Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016002.t1 | XP_003588789.1 | 92.8 | 279 | 18 | 1 | 1 | 279 | 1 | 277 | 1.50E-146 | 528.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016002.t1 | G7I7I8 | 92.8 | 279 | 18 | 1 | 1 | 279 | 1 | 277 | 1.1e-146 | 528.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene016002.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016002.t1 | MTR_1g012760 | 92.832 | 279 | 18 | 1 | 1 | 279 | 1 | 277 | 0.0 | 538 |
MS.gene016002.t1 | MTR_1g012760 | 89.455 | 275 | 27 | 1 | 5 | 279 | 16 | 288 | 0.0 | 508 |
MS.gene016002.t1 | MTR_2g090505 | 39.773 | 176 | 100 | 2 | 35 | 204 | 83 | 258 | 6.93e-38 | 136 |
MS.gene016002.t1 | MTR_1g099140 | 44.242 | 165 | 86 | 2 | 40 | 198 | 88 | 252 | 1.81e-36 | 136 |
MS.gene016002.t1 | MTR_6g029530 | 41.243 | 177 | 94 | 3 | 30 | 196 | 493 | 669 | 2.80e-34 | 131 |
MS.gene016002.t1 | MTR_3g116710 | 40.678 | 177 | 96 | 4 | 26 | 194 | 67 | 242 | 1.11e-33 | 123 |
MS.gene016002.t1 | MTR_3g077875 | 35.795 | 176 | 106 | 3 | 35 | 204 | 78 | 252 | 4.15e-33 | 122 |
MS.gene016002.t1 | MTR_3g015530 | 39.490 | 157 | 91 | 2 | 32 | 184 | 46 | 202 | 5.35e-33 | 121 |
MS.gene016002.t1 | MTR_3g034840 | 39.490 | 157 | 88 | 3 | 24 | 174 | 57 | 212 | 5.78e-31 | 115 |
MS.gene016002.t1 | MTR_0599s0020 | 39.490 | 157 | 88 | 3 | 24 | 174 | 57 | 212 | 5.78e-31 | 115 |
MS.gene016002.t1 | MTR_3g072200 | 39.735 | 151 | 87 | 2 | 49 | 195 | 59 | 209 | 3.12e-30 | 119 |
MS.gene016002.t1 | MTR_6g464570 | 37.931 | 145 | 83 | 3 | 29 | 166 | 8 | 152 | 3.72e-28 | 106 |
MS.gene016002.t1 | MTR_5g046145 | 43.165 | 139 | 70 | 2 | 40 | 175 | 124 | 256 | 5.40e-28 | 110 |
MS.gene016002.t1 | MTR_4g119600 | 38.636 | 176 | 93 | 4 | 35 | 201 | 60 | 229 | 2.05e-27 | 108 |
MS.gene016002.t1 | MTR_5g006100 | 36.585 | 164 | 97 | 3 | 47 | 204 | 66 | 228 | 1.53e-26 | 108 |
MS.gene016002.t1 | MTR_6g075990 | 37.356 | 174 | 94 | 4 | 35 | 199 | 78 | 245 | 2.78e-26 | 103 |
MS.gene016002.t1 | MTR_0528s0010 | 42.105 | 114 | 66 | 0 | 91 | 204 | 6 | 119 | 6.26e-26 | 100 |
MS.gene016002.t1 | MTR_5g046160 | 38.509 | 161 | 75 | 5 | 50 | 204 | 55 | 197 | 4.59e-25 | 100 |
MS.gene016002.t1 | MTR_5g032220 | 34.682 | 173 | 97 | 2 | 35 | 204 | 71 | 230 | 6.81e-25 | 103 |
MS.gene016002.t1 | MTR_3g087440 | 38.028 | 142 | 81 | 3 | 41 | 176 | 84 | 224 | 3.79e-24 | 97.8 |
MS.gene016002.t1 | MTR_5g031650 | 39.333 | 150 | 76 | 4 | 35 | 175 | 82 | 225 | 6.82e-24 | 97.1 |
MS.gene016002.t1 | MTR_4g120790 | 32.571 | 175 | 89 | 2 | 31 | 204 | 60 | 206 | 7.11e-24 | 97.1 |
MS.gene016002.t1 | MTR_2g026585 | 30.178 | 169 | 90 | 2 | 32 | 199 | 60 | 201 | 1.04e-21 | 94.0 |
MS.gene016002.t1 | MTR_1g081740 | 31.646 | 158 | 80 | 2 | 32 | 188 | 59 | 189 | 3.25e-21 | 89.0 |
MS.gene016002.t1 | MTR_2g461140 | 33.962 | 159 | 72 | 3 | 45 | 197 | 51 | 182 | 4.55e-21 | 88.2 |
MS.gene016002.t1 | MTR_2g023130 | 34.132 | 167 | 67 | 3 | 41 | 204 | 30 | 156 | 6.53e-21 | 89.0 |
MS.gene016002.t1 | MTR_4g057300 | 38.281 | 128 | 75 | 2 | 81 | 204 | 2 | 129 | 1.24e-19 | 87.4 |
MS.gene016002.t1 | MTR_3g030230 | 41.346 | 104 | 57 | 2 | 77 | 176 | 68 | 171 | 1.97e-19 | 83.6 |
MS.gene016002.t1 | MTR_2g067930 | 35.294 | 153 | 89 | 3 | 57 | 199 | 44 | 196 | 3.60e-19 | 83.6 |
MS.gene016002.t1 | MTR_8g107490 | 33.333 | 177 | 107 | 5 | 9 | 175 | 7 | 182 | 5.23e-19 | 85.1 |
MS.gene016002.t1 | MTR_1g058140 | 37.615 | 109 | 67 | 1 | 92 | 199 | 89 | 197 | 9.80e-19 | 83.2 |
MS.gene016002.t1 | MTR_3g067290 | 35.252 | 139 | 85 | 3 | 56 | 190 | 83 | 220 | 1.38e-18 | 82.4 |
MS.gene016002.t1 | MTR_4g057975 | 32.099 | 162 | 98 | 5 | 21 | 176 | 43 | 198 | 1.95e-18 | 81.6 |
