AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016096

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016096.t1 MTR_1g013790 93.359 256 16 1 1 256 1 255 0.0 497
MS.gene016096.t1 MTR_1g013760 46.626 163 74 4 83 239 122 277 1.49e-41 144
MS.gene016096.t1 MTR_4g007060 36.502 263 130 4 9 234 14 276 1.76e-41 144
MS.gene016096.t1 MTR_4g007060 36.090 266 133 4 6 234 45 310 3.40e-41 144
MS.gene016096.t1 MTR_2g105060 37.931 261 120 7 15 240 62 315 1.39e-40 142
MS.gene016096.t1 MTR_2g105060 45.399 163 68 3 86 234 79 234 1.72e-39 137
MS.gene016096.t1 MTR_3g106060 41.250 160 83 2 86 234 123 282 3.57e-37 132
MS.gene016096.t1 MTR_7g110720 41.104 163 82 4 6 161 94 249 2.03e-33 125
MS.gene016096.t1 MTR_7g110720 38.919 185 82 6 6 161 94 276 4.31e-32 122
MS.gene016096.t1 MTR_3g053330 48.421 95 47 1 83 177 235 327 1.42e-26 107
MS.gene016096.t1 MTR_4g094412 42.342 111 52 2 61 161 195 303 2.57e-25 104
MS.gene016096.t1 MTR_4g094412 41.284 109 56 1 61 161 186 294 2.64e-25 103
MS.gene016096.t1 MTR_4g107970 52.439 82 37 1 80 161 159 238 4.79e-25 103
MS.gene016096.t1 MTR_4g107970 52.439 82 37 1 80 161 236 315 6.15e-25 103
MS.gene016096.t1 MTR_4g132430 59.091 66 27 0 96 161 122 187 2.35e-24 100
MS.gene016096.t1 MTR_2g023930 54.795 73 33 0 89 161 293 365 3.95e-24 101
MS.gene016096.t1 MTR_4g132430 59.091 66 27 0 96 161 256 321 7.95e-24 100
MS.gene016096.t1 MTR_4g007060 39.355 155 72 1 6 138 45 199 1.61e-23 95.5
MS.gene016096.t1 MTR_7g009730 42.982 114 58 3 45 158 170 276 1.68e-23 99.4
MS.gene016096.t1 MTR_2g045360 50.575 87 40 2 99 185 209 292 4.54e-23 97.4
MS.gene016096.t1 MTR_4g049760 38.211 123 63 3 39 161 241 350 5.83e-23 97.8
MS.gene016096.t1 MTR_2g088000 56.061 66 29 0 96 161 344 409 6.96e-23 97.8
MS.gene016096.t1 MTR_4g049790 53.030 66 31 0 96 161 307 372 2.41e-21 93.2
MS.gene016096.t1 MTR_5g097490 50.000 76 35 2 86 161 239 311 1.31e-19 87.4
MS.gene016096.t1 MTR_2g033820 45.745 94 43 3 100 186 202 294 2.64e-18 83.6
MS.gene016096.t1 MTR_5g094430 37.815 119 63 4 51 161 196 311 4.29e-18 83.2
MS.gene016096.t1 MTR_5g074400 50.794 63 30 1 99 161 418 479 4.46e-18 83.6
MS.gene016096.t1 MTR_5g074400 48.333 60 29 2 102 161 244 301 1.78e-12 67.0
MS.gene016096.t1 MTR_5g094430 37.815 119 63 4 51 161 174 289 4.64e-18 83.2
MS.gene016096.t1 MTR_5g094430 37.815 119 63 4 51 161 308 423 4.97e-18 83.6
MS.gene016096.t1 MTR_3g056100 41.935 93 48 3 72 161 372 461 6.58e-18 83.2
MS.gene016096.t1 MTR_3g056100 41.935 93 48 3 72 161 385 474 6.90e-18 83.2
MS.gene016096.t1 MTR_3g056100 41.935 93 48 3 72 161 228 317 7.33e-18 82.8
MS.gene016096.t1 MTR_3g056100 41.935 93 48 3 72 161 241 330 7.72e-18 82.8
MS.gene016096.t1 MTR_4g094908 51.613 62 30 0 99 160 264 325 1.19e-17 81.3
MS.gene016096.t1 MTR_7g011820 40.952 105 53 4 74 172 382 483 2.01e-17 81.6
MS.gene016096.t1 MTR_7g011820 48.333 60 29 2 102 161 229 286 3.33e-11 63.2
MS.gene016096.t1 MTR_2g024350 46.970 66 35 0 96 161 3 68 3.27e-17 78.6
MS.gene016096.t1 MTR_1g086790 50.769 65 31 1 100 164 157 220 3.44e-17 80.1
MS.gene016096.t1 MTR_1g070455 48.485 66 33 1 99 163 291 356 4.52e-17 80.1
MS.gene016096.t1 MTR_3g031220 49.206 63 31 1 99 161 363 424 4.68e-17 80.5
MS.gene016096.t1 MTR_3g031220 50.000 60 28 2 102 161 199 256 5.03e-13 68.6
MS.gene016096.t1 MTR_2g024380 50.820 61 30 0 101 161 251 311 8.18e-17 79.7
