AlfalfaGEDB | MS.gene015989

M. sativa cultivar XinJiangDaYe / MS.gene015989

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015989.t1	XP_003588769.1	92.8	779	56	0	1	779	1	779	0.00E+00	1474.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015989.t1	Q8RWZ5	56.7	771	311	12	19	777	11	770	7.9e-247	854.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015989.t1	G7I709	92.8	779	56	0	1	779	1	779	0.0e+00	1474.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015989.t1	MTR_1g012550	95.892	779	32	0	1	779	1	779	0.0	1514
MS.gene015989.t1	MTR_3g107070	67.717	762	226	10	32	785	8	757	0.0	1038
MS.gene015989.t1	MTR_2g073250	65.013	786	239	14	4	779	5	764	0.0	1003
MS.gene015989.t1	MTR_2g080080	63.317	796	256	13	4	791	5	772	0.0	996
MS.gene015989.t1	MTR_2g080100	61.069	786	232	17	5	779	7	729	0.0	915
MS.gene015989.t1	MTR_2g080090	56.178	785	273	17	4	779	5	727	0.0	805
MS.gene015989.t1	MTR_2g103810	54.122	752	327	10	34	777	28	769	0.0	801
MS.gene015989.t1	MTR_3g072800	36.588	809	430	19	39	779	28	821	8.90e-146	450
MS.gene015989.t1	MTR_1g099400	35.578	787	414	22	59	773	30	795	5.10e-135	421
MS.gene015989.t1	MTR_6g043790	37.042	737	402	23	79	779	64	774	1.58e-133	417

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015989.t1	AT4G32300	57.623	774	305	12	16	777	8	770	0.0	884
MS.gene015989.t1	AT5G35370	35.891	808	439	25	39	785	30	819	8.24e-150	461
MS.gene015989.t1	AT5G24080	35.965	798	398	31	50	773	45	803	2.29e-131	412
MS.gene015989.t1	AT2G19130	36.198	768	409	25	58	777	38	772	2.92e-125	395
MS.gene015989.t1	AT1G34300	34.586	798	385	29	45	777	37	762	7.33e-124	391
MS.gene015989.t1	AT5G24080	36.454	705	349	27	139	773	1	676	1.22e-120	380
MS.gene015989.t1	AT5G24080	36.454	705	349	27	139	773	1	676	1.22e-120	380
MS.gene015989.t1	AT4G00340	33.333	768	435	18	51	773	26	761	4.10e-115	368
MS.gene015989.t1	AT4G00340	32.812	768	418	19	51	773	26	740	2.48e-112	360
MS.gene015989.t1	AT5G20050	47.452	314	147	5	481	777	82	394	8.94e-88	285

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Find 130 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGCTA+TGG	0.437162	1.4:+8513711	MS.gene015989:CDS
AAAATGGTTCATTGGATAAA+TGG	0.241532	1.4:+8513400	MS.gene015989:CDS
AAAGTTGTACAAATGCTTGA+GGG	0.545852	1.4:+8513963	MS.gene015989:CDS
AAATTGGAAGGAATTGGTCA+AGG	0.603307	1.4:+8513258	MS.gene015989:CDS
AACAAACAAGAATTTGGTTT+TGG	0.272697	1.4:+8511848	MS.gene015989:CDS
AACTGCGACGAATAACTTCT+CGG	0.472926	1.4:+8513161	MS.gene015989:CDS
AACTTATCAGAATTAGAAAC+AGG	0.475908	1.4:-8511965	None:intergenic
AAGAGGCCAATGATTTCTCA+TGG	0.520967	1.4:-8511666	None:intergenic
AAGATCTCACCGGGATTTGA+AGG	0.474895	1.4:+8511779	MS.gene015989:CDS
AAGCATTCATCACCATCATT+TGG	0.408875	1.4:+8513317	MS.gene015989:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTGTACAAATGCTTGA+GGG	+	chr1.4:8513963-8513982	MS.gene015989:CDS	30.0%
ATATTCTTTCAAAGCAGTTC+AGG	+	chr1.4:8512808-8512827	MS.gene015989:CDS	30.0%
ATCTAGCCTATTATTATTGC+TGG	+	chr1.4:8514362-8514381	MS.gene015989:intron	30.0%
ATGAATTGGATTGATAGGAA+TGG	+	chr1.4:8511809-8511828	MS.gene015989:CDS	30.0%
CAACACTTGATTCAAATTCA+TGG	+	chr1.4:8512365-8512384	MS.gene015989:CDS	30.0%
CAGAATGTGATTCAATTTCA+AGG	-	chr1.4:8512240-8512259	None:intergenic	30.0%
CTCAAATGAATTGGATTGAT+AGG	+	chr1.4:8511804-8511823	MS.gene015989:CDS	30.0%
CTCTCATTGTTGTAAAAACA+TGG	-	chr1.4:8513638-8513657	None:intergenic	30.0%
CTTAATAATAAAGGCTCAAG+TGG	+	chr1.4:8512499-8512518	MS.gene015989:CDS	30.0%
CTTGAAATTGAATCACATTC+TGG	+	chr1.4:8512238-8512257	MS.gene015989:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	8511668	8514783	8511668	ID=MS.gene015989
chr1.4	mRNA	8511668	8514783	8511668	ID=MS.gene015989.t1;Parent=MS.gene015989
chr1.4	exon	8511668	8514004	8511668	ID=MS.gene015989.t1.exon1;Parent=MS.gene015989.t1
chr1.4	CDS	8511668	8514004	8511668	ID=cds.MS.gene015989.t1;Parent=MS.gene015989.t1
chr1.4	exon	8514745	8514783	8514745	ID=MS.gene015989.t1.exon2;Parent=MS.gene015989.t1
chr1.4	CDS	8514745	8514783	8514745	ID=cds.MS.gene015989.t1;Parent=MS.gene015989.t1

