
| ATCTTCATTACACTTCTCAC+AGG | - | chr4.3:3224486-3224505 | MS.gene015843:CDS | 35.0% | |
| CAACAACATCATAAACTAGG+TGG | - | chr4.3:3223725-3223744 | MS.gene015843:CDS | 35.0% | |
| CAACATGAAGAAGAGAAAGA+AGG | - | chr4.3:3221200-3221219 | MS.gene015843:intron | 35.0% | |
| CAGCAACAACATCATAAACT+AGG | - | chr4.3:3223722-3223741 | MS.gene015843:CDS | 35.0% | |
| CATAGCATTTGATTGGAACA+TGG | - | chr4.3:3221858-3221877 | MS.gene015843:intron | 35.0% | |
| CATGGTAAGAATTGTCATCA+AGG | + | chr4.3:3222545-3222564 | None:intergenic | 35.0% | |
| CATGTTCTTTGACTCAACTT+TGG | + | chr4.3:3220542-3220561 | None:intergenic | 35.0% | |
| GGTTGAAATACTCTTCTTAC+TGG | - | chr4.3:3224542-3224561 | MS.gene015843:CDS | 35.0% | |
| GTACACAGAAAACAATGCAA+TGG | + | chr4.3:3224378-3224397 | None:intergenic | 35.0% | |
| GTCTCACATCAAGTATATTG+AGG | + | chr4.3:3223177-3223196 | None:intergenic | 35.0% | |
| TATCGTCATCGTTGATATTG+TGG | - | chr4.3:3223142-3223161 | MS.gene015843:intron | 35.0% | |
| TCGCTAGGAAAAAACTATAG+CGG | - | chr4.3:3222737-3222756 | MS.gene015843:intron | 35.0% | |
| TCTCACTTTCCACATGTATT+TGG | + | chr4.3:3223427-3223446 | None:intergenic | 35.0% | |
| TCTCATAATAATGCCCACTA+GGG | - | chr4.3:3223870-3223889 | MS.gene015843:intron | 35.0% | |
| TGATCTCATAGATTCTAAGC+TGG | - | chr4.3:3220136-3220155 | MS.gene015843:CDS | 35.0% | |
| TGATTGTCAATTGTCATCGA+TGG | - | chr4.3:3223617-3223636 | MS.gene015843:CDS | 35.0% | |
| TGTGGACACAAATTTGATCA+AGG | - | chr4.3:3220197-3220216 | MS.gene015843:intron | 35.0% | |
| TTCAATGGAACTAACAGGAT+TGG | - | chr4.3:3220452-3220471 | MS.gene015843:intron | 35.0% | |
| TTCTCATAATAATGCCCACT+AGG | - | chr4.3:3223869-3223888 | MS.gene015843:intron | 35.0% | |
| ! | ACTATGATGACGTGGAAAAA+AGG | - | chr4.3:3224340-3224359 | MS.gene015843:intron | 35.0% |
| ! | ACTCACGGTTAAACATTTTG+AGG | + | chr4.3:3222924-3222943 | None:intergenic | 35.0% |
| ! | CTTTTTCCATAGACCATCAA+AGG | - | chr4.3:3220950-3220969 | MS.gene015843:CDS | 35.0% |
| ! | TATATGCCTTTGATGGTCTA+TGG | + | chr4.3:3220959-3220978 | None:intergenic | 35.0% |
| ! | TTATAGGTTGGAATAGGAGA+AGG | - | chr4.3:3222267-3222286 | MS.gene015843:CDS | 35.0% |
| !! | ACTGACACTGATTTATCATC+TGG | + | chr4.3:3222119-3222138 | None:intergenic | 35.0% |
| !! | AGCTTCTTGTTGGTTTCTAA+TGG | + | chr4.3:3224518-3224537 | None:intergenic | 35.0% |
| !! | GCATTTGTGAAGCTTGTTAA+AGG | + | chr4.3:3221461-3221480 | None:intergenic | 35.0% |
| !! | TGAAGCTTGTTAAAGGACTA+GGG | + | chr4.3:3221454-3221473 | None:intergenic | 35.0% |
| AACAAGCTTCACAAATGCCT+TGG | - | chr4.3:3221463-3221482 | MS.gene015843:intron | 40.0% | |
