Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016014.t1 | XP_024631042.1 | 98.1 | 261 | 1 | 1 | 1 | 257 | 178 | 438 | 8.70E-138 | 499.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016014.t1 | O04136 | 90.7 | 257 | 21 | 2 | 1 | 255 | 172 | 427 | 9.2e-128 | 457.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016014.t1 | A0A396JFC2 | 98.1 | 261 | 1 | 1 | 1 | 257 | 178 | 438 | 6.3e-138 | 499.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene016014.t1 | TF | HB-KNOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016014.t1 | MTR_1g012960 | 98.069 | 259 | 1 | 1 | 1 | 255 | 178 | 436 | 0.0 | 531 |
| MS.gene016014.t1 | MTR_3g106400 | 88.889 | 261 | 23 | 2 | 1 | 255 | 111 | 371 | 3.73e-171 | 477 |
| MS.gene016014.t1 | MTR_3g106400 | 88.889 | 261 | 23 | 2 | 1 | 255 | 111 | 371 | 4.33e-171 | 477 |
| MS.gene016014.t1 | MTR_3g106400 | 88.889 | 261 | 23 | 2 | 1 | 255 | 111 | 371 | 1.43e-170 | 477 |
| MS.gene016014.t1 | MTR_2g461240 | 84.047 | 257 | 37 | 2 | 1 | 254 | 99 | 354 | 5.68e-164 | 458 |
| MS.gene016014.t1 | MTR_4g116545 | 81.712 | 257 | 45 | 2 | 1 | 255 | 75 | 331 | 1.66e-157 | 441 |
| MS.gene016014.t1 | MTR_4g116545 | 83.607 | 244 | 38 | 2 | 1 | 242 | 75 | 318 | 4.34e-154 | 432 |
| MS.gene016014.t1 | MTR_5g011070 | 70.385 | 260 | 71 | 2 | 2 | 255 | 33 | 292 | 2.35e-129 | 369 |
| MS.gene016014.t1 | MTR_1g084060 | 35.000 | 240 | 135 | 6 | 2 | 239 | 25 | 245 | 8.24e-32 | 118 |
| MS.gene016014.t1 | MTR_1g084060 | 35.000 | 240 | 135 | 6 | 2 | 239 | 25 | 245 | 1.63e-31 | 118 |
| MS.gene016014.t1 | MTR_2g024390 | 30.833 | 240 | 141 | 3 | 1 | 239 | 122 | 337 | 2.55e-29 | 114 |
| MS.gene016014.t1 | MTR_5g033720 | 34.025 | 241 | 132 | 5 | 2 | 239 | 78 | 294 | 2.92e-27 | 107 |
| MS.gene016014.t1 | MTR_1g017080 | 32.645 | 242 | 137 | 6 | 1 | 239 | 124 | 342 | 8.61e-27 | 107 |
| MS.gene016014.t1 | MTR_5g085860 | 31.276 | 243 | 133 | 5 | 1 | 239 | 51 | 263 | 4.57e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016014.t1 | AT5G25220 | 89.231 | 260 | 19 | 2 | 1 | 255 | 164 | 419 | 5.27e-171 | 478 |
| MS.gene016014.t1 | AT5G25220 | 89.189 | 259 | 19 | 2 | 1 | 254 | 164 | 418 | 2.81e-170 | 477 |
| MS.gene016014.t1 | AT5G11060 | 87.645 | 259 | 23 | 2 | 1 | 254 | 128 | 382 | 1.01e-168 | 471 |
| MS.gene016014.t1 | AT4G32040 | 79.377 | 257 | 51 | 2 | 1 | 255 | 123 | 379 | 9.30e-148 | 418 |
| MS.gene016014.t1 | AT4G32040 | 79.377 | 257 | 51 | 2 | 1 | 255 | 123 | 379 | 1.09e-147 | 418 |
| MS.gene016014.t1 | AT1G62990 | 69.650 | 257 | 71 | 3 | 3 | 254 | 36 | 290 | 2.52e-130 | 370 |
| MS.gene016014.t1 | AT1G70510 | 35.537 | 242 | 125 | 8 | 2 | 239 | 75 | 289 | 1.48e-31 | 118 |
| MS.gene016014.t1 | AT1G70510 | 34.298 | 242 | 132 | 7 | 2 | 239 | 75 | 293 | 5.86e-30 | 114 |
| MS.gene016014.t1 | AT1G23380 | 34.959 | 246 | 121 | 8 | 2 | 239 | 91 | 305 | 2.01e-28 | 110 |
| MS.gene016014.t1 | AT4G08150 | 33.865 | 251 | 125 | 7 | 1 | 239 | 139 | 360 | 8.46e-27 | 107 |
| MS.gene016014.t1 | AT1G23380 | 34.677 | 248 | 121 | 9 | 2 | 239 | 91 | 307 | 1.52e-26 | 105 |
| MS.gene016014.t1 | AT1G62360 | 32.520 | 246 | 131 | 5 | 1 | 239 | 126 | 343 | 4.26e-25 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCAAACGCAGAGTATT+TGG | 0.262834 | 1.4:-8226646 | None:intergenic |