MS.gene016096.t1 MTR_1g015140 50.000 60 29 1 99 158 100 158 1.16e-16 75.5
MS.gene016096.t1 MTR_5g016610 50.000 62 31 0 99 160 197 258 1.19e-16 77.8
MS.gene016096.t1 MTR_3g009470 46.575 73 38 1 89 161 483 554 1.20e-16 79.7
MS.gene016096.t1 MTR_3g009470 41.333 75 35 3 94 161 266 338 8.34e-11 62.4
MS.gene016096.t1 MTR_5g042920 40.404 99 49 3 71 161 283 379 1.27e-16 79.0
MS.gene016096.t1 MTR_5g042920 35.922 103 58 3 102 204 152 246 6.04e-14 71.2
MS.gene016096.t1 MTR_7g079010 53.333 60 27 1 99 158 139 197 1.83e-16 76.3
MS.gene016096.t1 MTR_4g013260 45.205 73 39 1 89 161 324 395 2.58e-16 78.2
MS.gene016096.t1 MTR_4g013260 45.902 61 32 1 101 161 184 243 9.09e-13 67.8
MS.gene016096.t1 MTR_4g082580 42.683 82 43 3 80 161 260 337 3.15e-16 77.8
MS.gene016096.t1 MTR_7g028415 48.387 62 31 1 99 160 91 151 3.43e-16 74.3
MS.gene016096.t1 MTR_7g028710 48.387 62 31 1 99 160 91 151 3.43e-16 74.3
MS.gene016096.t1 MTR_7g109800 46.053 76 38 2 100 175 144 216 3.57e-16 76.6
MS.gene016096.t1 MTR_7g071120 45.205 73 39 1 89 161 312 383 4.56e-16 77.8
MS.gene016096.t1 MTR_7g071120 34.058 138 63 7 88 225 158 267 5.26e-12 65.5
MS.gene016096.t1 MTR_4g094588 41.111 90 43 3 100 180 177 265 5.16e-16 76.6
MS.gene016096.t1 MTR_1g009613 46.774 62 33 0 99 160 260 321 7.43e-16 76.3
MS.gene016096.t1 MTR_7g100510 46.970 66 34 1 96 161 356 420 7.48e-16 77.0
MS.gene016096.t1 MTR_7g100510 48.571 70 34 2 102 171 190 257 5.16e-15 74.3
MS.gene016096.t1 MTR_5g091390 48.387 62 31 1 100 161 156 216 7.64e-16 75.9
MS.gene016096.t1 MTR_2g016770 48.333 60 31 0 102 161 36 95 1.20e-15 73.9
MS.gene016096.t1 MTR_0117s0040 51.667 60 29 0 99 158 72 131 1.44e-15 74.3
MS.gene016096.t1 MTR_2g016770 48.333 60 31 0 102 161 28 87 1.50e-15 73.6
MS.gene016096.t1 MTR_7g080020 47.619 63 32 1 99 161 491 552 1.87e-15 75.9
MS.gene016096.t1 MTR_7g080020 42.500 80 42 3 101 180 280 355 1.89e-11 64.3
MS.gene016096.t1 MTR_8g087000 48.333 60 31 0 102 161 78 137 1.99e-15 73.9
MS.gene016096.t1 MTR_8g087000 48.333 60 31 0 102 161 77 136 2.19e-15 73.6
MS.gene016096.t1 MTR_3g104750 46.667 60 31 1 99 158 102 160 3.69e-15 71.6
MS.gene016096.t1 MTR_7g080000 46.032 63 33 1 99 161 430 491 4.06e-15 75.1
MS.gene016096.t1 MTR_7g080000 40.741 81 44 3 100 180 233 309 6.45e-12 65.5
MS.gene016096.t1 MTR_3g108960 50.000 60 30 0 99 158 312 371 5.51e-15 74.3
MS.gene016096.t1 MTR_3g095080 44.615 65 35 1 99 163 142 205 6.04e-15 72.0
MS.gene016096.t1 MTR_5g043880 37.615 109 57 4 100 198 123 230 6.36e-15 72.8
MS.gene016096.t1 MTR_3g095080 44.615 65 35 1 99 163 166 229 6.40e-15 72.4
MS.gene016096.t1 MTR_8g007270 43.939 66 36 1 99 164 152 216 1.21e-14 71.2
MS.gene016096.t1 MTR_8g092140 43.077 65 36 1 99 163 158 221 1.62e-14 71.2
MS.gene016096.t1 MTR_1g077780 44.444 63 34 1 99 161 60 121 1.73e-14 69.3
MS.gene016096.t1 MTR_4g130900 46.032 63 33 1 99 161 357 418 1.84e-14 72.8
MS.gene016096.t1 MTR_7g109600 48.333 60 31 0 102 161 54 113 2.04e-14 71.2
MS.gene016096.t1 MTR_4g127040 47.541 61 32 0 99 159 243 303 2.64e-14 71.6
MS.gene016096.t1 MTR_2g083870 45.455 66 36 0 96 161 75 140 2.87e-14 70.9
MS.gene016096.t1 MTR_7g079040 29.193 161 87 4 45 195 115 258 7.07e-14 70.5
MS.gene016096.t1 MTR_4g047580 42.424 66 38 0 96 161 276 341 7.08e-14 71.2
MS.gene016096.t1 MTR_4g122530 40.506 79 44 2 83 161 192 267 7.23e-14 70.9