MS.gene016002.t1 | MTR_7g065910 | 35.385 | 130 | 69 | 3 | 81 | 204 | 34 | 154 | 2.80e-18 | 84.0 |
MS.gene016002.t1 | MTR_8g445570 | 35.849 | 106 | 66 | 2 | 100 | 204 | 6 | 110 | 5.04e-18 | 78.2 |
MS.gene016002.t1 | MTR_0156s0040 | 38.462 | 130 | 74 | 2 | 81 | 204 | 2 | 131 | 5.47e-18 | 80.1 |
MS.gene016002.t1 | MTR_7g050385 | 36.134 | 119 | 72 | 2 | 32 | 146 | 111 | 229 | 8.20e-18 | 80.9 |
MS.gene016002.t1 | MTR_3g462670 | 32.237 | 152 | 98 | 3 | 57 | 204 | 38 | 188 | 1.05e-17 | 80.1 |
MS.gene016002.t1 | MTR_5g079560 | 31.169 | 154 | 95 | 5 | 35 | 178 | 74 | 226 | 2.40e-17 | 79.7 |
MS.gene016002.t1 | MTR_4g100470 | 38.835 | 103 | 63 | 0 | 102 | 204 | 71 | 173 | 3.77e-17 | 78.2 |
MS.gene016002.t1 | MTR_1g098990 | 32.941 | 170 | 84 | 3 | 35 | 203 | 60 | 200 | 4.05e-17 | 79.7 |
MS.gene016002.t1 | MTR_7g106560 | 37.113 | 97 | 60 | 1 | 109 | 204 | 92 | 188 | 5.01e-17 | 77.8 |
MS.gene016002.t1 | MTR_0116s0050 | 30.899 | 178 | 89 | 4 | 20 | 196 | 27 | 171 | 6.75e-17 | 76.6 |
MS.gene016002.t1 | MTR_8g103800 | 30.220 | 182 | 101 | 4 | 21 | 201 | 43 | 199 | 1.47e-16 | 78.2 |
MS.gene016002.t1 | MTR_8g009330 | 35.915 | 142 | 71 | 5 | 25 | 157 | 76 | 206 | 2.37e-16 | 76.6 |
MS.gene016002.t1 | MTR_1g043440 | 36.170 | 141 | 69 | 4 | 121 | 255 | 176 | 301 | 4.41e-16 | 77.0 |
MS.gene016002.t1 | MTR_5g072970 | 38.298 | 94 | 58 | 0 | 111 | 204 | 33 | 126 | 9.18e-16 | 75.9 |
MS.gene016002.t1 | MTR_7g034570 | 38.739 | 111 | 62 | 2 | 81 | 190 | 76 | 181 | 5.96e-15 | 72.0 |
MS.gene016002.t1 | MTR_4g113170 | 37.079 | 89 | 55 | 1 | 110 | 197 | 74 | 162 | 7.20e-15 | 74.7 |
MS.gene016002.t1 | MTR_5g060540 | 29.333 | 150 | 85 | 1 | 35 | 184 | 42 | 170 | 1.03e-14 | 73.9 |
MS.gene016002.t1 | MTR_6g089230 | 34.211 | 114 | 56 | 3 | 92 | 204 | 38 | 133 | 1.27e-14 | 72.0 |
MS.gene016002.t1 | MTR_7g010970 | 40.217 | 92 | 48 | 3 | 84 | 169 | 5 | 95 | 2.99e-14 | 70.9 |
MS.gene016002.t1 | MTR_5g046245 | 39.175 | 97 | 58 | 1 | 109 | 204 | 6 | 102 | 8.32e-14 | 69.3 |
MS.gene016002.t1 | MTR_7g024830 | 40.845 | 71 | 42 | 0 | 134 | 204 | 1 | 71 | 9.31e-14 | 65.5 |
MS.gene016002.t1 | MTR_5g073000 | 36.000 | 100 | 64 | 0 | 109 | 208 | 109 | 208 | 9.50e-14 | 71.2 |
MS.gene016002.t1 | MTR_7g056020 | 25.405 | 185 | 112 | 3 | 25 | 204 | 373 | 536 | 9.93e-14 | 71.2 |
MS.gene016002.t1 | MTR_7g064870 | 38.938 | 113 | 61 | 3 | 46 | 152 | 54 | 164 | 2.38e-13 | 67.4 |
MS.gene016002.t1 | MTR_2g027000 | 42.466 | 73 | 42 | 0 | 121 | 193 | 101 | 173 | 2.87e-13 | 67.0 |
MS.gene016002.t1 | MTR_5g070810 | 38.000 | 100 | 55 | 3 | 60 | 153 | 14 | 112 | 3.07e-13 | 65.5 |
MS.gene016002.t1 | MTR_8g020433 | 31.933 | 119 | 80 | 1 | 92 | 209 | 70 | 188 | 4.82e-13 | 68.9 |
MS.gene016002.t1 | MTR_3g437000 | 37.500 | 88 | 52 | 1 | 32 | 116 | 38 | 125 | 9.49e-13 | 64.3 |
MS.gene016002.t1 | MTR_6g081290 | 42.708 | 96 | 51 | 2 | 81 | 173 | 3 | 97 | 1.06e-12 | 63.2 |
MS.gene016002.t1 | MTR_8g016360 | 31.618 | 136 | 85 | 3 | 16 | 146 | 1 | 133 | 1.47e-12 | 63.9 |
MS.gene016002.t1 | MTR_4g051638 | 30.579 | 121 | 80 | 2 | 32 | 148 | 120 | 240 | 1.61e-12 | 66.2 |
MS.gene016002.t1 | MTR_8g038805 | 39.744 | 78 | 43 | 2 | 83 | 156 | 55 | 132 | 4.25e-12 | 62.8 |
MS.gene016002.t1 | MTR_7g050365 | 35.246 | 122 | 53 | 4 | 86 | 204 | 20 | 118 | 7.35e-12 | 63.5 |
MS.gene016002.t1 | MTR_1g080040 | 35.789 | 95 | 55 | 2 | 81 | 169 | 1 | 95 | 8.62e-12 | 62.0 |
MS.gene016002.t1 | MTR_1g052890 | 37.037 | 81 | 51 | 0 | 121 | 201 | 13 | 93 | 2.79e-11 | 63.2 |
MS.gene016002.t1 | MTR_3g467720 | 33.010 | 103 | 56 | 1 | 88 | 190 | 49 | 138 | 5.71e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 57 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACCAACACTTCAGATTT+TGG | 0.127175 | 1.4:-8366801 | None:intergenic |