| CTTGTCTTACACGCTCCATT+AGG | 0.305466 | 1.4:-8228428 | None:intergenic |
| AACTAAAGCAAATTAATAAC+TGG | 0.324917 | 1.4:+8228935 | MS.gene016014:CDS |
| GTTAAACGTACTGTTGGATA+TGG | 0.348322 | 1.4:-8228685 | None:intergenic |
| TCAATCAAAGGAAGAGGAAT+TGG | 0.349434 | 1.4:+8228962 | MS.gene016014:CDS |
| GCAAGGTTGGTGCAGGAAAC+TGG | 0.359590 | 1.4:+8228907 | MS.gene016014:CDS |
| CAATCCTTACAAAGCCTAAC+AGG | 0.372024 | 1.4:+8227695 | MS.gene016014:CDS |
| TGTTGCCCCTGTACCTTCTC+CGG | 0.374819 | 1.4:-8228286 | None:intergenic |
| TCATTCTCTGTTGGTATAAG+AGG | 0.376610 | 1.4:-8228399 | None:intergenic |
| CAAAGAACTTGACCATTTCA+TGG | 0.380421 | 1.4:+8226680 | MS.gene016014:CDS |
| AGACGAGCTGGGAAACTTCC+TGG | 0.389865 | 1.4:+8228613 | MS.gene016014:CDS |
| GGTACCTGTTAGGCTTTGTA+AGG | 0.392039 | 1.4:-8227699 | None:intergenic |
| AAATACTCTGCGTTTGGTGG+TGG | 0.404646 | 1.4:+8226648 | MS.gene016014:CDS |
| GGTGCGGATAACATGGGATT+TGG | 0.416313 | 1.4:+8228375 | MS.gene016014:CDS |
| TTGTCTTACACGCTCCATTA+GGG | 0.421646 | 1.4:-8228427 | None:intergenic |
| TGACACAACTTCTGTCCTTA+AGG | 0.425689 | 1.4:+8228636 | MS.gene016014:CDS |
| GTCTGACGACGAAGATGAAC+AGG | 0.441640 | 1.4:+8228311 | MS.gene016014:CDS |
| TTGTTGCAATTGTTCTTTGA+AGG | 0.451938 | 1.4:-8227621 | None:intergenic |
| AGAGAATGAAAGGTCCCTAA+TGG | 0.452095 | 1.4:+8228413 | MS.gene016014:CDS |
| CGGCACATGTGGCGTGTTTG+AGG | 0.457717 | 1.4:+8226556 | MS.gene016014:CDS |
| TGGAAGCTGTAATGGCTTGT+TGG | 0.463261 | 1.4:+8227663 | MS.gene016014:CDS |
| TTCAAGACAGTAGAAGTTGA+AGG | 0.467671 | 1.4:-8228994 | None:intergenic |
| GTGATTGCCACCAAGCCTTA+AGG | 0.468131 | 1.4:-8228651 | None:intergenic |
| GTTGCCCCTGTACCTTCTCC+GGG | 0.477220 | 1.4:-8228285 | None:intergenic |
| CCATGCAATGGAAGCTGTAA+TGG | 0.479971 | 1.4:+8227655 | MS.gene016014:CDS |
| AGGGACCTTTCATTCTCTGT+TGG | 0.480001 | 1.4:-8228408 | None:intergenic |
| GTTGTATGAACAGTTGTTGT+CGG | 0.481534 | 1.4:+8226536 | MS.gene016014:CDS |
| GGAAGCTGTAATGGCTTGTT+GGG | 0.483636 | 1.4:+8227664 | MS.gene016014:CDS |
| AATACTCTGCGTTTGGTGGT+GGG | 0.489512 | 1.4:+8226649 | MS.gene016014:CDS |
| GTTTCACCCGGAGAAGGTAC+AGG | 0.491129 | 1.4:+8228279 | MS.gene016014:CDS |
| GCCAAATACTCTGCGTTTGG+TGG | 0.493142 | 1.4:+8226645 | MS.gene016014:CDS |
| TCTTGAAGAGCAAACGCAAA+AGG | 0.498087 | 1.4:+8229010 | MS.gene016014:CDS |
| CATTCTCTGTTGGTATAAGA+GGG | 0.502060 | 1.4:-8228398 | None:intergenic |
| CAACTTCTGTCCTTAAGGCT+TGG | 0.507609 | 1.4:+8228641 | MS.gene016014:CDS |
| CTTCTGTCCTTAAGGCTTGG+TGG | 0.509687 | 1.4:+8228644 | MS.gene016014:CDS |
| AGATAAAGCAAGGTTGGTGC+AGG | 0.511577 | 1.4:+8228900 | MS.gene016014:CDS |
| CCATTACAGCTTCCATTGCA+TGG | 0.512486 | 1.4:-8227655 | None:intergenic |
| ATACTCTGCGTTTGGTGGTG+GGG | 0.517244 | 1.4:+8226650 | MS.gene016014:CDS |
| GAAAATTGTGGACATAAGAG+AGG | 0.527462 | 1.4:+8228576 | MS.gene016014:CDS |
| TGATGGTGGTGCGGATAACA+TGG | 0.528693 | 1.4:+8228368 | MS.gene016014:CDS |
| GTGGCCAAATACTCTGCGTT+TGG | 0.531063 | 1.4:+8226642 | MS.gene016014:CDS |
| ATAACTGGTTTATCAATCAA+AGG | 0.531319 | 1.4:+8228950 | MS.gene016014:CDS |
| TCATACATTATAGGGTTACA+AGG | 0.531432 | 1.4:+8228552 | MS.gene016014:intron |
| GGAGGAAGATAAAGCAAGGT+TGG | 0.544598 | 1.4:+8228894 | MS.gene016014:intron |
