AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016002


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016002.t1 MTR_1g012760 92.832 279 18 1 1 279 1 277 0.0 538
MS.gene016002.t1 MTR_1g012760 89.455 275 27 1 5 279 16 288 0.0 508
MS.gene016002.t1 MTR_2g090505 39.773 176 100 2 35 204 83 258 6.93e-38 136
MS.gene016002.t1 MTR_1g099140 44.242 165 86 2 40 198 88 252 1.81e-36 136
MS.gene016002.t1 MTR_6g029530 41.243 177 94 3 30 196 493 669 2.80e-34 131
MS.gene016002.t1 MTR_3g116710 40.678 177 96 4 26 194 67 242 1.11e-33 123
MS.gene016002.t1 MTR_3g077875 35.795 176 106 3 35 204 78 252 4.15e-33 122
MS.gene016002.t1 MTR_3g015530 39.490 157 91 2 32 184 46 202 5.35e-33 121
MS.gene016002.t1 MTR_3g034840 39.490 157 88 3 24 174 57 212 5.78e-31 115
MS.gene016002.t1 MTR_0599s0020 39.490 157 88 3 24 174 57 212 5.78e-31 115
MS.gene016002.t1 MTR_3g072200 39.735 151 87 2 49 195 59 209 3.12e-30 119
MS.gene016002.t1 MTR_6g464570 37.931 145 83 3 29 166 8 152 3.72e-28 106
MS.gene016002.t1 MTR_5g046145 43.165 139 70 2 40 175 124 256 5.40e-28 110
MS.gene016002.t1 MTR_4g119600 38.636 176 93 4 35 201 60 229 2.05e-27 108
MS.gene016002.t1 MTR_5g006100 36.585 164 97 3 47 204 66 228 1.53e-26 108
MS.gene016002.t1 MTR_6g075990 37.356 174 94 4 35 199 78 245 2.78e-26 103
MS.gene016002.t1 MTR_0528s0010 42.105 114 66 0 91 204 6 119 6.26e-26 100
MS.gene016002.t1 MTR_5g046160 38.509 161 75 5 50 204 55 197 4.59e-25 100
MS.gene016002.t1 MTR_5g032220 34.682 173 97 2 35 204 71 230 6.81e-25 103
MS.gene016002.t1 MTR_3g087440 38.028 142 81 3 41 176 84 224 3.79e-24 97.8
MS.gene016002.t1 MTR_5g031650 39.333 150 76 4 35 175 82 225 6.82e-24 97.1
MS.gene016002.t1 MTR_4g120790 32.571 175 89 2 31 204 60 206 7.11e-24 97.1
MS.gene016002.t1 MTR_2g026585 30.178 169 90 2 32 199 60 201 1.04e-21 94.0
MS.gene016002.t1 MTR_1g081740 31.646 158 80 2 32 188 59 189 3.25e-21 89.0
MS.gene016002.t1 MTR_2g461140 33.962 159 72 3 45 197 51 182 4.55e-21 88.2
MS.gene016002.t1 MTR_2g023130 34.132 167 67 3 41 204 30 156 6.53e-21 89.0
MS.gene016002.t1 MTR_4g057300 38.281 128 75 2 81 204 2 129 1.24e-19 87.4
MS.gene016002.t1 MTR_3g030230 41.346 104 57 2 77 176 68 171 1.97e-19 83.6
MS.gene016002.t1 MTR_2g067930 35.294 153 89 3 57 199 44 196 3.60e-19 83.6
MS.gene016002.t1 MTR_8g107490 33.333 177 107 5 9 175 7 182 5.23e-19 85.1
MS.gene016002.t1 MTR_1g058140 37.615 109 67 1 92 199 89 197 9.80e-19 83.2
MS.gene016002.t1 MTR_3g067290 35.252 139 85 3 56 190 83 220 1.38e-18 82.4
MS.gene016002.t1 MTR_4g057975 32.099 162 98 5 21 176 43 198 1.95e-18 81.6
MS.gene016002.t1 MTR_7g065910 35.385 130 69 3 81 204 34 154 2.80e-18 84.0
MS.gene016002.t1 MTR_8g445570 35.849 106 66 2 100 204 6 110 5.04e-18 78.2
MS.gene016002.t1 MTR_0156s0040 38.462 130 74 2 81 204 2 131 5.47e-18 80.1
MS.gene016002.t1 MTR_7g050385 36.134 119 72 2 32 146 111 229 8.20e-18 80.9
MS.gene016002.t1 MTR_3g462670 32.237 152 98 3 57 204 38 188 1.05e-17 80.1
MS.gene016002.t1 MTR_5g079560 31.169 154 95 5 35 178 74 226 2.40e-17 79.7
MS.gene016002.t1 MTR_4g100470 38.835 103 63 0 102 204 71 173 3.77e-17 78.2
MS.gene016002.t1 MTR_1g098990 32.941 170 84 3 35 203 60 200 4.05e-17 79.7
MS.gene016002.t1 MTR_7g106560 37.113 97 60 1 109 204 92 188 5.01e-17 77.8
MS.gene016002.t1 MTR_0116s0050 30.899 178 89 4 20 196 27 171 6.75e-17 76.6
MS.gene016002.t1 MTR_8g103800 30.220 182 101 4 21 201 43 199 1.47e-16 78.2
MS.gene016002.t1 MTR_8g009330 35.915 142 71 5 25 157 76 206 2.37e-16 76.6