GGACATGGCGCCATCGTTTC+TGG | 0.166049 | 1.4:-8367065 | None:intergenic |
GCCAGAGTTGGAAGCGATTC+AGG | 0.243223 | 1.4:+8366869 | MS.gene016002:CDS |
CAGAGAAGGAGAAGGAAAAT+TGG | 0.276242 | 1.4:+8367093 | MS.gene016002:CDS |
CGAGGTGAAGCAGCCAAGTT+AGG | 0.314453 | 1.4:+8366375 | MS.gene016002:CDS |
TCATTTAAACGGCCTGCAAT+AGG | 0.361423 | 1.4:-8366627 | None:intergenic |
TTAGAAGAACAGCCTATTGC+AGG | 0.373206 | 1.4:+8366615 | MS.gene016002:CDS |
TCTGGCAAAATAGATATATC+TGG | 0.373242 | 1.4:-8366852 | None:intergenic |
TCGATTACGAAATTCTTTAT+CGG | 0.375032 | 1.4:-8366331 | None:intergenic |
TGAGTGTCCATTCAGATTGC+GGG | 0.385405 | 1.4:+8366518 | MS.gene016002:CDS |
ATATCTGGTTGATCTTCCTT+TGG | 0.393013 | 1.4:-8366837 | None:intergenic |
TCATCTCTTCCTCATTTAAA+CGG | 0.399399 | 1.4:-8366638 | None:intergenic |
TCGACTGGTTCAGCACTGTT+AGG | 0.410500 | 1.4:-8366276 | None:intergenic |
ACCTGAATCGCTTCCAACTC+TGG | 0.412695 | 1.4:-8366870 | None:intergenic |
TTTCTCCGTCAACCCTTGTC+AGG | 0.435693 | 1.4:+8364000 | MS.gene016002:CDS |
AACAATACCAAACCCTAACT+TGG | 0.442441 | 1.4:-8366388 | None:intergenic |
CGCTTATACTTGAATGCAAA+AGG | 0.445911 | 1.4:+8366442 | MS.gene016002:CDS |
GAAGCAGCCAAGTTAGGGTT+TGG | 0.454402 | 1.4:+8366381 | MS.gene016002:CDS |
GGTATGGAGGATCCCTCTGC+TGG | 0.464129 | 1.4:+8366246 | MS.gene016002:intron |
TCCTTCTCTGCAGGAGGACA+TGG | 0.465704 | 1.4:-8367080 | None:intergenic |
ATTTCAAAGTCAAATAATAG+AGG | 0.466691 | 1.4:+8366411 | MS.gene016002:CDS |
GACATGGCGCCATCGTTTCT+GGG | 0.467856 | 1.4:-8367064 | None:intergenic |
TCCTTCTCCTTCTCTGCAGG+AGG | 0.477318 | 1.4:-8367086 | None:intergenic |
AGAGAAGGAGAAGGAAAATT+GGG | 0.484008 | 1.4:+8367094 | MS.gene016002:CDS |
AAATAACCCCGCAATCTGAA+TGG | 0.485974 | 1.4:-8366525 | None:intergenic |
GAGGTATAACAAGTCTATGA+AGG | 0.500697 | 1.4:+8366776 | MS.gene016002:CDS |
CACCTCGAACCCACTTCAGC+AGG | 0.515291 | 1.4:-8366359 | None:intergenic |
AAAACACAATCATGAGATGA+TGG | 0.519225 | 1.4:+8366587 | MS.gene016002:CDS |
GAGGTGAAGCAGCCAAGTTA+GGG | 0.528533 | 1.4:+8366376 | MS.gene016002:CDS |
AGATTTATAATGCACGTTCG+AGG | 0.531682 | 1.4:+8366757 | MS.gene016002:CDS |
TATTGCAGGCCGTTTAAATG+AGG | 0.536027 | 1.4:+8366629 | MS.gene016002:CDS |
GCCATGTCCTCCTGCAGAGA+AGG | 0.538358 | 1.4:+8367079 | MS.gene016002:CDS |
ATTTACCTGACAAGGGTTGA+CGG | 0.539125 | 1.4:-8364005 | None:intergenic |
TAGTGAATATTTACCTGACA+AGG | 0.545419 | 1.4:-8364013 | None:intergenic |
ATCGAGATGACCTGCTGAAG+TGG | 0.550843 | 1.4:+8366349 | MS.gene016002:CDS |
ATTACGAAATTCTTTATCGG+TGG | 0.564422 | 1.4:-8366328 | None:intergenic |
TGGGAAGTTACCGTAGTATG+TGG | 0.565876 | 1.4:+8366564 | MS.gene016002:CDS |
GACCTGCTGAAGTGGGTTCG+AGG | 0.578355 | 1.4:+8366357 | MS.gene016002:CDS |
GTGAGTGTCCATTCAGATTG+CGG | 0.585943 | 1.4:+8366517 | MS.gene016002:CDS |
AAATCAAGAGACTCATCGAC+TGG | 0.594128 | 1.4:-8366291 | None:intergenic |
AGAAAAGAAGAGCTGACGAT+GGG | 0.596743 | 1.4:+8366721 | MS.gene016002:CDS |
AAGAAAAGAAGAGCTGACGA+TGG | 0.604104 | 1.4:+8366720 | MS.gene016002:CDS |
AGGTATAACAAGTCTATGAA+GGG | 0.614739 | 1.4:+8366777 | MS.gene016002:CDS |
GGTAACTTCCCATACGCCAG+AGG | 0.621236 | 1.4:-8366553 | None:intergenic |
TGATGATGACGGTGTGCCAA+AGG | 0.622138 | 1.4:+8366821 | MS.gene016002:CDS |
TGATACCATTTCAGGTATGG+AGG | 0.622154 | 1.4:+8366233 | MS.gene016002:intron |
TCCTCCTGCAGAGAAGGAGA+AGG | 0.625108 | 1.4:+8367085 | MS.gene016002:CDS |
TCGAGATGACCTGCTGAAGT+GGG | 0.628333 | 1.4:+8366350 | MS.gene016002:CDS |
TTAGGCTTCAAACCAGCAGA+GGG | 0.633057 | 1.4:-8366258 | None:intergenic |
