AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016116

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016116.t1 MTR_1g013450 95.570 316 14 0 1 316 1 316 0.0 633
MS.gene016116.t1 MTR_3g105710 55.077 325 102 8 1 316 1 290 1.30e-102 302
MS.gene016116.t1 MTR_4g128930 46.089 358 144 7 4 315 20 374 1.66e-94 285
MS.gene016116.t1 MTR_7g018170 62.500 88 33 0 4 91 24 111 8.05e-35 130
MS.gene016116.t1 MTR_7g018170 66.216 74 17 1 250 315 322 395 1.15e-23 100
MS.gene016116.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 1.75e-22 95.1
MS.gene016116.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 3.10e-22 92.4
MS.gene016116.t1 MTR_5g069480 32.164 171 105 3 5 171 4 167 7.50e-21 90.9
MS.gene016116.t1 MTR_5g069480 32.164 171 105 3 5 171 4 167 7.77e-21 92.4
MS.gene016116.t1 MTR_5g021580 44.565 92 41 2 5 88 4 93 4.58e-19 83.6
MS.gene016116.t1 MTR_5g021580 44.211 95 43 2 5 91 4 96 5.32e-19 83.6
MS.gene016116.t1 MTR_4g071200 43.299 97 45 1 6 92 5 101 8.18e-19 84.0
MS.gene016116.t1 MTR_2g073370 41.667 96 47 1 6 92 5 100 5.06e-18 83.2
MS.gene016116.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.21e-18 81.6
MS.gene016116.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.45e-18 81.6
MS.gene016116.t1 MTR_3g117320 40.000 105 53 1 6 100 5 109 1.12e-17 80.9
MS.gene016116.t1 MTR_3g082630 41.111 90 52 1 5 94 4 92 2.06e-17 82.4
MS.gene016116.t1 MTR_3g113070 32.394 142 79 2 6 136 5 140 8.14e-17 78.6
MS.gene016116.t1 MTR_7g108150 39.326 89 53 1 6 94 20 107 8.74e-17 80.5
MS.gene016116.t1 MTR_7g108150 35.659 129 69 4 171 296 252 369 7.51e-12 65.9
MS.gene016116.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 9.54e-16 75.9
MS.gene016116.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 9.67e-16 75.9
MS.gene016116.t1 MTR_7g083540 38.710 93 52 1 6 98 5 92 2.26e-14 73.6
MS.gene016116.t1 MTR_3g034680 60.000 45 18 0 50 94 11 55 7.65e-14 66.6
MS.gene016116.t1 MTR_2g088900 39.560 91 52 1 5 95 100 187 4.03e-13 70.1
MS.gene016116.t1 MTR_5g072780 49.275 69 32 1 232 297 148 216 8.30e-13 67.0
MS.gene016116.t1 MTR_1g109350 36.486 74 47 0 4 77 3 76 1.94e-12 67.4
MS.gene016116.t1 MTR_1g110870 46.341 82 37 2 221 300 351 427 1.43e-11 65.1
MS.gene016116.t1 MTR_8g104190 68.182 44 14 0 255 298 358 401 2.30e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016116.t1 AT5G24930 53.693 352 101 14 1 301 1 341 1.28e-96 290
MS.gene016116.t1 AT2G24790 53.074 309 103 11 2 303 4 277 8.56e-95 283
MS.gene016116.t1 AT3G02380 42.730 337 164 7 4 315 14 346 1.31e-82 253
MS.gene016116.t1 AT5G57660 43.103 348 153 10 2 315 18 354 3.35e-73 229
MS.gene016116.t1 AT5G15850 40.805 348 163 10 6 315 12 354 9.30e-70 221
MS.gene016116.t1 AT5G15840 38.843 363 159 13 6 315 20 372 4.24e-69 220
MS.gene016116.t1 AT2G24790 50.237 211 74 7 2 207 4 188 9.49e-58 186
MS.gene016116.t1 AT5G15840 44.681 141 53 3 6 125 20 156 4.07e-34 126
MS.gene016116.t1 AT4G15250 27.381 336 182 10 6 299 5 320 2.44e-21 92.8
MS.gene016116.t1 AT2G21320 44.211 95 43 2 5 91 4 96 5.88e-19 83.2