MS.gene016002.t1 MTR_1g043440 36.170 141 69 4 121 255 176 301 4.41e-16 77.0
MS.gene016002.t1 MTR_5g072970 38.298 94 58 0 111 204 33 126 9.18e-16 75.9
MS.gene016002.t1 MTR_7g034570 38.739 111 62 2 81 190 76 181 5.96e-15 72.0
MS.gene016002.t1 MTR_4g113170 37.079 89 55 1 110 197 74 162 7.20e-15 74.7
MS.gene016002.t1 MTR_5g060540 29.333 150 85 1 35 184 42 170 1.03e-14 73.9
MS.gene016002.t1 MTR_6g089230 34.211 114 56 3 92 204 38 133 1.27e-14 72.0
MS.gene016002.t1 MTR_7g010970 40.217 92 48 3 84 169 5 95 2.99e-14 70.9
MS.gene016002.t1 MTR_5g046245 39.175 97 58 1 109 204 6 102 8.32e-14 69.3
MS.gene016002.t1 MTR_7g024830 40.845 71 42 0 134 204 1 71 9.31e-14 65.5
MS.gene016002.t1 MTR_5g073000 36.000 100 64 0 109 208 109 208 9.50e-14 71.2
MS.gene016002.t1 MTR_7g056020 25.405 185 112 3 25 204 373 536 9.93e-14 71.2
MS.gene016002.t1 MTR_7g064870 38.938 113 61 3 46 152 54 164 2.38e-13 67.4
MS.gene016002.t1 MTR_2g027000 42.466 73 42 0 121 193 101 173 2.87e-13 67.0
MS.gene016002.t1 MTR_5g070810 38.000 100 55 3 60 153 14 112 3.07e-13 65.5
MS.gene016002.t1 MTR_8g020433 31.933 119 80 1 92 209 70 188 4.82e-13 68.9
MS.gene016002.t1 MTR_3g437000 37.500 88 52 1 32 116 38 125 9.49e-13 64.3
MS.gene016002.t1 MTR_6g081290 42.708 96 51 2 81 173 3 97 1.06e-12 63.2
MS.gene016002.t1 MTR_8g016360 31.618 136 85 3 16 146 1 133 1.47e-12 63.9
MS.gene016002.t1 MTR_4g051638 30.579 121 80 2 32 148 120 240 1.61e-12 66.2
MS.gene016002.t1 MTR_8g038805 39.744 78 43 2 83 156 55 132 4.25e-12 62.8
MS.gene016002.t1 MTR_7g050365 35.246 122 53 4 86 204 20 118 7.35e-12 63.5
MS.gene016002.t1 MTR_1g080040 35.789 95 55 2 81 169 1 95 8.62e-12 62.0
MS.gene016002.t1 MTR_1g052890 37.037 81 51 0 121 201 13 93 2.79e-11 63.2
MS.gene016002.t1 MTR_3g467720 33.010 103 56 1 88 190 49 138 5.71e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCAACACTTCAGATTT+TGG 0.127175 1.4:-8366801 None:intergenic
GGACATGGCGCCATCGTTTC+TGG 0.166049 1.4:-8367065 None:intergenic
GCCAGAGTTGGAAGCGATTC+AGG 0.243223 1.4:+8366869 MS.gene016002:CDS
CAGAGAAGGAGAAGGAAAAT+TGG 0.276242 1.4:+8367093 MS.gene016002:CDS
CGAGGTGAAGCAGCCAAGTT+AGG 0.314453 1.4:+8366375 MS.gene016002:CDS
TCATTTAAACGGCCTGCAAT+AGG 0.361423 1.4:-8366627 None:intergenic
TTAGAAGAACAGCCTATTGC+AGG 0.373206 1.4:+8366615 MS.gene016002:CDS
TCTGGCAAAATAGATATATC+TGG 0.373242 1.4:-8366852 None:intergenic
TCGATTACGAAATTCTTTAT+CGG 0.375032 1.4:-8366331 None:intergenic
TGAGTGTCCATTCAGATTGC+GGG 0.385405 1.4:+8366518 MS.gene016002:CDS
ATATCTGGTTGATCTTCCTT+TGG 0.393013 1.4:-8366837 None:intergenic
TCATCTCTTCCTCATTTAAA+CGG 0.399399 1.4:-8366638 None:intergenic
TCGACTGGTTCAGCACTGTT+AGG 0.410500 1.4:-8366276 None:intergenic
ACCTGAATCGCTTCCAACTC+TGG 0.412695 1.4:-8366870 None:intergenic
TTTCTCCGTCAACCCTTGTC+AGG 0.435693 1.4:+8364000 MS.gene016002:CDS
AACAATACCAAACCCTAACT+TGG 0.442441 1.4:-8366388 None:intergenic
CGCTTATACTTGAATGCAAA+AGG 0.445911 1.4:+8366442 MS.gene016002:CDS
GAAGCAGCCAAGTTAGGGTT+TGG 0.454402 1.4:+8366381 MS.gene016002:CDS
GGTATGGAGGATCCCTCTGC+TGG 0.464129 1.4:+8366246 MS.gene016002:intron
TCCTTCTCTGCAGGAGGACA+TGG 0.465704 1.4:-8367080 None:intergenic
ATTTCAAAGTCAAATAATAG+AGG 0.466691 1.4:+8366411 MS.gene016002:CDS
GACATGGCGCCATCGTTTCT+GGG 0.467856 1.4:-8367064 None:intergenic
TCCTTCTCCTTCTCTGCAGG+AGG 0.477318 1.4:-8367086 None:intergenic
AGAGAAGGAGAAGGAAAATT+GGG 0.484008 1.4:+8367094 MS.gene016002:CDS
AAATAACCCCGCAATCTGAA+TGG 0.485974 1.4:-8366525 None:intergenic