GGGTCCAAAATCTGAAGTGT+TGG | 0.635922 | 1.4:+8366797 | MS.gene016002:CDS |
ATACTTGAATGCAAAAGGAG+TGG | 0.641681 | 1.4:+8366447 | MS.gene016002:CDS |
GTAACTTCCCATACGCCAGA+GGG | 0.653240 | 1.4:-8366552 | None:intergenic |
AATAGCTTTCCCAGAAACGA+TGG | 0.655369 | 1.4:+8367055 | MS.gene016002:CDS |
AGTGAATATTTACCTGACAA+GGG | 0.658458 | 1.4:-8364012 | None:intergenic |
GAGTGTCCATTCAGATTGCG+GGG | 0.660517 | 1.4:+8366519 | MS.gene016002:CDS |
GTTAGGCTTCAAACCAGCAG+AGG | 0.669794 | 1.4:-8366259 | None:intergenic |
GAAGTGTTGGTTGATGATGA+CGG | 0.720616 | 1.4:+8366810 | MS.gene016002:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTATAGAATTTTAAAAC+AGG | + | chr1.4:8365495-8365514 | MS.gene016002:intron | 10.0% |
!!! | TTTTTTTTAATTTTCAGATT+CGG | + | chr1.4:8366979-8366998 | MS.gene016002:intron | 10.0% |
!! | AATTGTGCAAATATAATTAA+TGG | - | chr1.4:8366036-8366055 | None:intergenic | 15.0% |
!! | TTAATAGGCAAATTAAAATT+TGG | - | chr1.4:8365622-8365641 | None:intergenic | 15.0% |
!!! | AAAGTCATAAGAATATTTTT+TGG | - | chr1.4:8366699-8366718 | None:intergenic | 15.0% |
!!! | AAATATAATTAATGGATGAT+AGG | - | chr1.4:8366028-8366047 | None:intergenic | 15.0% |
!!! | AATTTTGAAAATATTTCAAG+AGG | + | chr1.4:8364282-8364301 | MS.gene016002:intron | 15.0% |
!!! | CAATCTTTTCATTTTAAAAA+GGG | + | chr1.4:8366151-8366170 | MS.gene016002:intron | 15.0% |
!!! | GTATTTTTATTCTAAGTATT+TGG | + | chr1.4:8365331-8365350 | MS.gene016002:intron | 15.0% |
!!! | TTATAAGACAATAACATTTT+GGG | + | chr1.4:8365019-8365038 | MS.gene016002:intron | 15.0% |
!!! | TTTATAAGACAATAACATTT+TGG | + | chr1.4:8365018-8365037 | MS.gene016002:intron | 15.0% |
!!! | TTTTTTATTATCAAGTTTGT+AGG | + | chr1.4:8364812-8364831 | MS.gene016002:intron | 15.0% |
!! | AAAAACTTAAATCCCTAAAA+CGG | + | chr1.4:8364068-8364087 | MS.gene016002:intron | 20.0% |
!! | AAACTGAAAAGTAATTACAT+TGG | - | chr1.4:8364228-8364247 | None:intergenic | 20.0% |
!! | AAAGTTAATTACAAGTCATA+CGG | - | chr1.4:8365831-8365850 | None:intergenic | 20.0% |
!! | ATTAACTTTGTAGTTATAAC+AGG | + | chr1.4:8365842-8365861 | MS.gene016002:intron | 20.0% |
!! | ATTTCAAAGTCAAATAATAG+AGG | + | chr1.4:8366411-8366430 | MS.gene016002:CDS | 20.0% |
!! | TAACATAAACACTCAAAATT+TGG | - | chr1.4:8365876-8365895 | None:intergenic | 20.0% |
!!! | AACACACATTTTGTAAAATA+AGG | - | chr1.4:8365993-8366012 | None:intergenic | 20.0% |
!!! | ACACACATTTTGTAAAATAA+GGG | - | chr1.4:8365992-8366011 | None:intergenic | 20.0% |
!!! | CATTTTTACAAATGCAAAAT+GGG | + | chr1.4:8365428-8365447 | MS.gene016002:intron | 20.0% |
!!! | CCAATCTTTTCATTTTAAAA+AGG | + | chr1.4:8366150-8366169 | MS.gene016002:intron | 20.0% |
!!! | CCTTTTTAAAATGAAAAGAT+TGG | - | chr1.4:8366153-8366172 | None:intergenic | 20.0% |
!!! | CTTTGTAATTTTATAAATGC+AGG | + | chr1.4:8365456-8365475 | MS.gene016002:intron | 20.0% |
!!! | GTTTTTATTATCAAGTTTGT+TGG | + | chr1.4:8364699-8364718 | MS.gene016002:intron | 20.0% |
!!! | TATTTTTACTGTTTCATCAT+CGG | + | chr1.4:8365400-8365419 | MS.gene016002:intron | 20.0% |
!!! | TCATAAGAATATTTTTTGGA+CGG | - | chr1.4:8366695-8366714 | None:intergenic | 20.0% |
!!! | TCATTTTTACAAATGCAAAA+TGG | + | chr1.4:8365427-8365446 | MS.gene016002:intron | 20.0% |
!!! | TCTGGTAAATTATTTAGTTT+TGG | + | chr1.4:8365075-8365094 | MS.gene016002:intron | 20.0% |
!!! | TTTAGTGAATTTTCTCAATT+GGG | + | chr1.4:8365671-8365690 | MS.gene016002:intron | 20.0% |
!!! | TTTTCTAGATCTAAATGTTA+GGG | + | chr1.4:8364171-8364190 | MS.gene016002:intron | 20.0% |
!!! | TTTTTCTAGATCTAAATGTT+AGG | + | chr1.4:8364170-8364189 | MS.gene016002:intron | 20.0% |
! | AAATCTTAACACCAAATTTG+CGG | - | chr1.4:8364526-8364545 | None:intergenic | 25.0% |