| AACGTCGTCTGATATCAAAG+AGG | - | chr4.3:3223796-3223815 | MS.gene015843:intron | 40.0% | |
| AAGTGGAAGTTCTTCTTCCA+AGG | - | chr4.3:3221379-3221398 | MS.gene015843:intron | 40.0% | |
| ACAACAACAACAACTGGTGA+AGG | - | chr4.3:3221308-3221327 | MS.gene015843:intron | 40.0% | |
| ACAAGAGAAATGCAAGCATC+AGG | - | chr4.3:3222297-3222316 | MS.gene015843:CDS | 40.0% | |
| ACCAGACCTGTTATGGTTAA+TGG | - | chr4.3:3221074-3221093 | MS.gene015843:intron | 40.0% | |
| ACCATTAACCATAACAGGTC+TGG | + | chr4.3:3221078-3221097 | None:intergenic | 40.0% | |
| ACGCAGCTTTCCATATAAGT+AGG | - | chr4.3:3222457-3222476 | MS.gene015843:intron | 40.0% | |
| AGTGCAACAACAACAACAAC+TGG | - | chr4.3:3221302-3221321 | MS.gene015843:intron | 40.0% | |
| ATACAACAGGAACACGAAAG+AGG | - | chr4.3:3220976-3220995 | MS.gene015843:intron | 40.0% | |
| ATCACCCAATTTGTCTTCTC+GGG | + | chr4.3:3221161-3221180 | None:intergenic | 40.0% | |
| CAAATTTGATCAAGGCAAGC+CGG | - | chr4.3:3220205-3220224 | MS.gene015843:intron | 40.0% | |
| CAACATCATAAACTAGGTGG+TGG | - | chr4.3:3223728-3223747 | MS.gene015843:CDS | 40.0% | |
| CACTAGGGAAAGAGAAAAGA+GGG | - | chr4.3:3223885-3223904 | MS.gene015843:intron | 40.0% | |
| CATCACCCAATTTGTCTTCT+CGG | + | chr4.3:3221162-3221181 | None:intergenic | 40.0% | |
| CATGTGGAAAGTGAGAAAAG+AGG | - | chr4.3:3223431-3223450 | MS.gene015843:CDS | 40.0% | |
| CCTGTTGTATATGCCTTTGA+TGG | + | chr4.3:3220966-3220985 | None:intergenic | 40.0% | |
| CGCTAGGAAAAAACTATAGC+GGG | - | chr4.3:3222738-3222757 | MS.gene015843:intron | 40.0% | |
| CTCACTATTGAAGGAGAAGA+TGG | - | chr4.3:3220595-3220614 | MS.gene015843:intron | 40.0% | |
| CTTCTTCATGTTGTCCAAGA+TGG | + | chr4.3:3221193-3221212 | None:intergenic | 40.0% | |
| CTTGTTCTCTACACCAACTT+CGG | - | chr4.3:3221122-3221141 | MS.gene015843:intron | 40.0% | |
| GAAAACCCGAGAAGACAAAT+TGG | - | chr4.3:3221153-3221172 | MS.gene015843:intron | 40.0% | |
| GAAACAAGATGGCACAAAAC+TGG | - | chr4.3:3221047-3221066 | MS.gene015843:intron | 40.0% | |
| GATGAAATGTCTGCTGTTGT+TGG | - | chr4.3:3221425-3221444 | MS.gene015843:intron | 40.0% | |
| GATTGGAAGGCCTACTTATA+TGG | + | chr4.3:3222470-3222489 | None:intergenic | 40.0% | |
| GGAGCATGATTGTTGAAACA+TGG | + | chr4.3:3222563-3222582 | None:intergenic | 40.0% | |
| GGTTTGGAGGAAGTCATTAT+GGG | - | chr4.3:3223764-3223783 | MS.gene015843:CDS | 40.0% | |
| GTAACTATGTATGTCGGTGT+CGG | + | chr4.3:3221626-3221645 | None:intergenic | 40.0% | |
| GTGATGCATCAATACCATCT+TGG | - | chr4.3:3221176-3221195 | MS.gene015843:intron | 40.0% | |
| GTTTGGAGGAAGTCATTATG+GGG | - | chr4.3:3223765-3223784 | MS.gene015843:CDS | 40.0% | |
| TCAGACCAATTACACTGTCT+TGG | + | chr4.3:3221263-3221282 | None:intergenic | 40.0% | |