GAGGTATAACAAGTCTATGA+AGG 0.500697 1.4:+8366776 MS.gene016002:CDS
CACCTCGAACCCACTTCAGC+AGG 0.515291 1.4:-8366359 None:intergenic
AAAACACAATCATGAGATGA+TGG 0.519225 1.4:+8366587 MS.gene016002:CDS
GAGGTGAAGCAGCCAAGTTA+GGG 0.528533 1.4:+8366376 MS.gene016002:CDS
AGATTTATAATGCACGTTCG+AGG 0.531682 1.4:+8366757 MS.gene016002:CDS
TATTGCAGGCCGTTTAAATG+AGG 0.536027 1.4:+8366629 MS.gene016002:CDS
GCCATGTCCTCCTGCAGAGA+AGG 0.538358 1.4:+8367079 MS.gene016002:CDS
ATTTACCTGACAAGGGTTGA+CGG 0.539125 1.4:-8364005 None:intergenic
TAGTGAATATTTACCTGACA+AGG 0.545419 1.4:-8364013 None:intergenic
ATCGAGATGACCTGCTGAAG+TGG 0.550843 1.4:+8366349 MS.gene016002:CDS
ATTACGAAATTCTTTATCGG+TGG 0.564422 1.4:-8366328 None:intergenic
TGGGAAGTTACCGTAGTATG+TGG 0.565876 1.4:+8366564 MS.gene016002:CDS
GACCTGCTGAAGTGGGTTCG+AGG 0.578355 1.4:+8366357 MS.gene016002:CDS
GTGAGTGTCCATTCAGATTG+CGG 0.585943 1.4:+8366517 MS.gene016002:CDS
AAATCAAGAGACTCATCGAC+TGG 0.594128 1.4:-8366291 None:intergenic
AGAAAAGAAGAGCTGACGAT+GGG 0.596743 1.4:+8366721 MS.gene016002:CDS
AAGAAAAGAAGAGCTGACGA+TGG 0.604104 1.4:+8366720 MS.gene016002:CDS
AGGTATAACAAGTCTATGAA+GGG 0.614739 1.4:+8366777 MS.gene016002:CDS
GGTAACTTCCCATACGCCAG+AGG 0.621236 1.4:-8366553 None:intergenic
TGATGATGACGGTGTGCCAA+AGG 0.622138 1.4:+8366821 MS.gene016002:CDS
TGATACCATTTCAGGTATGG+AGG 0.622154 1.4:+8366233 MS.gene016002:intron
TCCTCCTGCAGAGAAGGAGA+AGG 0.625108 1.4:+8367085 MS.gene016002:CDS
TCGAGATGACCTGCTGAAGT+GGG 0.628333 1.4:+8366350 MS.gene016002:CDS
TTAGGCTTCAAACCAGCAGA+GGG 0.633057 1.4:-8366258 None:intergenic
GGGTCCAAAATCTGAAGTGT+TGG 0.635922 1.4:+8366797 MS.gene016002:CDS
ATACTTGAATGCAAAAGGAG+TGG 0.641681 1.4:+8366447 MS.gene016002:CDS
GTAACTTCCCATACGCCAGA+GGG 0.653240 1.4:-8366552 None:intergenic
AATAGCTTTCCCAGAAACGA+TGG 0.655369 1.4:+8367055 MS.gene016002:CDS
AGTGAATATTTACCTGACAA+GGG 0.658458 1.4:-8364012 None:intergenic
GAGTGTCCATTCAGATTGCG+GGG 0.660517 1.4:+8366519 MS.gene016002:CDS
GTTAGGCTTCAAACCAGCAG+AGG 0.669794 1.4:-8366259 None:intergenic
GAAGTGTTGGTTGATGATGA+CGG 0.720616 1.4:+8366810 MS.gene016002:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAGAATTTTAAAAC+AGG + chr1.4:8365495-8365514 MS.gene016002:intron 10.0%
!!! TTTTTTTTAATTTTCAGATT+CGG + chr1.4:8366979-8366998 MS.gene016002:intron 10.0%
!! AATTGTGCAAATATAATTAA+TGG - chr1.4:8366036-8366055 None:intergenic 15.0%
!! TTAATAGGCAAATTAAAATT+TGG - chr1.4:8365622-8365641 None:intergenic 15.0%
!!! AAAGTCATAAGAATATTTTT+TGG - chr1.4:8366699-8366718 None:intergenic 15.0%
!!! AAATATAATTAATGGATGAT+AGG - chr1.4:8366028-8366047 None:intergenic 15.0%
!!! AATTTTGAAAATATTTCAAG+AGG + chr1.4:8364282-8364301 MS.gene016002:intron 15.0%
!!! CAATCTTTTCATTTTAAAAA+GGG + chr1.4:8366151-8366170 MS.gene016002:intron 15.0%
!!! GTATTTTTATTCTAAGTATT+TGG + chr1.4:8365331-8365350 MS.gene016002:intron 15.0%
!!! TTATAAGACAATAACATTTT+GGG + chr1.4:8365019-8365038 MS.gene016002:intron 15.0%
!!! TTTATAAGACAATAACATTT+TGG + chr1.4:8365018-8365037 MS.gene016002:intron 15.0%
!!! TTTTTTATTATCAAGTTTGT+AGG + chr1.4:8364812-8364831 MS.gene016002:intron 15.0%
!! AAAAACTTAAATCCCTAAAA+CGG + chr1.4:8364068-8364087 MS.gene016002:intron 20.0%
!! AAACTGAAAAGTAATTACAT+TGG - chr1.4:8364228-8364247 None:intergenic 20.0%
!! AAAGTTAATTACAAGTCATA+CGG - chr1.4:8365831-8365850 None:intergenic 20.0%
!! ATTAACTTTGTAGTTATAAC+AGG + chr1.4:8365842-8365861 MS.gene016002:intron 20.0%
!! ATTTCAAAGTCAAATAATAG+AGG + chr1.4:8366411-8366430 MS.gene016002:CDS 20.0%