! | AACAAACAAGGTGTAAATTT+AGG | - | chr1.4:8364104-8364123 | None:intergenic | 25.0% |
! | AATTAAACCCAAAAACACAT+TGG | + | chr1.4:8364925-8364944 | MS.gene016002:intron | 25.0% |
! | ATCATGTTCATGAGAAAAAT+AGG | - | chr1.4:8366217-8366236 | None:intergenic | 25.0% |
! | ATTCAATAGTAATTCTGTTC+TGG | + | chr1.4:8366896-8366915 | MS.gene016002:intron | 25.0% |
! | CTTGAAACAAATCAACAAAT+TGG | + | chr1.4:8365167-8365186 | MS.gene016002:intron | 25.0% |
! | TAAAAATACAGTGTTCAATG+TGG | - | chr1.4:8365320-8365339 | None:intergenic | 25.0% |
! | TATGATCCTTGTGTTATATT+TGG | + | chr1.4:8364958-8364977 | MS.gene016002:intron | 25.0% |
! | TCGATTACGAAATTCTTTAT+CGG | - | chr1.4:8366334-8366353 | None:intergenic | 25.0% |
!! | AAAACTCAAGGGTAAAATTT+TGG | + | chr1.4:8364554-8364573 | MS.gene016002:intron | 25.0% |
!! | AAACTCAAGGGTAAAATTTT+GGG | + | chr1.4:8364555-8364574 | MS.gene016002:intron | 25.0% |
!! | ACTATGCATTTTTATAAGTG+TGG | + | chr1.4:8365361-8365380 | MS.gene016002:intron | 25.0% |
!! | AGAATTTGTTTCATCTAGAA+GGG | - | chr1.4:8366943-8366962 | None:intergenic | 25.0% |
!! | GTTTAGTGAATTTTCTCAAT+TGG | + | chr1.4:8365670-8365689 | MS.gene016002:intron | 25.0% |
!!! | ATTTTTTGAATCTTGTGTCT+TGG | - | chr1.4:8366497-8366516 | None:intergenic | 25.0% |
!!! | GTTTTGTTTTTACGTATTAC+TGG | + | chr1.4:8366112-8366131 | MS.gene016002:intron | 25.0% |
!!! | TTGTTTTATTTCCGCAAATT+TGG | + | chr1.4:8364512-8364531 | MS.gene016002:intron | 25.0% |
!!! | TTTAAGTTTTTACAGAGACA+CGG | - | chr1.4:8364059-8364078 | None:intergenic | 25.0% |
AAAACACAATCATGAGATGA+TGG | + | chr1.4:8366587-8366606 | MS.gene016002:CDS | 30.0% | |
ACGCAAAAGAAACAATTAGA+AGG | - | chr1.4:8366094-8366113 | None:intergenic | 30.0% | |
AGGTATAACAAGTCTATGAA+GGG | + | chr1.4:8366777-8366796 | MS.gene016002:CDS | 30.0% | |
AGTGAATATTTACCTGACAA+GGG | - | chr1.4:8364015-8364034 | None:intergenic | 30.0% | |
ATACGTAACTTCTTTCAGTA+TGG | + | chr1.4:8365714-8365733 | MS.gene016002:intron | 30.0% | |
ATTACGAAATTCTTTATCGG+TGG | - | chr1.4:8366331-8366350 | None:intergenic | 30.0% | |
ATTGAATGTAATTGTCGTTG+TGG | + | chr1.4:8364386-8364405 | MS.gene016002:intron | 30.0% | |
ATTTGCAATTGCAAAACTCA+AGG | + | chr1.4:8364542-8364561 | MS.gene016002:intron | 30.0% | |
CAAGGAAATTAAGAATGTTC+TGG | + | chr1.4:8365057-8365076 | MS.gene016002:intron | 30.0% | |
CAAGTTTGTAGGATGAATAT+TGG | + | chr1.4:8364823-8364842 | MS.gene016002:intron | 30.0% | |
GATGAATATTGACAGAATGT+AGG | + | chr1.4:8364721-8364740 | MS.gene016002:intron | 30.0% | |
GTACAACCAAATATAACACA+AGG | - | chr1.4:8364967-8364986 | None:intergenic | 30.0% | |
TAAATGAGAGTTGAAGATGA+CGG | - | chr1.4:8365951-8365970 | None:intergenic | 30.0% | |
TAGTGAATATTTACCTGACA+AGG | - | chr1.4:8364016-8364035 | None:intergenic | 30.0% | |
TAGTGACAAAATAGCACTAT+CGG | - | chr1.4:8365536-8365555 | None:intergenic | 30.0% | |
TCAAATATCACCAGTAACTT+TGG | + | chr1.4:8365292-8365311 | MS.gene016002:intron | 30.0% | |
TCAAGTATGTCAATTGATGT+TGG | + | chr1.4:8365762-8365781 | MS.gene016002:intron | 30.0% | |
TCATCTCTTCCTCATTTAAA+CGG | - | chr1.4:8366641-8366660 | None:intergenic | 30.0% | |
TCTGGCAAAATAGATATATC+TGG | - | chr1.4:8366855-8366874 | None:intergenic | 30.0% | |
TTTGCAATTGCAAAACTCAA+GGG | + | chr1.4:8364543-8364562 | MS.gene016002:intron | 30.0% | |
! | AAAAAACCTTACCTTTTGCT+AGG | - | chr1.4:8364623-8364642 | None:intergenic | 30.0% |
! | AAAAACCTTACCTTTTGCTA+GGG | - | chr1.4:8364622-8364641 | None:intergenic | 30.0% |
! | ATTCTGAACCAATGTGTTTT+TGG | - | chr1.4:8364936-8364955 | None:intergenic | 30.0% |
! | ATTGTGTTTTCCACATACTA+CGG | - | chr1.4:8366577-8366596 | None:intergenic | 30.0% |