| TCCTTGTAAGTCACACTCTT+CGG | + | chr4.3:3221015-3221034 | None:intergenic | 40.0% | |
| ! | AAAATGGGGTTGATTGTGCA+TGG | - | chr4.3:3223500-3223519 | MS.gene015843:CDS | 40.0% |
| ! | AACCTGGAAGTTTTTCTGGA+TGG | + | chr4.3:3220633-3220652 | None:intergenic | 40.0% |
| ! | ACCTGGAAGTTTTTCTGGAT+GGG | + | chr4.3:3220632-3220651 | None:intergenic | 40.0% |
| ! | ATGCACAATCAACCCCATTT+TGG | + | chr4.3:3223501-3223520 | None:intergenic | 40.0% |
| ! | ATTGTCATCAAGGATGATGG+TGG | + | chr4.3:3222535-3222554 | None:intergenic | 40.0% |
| ! | CCATCAAAGGCATATACAAC+AGG | - | chr4.3:3220963-3220982 | MS.gene015843:CDS | 40.0% |
| ! | CTCTTTTCTCTTTCCCTAGT+GGG | + | chr4.3:3223886-3223905 | None:intergenic | 40.0% |
| ! | GATGATGGTTGTTGTCATGA+GGG | + | chr4.3:3224576-3224595 | None:intergenic | 40.0% |
| ! | TGGTTTGGAGGAAGTCATTA+TGG | - | chr4.3:3223763-3223782 | MS.gene015843:CDS | 40.0% |
| ! | TGTGACTTACAAGGAAGTAC+AGG | - | chr4.3:3221020-3221039 | MS.gene015843:intron | 40.0% |
| ! | TTTTCGATTCTTGCCGAAGT+TGG | + | chr4.3:3221138-3221157 | None:intergenic | 40.0% |
| !! | AGCTTTTGACTATGATGACG+TGG | - | chr4.3:3224332-3224351 | MS.gene015843:intron | 40.0% |
| !! | ATCATAAACTAGGTGGTGGA+AGG | - | chr4.3:3223732-3223751 | MS.gene015843:CDS | 40.0% |
| !! | CACTGATTTATCATCTGGTC+AGG | + | chr4.3:3222114-3222133 | None:intergenic | 40.0% |
| !! | GCTGCGAACCTTTAAAACTA+TGG | - | chr4.3:3220256-3220275 | MS.gene015843:intron | 40.0% |
| !! | GTGAAGCTTGTTAAAGGACT+AGG | + | chr4.3:3221455-3221474 | None:intergenic | 40.0% |
| !! | TGATGATGGTTGTTGTCATG+AGG | + | chr4.3:3224577-3224596 | None:intergenic | 40.0% |
| !! | TTTTCAGGAGTGACAAGAGA+TGG | - | chr4.3:3220915-3220934 | MS.gene015843:CDS | 40.0% |
| ACAACAACTGGTGAAGGAAG+TGG | - | chr4.3:3221314-3221333 | MS.gene015843:intron | 45.0% | |
| ACAATTGCGATTGCATCGCT+AGG | - | chr4.3:3222722-3222741 | MS.gene015843:intron | 45.0% | |
| ACCCATCCAGAAAAACTTCC+AGG | - | chr4.3:3220628-3220647 | MS.gene015843:intron | 45.0% | |
| ACCGCGACTATTATACGTAC+CGG | + | chr4.3:3220227-3220246 | None:intergenic | 45.0% | |
| AGAGAAATGCAAGCATCAGG+AGG | - | chr4.3:3222300-3222319 | MS.gene015843:CDS | 45.0% | |
| AGTAGCTAGCTAACCAACGT+TGG | - | chr4.3:3222136-3222155 | MS.gene015843:CDS | 45.0% | |
| AGTGTTTGGATCCACACAAC+TGG | + | chr4.3:3220169-3220188 | None:intergenic | 45.0% | |
| CAAATTTGTGTCCACAGCGA+GGG | + | chr4.3:3220193-3220212 | None:intergenic | 45.0% | |
| CACAGCCAAGACAGTGTAAT+TGG | - | chr4.3:3221255-3221274 | MS.gene015843:intron | 45.0% | |
| CCACTAGGGAAAGAGAAAAG+AGG | - | chr4.3:3223884-3223903 | MS.gene015843:intron | 45.0% | |