!! TAACATAAACACTCAAAATT+TGG - chr1.4:8365876-8365895 None:intergenic 20.0%
!!! AACACACATTTTGTAAAATA+AGG - chr1.4:8365993-8366012 None:intergenic 20.0%
!!! ACACACATTTTGTAAAATAA+GGG - chr1.4:8365992-8366011 None:intergenic 20.0%
!!! CATTTTTACAAATGCAAAAT+GGG + chr1.4:8365428-8365447 MS.gene016002:intron 20.0%
!!! CCAATCTTTTCATTTTAAAA+AGG + chr1.4:8366150-8366169 MS.gene016002:intron 20.0%
!!! CCTTTTTAAAATGAAAAGAT+TGG - chr1.4:8366153-8366172 None:intergenic 20.0%
!!! CTTTGTAATTTTATAAATGC+AGG + chr1.4:8365456-8365475 MS.gene016002:intron 20.0%
!!! GTTTTTATTATCAAGTTTGT+TGG + chr1.4:8364699-8364718 MS.gene016002:intron 20.0%
!!! TATTTTTACTGTTTCATCAT+CGG + chr1.4:8365400-8365419 MS.gene016002:intron 20.0%
!!! TCATAAGAATATTTTTTGGA+CGG - chr1.4:8366695-8366714 None:intergenic 20.0%
!!! TCATTTTTACAAATGCAAAA+TGG + chr1.4:8365427-8365446 MS.gene016002:intron 20.0%
!!! TCTGGTAAATTATTTAGTTT+TGG + chr1.4:8365075-8365094 MS.gene016002:intron 20.0%
!!! TTTAGTGAATTTTCTCAATT+GGG + chr1.4:8365671-8365690 MS.gene016002:intron 20.0%
!!! TTTTCTAGATCTAAATGTTA+GGG + chr1.4:8364171-8364190 MS.gene016002:intron 20.0%
!!! TTTTTCTAGATCTAAATGTT+AGG + chr1.4:8364170-8364189 MS.gene016002:intron 20.0%
! AAATCTTAACACCAAATTTG+CGG - chr1.4:8364526-8364545 None:intergenic 25.0%
! AACAAACAAGGTGTAAATTT+AGG - chr1.4:8364104-8364123 None:intergenic 25.0%
! AATTAAACCCAAAAACACAT+TGG + chr1.4:8364925-8364944 MS.gene016002:intron 25.0%
! ATCATGTTCATGAGAAAAAT+AGG - chr1.4:8366217-8366236 None:intergenic 25.0%
! ATTCAATAGTAATTCTGTTC+TGG + chr1.4:8366896-8366915 MS.gene016002:intron 25.0%
! CTTGAAACAAATCAACAAAT+TGG + chr1.4:8365167-8365186 MS.gene016002:intron 25.0%
! TAAAAATACAGTGTTCAATG+TGG - chr1.4:8365320-8365339 None:intergenic 25.0%
! TATGATCCTTGTGTTATATT+TGG + chr1.4:8364958-8364977 MS.gene016002:intron 25.0%
! TCGATTACGAAATTCTTTAT+CGG - chr1.4:8366334-8366353 None:intergenic 25.0%
!! AAAACTCAAGGGTAAAATTT+TGG + chr1.4:8364554-8364573 MS.gene016002:intron 25.0%
!! AAACTCAAGGGTAAAATTTT+GGG + chr1.4:8364555-8364574 MS.gene016002:intron 25.0%
!! ACTATGCATTTTTATAAGTG+TGG + chr1.4:8365361-8365380 MS.gene016002:intron 25.0%
!! AGAATTTGTTTCATCTAGAA+GGG - chr1.4:8366943-8366962 None:intergenic 25.0%
!! GTTTAGTGAATTTTCTCAAT+TGG + chr1.4:8365670-8365689 MS.gene016002:intron 25.0%
!!! ATTTTTTGAATCTTGTGTCT+TGG - chr1.4:8366497-8366516 None:intergenic 25.0%
!!! GTTTTGTTTTTACGTATTAC+TGG + chr1.4:8366112-8366131 MS.gene016002:intron 25.0%
!!! TTGTTTTATTTCCGCAAATT+TGG + chr1.4:8364512-8364531 MS.gene016002:intron 25.0%
!!! TTTAAGTTTTTACAGAGACA+CGG - chr1.4:8364059-8364078 None:intergenic 25.0%
AAAACACAATCATGAGATGA+TGG + chr1.4:8366587-8366606 MS.gene016002:CDS 30.0%
ACGCAAAAGAAACAATTAGA+AGG - chr1.4:8366094-8366113 None:intergenic 30.0%
AGGTATAACAAGTCTATGAA+GGG + chr1.4:8366777-8366796 MS.gene016002:CDS 30.0%
AGTGAATATTTACCTGACAA+GGG - chr1.4:8364015-8364034 None:intergenic 30.0%
ATACGTAACTTCTTTCAGTA+TGG + chr1.4:8365714-8365733 MS.gene016002:intron 30.0%
ATTACGAAATTCTTTATCGG+TGG - chr1.4:8366331-8366350 None:intergenic 30.0%
ATTGAATGTAATTGTCGTTG+TGG + chr1.4:8364386-8364405 MS.gene016002:intron 30.0%
ATTTGCAATTGCAAAACTCA+AGG + chr1.4:8364542-8364561 MS.gene016002:intron 30.0%
CAAGGAAATTAAGAATGTTC+TGG + chr1.4:8365057-8365076 MS.gene016002:intron 30.0%
CAAGTTTGTAGGATGAATAT+TGG + chr1.4:8364823-8364842 MS.gene016002:intron 30.0%
GATGAATATTGACAGAATGT+AGG + chr1.4:8364721-8364740 MS.gene016002:intron 30.0%