| TACTGTTGGATATGGCCACT+TGG | 0.548498 | 1.4:-8228677 | None:intergenic |
| ATCCTCGGTAACTGATCCAC+CGG | 0.551656 | 1.4:-8226588 | None:intergenic |
| ACATGTTCGTGTCCATGCAA+TGG | 0.568400 | 1.4:+8227643 | MS.gene016014:CDS |
| TTATACCAACAGAGAATGAA+AGG | 0.571808 | 1.4:+8228403 | MS.gene016014:CDS |
| GGTTTATCAATCAAAGGAAG+AGG | 0.572061 | 1.4:+8228956 | MS.gene016014:CDS |
| TTCAGGAGGAAGATAAAGCA+AGG | 0.577710 | 1.4:+8228890 | MS.gene016014:intron |
| TTTCACCCGGAGAAGGTACA+GGG | 0.589308 | 1.4:+8228280 | MS.gene016014:CDS |
| AGGACAGAAGTTGTGTCACC+AGG | 0.595424 | 1.4:-8228631 | None:intergenic |
| ACAGTTGTTGTCGGCACATG+TGG | 0.599267 | 1.4:+8226545 | MS.gene016014:CDS |
| GGGTTACAAGGAGAAAATTG+TGG | 0.616009 | 1.4:+8228564 | MS.gene016014:intron |
| GTGTTTGAGGATAGCAACGC+CGG | 0.619072 | 1.4:+8226569 | MS.gene016014:CDS |
| GCTAACTGAGCATCAATCCT+CGG | 0.622785 | 1.4:-8226603 | None:intergenic |
| ACAGGAGTTTCACCCGGAGA+AGG | 0.623484 | 1.4:+8228273 | MS.gene016014:intron |
| GACAACAACTGTTCATACAA+CGG | 0.638324 | 1.4:-8226534 | None:intergenic |
| GTTAGCACAGTCTCAGAATG+TGG | 0.643950 | 1.4:+8226620 | MS.gene016014:CDS |
| AGTGACGCAAATCTGTTCGA+TGG | 0.645362 | 1.4:+8228339 | MS.gene016014:CDS |
| TTTGAGGATAGCAACGCCGG+TGG | 0.647198 | 1.4:+8226572 | MS.gene016014:CDS |
| GCATGAACAGGAGTTTCACC+CGG | 0.648191 | 1.4:+8228267 | MS.gene016014:intron |
| CGCCGGTGGATCAGTTACCG+AGG | 0.669945 | 1.4:+8226586 | MS.gene016014:CDS |
| GATGGTGGTGCGGATAACAT+GGG | 0.675748 | 1.4:+8228369 | MS.gene016014:CDS |
| AGCACAGTCTCAGAATGTGG+TGG | 0.676786 | 1.4:+8226623 | MS.gene016014:CDS |
| GGTGGCAATCACATTCCAAG+TGG | 0.712840 | 1.4:+8228662 | MS.gene016014:CDS |
| TTCACCCGGAGAAGGTACAG+GGG | 0.750086 | 1.4:+8228281 | MS.gene016014:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTATGATTAAAATAAA+AGG | - | chr1.4:8228542-8228561 | None:intergenic | 10.0% |
| !!! | TATTTTAATCATACATTATA+GGG | + | chr1.4:8228544-8228563 | MS.gene016014:intron | 10.0% |
| !!! | TTATTTTAATCATACATTAT+AGG | + | chr1.4:8228543-8228562 | MS.gene016014:intron | 10.0% |
| !! | AAATTAGTAATTAATCCAAA+AGG | - | chr1.4:8226845-8226864 | None:intergenic | 15.0% |
| !! | TTAAGCAAAAATATAGATAA+CGG | - | chr1.4:8228851-8228870 | None:intergenic | 15.0% |
| !!! | AAACTAGTACTTTTATATTT+AGG | + | chr1.4:8229038-8229057 | MS.gene016014:intron | 15.0% |
| !!! | AACTAGTACTTTTATATTTA+GGG | + | chr1.4:8229039-8229058 | MS.gene016014:intron | 15.0% |
| !! | AAAAAGAACAATGAGATAAA+TGG | - | chr1.4:8226747-8226766 | None:intergenic | 20.0% |
| !! | AAAAAGAATATACCATGAAA+TGG | - | chr1.4:8226695-8226714 | None:intergenic | 20.0% |
| !! | AACTAAAGCAAATTAATAAC+TGG | + | chr1.4:8228935-8228954 | MS.gene016014:CDS | 20.0% |
| !! | AGTTGAACAGAATTAAAATT+TGG | + | chr1.4:8226967-8226986 | MS.gene016014:intron | 20.0% |
| !! | GGAATAGTTATTAAAAAGAA+GGG | - | chr1.4:8228505-8228524 | None:intergenic | 20.0% |
| !! | TTGAATTTATGAGAAATCAT+GGG | + | chr1.4:8227144-8227163 | MS.gene016014:intron | 20.0% |
| !! | TTTCTTGTAACAAAAATTTG+TGG | - | chr1.4:8226790-8226809 | None:intergenic | 20.0% |
| !! | TTTGAATTTATGAGAAATCA+TGG | + | chr1.4:8227143-8227162 | MS.gene016014:intron | 20.0% |
| !!! | AATAACAATTTTTCTGTTTG+TGG | + | chr1.4:8226812-8226831 | MS.gene016014:intron | 20.0% |