| GAAACCAACAAGAAGCTGAG+TGG | - | chr4.3:3224521-3224540 | MS.gene015843:CDS | 45.0% | |
| GGATCAAATTTCACTCCTGC+TGG | + | chr4.3:3220487-3220506 | None:intergenic | 45.0% | |
| GTACAGGAGGAGAAACAAGA+TGG | - | chr4.3:3221036-3221055 | MS.gene015843:intron | 45.0% | |
| TCAAATTTGTGTCCACAGCG+AGG | + | chr4.3:3220194-3220213 | None:intergenic | 45.0% | |
| TCAACCACTCAGCTTCTTGT+TGG | + | chr4.3:3224528-3224547 | None:intergenic | 45.0% | |
| TGGTAAGACCAGACCTGTTA+TGG | - | chr4.3:3221067-3221086 | MS.gene015843:intron | 45.0% | |
| ! | ACCGAAGAGTGTGACTTACA+AGG | - | chr4.3:3221011-3221030 | MS.gene015843:intron | 45.0% |
| ! | ATAGTGGAGATGGGATTGGA+AGG | + | chr4.3:3222483-3222502 | None:intergenic | 45.0% |
| ! | CCTCTTTTCTCTTTCCCTAG+TGG | + | chr4.3:3223887-3223906 | None:intergenic | 45.0% |
| ! | GACTTACAAGGAAGTACAGG+AGG | - | chr4.3:3221023-3221042 | MS.gene015843:intron | 45.0% |
| !! | GATGATAGTGGAGATGGGAT+TGG | + | chr4.3:3222487-3222506 | None:intergenic | 45.0% |
| !! | GGAAGAAGAGATAGTGGAAG+TGG | - | chr4.3:3221362-3221381 | MS.gene015843:intron | 45.0% |
| !! | GGAGAGATGATAGTGGAGAT+GGG | + | chr4.3:3222492-3222511 | None:intergenic | 45.0% |
| !! | TGGAACTAACAGGATTGGCT+AGG | - | chr4.3:3220457-3220476 | MS.gene015843:intron | 45.0% |
| !! | TGGAGAGATGATAGTGGAGA+TGG | + | chr4.3:3222493-3222512 | None:intergenic | 45.0% |
| !!! | AATTATTAAAGTTTTATTAA+TGG | - | chr4.3:3222946-3222965 | MS.gene015843:intron | 5.0% |
| !!! | CTTTTTTATAAATAAAAATT+GGG | - | chr4.3:3223083-3223102 | MS.gene015843:intron | 5.0% |
| !!! | TCTTTTTTATAAATAAAAAT+TGG | - | chr4.3:3223082-3223101 | MS.gene015843:intron | 5.0% |
| !!! | TTTTTTATAAATAAAAATTG+GGG | - | chr4.3:3223084-3223103 | MS.gene015843:intron | 5.0% |
| ACAACTGGTGAAGGAAGTGG+TGG | - | chr4.3:3221317-3221336 | MS.gene015843:intron | 50.0% | |
| ACGTATAATAGTCGCGGTCG+CGG | - | chr4.3:3220229-3220248 | MS.gene015843:intron | 50.0% | |
| ATCAGGAGGCTCATGTGATC+AGG | - | chr4.3:3222314-3222333 | MS.gene015843:CDS | 50.0% | |
| CTAGGTGGGTAAACCAACGT+TGG | + | chr4.3:3222152-3222171 | None:intergenic | 50.0% | |
| CTGCGTTTGCACTAATCTGC+TGG | + | chr4.3:3222443-3222462 | None:intergenic | 50.0% | |
| GCCGGTACGTATAATAGTCG+CGG | - | chr4.3:3220223-3220242 | MS.gene015843:intron | 50.0% | |
| TTGTTGTCATGAGGGTCGAC+TGG | + | chr4.3:3224568-3224587 | None:intergenic | 50.0% | |
| !! | ATGGTGGATGTGTGATGGAG+GGG | + | chr4.3:3222519-3222538 | None:intergenic | 50.0% |
| !! | ATGTATGTCGGTGTCGGACA+TGG | + | chr4.3:3221620-3221639 | None:intergenic | 50.0% |
| !! | GATGGTGGATGTGTGATGGA+GGG | + | chr4.3:3222520-3222539 | None:intergenic | 50.0% |