GTACAACCAAATATAACACA+AGG - chr1.4:8364967-8364986 None:intergenic 30.0%
TAAATGAGAGTTGAAGATGA+CGG - chr1.4:8365951-8365970 None:intergenic 30.0%
TAGTGAATATTTACCTGACA+AGG - chr1.4:8364016-8364035 None:intergenic 30.0%
TAGTGACAAAATAGCACTAT+CGG - chr1.4:8365536-8365555 None:intergenic 30.0%
TCAAATATCACCAGTAACTT+TGG + chr1.4:8365292-8365311 MS.gene016002:intron 30.0%
TCAAGTATGTCAATTGATGT+TGG + chr1.4:8365762-8365781 MS.gene016002:intron 30.0%
TCATCTCTTCCTCATTTAAA+CGG - chr1.4:8366641-8366660 None:intergenic 30.0%
TCTGGCAAAATAGATATATC+TGG - chr1.4:8366855-8366874 None:intergenic 30.0%
TTTGCAATTGCAAAACTCAA+GGG + chr1.4:8364543-8364562 MS.gene016002:intron 30.0%
! AAAAAACCTTACCTTTTGCT+AGG - chr1.4:8364623-8364642 None:intergenic 30.0%
! AAAAACCTTACCTTTTGCTA+GGG - chr1.4:8364622-8364641 None:intergenic 30.0%
! ATTCTGAACCAATGTGTTTT+TGG - chr1.4:8364936-8364955 None:intergenic 30.0%
! ATTGTGTTTTCCACATACTA+CGG - chr1.4:8366577-8366596 None:intergenic 30.0%
! GAGAATTTGTTTCATCTAGA+AGG - chr1.4:8366944-8366963 None:intergenic 30.0%
! TATATCTATTTTGCCAGAGT+TGG + chr1.4:8366857-8366876 MS.gene016002:CDS 30.0%
! TTAAGTTTTTACAGAGACAC+GGG - chr1.4:8364058-8364077 None:intergenic 30.0%
! TTCTGAACCAATGTGTTTTT+GGG - chr1.4:8364935-8364954 None:intergenic 30.0%
! TTTGAGTTTATGTCAAACAC+TGG + chr1.4:8365898-8365917 MS.gene016002:intron 30.0%
! TTTTCGTGAATGCTGTTAAT+AGG - chr1.4:8365637-8365656 None:intergenic 30.0%
!! ATTTTAAAAAGGGTCCAGAT+GGG + chr1.4:8366161-8366180 MS.gene016002:intron 30.0%
AAATGAGAGTTGAAGATGAC+GGG - chr1.4:8365950-8365969 None:intergenic 35.0%
AACAATACCAAACCCTAACT+TGG - chr1.4:8366391-8366410 None:intergenic 35.0%
AACTCCTATGCCAAAATAAG+AGG - chr1.4:8365113-8365132 None:intergenic 35.0%
AGAGAAGGAGAAGGAAAATT+GGG + chr1.4:8367094-8367113 MS.gene016002:CDS 35.0%
AGATTTATAATGCACGTTCG+AGG + chr1.4:8366757-8366776 MS.gene016002:CDS 35.0%
AGTAAGTACACATTCTGAGT+TGG - chr1.4:8366187-8366206 None:intergenic 35.0%
AGTGACAAAATAGCACTATC+GGG - chr1.4:8365535-8365554 None:intergenic 35.0%
ATACTTGAATGCAAAAGGAG+TGG + chr1.4:8366447-8366466 MS.gene016002:CDS 35.0%
ATATCTGGTTGATCTTCCTT+TGG - chr1.4:8366840-8366859 None:intergenic 35.0%
CATGAACATGATACCATTTC+AGG + chr1.4:8366225-8366244 MS.gene016002:intron 35.0%
CGCTTATACTTGAATGCAAA+AGG + chr1.4:8366442-8366461 MS.gene016002:CDS 35.0%
CTGAAAGAAGTTACGTATCA+AGG - chr1.4:8365712-8365731 None:intergenic 35.0%
GAGGTATAACAAGTCTATGA+AGG + chr1.4:8366776-8366795 MS.gene016002:CDS 35.0%
TATTAGTAAACCTTCCGGTT+GGG + chr1.4:8365787-8365806 MS.gene016002:intron 35.0%
TATTGACAGAATGTAGGTTC+TGG + chr1.4:8364727-8364746 MS.gene016002:intron 35.0%
TGGTCTATTAGTAAACCTTC+CGG + chr1.4:8365782-8365801 MS.gene016002:intron 35.0%
! ACATGATACCATTTCAGGTA+TGG + chr1.4:8366230-8366249 MS.gene016002:intron 35.0%
! TATTGGAAGAGTGTAGATTG+TGG + chr1.4:8364840-8364859 MS.gene016002:intron 35.0%
! TCAACCAACACTTCAGATTT+TGG - chr1.4:8366804-8366823 None:intergenic 35.0%
!! CATTTTAAAAAGGGTCCAGA+TGG + chr1.4:8366160-8366179 MS.gene016002:intron 35.0%
!! TAACTGCAATCAGCTTGTTA+AGG + chr1.4:8365191-8365210 MS.gene016002:intron 35.0%
!! TCTGATCGATCCTCTTATTT+TGG + chr1.4:8365100-8365119 MS.gene016002:intron 35.0%
!!! ACATTTTGGGTTCGTGAATT+TGG + chr1.4:8365032-8365051 MS.gene016002:intron 35.0%
!!! CCTTGTTTGTTTTTTCTTGC+CGG + chr1.4:8364113-8364132 MS.gene016002:intron 35.0%
AAACGACACATATGCAGGAA+GGG - chr1.4:8364589-8364608 None:intergenic 40.0%
AAATAACCCCGCAATCTGAA+TGG - chr1.4:8366528-8366547 None:intergenic 40.0%