Gene Sequence

>MS.gene015989

ATGAGAAATCATTGGCCTCTTTTCCATATTGTGAATACCCTATGGTTATGTTTGTGTATCATACTTTTGTCTGAAGTAGTTTTGGTTTCGGCTGGTATTCAACGGATTGGAAAGATCTCACCGGGATTTGAAGGCTCTCAAATGAATTGGATTGATAGGAATGGAAAATTTCTTGTGTCAAACAAACAAGAATTTGGTTTTGGCTTTGTCACAACTTCAAATGACAACACATTGTTTCTACTTGCAATAGTCCACATGGATAGCACCAAAATTGTTTGGACTGCAAATAGAGAAGTTCCTGTTTCTAATTCTGATAAGTTTGTGTTTGATGAAAAGGGTAATGCTTTTTTACAAAAAGGAAAAATTTCGGTTTGGTCAACAAATACAAGTGGCGTGAAAGTTTCTTCAATGGAATTACAAGACAATGGAAATTTAGTTTTGCTTGGAAATGATAGTAATGTGATTTGGCAAAGTTTTGATCATCCAACAGATACATTATTACCAATGCAAAACTTCACGAAAGGAATGAAACTTATCAGTGAACCTGATTCTAACAATTTCACCTATGTCCTTGAAATTGAATCACATTCTGGTAATGTTCTTCTTTCCACAGGTTTACAATCTCCACAGCCTTATTGGTCTATGCAAAAAGATATCCGTAAAATAGCTAATGAAAACGGCAACGATGTAGCTTTTGCAACACTTGATTCAAATTCATGGAAGTTCTATGACAAAAGGAAGTCATTGCTGTGGCAATTTATTTTTTCTGATGCTGCAAATGCAACTTGGATAGCAGTTTTAGGAAGTGATGGCTTCATAACTTTCACCAATCTTAATAATAAAGGCTCAAGTGGTTCATCAACAACAAGAATACCTCAAGATTCTTGTAGTACACCACAACCTTGTGGACCTTATAACATATGCATTGGTGACAAAAAATGCAGTTGCCCTTCTATTCTTAGCTCTAGTCCTAGCTGCGAACCGGGTTTTGTTTCACCTTGTACCTCGAAAAGTTCCATTGAGCTCATTGAAGGTGATGATGGACTCAATTACTTTGCACTTGGGTTTCTTCCGCCTTCTTTGAAAACCGATTTGATTGGTTGCAAAAATTCTTGCAGTGAAAACTGCTCATGTCTTGCTATATTCTTTCAAAGCAGTTCAGGAAACTGTTACCTTTTAGATAGGATTGGGAGCTTTGTGAAAACTGATAATGATTCTGGTTTTGTCTCTTACATTAAAGTCTCAAGAGACGGAAGTAGTGACACAGAAACAGACGCAGCAGAAATGAGAAACAGGAATGTGCAGACAATAGTTGTTGTGATCATTGTCGTAGGAACATTGTTTGTCATTTCTGGCATGATCTATGTGGGATTAAAATGCTCAAAGAAAAAGGAAAATTTGCCTGAATCTCTGGTCGAGAATTCGGACGGTGATGATGATTTCTTGAAGAGTTTAACTAGTATGCCGATCCGTTTCAGCTACAACGATTTAGAAACTGCGACGAATAACTTCTCGGTGAAGTTAGGTCAAGGTGGTTTCGGTTCAGTATATAAAGGAATTCTAAAAGATGAAACTCAAATAGCTGTGAAGAAATTGGAAGGAATTGGTCAAGGGAAGAAAGAATTTAAGGTTGAAGTTAGCACTATTGGAAGCATTCATCACCATCATTTGGTAAGGCTTAAAGGTTTTTGTGCTGAAGGATCTCATAAACTTCTTGTTTATGAATATATGGAAAATGGTTCATTGGATAAATGGATATTCAAAAAAAATAAAGAATTATCTTTGGATTGGAACACAAGGTACAAAATTGCACTAGGAACAGCTAAAGGACTAGCTTATTTGCATGAAGATTGCGACTCAAAGATTGTTCATTGTGATATTAAACCAGAAAATGTGCTTTTAGATGATAATTTTGAAGCAAAAGTTTCCGATTTCGGTCTTGCGAAGCTCATGAACCGCGAACAAAGCCATGTTTTTACAACAATGAGAGGAACAAGAGGTTATTTAGCACCAGAATGGATCACAAACTATGCTATATCAGAGAAAAGTGATGTTTATAGCTATGGAATGGTGTTGTTAGAGATTATTGGAGGAAGGAAAAACTATGATCCTAAAGAAAATTCGGAGAAATCATATTTTCCTTCTTTTGCTTATAAGATGATGGAACAAGGGAAGGTGGAAGATTTAATTGATTCTGAGGTGAAAATATGTGAAAATGATGTGAGAGTTGAGATTGCTTTGAATGTTGCATTTTTGTGTATACAAGAAGATATGTGTTTGAGGCCTTCTATGAATAAAGTTGTACAAATGCTTGAGGGTCTATGTGAAGTTCCTAAGGTACCAAATGGGTCTCCATTAGGTTCTAAATTTTATTTAAATTTGCTTAGACCAACAAGTGAGAGTGGCACTTCTTCAGAACCAACAGAGGTGAATAGTGATGCATATCTCTCTGCTGTTAGACTTTCAGGGCCAAGATAACGGCGAAACACACATATATATACTAAGTGTAGAAAAGTGAGAAGTTGCAGGTTCTAATTAAATATCCTTGTAGTCTTTTACCGTCTAAGTTGTACTCACACGGGATGTTGTAATTTATTTTCATTAGTAGTATTTTTCTTCTTCTTTCTTTTTGGTGTTGATGAGGAAATTGGTATCAAATTCATGAGTATAGATAGATTCTCTCCAATCTATAAAATCTAGCCTATTATTATTGCTGGTTTTTTAATATAGAATTCAAATATAGCGTCTTAAATATAGCATATATTGTTTTTTTTTTTTTACAAAAGCATATATAGTTATGCAGTCTCTAATACACCAGCTAATAGATTTTACAACCATTATATATAATACCCATCGTTTTGGAAATTATCAAATAATAATAAGAATGATCGTTCCTTTTAATAAATGTGGACGGTGTCAATTTCTCTGGTTTCAATTTGAGTGAGTTAATTTAGTTTCTTCAAAAAAATGTGGACGGTGAAGAGAGAGCATAAAGTATATTTTCTTATAGAGGCAGTCTTACTTGTGAAATTATAGTGAAGTGTGTAATATATAATTTGTTCAAAACTTGTTAGCAGGAAGATGCCAAGAACTTTGAGGCGGCAGCAGCAACATAA