| !!! | AATTGGTTTGTATTTTATGT+TGG | + | chr1.4:8226944-8226963 | MS.gene016014:intron | 20.0% |
| !!! | ATGAAAATGCAATTTTGAAT+TGG | + | chr1.4:8227043-8227062 | MS.gene016014:intron | 20.0% |
| !!! | ATTAAAATTTGGTAGTTTTG+TGG | + | chr1.4:8226978-8226997 | MS.gene016014:intron | 20.0% |
| !!! | CTAGATTTTATTACCAAATA+AGG | + | chr1.4:8227396-8227415 | MS.gene016014:intron | 20.0% |
| !!! | CTTATTATTACAGTTGTTTT+TGG | + | chr1.4:8226892-8226911 | MS.gene016014:intron | 20.0% |
| !!! | GTAAAAGAAGACATTTTTTT+TGG | - | chr1.4:8227723-8227742 | None:intergenic | 20.0% |
| !!! | TGTTTGAAGAAAGTATTAAA+GGG | + | chr1.4:8227959-8227978 | MS.gene016014:intron | 20.0% |
| !!! | TTGTGATTTCAATGTATTTT+TGG | + | chr1.4:8227081-8227100 | MS.gene016014:intron | 20.0% |
| ! | AAAAGTGATTACAGAAAATG+TGG | - | chr1.4:8227811-8227830 | None:intergenic | 25.0% |
| ! | ATAAATGGCAAAGAAATTTG+AGG | - | chr1.4:8226732-8226751 | None:intergenic | 25.0% |
| ! | ATCTTTCAAGAATACAAGTA+GGG | + | chr1.4:8228087-8228106 | MS.gene016014:intron | 25.0% |
| ! | ATGGAATCATGTGATAAATA+TGG | + | chr1.4:8226921-8226940 | MS.gene016014:intron | 25.0% |
| ! | GGGAATAGTTATTAAAAAGA+AGG | - | chr1.4:8228506-8228525 | None:intergenic | 25.0% |
| ! | GTTTATTCAAAAACTGGAAA+GGG | - | chr1.4:8227290-8227309 | None:intergenic | 25.0% |
| ! | TAAAAATAACAAAGCAAGAG+AGG | - | chr1.4:8229138-8229157 | None:intergenic | 25.0% |
| ! | TATATAGTTAAACGTACTGT+TGG | - | chr1.4:8228694-8228713 | None:intergenic | 25.0% |
| ! | TCATGTGATAAATATGGAAT+TGG | + | chr1.4:8226927-8226946 | MS.gene016014:intron | 25.0% |
| ! | TGAATTTATGAGAAATCATG+GGG | + | chr1.4:8227145-8227164 | MS.gene016014:intron | 25.0% |
| ! | TGTAATAACCACTAATCTTA+GGG | - | chr1.4:8229082-8229101 | None:intergenic | 25.0% |
| ! | TGTTTATTCAAAAACTGGAA+AGG | - | chr1.4:8227291-8227310 | None:intergenic | 25.0% |
| !! | ATAACTGGTTTATCAATCAA+AGG | + | chr1.4:8228950-8228969 | MS.gene016014:CDS | 25.0% |
| !! | ATCAGTTTTACTTGTCAAAT+AGG | - | chr1.4:8228232-8228251 | None:intergenic | 25.0% |
| !! | ATGATGGAATGAAAATAACT+TGG | + | chr1.4:8227784-8227803 | MS.gene016014:intron | 25.0% |
| !! | TAATGTATTATGTGCTTTTC+AGG | + | chr1.4:8228873-8228892 | MS.gene016014:intron | 25.0% |
| !! | TTTAAAACAGAACTAAGAGA+AGG | - | chr1.4:8227348-8227367 | None:intergenic | 25.0% |
| !! | TTTAGTAATTCTGTCTGTTT+TGG | + | chr1.4:8227866-8227885 | MS.gene016014:intron | 25.0% |
| !! | TTTTATTACCAAATAAGGAG+CGG | + | chr1.4:8227401-8227420 | MS.gene016014:intron | 25.0% |
| !!! | AGGCTTTAAAATATACTTTC+AGG | - | chr1.4:8228212-8228231 | None:intergenic | 25.0% |
| !!! | ATGAGATTTTTTTTGTACAG+AGG | + | chr1.4:8227247-8227266 | MS.gene016014:intron | 25.0% |
| !!! | CAGTTGTTTTTGGATTTTTA+TGG | + | chr1.4:8226902-8226921 | MS.gene016014:intron | 25.0% |
| !!! | CTCTTGCTTTGTTATTTTTA+GGG | + | chr1.4:8229138-8229157 | MS.gene016014:intron | 25.0% |
| !!! | GTGTTTGAAGAAAGTATTAA+AGG | + | chr1.4:8227958-8227977 | MS.gene016014:intron | 25.0% |
| !!! | GTTAATTACATTTTAGTCAC+TGG | - | chr1.4:8227481-8227500 | None:intergenic | 25.0% |
| !!! | TCTCTTGCTTTGTTATTTTT+AGG | + | chr1.4:8229137-8229156 | MS.gene016014:intron | 25.0% |
| !!! | TGAGATTTTTTTTGTACAGA+GGG | + | chr1.4:8227248-8227267 | MS.gene016014:intron | 25.0% |