AAATCAAGAGACTCATCGAC+TGG - chr1.4:8366294-8366313 None:intergenic 40.0%
AAGAAAAGAAGAGCTGACGA+TGG + chr1.4:8366720-8366739 MS.gene016002:CDS 40.0%
AATAGCTTTCCCAGAAACGA+TGG + chr1.4:8367055-8367074 MS.gene016002:CDS 40.0%
AGAAAAGAAGAGCTGACGAT+GGG + chr1.4:8366721-8366740 MS.gene016002:CDS 40.0%
ATATTTGATCAGCGCGTTCA+TGG - chr1.4:8365280-8365299 None:intergenic 40.0%
ATTTACCTGACAAGGGTTGA+CGG - chr1.4:8364008-8364027 None:intergenic 40.0%
CAAAGAAACGACACATATGC+AGG - chr1.4:8364594-8364613 None:intergenic 40.0%
CAGAGAAGGAGAAGGAAAAT+TGG + chr1.4:8367093-8367112 MS.gene016002:CDS 40.0%
CCGGCAAGAAAAAACAAACA+AGG - chr1.4:8364116-8364135 None:intergenic 40.0%
CTATTAGTAAACCTTCCGGT+TGG + chr1.4:8365786-8365805 MS.gene016002:intron 40.0%
CTTTGTTCTACCCTAGCAAA+AGG + chr1.4:8364609-8364628 MS.gene016002:intron 40.0%
GGTATTTCACACATCCGAAT+TGG + chr1.4:8366917-8366936 MS.gene016002:intron 40.0%
TATTGCAGGCCGTTTAAATG+AGG + chr1.4:8366629-8366648 MS.gene016002:CDS 40.0%
TCATTTAAACGGCCTGCAAT+AGG - chr1.4:8366630-8366649 None:intergenic 40.0%
TGTAATTGTCGTTGTGGTGT+TGG + chr1.4:8364392-8364411 MS.gene016002:intron 40.0%
TTAGAAGAACAGCCTATTGC+AGG + chr1.4:8366615-8366634 MS.gene016002:CDS 40.0%
TTCATCTAGAAGGGCCAATT+CGG - chr1.4:8366934-8366953 None:intergenic 40.0%
TTCTACCCTAGCAAAAGGTA+AGG + chr1.4:8364614-8364633 MS.gene016002:intron 40.0%
! AGGTGAAACGAAACCGTTTT+AGG - chr1.4:8364084-8364103 None:intergenic 40.0%
! GGTGAAACGAAACCGTTTTA+GGG - chr1.4:8364083-8364102 None:intergenic 40.0%
! TGATACCATTTCAGGTATGG+AGG + chr1.4:8366233-8366252 MS.gene016002:intron 40.0%
!! GAAGTGTTGGTTGATGATGA+CGG + chr1.4:8366810-8366829 MS.gene016002:CDS 40.0%
!!! CGATCCTCTTATTTTGGCAT+AGG + chr1.4:8365106-8365125 MS.gene016002:intron 40.0%
!!! TGTTTGTTTTTTCTTGCCGG+TGG + chr1.4:8364116-8364135 MS.gene016002:intron 40.0%
CAATGTGGCTCCAAAGTTAC+TGG - chr1.4:8365305-8365324 None:intergenic 45.0%
GAAACGACACATATGCAGGA+AGG - chr1.4:8364590-8364609 None:intergenic 45.0%
GTGAGTGTCCATTCAGATTG+CGG + chr1.4:8366517-8366536 MS.gene016002:CDS 45.0%
TGAGTGTCCATTCAGATTGC+GGG + chr1.4:8366518-8366537 MS.gene016002:CDS 45.0%
TGGGAAGTTACCGTAGTATG+TGG + chr1.4:8366564-8366583 MS.gene016002:CDS 45.0%
TTAGGCTTCAAACCAGCAGA+GGG - chr1.4:8366261-8366280 None:intergenic 45.0%
TTGCATTGCCTGAACAGCTA+GGG + chr1.4:8365231-8365250 MS.gene016002:intron 45.0%
! GGGTCCAAAATCTGAAGTGT+TGG + chr1.4:8366797-8366816 MS.gene016002:CDS 45.0%
! GGGTTCGTGAATTTGGTTCA+AGG + chr1.4:8365039-8365058 MS.gene016002:intron 45.0%
! TGTCATTTCCCTAGCTGTTC+AGG - chr1.4:8365242-8365261 None:intergenic 45.0%
! TTCTGATGGAAGGGCATGTT+CGG - chr1.4:8364421-8364440 None:intergenic 45.0%
! TTTTCCTTCTCCTTCTCTGC+AGG - chr1.4:8367092-8367111 None:intergenic 45.0%
!!! ATTTTTTGCCCTCTGGCGTA+TGG + chr1.4:8366544-8366563 MS.gene016002:CDS 45.0%
!!! TACGGCATCGACTTTTCAAC+AGG - chr1.4:8365813-8365832 None:intergenic 45.0%
!!! TTTTTTGCCCTCTGGCGTAT+GGG + chr1.4:8366545-8366564 MS.gene016002:CDS 45.0%
ACCCTAACAGCTTCTTCCAC+CGG - chr1.4:8364135-8364154 None:intergenic 50.0%
ACCTGAATCGCTTCCAACTC+TGG - chr1.4:8366873-8366892 None:intergenic 50.0%
ATCGAGATGACCTGCTGAAG+TGG + chr1.4:8366349-8366368 MS.gene016002:CDS 50.0%
CACGGACACTTCTGATGGAA+GGG - chr1.4:8364430-8364449 None:intergenic 50.0%
CTTGCATTGCCTGAACAGCT+AGG + chr1.4:8365230-8365249 MS.gene016002:intron 50.0%
GAAGCAGCCAAGTTAGGGTT+TGG + chr1.4:8366381-8366400 MS.gene016002:CDS 50.0%
GAGGTGAAGCAGCCAAGTTA+GGG + chr1.4:8366376-8366395 MS.gene016002:CDS 50.0%