MS.gene016096.t1 MTR_2g032030 43.939 66 37 0 98 163 264 329 9.27e-14 70.9
MS.gene016096.t1 MTR_2g032030 43.939 66 37 0 98 163 264 329 9.80e-14 70.9
MS.gene016096.t1 MTR_8g096730 42.029 69 37 2 99 165 68 135 1.42e-13 66.6
MS.gene016096.t1 MTR_7g062220 50.877 57 27 1 102 158 125 180 1.64e-13 69.3
MS.gene016096.t1 MTR_8g028565 45.902 61 33 0 102 162 156 216 2.16e-13 69.3
MS.gene016096.t1 MTR_3g031220 50.000 60 28 2 102 161 199 256 3.52e-13 68.9
MS.gene016096.t1 MTR_8g092010 42.857 63 35 1 99 161 106 167 3.73e-13 66.6
MS.gene016096.t1 MTR_8g098945 42.169 83 43 1 102 184 130 207 3.88e-13 67.8
MS.gene016096.t1 MTR_3g095040 43.284 67 37 1 99 165 116 181 5.32e-13 66.6
MS.gene016096.t1 MTR_6g086555 34.737 95 58 3 68 161 175 266 7.26e-13 68.2
MS.gene016096.t1 MTR_5g074200 28.743 167 94 6 22 171 130 288 3.06e-12 65.9
MS.gene016096.t1 MTR_1g099600 43.333 60 34 0 102 161 186 245 3.60e-12 65.5
MS.gene016096.t1 MTR_8g067635 30.864 162 95 3 12 161 253 409 6.51e-12 65.5
MS.gene016096.t1 MTR_8g067650 47.619 63 33 0 99 161 337 399 8.57e-12 65.1
MS.gene016096.t1 MTR_6g053200 35.398 113 63 3 62 169 291 398 2.06e-11 63.9
MS.gene016096.t1 MTR_1g078260 35.870 92 55 3 69 159 217 305 3.63e-11 63.2
MS.gene016096.t1 MTR_8g069935 42.623 61 35 0 101 161 331 391 5.23e-11 62.8
MS.gene016096.t1 MTR_3g090860 33.333 105 66 2 100 200 132 236 5.64e-11 62.0
MS.gene016096.t1 MTR_3g009470 45.902 61 31 2 101 161 280 338 7.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016096.t1 AT1G80840 36.691 278 140 4 1 242 22 299 4.40e-46 156
MS.gene016096.t1 AT4G31800 45.714 175 79 3 66 240 84 242 3.79e-42 144
MS.gene016096.t1 AT4G31800 49.351 154 70 2 87 240 162 307 1.09e-41 145
MS.gene016096.t1 AT2G25000 36.923 260 115 8 6 244 39 270 6.13e-38 134
MS.gene016096.t1 AT2G25000 36.614 254 112 8 12 244 2 227 1.56e-37 132
MS.gene016096.t1 AT2G25000 36.614 254 112 8 12 244 2 227 1.56e-37 132
MS.gene016096.t1 AT2G25000 37.008 254 111 8 12 244 24 249 4.50e-37 131
MS.gene016096.t1 AT1G68150 42.105 114 64 1 48 161 184 295 3.57e-26 105
MS.gene016096.t1 AT4G04450 47.191 89 47 0 89 177 186 274 6.98e-26 105
MS.gene016096.t1 AT4G04450 47.191 89 47 0 89 177 280 368 1.67e-25 105
MS.gene016096.t1 AT4G22070 56.164 73 32 0 89 161 285 357 4.04e-25 103
MS.gene016096.t1 AT4G22070 56.164 73 32 0 89 161 285 357 4.04e-25 103
MS.gene016096.t1 AT4G22070 56.164 73 32 0 89 161 285 357 4.04e-25 103
MS.gene016096.t1 AT4G22070 56.164 73 32 0 89 161 285 357 4.04e-25 103
MS.gene016096.t1 AT1G62300 56.164 73 32 0 89 161 300 372 5.00e-25 103
MS.gene016096.t1 AT4G01720 31.250 208 91 5 6 161 92 299 1.08e-23 99.8
MS.gene016096.t1 AT5G15130 58.065 62 26 0 100 161 184 245 3.27e-23 98.6
MS.gene016096.t1 AT5G15130 58.065 62 26 0 100 161 226 287 3.50e-23 98.6
MS.gene016096.t1 AT1G18860 53.165 79 35 1 83 161 223 299 3.84e-23 98.2
MS.gene016096.t1 AT4G31800 75.000 52 13 0 87 138 162 213 5.30e-23 94.4
MS.gene016096.t1 AT1G69810 33.533 167 105 4 7 171 54 216 9.48e-23 95.5
MS.gene016096.t1 AT1G69810 33.533 167 105 4 7 171 112 274 1.43e-22 95.9
MS.gene016096.t1 AT2G04880 32.468 154 83 5 99 242 281 423 4.48e-19 86.3
MS.gene016096.t1 AT2G04880 42.857 63 34 2 99 161 109 169 2.23e-11 63.9
MS.gene016096.t1 AT2G04880 32.468 154 83 5 99 242 305 447 5.69e-19 86.3
MS.gene016096.t1 AT2G04880 42.857 63 34 2 99 161 109 169 2.46e-11 63.5