| !! | GGATGATGGTGGATGTGTGA+TGG | + | chr4.3:3222524-3222543 | None:intergenic | 50.0% |
| !! | TGATGGTGGATGTGTGATGG+AGG | + | chr4.3:3222521-3222540 | None:intergenic | 50.0% |
| AGGAGGCTCATGTGATCAGG+AGG | - | chr4.3:3222317-3222336 | MS.gene015843:CDS | 55.0% | |
| GGGAGGTGGAGAGATGATAG+TGG | + | chr4.3:3222499-3222518 | None:intergenic | 55.0% | |
| TGGAAGGTCTGCGTCTGGTT+TGG | - | chr4.3:3223748-3223767 | MS.gene015843:CDS | 55.0% | |
| ! | GATTGGCTAGGTCTACCAGC+AGG | - | chr4.3:3220469-3220488 | MS.gene015843:intron | 55.0% |
| !! | AAGGTCTGCGTCTGGTTTGG+AGG | - | chr4.3:3223751-3223770 | MS.gene015843:CDS | 55.0% |
| !! | CTGGAAGAGCACCAGTTGTG+TGG | - | chr4.3:3220155-3220174 | MS.gene015843:CDS | 55.0% |
| CTGCTGCTGTTGCTGCCATG+TGG | + | chr4.3:3223705-3223724 | None:intergenic | 60.0% | |
| TCCAAACACTGCCCTCGCTG+TGG | - | chr4.3:3220179-3220198 | MS.gene015843:CDS | 60.0% | |
| TCCACAGCGAGGGCAGTGTT+TGG | + | chr4.3:3220183-3220202 | None:intergenic | 60.0% | |
| ! | GATGTGTGATGGAGGGGAGG+TGG | + | chr4.3:3222513-3222532 | None:intergenic | 60.0% |
| ! | GTGGATGTGTGATGGAGGGG+AGG | + | chr4.3:3222516-3222535 | None:intergenic | 60.0% |
| !! | GGTGGTGGAAGGTCTGCGTC+TGG | - | chr4.3:3223743-3223762 | MS.gene015843:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 3220101 | 3224606 | 3220101 | ID=MS.gene015843 |
| chr4.3 | mRNA | 3220101 | 3224606 | 3220101 | ID=MS.gene015843.t1;Parent=MS.gene015843 |
| chr4.3 | exon | 3224481 | 3224606 | 3224481 | ID=MS.gene015843.t1.exon1;Parent=MS.gene015843.t1 |
| chr4.3 | CDS | 3224481 | 3224606 | 3224481 | ID=cds.MS.gene015843.t1;Parent=MS.gene015843.t1 |
| chr4.3 | exon | 3224058 | 3224238 | 3224058 | ID=MS.gene015843.t1.exon2;Parent=MS.gene015843.t1 |
| chr4.3 | CDS | 3224058 | 3224238 | 3224058 | ID=cds.MS.gene015843.t1;Parent=MS.gene015843.t1 |
| chr4.3 | exon | 3223160 | 3223785 | 3223160 | ID=MS.gene015843.t1.exon3;Parent=MS.gene015843.t1 |
| chr4.3 | CDS | 3223160 | 3223785 | 3223160 | ID=cds.MS.gene015843.t1;Parent=MS.gene015843.t1 |
| chr4.3 | exon | 3222105 | 3222434 | 3222105 | ID=MS.gene015843.t1.exon4;Parent=MS.gene015843.t1 |
| chr4.3 | CDS | 3222105 | 3222434 | 3222105 | ID=cds.MS.gene015843.t1;Parent=MS.gene015843.t1 |
| chr4.3 | exon | 3220890 | 3220994 | 3220890 | ID=MS.gene015843.t1.exon5;Parent=MS.gene015843.t1 |
| chr4.3 | CDS | 3220890 | 3220994 | 3220890 | ID=cds.MS.gene015843.t1;Parent=MS.gene015843.t1 |
| chr4.3 | exon | 3220101 | 3220199 | 3220101 | ID=MS.gene015843.t1.exon6;Parent=MS.gene015843.t1 |
| chr4.3 | CDS | 3220101 | 3220199 | 3220101 | ID=cds.MS.gene015843.t1;Parent=MS.gene015843.t1 |
| Gene Sequence |
| Protein sequence |