GAGTGTCCATTCAGATTGCG+GGG + chr1.4:8366519-8366538 MS.gene016002:CDS 50.0%
GGGATCCTCCATACCTGAAA+TGG - chr1.4:8366241-8366260 None:intergenic 50.0%
GTAACTTCCCATACGCCAGA+GGG - chr1.4:8366555-8366574 None:intergenic 50.0%
GTTAGGCTTCAAACCAGCAG+AGG - chr1.4:8366262-8366281 None:intergenic 50.0%
TACAGAGACACGGGAGAGAA+GGG - chr1.4:8364049-8364068 None:intergenic 50.0%
TCGAGATGACCTGCTGAAGT+GGG + chr1.4:8366350-8366369 MS.gene016002:CDS 50.0%
TGTCAGTGTCGTGTCGTGTT+CGG - chr1.4:8364331-8364350 None:intergenic 50.0%
TTACAGAGACACGGGAGAGA+AGG - chr1.4:8364050-8364069 None:intergenic 50.0%
TTACTCCAACCTCCGTAGCA+CGG - chr1.4:8364448-8364467 None:intergenic 50.0%
TTTCTCCGTCAACCCTTGTC+AGG + chr1.4:8364000-8364019 MS.gene016002:CDS 50.0%
! ACATTCTGAGTTGGCCCATC+TGG - chr1.4:8366178-8366197 None:intergenic 50.0%
! GACTTTTCAACAGGCCCAAC+CGG - chr1.4:8365804-8365823 None:intergenic 50.0%
! TCGACTGGTTCAGCACTGTT+AGG - chr1.4:8366279-8366298 None:intergenic 50.0%
!! CATCAGAAGTGTCCGTGCTA+CGG + chr1.4:8364433-8364452 MS.gene016002:intron 50.0%
!! TGATGATGACGGTGTGCCAA+AGG + chr1.4:8366821-8366840 MS.gene016002:CDS 50.0%
!!! CGGGGTTATTTTTTGCCCTC+TGG + chr1.4:8366537-8366556 MS.gene016002:CDS 50.0%
CGAGGTGAAGCAGCCAAGTT+AGG + chr1.4:8366375-8366394 MS.gene016002:CDS 55.0%
CGTAGCACGGACACTTCTGA+TGG - chr1.4:8364435-8364454 None:intergenic 55.0%
GACATGGCGCCATCGTTTCT+GGG - chr1.4:8367067-8367086 None:intergenic 55.0%
GCACGGACACTTCTGATGGA+AGG - chr1.4:8364431-8364450 None:intergenic 55.0%
GCCAGAGTTGGAAGCGATTC+AGG + chr1.4:8366869-8366888 MS.gene016002:CDS 55.0%
GCCGGTGGAAGAAGCTGTTA+GGG + chr1.4:8364131-8364150 MS.gene016002:intron 55.0%
GGTAACTTCCCATACGCCAG+AGG - chr1.4:8366556-8366575 None:intergenic 55.0%
TCCTCCTGCAGAGAAGGAGA+AGG + chr1.4:8367085-8367104 MS.gene016002:CDS 55.0%
TCCTTCTCCTTCTCTGCAGG+AGG - chr1.4:8367089-8367108 None:intergenic 55.0%
TCCTTCTCTGCAGGAGGACA+TGG - chr1.4:8367083-8367102 None:intergenic 55.0%
TGCCGGTGGAAGAAGCTGTT+AGG + chr1.4:8364130-8364149 MS.gene016002:intron 55.0%
TTTCAACAGGCCCAACCGGA+AGG - chr1.4:8365800-8365819 None:intergenic 55.0%
AGTGTCCGTGCTACGGAGGT+TGG + chr1.4:8364440-8364459 MS.gene016002:intron 60.0%
CACCTCGAACCCACTTCAGC+AGG - chr1.4:8366362-8366381 None:intergenic 60.0%
GAGACACGGGAGAGAAGGGA+AGG - chr1.4:8364045-8364064 None:intergenic 60.0%
GCCATGTCCTCCTGCAGAGA+AGG + chr1.4:8367079-8367098 MS.gene016002:CDS 60.0%
GGACATGGCGCCATCGTTTC+TGG - chr1.4:8367068-8367087 None:intergenic 60.0%
GGTATGGAGGATCCCTCTGC+TGG + chr1.4:8366246-8366265 MS.gene016002:intron 60.0%
! GACCTGCTGAAGTGGGTTCG+AGG + chr1.4:8366357-8366376 MS.gene016002:CDS 60.0%
!! CAGAAGTGTCCGTGCTACGG+AGG + chr1.4:8364436-8364455 MS.gene016002:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 8363979 8367148 8363979 ID=MS.gene016002
chr1.4 mRNA 8363979 8367148 8363979 ID=MS.gene016002.t1;Parent=MS.gene016002
chr1.4 exon 8363979 8364021 8363979 ID=MS.gene016002.t1.exon1;Parent=MS.gene016002.t1
chr1.4 CDS 8363979 8364021 8363979 ID=cds.MS.gene016002.t1;Parent=MS.gene016002.t1
chr1.4 exon 8366247 8366890 8366247 ID=MS.gene016002.t1.exon2;Parent=MS.gene016002.t1
chr1.4 CDS 8366247 8366890 8366247 ID=cds.MS.gene016002.t1;Parent=MS.gene016002.t1
chr1.4 exon 8366996 8367148 8366996 ID=MS.gene016002.t1.exon3;Parent=MS.gene016002.t1
chr1.4 CDS 8366996 8367148 8366996 ID=cds.MS.gene016002.t1;Parent=MS.gene016002.t1
Gene Sequence

>MS.gene016002