| AGCATGAATTGAAACATGTA+AGG | + | chr1.4:8228457-8228476 | MS.gene016014:intron | 30.0% | |
| ATAAAAGGAGATGAATCATG+TGG | - | chr1.4:8228527-8228546 | None:intergenic | 30.0% | |
| ATGTGATTTCCTTAACAAGA+AGG | - | chr1.4:8229112-8229131 | None:intergenic | 30.0% | |
| CATCTTTCAAGAATACAAGT+AGG | + | chr1.4:8228086-8228105 | MS.gene016014:intron | 30.0% | |
| GAATTTATGAGAAATCATGG+GGG | + | chr1.4:8227146-8227165 | MS.gene016014:intron | 30.0% | |
| GAGTGTGTTTATTCAAAAAC+TGG | - | chr1.4:8227296-8227315 | None:intergenic | 30.0% | |
| GCATGAATTGAAACATGTAA+GGG | + | chr1.4:8228458-8228477 | MS.gene016014:intron | 30.0% | |
| GTAATAACCACTAATCTTAG+GGG | - | chr1.4:8229081-8229100 | None:intergenic | 30.0% | |
| GTGTAATAACCACTAATCTT+AGG | - | chr1.4:8229083-8229102 | None:intergenic | 30.0% | |
| TAAAAGGAGATGAATCATGT+GGG | - | chr1.4:8228526-8228545 | None:intergenic | 30.0% | |
| TAATCAGGGGAACATAATAT+AGG | - | chr1.4:8227836-8227855 | None:intergenic | 30.0% | |
| TCATACATTATAGGGTTACA+AGG | + | chr1.4:8228552-8228571 | MS.gene016014:intron | 30.0% | |
| TCTTTCAAGAATACAAGTAG+GGG | + | chr1.4:8228088-8228107 | MS.gene016014:intron | 30.0% | |
| TGTGATTTCCTTAACAAGAA+GGG | - | chr1.4:8229111-8229130 | None:intergenic | 30.0% | |
| TTATACCAACAGAGAATGAA+AGG | + | chr1.4:8228403-8228422 | MS.gene016014:CDS | 30.0% | |
| TTGTTGCAATTGTTCTTTGA+AGG | - | chr1.4:8227624-8227643 | None:intergenic | 30.0% | |
| ! | AAATGCAATTTTGAATTGGC+TGG | + | chr1.4:8227047-8227066 | MS.gene016014:intron | 30.0% |
| ! | TACTTTTGCAGTTTGATATG+CGG | - | chr1.4:8228063-8228082 | None:intergenic | 30.0% |
| !! | TAAAGCTTTGTTGCATATGA+TGG | + | chr1.4:8227768-8227787 | MS.gene016014:intron | 30.0% |
| !!! | AATTTGGTAGTTTTGTGGTA+TGG | + | chr1.4:8226983-8227002 | MS.gene016014:intron | 30.0% |
| !!! | AATTTTGAATTGGCTGGTTT+TGG | + | chr1.4:8227053-8227072 | MS.gene016014:intron | 30.0% |
| !!! | ATTTTGAATTGGCTGGTTTT+GGG | + | chr1.4:8227054-8227073 | MS.gene016014:intron | 30.0% |
| !!! | CATTTTTTTTGGTACCTGTT+AGG | - | chr1.4:8227712-8227731 | None:intergenic | 30.0% |
| !!! | GAGATTTTTTTTGTACAGAG+GGG | + | chr1.4:8227249-8227268 | MS.gene016014:intron | 30.0% |
| !!! | GGTGTACTTTTGATTTAGAA+TGG | + | chr1.4:8227422-8227441 | MS.gene016014:intron | 30.0% |
| CAAAGAACTTGACCATTTCA+TGG | + | chr1.4:8226680-8226699 | MS.gene016014:CDS | 35.0% | |
| CATTCTCTGTTGGTATAAGA+GGG | - | chr1.4:8228401-8228420 | None:intergenic | 35.0% | |
| GAAAATTGTGGACATAAGAG+AGG | + | chr1.4:8228576-8228595 | MS.gene016014:CDS | 35.0% | |
| GACAACAACTGTTCATACAA+CGG | - | chr1.4:8226537-8226556 | None:intergenic | 35.0% | |
| GGTTTATCAATCAAAGGAAG+AGG | + | chr1.4:8228956-8228975 | MS.gene016014:CDS | 35.0% | |
| GTCTCTTGTAAGACTATACA+AGG | + | chr1.4:8227888-8227907 | MS.gene016014:intron | 35.0% | |
| GTTAAACGTACTGTTGGATA+TGG | - | chr1.4:8228688-8228707 | None:intergenic | 35.0% | |
| GTTGTATGAACAGTTGTTGT+CGG | + | chr1.4:8226536-8226555 | MS.gene016014:CDS | 35.0% | |
| TAAAAGCAGCAACGTAATCA+GGG | - | chr1.4:8227850-8227869 | None:intergenic | 35.0% | |
| TCAATCAAAGGAAGAGGAAT+TGG | + | chr1.4:8228962-8228981 | MS.gene016014:CDS | 35.0% | |
| TCATTCTCTGTTGGTATAAG+AGG | - | chr1.4:8228402-8228421 | None:intergenic | 35.0% | |