MS.gene016096.t1 AT3G04670 39.623 106 59 1 53 158 219 319 1.68e-18 83.6
MS.gene016096.t1 AT5G28650 37.168 113 66 1 46 158 212 319 7.34e-18 82.0
MS.gene016096.t1 AT2G38470 41.176 85 40 2 99 183 360 434 1.21e-17 82.4
MS.gene016096.t1 AT2G38470 40.506 79 37 3 91 161 166 242 7.25e-13 68.2
MS.gene016096.t1 AT5G56270 50.794 63 30 1 99 161 485 546 1.66e-17 82.0
MS.gene016096.t1 AT4G26640 41.667 96 50 2 71 161 170 264 2.09e-17 81.3
MS.gene016096.t1 AT4G26640 41.667 96 50 2 71 161 170 264 2.09e-17 81.3
MS.gene016096.t1 AT4G26640 41.667 96 50 2 71 161 170 264 2.09e-17 81.3
MS.gene016096.t1 AT4G26640 41.667 96 50 2 71 161 170 264 2.09e-17 81.3
MS.gene016096.t1 AT5G41570 41.000 100 49 4 59 158 65 154 2.49e-17 77.8
MS.gene016096.t1 AT1G64000 45.205 73 37 2 86 158 101 170 2.82e-17 77.8
MS.gene016096.t1 AT4G26640 41.667 96 50 2 71 161 274 368 3.14e-17 80.9
MS.gene016096.t1 AT4G26640 41.667 96 50 2 71 161 306 400 3.56e-17 80.9
MS.gene016096.t1 AT4G26640 41.667 96 50 2 71 161 346 440 3.69e-17 80.9
MS.gene016096.t1 AT2G03340 47.143 70 36 1 92 161 406 474 6.01e-17 80.1
MS.gene016096.t1 AT2G03340 37.736 106 55 5 65 161 205 308 1.14e-14 73.6
MS.gene016096.t1 AT1G29860 48.387 62 31 1 100 161 135 195 6.43e-17 78.6
MS.gene016096.t1 AT5G13080 50.000 60 29 1 99 158 65 123 1.21e-16 75.1
MS.gene016096.t1 AT2G30590 50.000 60 30 0 99 158 311 370 1.26e-16 79.0
MS.gene016096.t1 AT1G13960 45.714 70 37 1 92 161 247 315 1.46e-16 78.6
MS.gene016096.t1 AT1G13960 43.210 81 35 4 81 161 65 134 1.07e-12 67.4
MS.gene016096.t1 AT1G13960 47.619 63 32 1 99 161 407 468 1.51e-16 79.0
MS.gene016096.t1 AT1G13960 43.210 81 35 4 81 161 218 287 9.64e-13 67.8
MS.gene016096.t1 AT2G23320 49.153 59 30 0 102 160 241 299 1.53e-16 78.2
MS.gene016096.t1 AT3G62340 39.796 98 53 2 96 188 113 209 1.59e-16 77.4
MS.gene016096.t1 AT3G01080 45.714 70 37 1 92 161 297 365 2.06e-16 78.6
MS.gene016096.t1 AT3G01080 45.714 70 37 1 92 161 335 403 2.32e-16 78.6
MS.gene016096.t1 AT4G18170 45.161 62 33 1 100 161 171 231 2.70e-16 77.4
MS.gene016096.t1 AT2G47260 44.578 83 45 1 100 182 173 254 3.81e-16 77.0
MS.gene016096.t1 AT2G24570 48.333 60 31 0 99 158 241 300 8.08e-16 76.3
MS.gene016096.t1 AT2G30250 40.698 86 48 2 76 161 305 387 8.98e-16 76.6
MS.gene016096.t1 AT2G30250 39.130 92 44 3 102 193 167 246 9.57e-12 64.7
MS.gene016096.t1 AT4G31550 48.333 60 31 0 99 158 244 303 9.96e-16 75.9
MS.gene016096.t1 AT4G31550 48.333 60 31 0 99 158 243 302 1.05e-15 75.9
MS.gene016096.t1 AT4G24240 45.161 62 34 0 99 160 279 340 1.15e-15 75.9
MS.gene016096.t1 AT3G01970 46.377 69 34 2 99 165 63 130 1.22e-15 72.4
MS.gene016096.t1 AT5G49520 46.774 62 32 1 100 161 220 280 1.26e-15 76.3
MS.gene016096.t1 AT5G26170 43.750 64 35 1 99 162 111 173 1.86e-15 72.4
MS.gene016096.t1 AT5G07100 42.029 69 39 1 99 167 139 206 2.10e-15 73.2
MS.gene016096.t1 AT5G07100 48.571 70 34 2 102 171 25 92 3.92e-13 67.0
MS.gene016096.t1 AT5G07100 42.029 69 39 1 99 167 139 206 2.10e-15 73.2
MS.gene016096.t1 AT5G07100 48.571 70 34 2 102 171 25 92 3.92e-13 67.0
MS.gene016096.t1 AT5G07100 42.029 69 39 1 99 167 139 206 2.10e-15 73.2
MS.gene016096.t1 AT5G07100 48.571 70 34 2 102 171 25 92 3.92e-13 67.0
MS.gene016096.t1 AT5G07100 42.029 69 39 1 99 167 139 206 2.10e-15 73.2
MS.gene016096.t1 AT5G07100 48.571 70 34 2 102 171 25 92 3.92e-13 67.0