ATGACGGATCGACACAAACATTTTCTCCGTCAACCCTTGTCAGGTAAATATTCACTACTCGTTCCTTCCCTTCTCTCCCGTGTCTCTGTAAAAACTTAAATCCCTAAAACGGTTTCGTTTCACCTAAATTTACACCTTGTTTGTTTTTTCTTGCCGGTGGAAGAAGCTGTTAGGGTTTTTATCTTACTCGATTTTTCTAGATCTAAATGTTAGGGTTTTCAGTACATGCATTATCTGCTTTCATATCCAATGTAATTACTTTTCAGTTTGTTTTATTTTCATATATCATGATCTTAGTACTTCAATTTTGAAAATATTTCAAGAGGAGTATGAAGCACATACACTGACACCGAACACGACACGACACTGACATGTTAGTATCGTTCAATTTTTTAAAAAATTAATTAATTGAATGTAATTGTCGTTGTGGTGTTGGACGCCGAACATGCCCTTCCATCAGAAGTGTCCGTGCTACGGAGGTTGGAGTAATTCTCATATATTTTCTTTTTGAAATTCAAGTCGTGCTTTTTATTTTGTTTTATTTCCGCAAATTTGGTGTTAAGATTTGCAATTGCAAAACTCAAGGGTAAAATTTTGGGTTTCATTTCCCTTCCTGCATATGTGTCGTTTCTTTGTTCTACCCTAGCAAAAGGTAAGGTTTTTTTGTTTTTTTTGTTTTGTTGTATCTTATTATTCAAATCATTCTTTGTTTCAGACTCTGTTTTTATTATCAAGTTTGTTGGATGAATATTGACAGAATGTAGGTTCTGGCTGATATTTAGCTTTTGTTGTATCTTATTATTCATATTTTTCTTTGTTTTAGACTTCATGTGTTTTTTATTATCAAGTTTGTAGGATGAATATTGGAAGAGTGTAGATTGTGGCTGAGATTTAGCTCTGTTCTTGTATTTGTTCTTTAAACATGTGTAAAATAATTCTTCTTGTTAATTAAACCCAAAAACACATTGGTTCAGAATGTTATGATCCTTGTGTTATATTTGGTTGTACATTGTTCTTTTGTTCTAGTACAAGTCTTTAATTTATAAGACAATAACATTTTGGGTTCGTGAATTTGGTTCAAGGAAATTAAGAATGTTCTGGTAAATTATTTAGTTTTGGAGTCTGATCGATCCTCTTATTTTGGCATAGGAGTTAAGTGTGTAATTTTTTTATGCATAGAGATGAAGTCTTGAAACAAATCAACAAATTGGTTAACTGCAATCAGCTTGTTAAGGTGATATTATTAATTTGCTTGCATTGCCTGAACAGCTAGGGAAATGACATCAAGTGTCAATATTCCATGAACGCGCTGATCAAATATCACCAGTAACTTTGGAGCCACATTGAACACTGTATTTTTATTCTAAGTATTTGGAGAGAGAACTATGCATTTTTATAAGTGTGGAATCATATTTGCTTTGTATTTTTACTGTTTCATCATCGGAACTTCATTTTTACAAATGCAAAATGGGATGTGCTTTGTAATTTTATAAATGCAGGATATTAGAAAAGCAATATTTTATAGAATTTTAAAACAGGTTTCTAGTACTCAACCCGATAGTGCTATTTTGTCACTATTACTGTATAATTTTTATTTTATGTAAATTATTTTTCTTACATGTTTTTAGCTGTTGCATTTGCCAAATTTTAATTTGCCTATTAACAGCATTCACGAAAAAAGTTGATTTTCTGTTTAGTGAATTTTCTCAATTGGGTAAATGAATATGCAGCCTTGATACGTAACTTCTTTCAGTATGGATTTCATTATATGCAGAGAATGTTATCAAGTATGTCAATTGATGTTGGTCTATTAGTAAACCTTCCGGTTGGGCCTGTTGAAAAGTCGATGCCGTATGACTTGTAATTAACTTTGTAGTTATAACAGGAATATTAGCCAAATTTTGAGTGTTTATGTTATTTTTGAGTTTATGTCAAACACTGGAAAGTATATACATGATATATTTGAAACCCGTCATCTTCAACTCTCATTTAAAATCACTCTAAATAAAACCCTTATTTTACAAAATGTGTGTTTCATTACTCATTCCTATCATCCATTAATTATATTTGCACAATTTTCATTTGAAAGCAAATGAAACGTGACTCTAATTTCCTTCTAATTGTTTCTTTTGCGTTTTGTTTTTACGTATTACTGGTATCGTTTGAATAAGCCAATCTTTTCATTTTAAAAAGGGTCCAGATGGGCCAACTCAGAATGTGTACTTACTGTATAAGCCTATTTTTCTCATGAACATGATACCATTTCAGGTATGGAGGATCCCTCTGCTGGTTTGAAGCCTAACAGTGCTGAACCAGTCGATGAGTCTCTTGATTTCGCTAAACACTTTGCCACCGATAAAGAATTTCGTAATCGAGATGACCTGCTGAAGTGGGTTCGAGGTGAAGCAGCCAAGTTAGGGTTTGGTATTGTTATTTCAAAGTCAAATAATAGAGGAACACAAACGCTTATACTTGAATGCAAAAGGAGTGGTGTATATAAGAAGCAGTCGAAACGCCAAGACACAAGATTCAAAAAATGTGAGTGTCCATTCAGATTGCGGGGTTATTTTTTGCCCTCTGGCGTATGGGAAGTTACCGTAGTATGTGGAAAACACAATCATGAGATGATGGAAAATTTAGAAGAACAGCCTATTGCAGGCCGTTTAAATGAGGAAGAGATGAAACTCGTTCATGAGATGACAAATAACACTGTCCGTCCAAAAAATATTCTTATGACTTTGAAGAAAAGAAGAGCTGACGATGGGATTACTATCAAGCAGATTTATAATGCACGTTCGAGGTATAACAAGTCTATGAAGGGTCCAAAATCTGAAGTGTTGGTTGATGATGACGGTGTGCCAAAGGAAGATCAACCAGATATATCTATTTTGCCAGAGTTGGAAGCGATTCAGGTTTGATTCAATAGTAATTCTGTTCTGGTATTTCACACATCCGAATTGGCCCTTCTAGATGAAACAAATTCTCATTAAATTTTTTATTTTTTTTTTAATTTTCAGATTCGGTTTAACAATGCTGATTACAATACGAAGATACTTATTAAAGAGCAGCTGCATCAAATAGCTTTCCCAGAAACGATGGCGCCATGTCCTCCTGCAGAGAAGGAGAAGGAAAATTGGGACTTTTATGATTTAGAAACTTGTGAAATATGA

Protein sequence

>MS.gene016002.t1

MTDRHKHFLRQPLSGMEDPSAGLKPNSAEPVDESLDFAKHFATDKEFRNRDDLLKWVRGEAAKLGFGIVISKSNNRGTQTLILECKRSGVYKKQSKRQDTRFKKCECPFRLRGYFLPSGVWEVTVVCGKHNHEMMENLEEQPIAGRLNEEEMKLVHEMTNNTVRPKNILMTLKKRRADDGITIKQIYNARSRYNKSMKGPKSEVLVDDDGVPKEDQPDISILPELEAIQIRFNNADYNTKILIKEQLHQIAFPETMAPCPPAEKEKENWDFYDLETCEI