! | GAGAATTTGTTTCATCTAGA+AGG | - | chr1.4:8366944-8366963 | None:intergenic | 30.0% |
! | TATATCTATTTTGCCAGAGT+TGG | + | chr1.4:8366857-8366876 | MS.gene016002:CDS | 30.0% |
! | TTAAGTTTTTACAGAGACAC+GGG | - | chr1.4:8364058-8364077 | None:intergenic | 30.0% |
! | TTCTGAACCAATGTGTTTTT+GGG | - | chr1.4:8364935-8364954 | None:intergenic | 30.0% |
! | TTTGAGTTTATGTCAAACAC+TGG | + | chr1.4:8365898-8365917 | MS.gene016002:intron | 30.0% |
! | TTTTCGTGAATGCTGTTAAT+AGG | - | chr1.4:8365637-8365656 | None:intergenic | 30.0% |
!! | ATTTTAAAAAGGGTCCAGAT+GGG | + | chr1.4:8366161-8366180 | MS.gene016002:intron | 30.0% |
AAATGAGAGTTGAAGATGAC+GGG | - | chr1.4:8365950-8365969 | None:intergenic | 35.0% | |
AACAATACCAAACCCTAACT+TGG | - | chr1.4:8366391-8366410 | None:intergenic | 35.0% | |
AACTCCTATGCCAAAATAAG+AGG | - | chr1.4:8365113-8365132 | None:intergenic | 35.0% | |
AGAGAAGGAGAAGGAAAATT+GGG | + | chr1.4:8367094-8367113 | MS.gene016002:CDS | 35.0% | |
AGATTTATAATGCACGTTCG+AGG | + | chr1.4:8366757-8366776 | MS.gene016002:CDS | 35.0% | |
AGTAAGTACACATTCTGAGT+TGG | - | chr1.4:8366187-8366206 | None:intergenic | 35.0% | |
AGTGACAAAATAGCACTATC+GGG | - | chr1.4:8365535-8365554 | None:intergenic | 35.0% | |
ATACTTGAATGCAAAAGGAG+TGG | + | chr1.4:8366447-8366466 | MS.gene016002:CDS | 35.0% | |
ATATCTGGTTGATCTTCCTT+TGG | - | chr1.4:8366840-8366859 | None:intergenic | 35.0% | |
CATGAACATGATACCATTTC+AGG | + | chr1.4:8366225-8366244 | MS.gene016002:intron | 35.0% | |
CGCTTATACTTGAATGCAAA+AGG | + | chr1.4:8366442-8366461 | MS.gene016002:CDS | 35.0% | |
CTGAAAGAAGTTACGTATCA+AGG | - | chr1.4:8365712-8365731 | None:intergenic | 35.0% | |
GAGGTATAACAAGTCTATGA+AGG | + | chr1.4:8366776-8366795 | MS.gene016002:CDS | 35.0% | |
TATTAGTAAACCTTCCGGTT+GGG | + | chr1.4:8365787-8365806 | MS.gene016002:intron | 35.0% | |
TATTGACAGAATGTAGGTTC+TGG | + | chr1.4:8364727-8364746 | MS.gene016002:intron | 35.0% | |
TGGTCTATTAGTAAACCTTC+CGG | + | chr1.4:8365782-8365801 | MS.gene016002:intron | 35.0% | |
! | ACATGATACCATTTCAGGTA+TGG | + | chr1.4:8366230-8366249 | MS.gene016002:intron | 35.0% |
! | TATTGGAAGAGTGTAGATTG+TGG | + | chr1.4:8364840-8364859 | MS.gene016002:intron | 35.0% |
! | TCAACCAACACTTCAGATTT+TGG | - | chr1.4:8366804-8366823 | None:intergenic | 35.0% |
!! | CATTTTAAAAAGGGTCCAGA+TGG | + | chr1.4:8366160-8366179 | MS.gene016002:intron | 35.0% |
!! | TAACTGCAATCAGCTTGTTA+AGG | + | chr1.4:8365191-8365210 | MS.gene016002:intron | 35.0% |
!! | TCTGATCGATCCTCTTATTT+TGG | + | chr1.4:8365100-8365119 | MS.gene016002:intron | 35.0% |
!!! | ACATTTTGGGTTCGTGAATT+TGG | + | chr1.4:8365032-8365051 | MS.gene016002:intron | 35.0% |
!!! | CCTTGTTTGTTTTTTCTTGC+CGG | + | chr1.4:8364113-8364132 | MS.gene016002:intron | 35.0% |
AAACGACACATATGCAGGAA+GGG | - | chr1.4:8364589-8364608 | None:intergenic | 40.0% | |
AAATAACCCCGCAATCTGAA+TGG | - | chr1.4:8366528-8366547 | None:intergenic | 40.0% | |
AAATCAAGAGACTCATCGAC+TGG | - | chr1.4:8366294-8366313 | None:intergenic | 40.0% | |
AAGAAAAGAAGAGCTGACGA+TGG | + | chr1.4:8366720-8366739 | MS.gene016002:CDS | 40.0% | |
AATAGCTTTCCCAGAAACGA+TGG | + | chr1.4:8367055-8367074 | MS.gene016002:CDS | 40.0% | |
AGAAAAGAAGAGCTGACGAT+GGG | + | chr1.4:8366721-8366740 | MS.gene016002:CDS | 40.0% | |
ATATTTGATCAGCGCGTTCA+TGG | - | chr1.4:8365280-8365299 | None:intergenic | 40.0% | |
ATTTACCTGACAAGGGTTGA+CGG | - | chr1.4:8364008-8364027 | None:intergenic | 40.0% | |
CAAAGAAACGACACATATGC+AGG | - | chr1.4:8364594-8364613 | None:intergenic | 40.0% | |
CAGAGAAGGAGAAGGAAAAT+TGG | + | chr1.4:8367093-8367112 | MS.gene016002:CDS | 40.0% | |