MS.gene016096.t1 AT2G37260 38.095 105 59 2 54 158 227 325 2.57e-15 74.7
MS.gene016096.t1 AT2G37260 47.541 61 30 2 102 162 86 144 1.65e-12 66.6
MS.gene016096.t1 AT2G37260 38.095 105 59 2 54 158 225 323 2.59e-15 74.7
MS.gene016096.t1 AT2G37260 47.541 61 30 2 102 162 84 142 1.73e-12 66.6
MS.gene016096.t1 AT2G46130 39.560 91 46 3 68 158 5 86 2.73e-15 70.5
MS.gene016096.t1 AT5G46350 43.548 62 34 1 100 161 182 242 3.43e-15 74.3
MS.gene016096.t1 AT5G07100 44.444 63 34 1 99 161 232 293 3.45e-15 74.3
MS.gene016096.t1 AT5G07100 48.571 70 34 2 102 171 118 185 1.03e-12 67.0
MS.gene016096.t1 AT2G37260 47.059 68 35 1 91 158 339 405 3.59e-15 74.7
MS.gene016096.t1 AT2G37260 47.541 61 30 2 102 162 166 224 1.57e-12 67.0
MS.gene016096.t1 AT2G44745 43.478 69 38 1 99 167 143 210 4.22e-15 72.4
MS.gene016096.t1 AT4G30935 44.595 74 38 2 99 170 329 401 4.64e-15 74.7
MS.gene016096.t1 AT1G55600 51.667 60 28 1 102 161 308 366 6.33e-15 74.3
MS.gene016096.t1 AT1G29280 46.667 60 32 0 102 161 75 134 6.97e-15 72.8
MS.gene016096.t1 AT1G69310 46.154 65 31 2 100 161 146 209 1.00e-14 72.4
MS.gene016096.t1 AT1G69310 46.154 65 31 2 100 161 146 209 1.00e-14 72.4
MS.gene016096.t1 AT1G69310 46.154 65 31 2 100 161 146 209 1.00e-14 72.4
MS.gene016096.t1 AT2G21900 40.260 77 45 1 85 161 93 168 1.69e-14 70.5
MS.gene016096.t1 AT4G26440 44.872 78 40 2 99 176 370 444 3.12e-14 72.4
MS.gene016096.t1 AT4G26440 33.628 113 64 4 102 209 179 285 5.10e-11 62.8
MS.gene016096.t1 AT4G39410 43.077 65 36 1 99 163 221 284 6.93e-14 70.5
MS.gene016096.t1 AT3G58710 37.634 93 58 0 72 164 41 133 8.32e-14 69.7
MS.gene016096.t1 AT3G58710 47.619 63 33 0 102 164 72 134 8.66e-14 69.7
MS.gene016096.t1 AT2G34830 43.939 66 37 0 98 163 212 277 1.33e-13 70.1
MS.gene016096.t1 AT2G34830 43.939 66 37 0 98 163 221 286 1.42e-13 70.1
MS.gene016096.t1 AT5G43290 43.077 65 36 1 94 158 107 170 2.40e-13 68.6
MS.gene016096.t1 AT1G30650 45.312 64 35 0 98 161 214 277 2.86e-13 69.3
MS.gene016096.t1 AT5G64810 41.667 60 34 1 99 158 108 166 3.85e-13 66.6
MS.gene016096.t1 AT4G01250 41.176 85 49 1 102 185 129 213 7.30e-13 67.4
MS.gene016096.t1 AT4G23550 41.270 63 37 0 99 161 138 200 3.95e-12 65.5
MS.gene016096.t1 AT5G52830 46.667 60 32 0 102 161 166 225 3.96e-12 65.5
MS.gene016096.t1 AT5G45050 45.000 60 33 0 102 161 1181 1240 7.27e-12 65.5
MS.gene016096.t1 AT5G45050 45.000 60 33 0 102 161 1153 1212 7.38e-12 65.5
MS.gene016096.t1 AT5G45050 45.000 60 33 0 102 161 1042 1101 7.50e-12 65.5
MS.gene016096.t1 AT2G46400 37.000 100 56 3 85 182 90 184 3.52e-11 62.4
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 4.65e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 4.65e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 5.16e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 5.35e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 5.35e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 5.43e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 5.43e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 392 493 5.46e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 5.53e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 5.63e-11 63.2
MS.gene016096.t1 AT4G12020 31.731 104 69 2 92 195 459 560 6.11e-11 62.8

Find 40 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGTTCAAATCATCAAAT+TGG 0.248317 1.2:+7860187 MS.gene016096:CDS