| TTAAAGGGTTCATTGTGCTT+TGG | + | chr1.4:8227974-8227993 | MS.gene016014:intron | 35.0% | |
| TTCAAGACAGTAGAAGTTGA+AGG | - | chr1.4:8228997-8229016 | None:intergenic | 35.0% | |
| ! | GCTGGTCTATTATCTCTTAT+AGG | + | chr1.4:8228176-8228195 | MS.gene016014:intron | 35.0% |
| ! | TTTTGGATGATTGCTCAAGT+GGG | + | chr1.4:8227098-8227117 | MS.gene016014:intron | 35.0% |
| ! | TTTTTGGATGATTGCTCAAG+TGG | + | chr1.4:8227097-8227116 | MS.gene016014:intron | 35.0% |
| !! | TGTATTATGTGCTTTTCAGG+AGG | + | chr1.4:8228876-8228895 | MS.gene016014:intron | 35.0% |
| !!! | GTTTGTGGTTTTAGTCCTTT+TGG | + | chr1.4:8226827-8226846 | MS.gene016014:intron | 35.0% |
| AAAAGCAGCAACGTAATCAG+GGG | - | chr1.4:8227849-8227868 | None:intergenic | 40.0% | |
| AAAGTACACCGCTCCTTATT+TGG | - | chr1.4:8227412-8227431 | None:intergenic | 40.0% | |
| AGAGAATGAAAGGTCCCTAA+TGG | + | chr1.4:8228413-8228432 | MS.gene016014:CDS | 40.0% | |
| AGAGATAATAGACCAGCTTG+AGG | - | chr1.4:8228173-8228192 | None:intergenic | 40.0% | |
| AGGCCTAAGACTTTCAAAGT+AGG | - | chr1.4:8228153-8228172 | None:intergenic | 40.0% | |
| CAATCCTTACAAAGCCTAAC+AGG | + | chr1.4:8227695-8227714 | MS.gene016014:CDS | 40.0% | |
| CTAAAAGCAGCAACGTAATC+AGG | - | chr1.4:8227851-8227870 | None:intergenic | 40.0% | |
| CTTTCTGTGATGCTAACACA+TGG | - | chr1.4:8228814-8228833 | None:intergenic | 40.0% | |
| GAATGGATACTTGATGTGCA+GGG | + | chr1.4:8227120-8227139 | MS.gene016014:intron | 40.0% | |
| GGGTTACAAGGAGAAAATTG+TGG | + | chr1.4:8228564-8228583 | MS.gene016014:intron | 40.0% | |
| TCAAGAATACAAGTAGGGGT+GGG | + | chr1.4:8228092-8228111 | MS.gene016014:intron | 40.0% | |
| TCTTGAAGAGCAAACGCAAA+AGG | + | chr1.4:8229010-8229029 | MS.gene016014:CDS | 40.0% | |
| TGACACAACTTCTGTCCTTA+AGG | + | chr1.4:8228636-8228655 | MS.gene016014:CDS | 40.0% | |
| TTCAAGAATACAAGTAGGGG+TGG | + | chr1.4:8228091-8228110 | MS.gene016014:intron | 40.0% | |
| TTCAGGAGGAAGATAAAGCA+AGG | + | chr1.4:8228890-8228909 | MS.gene016014:intron | 40.0% | |
| TTGCAAAGTTGCAATGCATG+TGG | - | chr1.4:8227914-8227933 | None:intergenic | 40.0% | |
| TTGTCTTACACGCTCCATTA+GGG | - | chr1.4:8228430-8228449 | None:intergenic | 40.0% | |
| TTTATGAGAAATCATGGGGG+TGG | + | chr1.4:8227149-8227168 | MS.gene016014:intron | 40.0% | |
| TTTCTGATTGCTGCATGAAC+AGG | + | chr1.4:8228255-8228274 | MS.gene016014:intron | 40.0% | |
| ! | ACACATGGACTAATGTGCAT+TGG | - | chr1.4:8228799-8228818 | None:intergenic | 40.0% |
| ! | CACATGGACTAATGTGCATT+GGG | - | chr1.4:8228798-8228817 | None:intergenic | 40.0% |
| ! | TGGCCTACTTTGAAAGTCTT+AGG | + | chr1.4:8228147-8228166 | MS.gene016014:intron | 40.0% |
| !!! | CTGTTCGATGGTAGTTTTGA+TGG | + | chr1.4:8228351-8228370 | MS.gene016014:CDS | 40.0% |
| !!! | TTCGATGGTAGTTTTGATGG+TGG | + | chr1.4:8228354-8228373 | MS.gene016014:CDS | 40.0% |
| ACATGTTCGTGTCCATGCAA+TGG | + | chr1.4:8227643-8227662 | MS.gene016014:CDS | 45.0% | |
| AGGGACCTTTCATTCTCTGT+TGG | - | chr1.4:8228411-8228430 | None:intergenic | 45.0% | |
| AGTGACGCAAATCTGTTCGA+TGG | + | chr1.4:8228339-8228358 | MS.gene016014:CDS | 45.0% | |
| CAACTTCTGTCCTTAAGGCT+TGG | + | chr1.4:8228641-8228660 | MS.gene016014:CDS | 45.0% | |
| CCAAACTCCCCTAAGATTAG+TGG | + | chr1.4:8229071-8229090 | MS.gene016014:intron | 45.0% | |