CCGGCAAGAAAAAACAAACA+AGG | - | chr1.4:8364116-8364135 | None:intergenic | 40.0% | |
CTATTAGTAAACCTTCCGGT+TGG | + | chr1.4:8365786-8365805 | MS.gene016002:intron | 40.0% | |
CTTTGTTCTACCCTAGCAAA+AGG | + | chr1.4:8364609-8364628 | MS.gene016002:intron | 40.0% | |
GGTATTTCACACATCCGAAT+TGG | + | chr1.4:8366917-8366936 | MS.gene016002:intron | 40.0% | |
TATTGCAGGCCGTTTAAATG+AGG | + | chr1.4:8366629-8366648 | MS.gene016002:CDS | 40.0% | |
TCATTTAAACGGCCTGCAAT+AGG | - | chr1.4:8366630-8366649 | None:intergenic | 40.0% | |
TGTAATTGTCGTTGTGGTGT+TGG | + | chr1.4:8364392-8364411 | MS.gene016002:intron | 40.0% | |
TTAGAAGAACAGCCTATTGC+AGG | + | chr1.4:8366615-8366634 | MS.gene016002:CDS | 40.0% | |
TTCATCTAGAAGGGCCAATT+CGG | - | chr1.4:8366934-8366953 | None:intergenic | 40.0% | |
TTCTACCCTAGCAAAAGGTA+AGG | + | chr1.4:8364614-8364633 | MS.gene016002:intron | 40.0% | |
! | AGGTGAAACGAAACCGTTTT+AGG | - | chr1.4:8364084-8364103 | None:intergenic | 40.0% |
! | GGTGAAACGAAACCGTTTTA+GGG | - | chr1.4:8364083-8364102 | None:intergenic | 40.0% |
! | TGATACCATTTCAGGTATGG+AGG | + | chr1.4:8366233-8366252 | MS.gene016002:intron | 40.0% |
!! | GAAGTGTTGGTTGATGATGA+CGG | + | chr1.4:8366810-8366829 | MS.gene016002:CDS | 40.0% |
!!! | CGATCCTCTTATTTTGGCAT+AGG | + | chr1.4:8365106-8365125 | MS.gene016002:intron | 40.0% |
!!! | TGTTTGTTTTTTCTTGCCGG+TGG | + | chr1.4:8364116-8364135 | MS.gene016002:intron | 40.0% |
CAATGTGGCTCCAAAGTTAC+TGG | - | chr1.4:8365305-8365324 | None:intergenic | 45.0% | |
GAAACGACACATATGCAGGA+AGG | - | chr1.4:8364590-8364609 | None:intergenic | 45.0% | |
GTGAGTGTCCATTCAGATTG+CGG | + | chr1.4:8366517-8366536 | MS.gene016002:CDS | 45.0% | |
TGAGTGTCCATTCAGATTGC+GGG | + | chr1.4:8366518-8366537 | MS.gene016002:CDS | 45.0% | |
TGGGAAGTTACCGTAGTATG+TGG | + | chr1.4:8366564-8366583 | MS.gene016002:CDS | 45.0% | |
TTAGGCTTCAAACCAGCAGA+GGG | - | chr1.4:8366261-8366280 | None:intergenic | 45.0% | |
TTGCATTGCCTGAACAGCTA+GGG | + | chr1.4:8365231-8365250 | MS.gene016002:intron | 45.0% | |
! | GGGTCCAAAATCTGAAGTGT+TGG | + | chr1.4:8366797-8366816 | MS.gene016002:CDS | 45.0% |
! | GGGTTCGTGAATTTGGTTCA+AGG | + | chr1.4:8365039-8365058 | MS.gene016002:intron | 45.0% |
! | TGTCATTTCCCTAGCTGTTC+AGG | - | chr1.4:8365242-8365261 | None:intergenic | 45.0% |
! | TTCTGATGGAAGGGCATGTT+CGG | - | chr1.4:8364421-8364440 | None:intergenic | 45.0% |
! | TTTTCCTTCTCCTTCTCTGC+AGG | - | chr1.4:8367092-8367111 | None:intergenic | 45.0% |
!!! | ATTTTTTGCCCTCTGGCGTA+TGG | + | chr1.4:8366544-8366563 | MS.gene016002:CDS | 45.0% |
!!! | TACGGCATCGACTTTTCAAC+AGG | - | chr1.4:8365813-8365832 | None:intergenic | 45.0% |
!!! | TTTTTTGCCCTCTGGCGTAT+GGG | + | chr1.4:8366545-8366564 | MS.gene016002:CDS | 45.0% |
ACCCTAACAGCTTCTTCCAC+CGG | - | chr1.4:8364135-8364154 | None:intergenic | 50.0% | |
ACCTGAATCGCTTCCAACTC+TGG | - | chr1.4:8366873-8366892 | None:intergenic | 50.0% | |
ATCGAGATGACCTGCTGAAG+TGG | + | chr1.4:8366349-8366368 | MS.gene016002:CDS | 50.0% | |
CACGGACACTTCTGATGGAA+GGG | - | chr1.4:8364430-8364449 | None:intergenic | 50.0% | |
CTTGCATTGCCTGAACAGCT+AGG | + | chr1.4:8365230-8365249 | MS.gene016002:intron | 50.0% | |
GAAGCAGCCAAGTTAGGGTT+TGG | + | chr1.4:8366381-8366400 | MS.gene016002:CDS | 50.0% | |
GAGGTGAAGCAGCCAAGTTA+GGG | + | chr1.4:8366376-8366395 | MS.gene016002:CDS | 50.0% | |
GAGTGTCCATTCAGATTGCG+GGG | + | chr1.4:8366519-8366538 | MS.gene016002:CDS | 50.0% | |
GGGATCCTCCATACCTGAAA+TGG | - | chr1.4:8366241-8366260 | None:intergenic | 50.0% | |
GTAACTTCCCATACGCCAGA+GGG | - | chr1.4:8366555-8366574 | None:intergenic | 50.0% | |