CATACCAAACTTTCATCATT+AGG 0.285634 1.2:-7860298 None:intergenic
TTAGAGATTGATGAACCTTT+AGG 0.306541 1.2:-7860877 None:intergenic
CTTCTCCTAGAGCTTACTTT+AGG 0.314347 1.2:+7860571 MS.gene016096:CDS
TGAAGTCAGGATCTTTGATT+AGG 0.319072 1.2:-7861017 None:intergenic
AAATCTCGATTTGAATCTTT+CGG 0.326816 1.2:+7861104 MS.gene016096:CDS
CTCACAAAGTCTAGTATTTG+TGG 0.333230 1.2:-7860935 None:intergenic
TCAACCTAATGATGAAAGTT+TGG 0.350703 1.2:+7860294 MS.gene016096:CDS
GGCTATCAATGGAGGAAGTA+TGG 0.366288 1.2:+7860525 MS.gene016096:CDS
ACTTCAAATGGCTATTAGAA+TGG 0.367090 1.2:+7859817 None:intergenic
TCTAGGAGAAGCATTGTCTT+TGG 0.371896 1.2:-7860559 None:intergenic
TCTTTGTCATTCAATGTTGT+TGG 0.386703 1.2:-7860910 None:intergenic
GATGGTTTGAATGACTCATT+AGG 0.404082 1.2:-7860844 None:intergenic
TCATCTTCAAGAAATCAAAA+AGG 0.410845 1.2:+7860147 MS.gene016096:CDS
GGCTATTAGAATGGATGATA+AGG 0.430275 1.2:+7859826 MS.gene016096:CDS
GAAGTCAGGATCTTTGATTA+GGG 0.432423 1.2:-7861016 None:intergenic
TAAGTTCAAATCATCAAATT+GGG 0.447315 1.2:+7860188 MS.gene016096:CDS
ATCCTTGTTGCAACATATGA+TGG 0.459740 1.2:+7860802 MS.gene016096:CDS
GCTAATGCTGCAGTGAAGTC+AGG 0.465446 1.2:-7861030 None:intergenic
ATGGAGGAAGTATGGTCAAA+AGG 0.476669 1.2:+7860533 MS.gene016096:CDS
CCATCTTCATCCACACCTAA+AGG 0.490427 1.2:+7860862 MS.gene016096:CDS
AATATATAGATAATAAAAGA+TGG 0.494453 1.2:+7860504 MS.gene016096:intron
TGCGGGGCAACTAGGAGCCA+TGG 0.508480 1.2:-7860598 None:intergenic
AGCTTACTTTAGGTGCTCCA+TGG 0.512350 1.2:+7860581 MS.gene016096:CDS
GAGAATGTCATGCAACAGTT+TGG 0.514761 1.2:+7860955 MS.gene016096:CDS
CTTATGTTCTTGATCAGTGA+CGG 0.524464 1.2:-7861070 None:intergenic
GTCATGCAACAGTTTGGCTA+TGG 0.529941 1.2:+7860961 MS.gene016096:CDS
TAATAAAAGATGGCTATCAA+TGG 0.531094 1.2:+7860514 MS.gene016096:CDS
CCTTTAGGTGTGGATGAAGA+TGG 0.531585 1.2:-7860862 None:intergenic
GAGCACCTAAAGTAAGCTCT+AGG 0.566462 1.2:-7860576 None:intergenic
GTTCGTACAAAGACTTGTAG+TGG 0.571338 1.2:-7860271 None:intergenic
TGCAACAGTTTGGCTATGGA+AGG 0.583957 1.2:+7860965 MS.gene016096:CDS
CTCCATCATATGTTGCAACA+AGG 0.587646 1.2:-7860804 None:intergenic
AGAGTTACAACAAGTGAGAG+AGG 0.590536 1.2:+7860063 MS.gene016096:CDS
TCTCGATTTGAATCTTTCGG+AGG 0.620338 1.2:+7861107 MS.gene016096:CDS
TAAAAGATGGCTATCAATGG+AGG 0.624488 1.2:+7860517 MS.gene016096:CDS
GATTGATGAACCTTTAGGTG+TGG 0.626271 1.2:-7860872 None:intergenic
TATGATGGAGAGCACAACCA+TGG 0.692151 1.2:+7860817 MS.gene016096:CDS
ATGACTCATTAGGAACACCA+TGG 0.708357 1.2:-7860834 None:intergenic
GATCAAGAACATAAGCGACA+AGG 0.725331 1.2:+7861078 MS.gene016096:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATAGATAATAAAAGA+TGG + chr1.2:7860504-7860523 MS.gene016096:intron 10.0%
!!! ATCTTTTAATTTTGCTTATT+AGG + chr1.2:7859962-7859981 MS.gene016096:intron 15.0%
!!! TTACTTCATTTACTAATTTT+AGG + chr1.2:7860753-7860772 MS.gene016096:intron 15.0%
!! ATAAGTTCAAATCATCAAAT+TGG + chr1.2:7860187-7860206 MS.gene016096:CDS 20.0%
!! ATGATAAGGTAACTAATTAT+TGG + chr1.2:7859840-7859859 MS.gene016096:intron 20.0%
!! TAAGTTCAAATCATCAAATT+GGG + chr1.2:7860188-7860207 MS.gene016096:CDS 20.0%
!! TGATTCTATGAAAAAAATTG+TGG + chr1.2:7860712-7860731 MS.gene016096:intron 20.0%
!!! AGGTATATACATATTTTATG+TGG + chr1.2:7860628-7860647 MS.gene016096:intron 20.0%
!!! ATTGGTTTTTTTTTTGTTGA+AGG + chr1.2:7859858-7859877 MS.gene016096:intron 20.0%