| CCACTAATCTTAGGGGAGTT+TGG | - | chr1.4:8229074-8229093 | None:intergenic | 45.0% | |
| CCATGCAATGGAAGCTGTAA+TGG | + | chr1.4:8227655-8227674 | MS.gene016014:CDS | 45.0% | |
| CCATTACAGCTTCCATTGCA+TGG | - | chr1.4:8227658-8227677 | None:intergenic | 45.0% | |
| CTTGTCTTACACGCTCCATT+AGG | - | chr1.4:8228431-8228450 | None:intergenic | 45.0% | |
| GATGATTGCTCAAGTGGGAA+TGG | + | chr1.4:8227103-8227122 | MS.gene016014:intron | 45.0% | |
| GCTAACTGAGCATCAATCCT+CGG | - | chr1.4:8226606-8226625 | None:intergenic | 45.0% | |
| GGAATGGATACTTGATGTGC+AGG | + | chr1.4:8227119-8227138 | MS.gene016014:intron | 45.0% | |
| GGAGGAAGATAAAGCAAGGT+TGG | + | chr1.4:8228894-8228913 | MS.gene016014:intron | 45.0% | |
| GTGTGACTGCAACATCAAGA+AGG | - | chr1.4:8227582-8227601 | None:intergenic | 45.0% | |
| GTTAGCACAGTCTCAGAATG+TGG | + | chr1.4:8226620-8226639 | MS.gene016014:CDS | 45.0% | |
| TACTGTTGGATATGGCCACT+TGG | - | chr1.4:8228680-8228699 | None:intergenic | 45.0% | |
| TTAGACCACACAAGGCTGTA+AGG | + | chr1.4:8228116-8228135 | MS.gene016014:intron | 45.0% | |
| TTGATATGCGGACACGATGT+TGG | - | chr1.4:8228051-8228070 | None:intergenic | 45.0% | |
| ! | AAATACTCTGCGTTTGGTGG+TGG | + | chr1.4:8226648-8226667 | MS.gene016014:CDS | 45.0% |
| ! | AATACTCTGCGTTTGGTGGT+GGG | + | chr1.4:8226649-8226668 | MS.gene016014:CDS | 45.0% |
| ! | ACCACCAAACGCAGAGTATT+TGG | - | chr1.4:8226649-8226668 | None:intergenic | 45.0% |
| ! | ATTTTACGCAAGAGACGAGC+TGG | + | chr1.4:8228601-8228620 | MS.gene016014:CDS | 45.0% |
| ! | GGTACCTGTTAGGCTTTGTA+AGG | - | chr1.4:8227702-8227721 | None:intergenic | 45.0% |
| ! | TAAGACCTTACAGCCTTGTG+TGG | - | chr1.4:8228124-8228143 | None:intergenic | 45.0% |
| ! | TGGAAGCTGTAATGGCTTGT+TGG | + | chr1.4:8227663-8227682 | MS.gene016014:CDS | 45.0% |
| ! | TTTTACGCAAGAGACGAGCT+GGG | + | chr1.4:8228602-8228621 | MS.gene016014:CDS | 45.0% |
| !! | AGATAAAGCAAGGTTGGTGC+AGG | + | chr1.4:8228900-8228919 | MS.gene016014:CDS | 45.0% |
| !! | GGAAGCTGTAATGGCTTGTT+GGG | + | chr1.4:8227664-8227683 | MS.gene016014:CDS | 45.0% |
| !!! | TGGTAGTTTTGATGGTGGTG+CGG | + | chr1.4:8228359-8228378 | MS.gene016014:CDS | 45.0% |
| AAGGCTGTAAGGTCTTAGCG+TGG | + | chr1.4:8228127-8228146 | MS.gene016014:intron | 50.0% | |
| ACAGTTGTTGTCGGCACATG+TGG | + | chr1.4:8226545-8226564 | MS.gene016014:CDS | 50.0% | |
| AGCACAGTCTCAGAATGTGG+TGG | + | chr1.4:8226623-8226642 | MS.gene016014:CDS | 50.0% | |
| AGGACAGAAGTTGTGTCACC+AGG | - | chr1.4:8228634-8228653 | None:intergenic | 50.0% | |
| ATCCTCGGTAACTGATCCAC+CGG | - | chr1.4:8226591-8226610 | None:intergenic | 50.0% | |
| ATGAGAAATCATGGGGGTGG+AGG | + | chr1.4:8227152-8227171 | MS.gene016014:intron | 50.0% | |
| CACTGACGCCCTTCTTGTTA+AGG | + | chr1.4:8229100-8229119 | MS.gene016014:intron | 50.0% | |
| CTTCTGTCCTTAAGGCTTGG+TGG | + | chr1.4:8228644-8228663 | MS.gene016014:CDS | 50.0% | |
| GAAAGTCTTAGGCCTCAAGC+TGG | + | chr1.4:8228158-8228177 | MS.gene016014:intron | 50.0% | |
| GCATGAACAGGAGTTTCACC+CGG | + | chr1.4:8228267-8228286 | MS.gene016014:intron | 50.0% | |
| GCCAAATACTCTGCGTTTGG+TGG | + | chr1.4:8226645-8226664 | MS.gene016014:CDS | 50.0% | |
| GGTGCGGATAACATGGGATT+TGG | + | chr1.4:8228375-8228394 | MS.gene016014:CDS | 50.0% | |
| GGTGGCAATCACATTCCAAG+TGG | + | chr1.4:8228662-8228681 | MS.gene016014:CDS | 50.0% | |