GTTAGGCTTCAAACCAGCAG+AGG | - | chr1.4:8366262-8366281 | None:intergenic | 50.0% | |
TACAGAGACACGGGAGAGAA+GGG | - | chr1.4:8364049-8364068 | None:intergenic | 50.0% | |
TCGAGATGACCTGCTGAAGT+GGG | + | chr1.4:8366350-8366369 | MS.gene016002:CDS | 50.0% | |
TGTCAGTGTCGTGTCGTGTT+CGG | - | chr1.4:8364331-8364350 | None:intergenic | 50.0% | |
TTACAGAGACACGGGAGAGA+AGG | - | chr1.4:8364050-8364069 | None:intergenic | 50.0% | |
TTACTCCAACCTCCGTAGCA+CGG | - | chr1.4:8364448-8364467 | None:intergenic | 50.0% | |
TTTCTCCGTCAACCCTTGTC+AGG | + | chr1.4:8364000-8364019 | MS.gene016002:CDS | 50.0% | |
! | ACATTCTGAGTTGGCCCATC+TGG | - | chr1.4:8366178-8366197 | None:intergenic | 50.0% |
! | GACTTTTCAACAGGCCCAAC+CGG | - | chr1.4:8365804-8365823 | None:intergenic | 50.0% |
! | TCGACTGGTTCAGCACTGTT+AGG | - | chr1.4:8366279-8366298 | None:intergenic | 50.0% |
!! | CATCAGAAGTGTCCGTGCTA+CGG | + | chr1.4:8364433-8364452 | MS.gene016002:intron | 50.0% |
!! | TGATGATGACGGTGTGCCAA+AGG | + | chr1.4:8366821-8366840 | MS.gene016002:CDS | 50.0% |
!!! | CGGGGTTATTTTTTGCCCTC+TGG | + | chr1.4:8366537-8366556 | MS.gene016002:CDS | 50.0% |
CGAGGTGAAGCAGCCAAGTT+AGG | + | chr1.4:8366375-8366394 | MS.gene016002:CDS | 55.0% | |
CGTAGCACGGACACTTCTGA+TGG | - | chr1.4:8364435-8364454 | None:intergenic | 55.0% | |
GACATGGCGCCATCGTTTCT+GGG | - | chr1.4:8367067-8367086 | None:intergenic | 55.0% | |
GCACGGACACTTCTGATGGA+AGG | - | chr1.4:8364431-8364450 | None:intergenic | 55.0% | |
GCCAGAGTTGGAAGCGATTC+AGG | + | chr1.4:8366869-8366888 | MS.gene016002:CDS | 55.0% | |
GCCGGTGGAAGAAGCTGTTA+GGG | + | chr1.4:8364131-8364150 | MS.gene016002:intron | 55.0% | |
GGTAACTTCCCATACGCCAG+AGG | - | chr1.4:8366556-8366575 | None:intergenic | 55.0% | |
TCCTCCTGCAGAGAAGGAGA+AGG | + | chr1.4:8367085-8367104 | MS.gene016002:CDS | 55.0% | |
TCCTTCTCCTTCTCTGCAGG+AGG | - | chr1.4:8367089-8367108 | None:intergenic | 55.0% | |
TCCTTCTCTGCAGGAGGACA+TGG | - | chr1.4:8367083-8367102 | None:intergenic | 55.0% | |
TGCCGGTGGAAGAAGCTGTT+AGG | + | chr1.4:8364130-8364149 | MS.gene016002:intron | 55.0% | |
TTTCAACAGGCCCAACCGGA+AGG | - | chr1.4:8365800-8365819 | None:intergenic | 55.0% | |
AGTGTCCGTGCTACGGAGGT+TGG | + | chr1.4:8364440-8364459 | MS.gene016002:intron | 60.0% | |
CACCTCGAACCCACTTCAGC+AGG | - | chr1.4:8366362-8366381 | None:intergenic | 60.0% | |
GAGACACGGGAGAGAAGGGA+AGG | - | chr1.4:8364045-8364064 | None:intergenic | 60.0% | |
GCCATGTCCTCCTGCAGAGA+AGG | + | chr1.4:8367079-8367098 | MS.gene016002:CDS | 60.0% | |
GGACATGGCGCCATCGTTTC+TGG | - | chr1.4:8367068-8367087 | None:intergenic | 60.0% | |
GGTATGGAGGATCCCTCTGC+TGG | + | chr1.4:8366246-8366265 | MS.gene016002:intron | 60.0% | |
! | GACCTGCTGAAGTGGGTTCG+AGG | + | chr1.4:8366357-8366376 | MS.gene016002:CDS | 60.0% |
!! | CAGAAGTGTCCGTGCTACGG+AGG | + | chr1.4:8364436-8364455 | MS.gene016002:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 8363979 | 8367148 | 8363979 | ID=MS.gene016002 |
chr1.4 | mRNA | 8363979 | 8367148 | 8363979 | ID=MS.gene016002.t1;Parent=MS.gene016002 |
chr1.4 | exon | 8363979 | 8364021 | 8363979 | ID=MS.gene016002.t1.exon1;Parent=MS.gene016002.t1 |
chr1.4 | CDS | 8363979 | 8364021 | 8363979 | ID=cds.MS.gene016002.t1;Parent=MS.gene016002.t1 |
chr1.4 | exon | 8366247 | 8366890 | 8366247 | ID=MS.gene016002.t1.exon2;Parent=MS.gene016002.t1 |
chr1.4 | CDS | 8366247 | 8366890 | 8366247 | ID=cds.MS.gene016002.t1;Parent=MS.gene016002.t1 |
chr1.4 | exon | 8366996 | 8367148 | 8366996 | ID=MS.gene016002.t1.exon3;Parent=MS.gene016002.t1 |
chr1.4 | CDS | 8366996 | 8367148 | 8366996 | ID=cds.MS.gene016002.t1;Parent=MS.gene016002.t1 |
Gene Sequence |
Protein sequence |