!!! TTAACAATTTTGATGTGTTT+AGG + chr1.2:7860024-7860043 MS.gene016096:intron 20.0%
!!! TTTTTTGTTGAAGGAATTAT+TGG + chr1.2:7859867-7859886 MS.gene016096:intron 20.0%
! AAATCAAAAAGGAAGAACAT+AGG + chr1.2:7860158-7860177 MS.gene016096:CDS 25.0%
! AATCAAAAAGGAAGAACATA+GGG + chr1.2:7860159-7860178 MS.gene016096:CDS 25.0%
! GGTTTCTTATTATACTTAGT+AGG + chr1.2:7859888-7859907 MS.gene016096:intron 25.0%
! TAATAAAAGATGGCTATCAA+TGG + chr1.2:7860514-7860533 MS.gene016096:CDS 25.0%
! TCATCTTCAAGAAATCAAAA+AGG + chr1.2:7860147-7860166 MS.gene016096:CDS 25.0%
! TGCAAAAATGCATAAATGAT+AGG + chr1.2:7860776-7860795 MS.gene016096:CDS 25.0%
!! AAATCTCGATTTGAATCTTT+CGG + chr1.2:7861104-7861123 MS.gene016096:CDS 25.0%
!! ACAACAAATTAGTGATAATG+AGG - chr1.2:7860324-7860343 None:intergenic 25.0%
!!! TGTATATACCTTCTTTTTTG+CGG - chr1.2:7860619-7860638 None:intergenic 25.0%
ATCAAAAAGGAAGAACATAG+GGG + chr1.2:7860160-7860179 MS.gene016096:CDS 30.0%
CATACCAAACTTTCATCATT+AGG - chr1.2:7860301-7860320 None:intergenic 30.0%
TCAACCTAATGATGAAAGTT+TGG + chr1.2:7860294-7860313 MS.gene016096:CDS 30.0%
TCTTTGTCATTCAATGTTGT+TGG - chr1.2:7860913-7860932 None:intergenic 30.0%
TGATTTCAAGAAAGCTTACA+AGG + chr1.2:7860664-7860683 MS.gene016096:intron 30.0%
TTAGAGATTGATGAACCTTT+AGG - chr1.2:7860880-7860899 None:intergenic 30.0%
! CTTTTGCTTGAATCAATGTT+AGG - chr1.2:7860220-7860239 None:intergenic 30.0%
!! ACAATTTTGATGTGTTTAGG+TGG + chr1.2:7860027-7860046 MS.gene016096:intron 30.0%
!!! GTATATACCTTCTTTTTTGC+GGG - chr1.2:7860618-7860637 None:intergenic 30.0%
!!! TATATACCTTCTTTTTTGCG+GGG - chr1.2:7860617-7860636 None:intergenic 30.0%
ATCCTTGTTGCAACATATGA+TGG + chr1.2:7860802-7860821 MS.gene016096:CDS 35.0%
CTCACAAAGTCTAGTATTTG+TGG - chr1.2:7860938-7860957 None:intergenic 35.0%
CTTATGTTCTTGATCAGTGA+CGG - chr1.2:7861073-7861092 None:intergenic 35.0%
GAAGTCAGGATCTTTGATTA+GGG - chr1.2:7861019-7861038 None:intergenic 35.0%
GATGGTTTGAATGACTCATT+AGG - chr1.2:7860847-7860866 None:intergenic 35.0%
GGCTATTAGAATGGATGATA+AGG + chr1.2:7859826-7859845 MS.gene016096:CDS 35.0%
TAAAAGATGGCTATCAATGG+AGG + chr1.2:7860517-7860536 MS.gene016096:CDS 35.0%
TGAAGTCAGGATCTTTGATT+AGG - chr1.2:7861020-7861039 None:intergenic 35.0%
AGAGTTACAACAAGTGAGAG+AGG + chr1.2:7860063-7860082 MS.gene016096:CDS 40.0%
ATGACTCATTAGGAACACCA+TGG - chr1.2:7860837-7860856 None:intergenic 40.0%
CTCCATCATATGTTGCAACA+AGG - chr1.2:7860807-7860826 None:intergenic 40.0%
CTTCTCCTAGAGCTTACTTT+AGG + chr1.2:7860571-7860590 MS.gene016096:CDS 40.0%
GAGAATGTCATGCAACAGTT+TGG + chr1.2:7860955-7860974 MS.gene016096:CDS 40.0%
GATCAAGAACATAAGCGACA+AGG + chr1.2:7861078-7861097 MS.gene016096:CDS 40.0%
GATTGATGAACCTTTAGGTG+TGG - chr1.2:7860875-7860894 None:intergenic 40.0%
GTTCGTACAAAGACTTGTAG+TGG - chr1.2:7860274-7860293 None:intergenic 40.0%
! ATGGAGGAAGTATGGTCAAA+AGG + chr1.2:7860533-7860552 MS.gene016096:CDS 40.0%
! TCTCGATTTGAATCTTTCGG+AGG + chr1.2:7861107-7861126 MS.gene016096:CDS 40.0%
!! TCTAGGAGAAGCATTGTCTT+TGG - chr1.2:7860562-7860581 None:intergenic 40.0%
AGCTTACTTTAGGTGCTCCA+TGG + chr1.2:7860581-7860600 MS.gene016096:CDS 45.0%
CCATCTTCATCCACACCTAA+AGG + chr1.2:7860862-7860881 MS.gene016096:CDS 45.0%
CCTTTAGGTGTGGATGAAGA+TGG - chr1.2:7860865-7860884 None:intergenic 45.0%
GAGCACCTAAAGTAAGCTCT+AGG - chr1.2:7860579-7860598 None:intergenic 45.0%