| GTCTGACGACGAAGATGAAC+AGG | + | chr1.4:8228311-8228330 | MS.gene016014:CDS | 50.0% | |
| GTGATTGCCACCAAGCCTTA+AGG | - | chr1.4:8228654-8228673 | None:intergenic | 50.0% | |
| GTGGCCAAATACTCTGCGTT+TGG | + | chr1.4:8226642-8226661 | MS.gene016014:CDS | 50.0% | |
| GTGTTTGAGGATAGCAACGC+CGG | + | chr1.4:8226569-8226588 | MS.gene016014:CDS | 50.0% | |
| TGAGAAATCATGGGGGTGGA+GGG | + | chr1.4:8227153-8227172 | MS.gene016014:intron | 50.0% | |
| ! | GATGGTGGTGCGGATAACAT+GGG | + | chr1.4:8228369-8228388 | MS.gene016014:CDS | 50.0% |
| ! | TTTCACCCGGAGAAGGTACA+GGG | + | chr1.4:8228280-8228299 | MS.gene016014:CDS | 50.0% |
| !! | ATACTCTGCGTTTGGTGGTG+GGG | + | chr1.4:8226650-8226669 | MS.gene016014:CDS | 50.0% |
| !! | TGATGGTGGTGCGGATAACA+TGG | + | chr1.4:8228368-8228387 | MS.gene016014:CDS | 50.0% |
| ACAGGAGTTTCACCCGGAGA+AGG | + | chr1.4:8228273-8228292 | MS.gene016014:intron | 55.0% | |
| AGACGAGCTGGGAAACTTCC+TGG | + | chr1.4:8228613-8228632 | MS.gene016014:CDS | 55.0% | |
| GGGTGGGATTAGACCACACA+AGG | + | chr1.4:8228108-8228127 | MS.gene016014:intron | 55.0% | |
| TGTTGCCCCTGTACCTTCTC+CGG | - | chr1.4:8228289-8228308 | None:intergenic | 55.0% | |
| TTTGAGGATAGCAACGCCGG+TGG | + | chr1.4:8226572-8226591 | MS.gene016014:CDS | 55.0% | |
| ! | GTTTCACCCGGAGAAGGTAC+AGG | + | chr1.4:8228279-8228298 | MS.gene016014:CDS | 55.0% |
| ! | TTCACCCGGAGAAGGTACAG+GGG | + | chr1.4:8228281-8228300 | MS.gene016014:CDS | 55.0% |
| !! | GCAAGGTTGGTGCAGGAAAC+TGG | + | chr1.4:8228907-8228926 | MS.gene016014:CDS | 55.0% |
| CGGCACATGTGGCGTGTTTG+AGG | + | chr1.4:8226556-8226575 | MS.gene016014:CDS | 60.0% | |
| GTTGCCCCTGTACCTTCTCC+GGG | - | chr1.4:8228288-8228307 | None:intergenic | 60.0% | |
| CGCCGGTGGATCAGTTACCG+AGG | + | chr1.4:8226586-8226605 | MS.gene016014:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 8226525 | 8229168 | 8226525 | ID=MS.gene016014 |
| chr1.4 | mRNA | 8226525 | 8229168 | 8226525 | ID=MS.gene016014.t1;Parent=MS.gene016014 |
| chr1.4 | exon | 8226525 | 8226701 | 8226525 | ID=MS.gene016014.t1.exon1;Parent=MS.gene016014.t1 |
| chr1.4 | CDS | 8226525 | 8226701 | 8226525 | ID=cds.MS.gene016014.t1;Parent=MS.gene016014.t1 |
| chr1.4 | exon | 8227596 | 8227716 | 8227596 | ID=MS.gene016014.t1.exon2;Parent=MS.gene016014.t1 |
| chr1.4 | CDS | 8227596 | 8227716 | 8227596 | ID=cds.MS.gene016014.t1;Parent=MS.gene016014.t1 |
| chr1.4 | exon | 8228277 | 8228473 | 8228277 | ID=MS.gene016014.t1.exon3;Parent=MS.gene016014.t1 |
| chr1.4 | CDS | 8228277 | 8228473 | 8228277 | ID=cds.MS.gene016014.t1;Parent=MS.gene016014.t1 |
| chr1.4 | exon | 8228565 | 8228696 | 8228565 | ID=MS.gene016014.t1.exon4;Parent=MS.gene016014.t1 |
| chr1.4 | CDS | 8228565 | 8228696 | 8228565 | ID=cds.MS.gene016014.t1;Parent=MS.gene016014.t1 |
| chr1.4 | exon | 8228895 | 8229031 | 8228895 | ID=MS.gene016014.t1.exon5;Parent=MS.gene016014.t1 |
| chr1.4 | CDS | 8228895 | 8229031 | 8228895 | ID=cds.MS.gene016014.t1;Parent=MS.gene016014.t1 |
| chr1.4 | exon | 8229159 | 8229168 | 8229159 | ID=MS.gene016014.t1.exon6;Parent=MS.gene016014.t1 |
| chr1.4 | CDS | 8229159 | 8229168 | 8229159 | ID=cds.MS.gene016014.t1;Parent=MS.gene016014.t1 |
| Gene Sequence |
| Protein sequence |