Protein sequence

>MS.gene015989.t1

MRNHWPLFHIVNTLWLCLCIILLSEVVLVSAGIQRIGKISPGFEGSQMNWIDRNGKFLVSNKQEFGFGFVTTSNDNTLFLLAIVHMDSTKIVWTANREVPVSNSDKFVFDEKGNAFLQKGKISVWSTNTSGVKVSSMELQDNGNLVLLGNDSNVIWQSFDHPTDTLLPMQNFTKGMKLISEPDSNNFTYVLEIESHSGNVLLSTGLQSPQPYWSMQKDIRKIANENGNDVAFATLDSNSWKFYDKRKSLLWQFIFSDAANATWIAVLGSDGFITFTNLNNKGSSGSSTTRIPQDSCSTPQPCGPYNICIGDKKCSCPSILSSSPSCEPGFVSPCTSKSSIELIEGDDGLNYFALGFLPPSLKTDLIGCKNSCSENCSCLAIFFQSSSGNCYLLDRIGSFVKTDNDSGFVSYIKVSRDGSSDTETDAAEMRNRNVQTIVVVIIVVGTLFVISGMIYVGLKCSKKKENLPESLVENSDGDDDFLKSLTSMPIRFSYNDLETATNNFSVKLGQGGFGSVYKGILKDETQIAVKKLEGIGQGKKEFKVEVSTIGSIHHHHLVRLKGFCAEGSHKLLVYEYMENGSLDKWIFKKNKELSLDWNTRYKIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDNFEAKVSDFGLAKLMNREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPKENSEKSYFPSFAYKMMEQGKVEDLIDSEVKICENDVRVEIALNVAFLCIQEDMCLRPSMNKVVQMLEGLCEVPKEDAKNFEAAAAT