GGCTATCAATGGAGGAAGTA+TGG + chr1.2:7860525-7860544 MS.gene016096:CDS 45.0%
GTCATGCAACAGTTTGGCTA+TGG + chr1.2:7860961-7860980 MS.gene016096:CDS 45.0%
TAGTTGCCCCGCAAAAAAGA+AGG + chr1.2:7860608-7860627 MS.gene016096:CDS 45.0%
TGCAACAGTTTGGCTATGGA+AGG + chr1.2:7860965-7860984 MS.gene016096:CDS 45.0%
! TATGATGGAGAGCACAACCA+TGG + chr1.2:7860817-7860836 MS.gene016096:CDS 45.0%
! TGTAGTGGCTTTTGTGCTGT+GGG - chr1.2:7860259-7860278 None:intergenic 45.0%
! TTGTAGTGGCTTTTGTGCTG+TGG - chr1.2:7860260-7860279 None:intergenic 45.0%
!!! TTCTTTTTTGCGGGGCAACT+AGG - chr1.2:7860609-7860628 None:intergenic 45.0%
!! AAAATAAAAAATCAATTATT+TGG + chr1.2:7860436-7860455 MS.gene016096:intron 5.0%
GCTAATGCTGCAGTGAAGTC+AGG - chr1.2:7861033-7861052 None:intergenic 50.0%
TGCGGGGCAACTAGGAGCCA+TGG - chr1.2:7860601-7860620 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 7859824 7861134 7859824 ID=MS.gene016096
chr1.2 mRNA 7859824 7861134 7859824 ID=MS.gene016096.t1;Parent=MS.gene016096
chr1.2 exon 7859824 7859847 7859824 ID=MS.gene016096.t1.exon1;Parent=MS.gene016096.t1
chr1.2 CDS 7859824 7859847 7859824 ID=cds.MS.gene016096.t1;Parent=MS.gene016096.t1
chr1.2 exon 7860046 7860315 7860046 ID=MS.gene016096.t1.exon2;Parent=MS.gene016096.t1
chr1.2 CDS 7860046 7860315 7860046 ID=cds.MS.gene016096.t1;Parent=MS.gene016096.t1
chr1.2 exon 7860513 7860629 7860513 ID=MS.gene016096.t1.exon3;Parent=MS.gene016096.t1
chr1.2 CDS 7860513 7860629 7860513 ID=cds.MS.gene016096.t1;Parent=MS.gene016096.t1
chr1.2 exon 7860775 7861134 7860775 ID=MS.gene016096.t1.exon4;Parent=MS.gene016096.t1
chr1.2 CDS 7860775 7861134 7860775 ID=cds.MS.gene016096.t1;Parent=MS.gene016096.t1
Gene Sequence

>MS.gene016096

ATGGCTATTAGAATGGATGATAAGGTAACTAATTATTGGTTTTTTTTTTGTTGAAGGAATTATTGGTTTCTTATTATACTTAGTAGGAACATCTCATTCTAATGAACATCTTTTTTATTTTTTATTTTTTTTACTTACATCTTTTAATTTTGCTTATTAGGAACACATGCATGCAACTAATTCTAAAAGCTCATAATTAATTAACAATTTTGATGTGTTTAGGTGGAAACTCTTGAATTAGAGTTACAACAAGTGAGAGAGGAGAACAATACTCTAAGATTCATGCTTGAAGTTATGAGTATCAAATGCACAAAGCTTGAATCTCATCTTCAAGAAATCAAAAAGGAAGAACATAGGGGAATCATAAGTTCAAATCATCAAATTGGGTCAATACCTAACATTGATTCAAGCAAAAGAGCAAGACTAGAGATTCCCACAGCACAAAAGCCACTACAAGTCTTTGTACGAACTCAACCTAATGATGAAAGTTTGGTATGCCTCATTATCACTAATTTGTTGTGTATCAAATTAATTAATTAATCTCAAATTATCACAAAATTTGAGCAAATCACTTTAAAGAATACATAAAATAATATCACTCATTGATAAAAAAAAATAAAAAATCAATTATTTGGTCTCAAATTACATTTTTTAATATCAATTATTGATTTTTTTTTTTTAATATATAGATAATAAAAGATGGCTATCAATGGAGGAAGTATGGTCAAAAGGTTACCAAAGACAATGCTTCTCCTAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCCCGCAAAAAAGAAGGTATATACATATTTTATGTGGATATATATGCATATGATTTCAAGAAAGCTTACAAGGTTATTATATGATGCGTTTTTATGAATGATTCTATGAAAAAAATTGTGGTTTAAAGAGATTCTAACGTTACTTCATTTACTAATTTTAGGTGCAAAAATGCATAAATGATAGGTCTATCCTTGTTGCAACATATGATGGAGAGCACAACCATGGTGTTCCTAATGAGTCATTCAAACCATCTTCATCCACACCTAAAGGTTCATCAATCTCTAATAATAAATTACCAACAACATTGAATGACAAAGAAGCCACAAATACTAGACTTTGTGAGAATGTCATGCAACAGTTTGGCTATGGAAGGCACATTAAAATTGAAGAATATGCAAGTTCCCTAATCAAAGATCCTGACTTCACTGCAGCATTAGCTGAAGCAGTTGCTCGAACCGTCACTGATCAAGAACATAAGCGACAAGGTCTAAATCTCGATTTGAATCTTTCGGAGGAGTGA
Protein sequence

>MS.gene016096.t1

MAIRMDDKVETLELELQQVREENNTLRFMLEVMSIKCTKLESHLQEIKKEEHRGIISSNHQIGSIPNIDSSKRARLEIPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCPAKKKVQKCINDRSILVATYDGEHNHGVPNESFKPSSSTPKGSSISNNKLPTTLNDKEATNTRLCENVMQQFGYGRHIKIEEYASSLIKDPDFTAALAEAVARTVTDQEHKRQGLNLDLNLSEE