MS.gene016116.t1 AT4G38960 43.158 95 44 2 5 91 4 96 1.01e-18 82.8
MS.gene016116.t1 AT4G38960 43.158 95 44 2 5 91 4 96 1.01e-18 82.8
MS.gene016116.t1 AT1G78600 42.708 96 46 1 6 92 5 100 1.95e-18 84.3
MS.gene016116.t1 AT1G78600 42.708 96 46 1 6 92 5 100 2.71e-18 84.3
MS.gene016116.t1 AT1G75540 40.404 99 47 1 6 92 5 103 1.35e-17 82.4
MS.gene016116.t1 AT2G47890 40.659 91 52 1 4 94 11 99 1.55e-17 82.0
MS.gene016116.t1 AT2G47890 40.659 91 52 1 4 94 11 99 1.69e-17 82.0
MS.gene016116.t1 AT2G47890 27.508 309 178 11 5 299 55 331 1.23e-13 70.9
MS.gene016116.t1 AT2G47890 40.659 91 52 1 4 94 11 99 2.52e-17 80.1
MS.gene016116.t1 AT2G33500 40.449 89 53 0 6 94 12 100 4.83e-17 81.6
MS.gene016116.t1 AT2G33500 50.794 63 30 1 238 299 339 401 6.08e-11 63.2
MS.gene016116.t1 AT2G33500 40.449 89 53 0 6 94 12 100 5.03e-17 81.3
MS.gene016116.t1 AT2G33500 50.794 63 30 1 238 299 338 400 6.01e-11 63.2
MS.gene016116.t1 AT1G06040 43.478 92 43 1 6 88 5 96 1.24e-16 78.6
MS.gene016116.t1 AT1G06040 43.478 92 43 1 6 88 5 96 2.03e-16 76.3
MS.gene016116.t1 AT1G28050 40.449 89 53 0 6 94 9 97 2.08e-16 79.7
MS.gene016116.t1 AT5G48250 42.667 75 43 0 5 79 4 78 2.32e-16 79.3
MS.gene016116.t1 AT2G31380 29.798 198 79 6 6 143 5 202 8.22e-16 75.9
MS.gene016116.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.41e-15 76.3
MS.gene016116.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.41e-15 76.3
MS.gene016116.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.41e-15 76.3
MS.gene016116.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.41e-15 76.3
MS.gene016116.t1 AT4G39070 38.776 98 50 1 5 92 4 101 2.33e-14 72.0
MS.gene016116.t1 AT1G68190 38.961 77 47 0 4 80 12 88 7.22e-14 72.0
MS.gene016116.t1 AT1G68190 38.961 77 47 0 4 80 12 88 7.22e-14 72.0
MS.gene016116.t1 AT1G68190 38.961 77 47 0 4 80 41 117 8.06e-14 72.0
MS.gene016116.t1 AT1G49130 53.968 63 29 0 236 298 259 321 1.17e-13 70.9
MS.gene016116.t1 AT1G49130 53.968 63 29 0 236 298 252 314 1.24e-13 70.9
MS.gene016116.t1 AT4G10240 36.275 102 46 2 6 92 5 102 2.15e-13 67.4
MS.gene016116.t1 AT1G73870 70.213 47 14 0 254 300 344 390 2.22e-13 70.5
MS.gene016116.t1 AT3G21880 36.364 88 46 1 6 83 5 92 7.26e-13 68.9
MS.gene016116.t1 AT3G21880 36.364 88 46 1 6 83 9 96 7.32e-13 68.9
MS.gene016116.t1 AT3G21880 36.364 88 46 1 6 83 9 96 7.32e-13 68.9
MS.gene016116.t1 AT1G68520 64.583 48 17 0 255 302 357 404 5.28e-12 66.6
MS.gene016116.t1 AT5G14370 66.667 45 15 0 255 299 294 338 1.05e-11 65.5
MS.gene016116.t1 AT1G25440 69.767 43 13 0 255 297 361 403 3.01e-11 64.3

Find 86 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGAGATCAGGGAATTT+AGG 0.162993 1.2:-7527168 None:intergenic
GCAAACCTTCCTTTAATTCT+AGG 0.177262 1.2:-7527743 None:intergenic
AGCAGCTGCGTCGGCTTTGC+AGG 0.207136 1.2:-7526956 None:intergenic
GAAACTCGACCTAGAATTAA+AGG 0.252531 1.2:+7527734 MS.gene016116:CDS
ATTTAGGGTTTGAAGGAGTT+TGG 0.272290 1.2:-7527152 None:intergenic
AATTGAGATCAGGGAATTTA+GGG 0.282604 1.2:-7527167 None:intergenic
GTGACGAAATCGTCAATTTC+GGG 0.319268 1.2:-7527207 None:intergenic
TGTTGCTTTGGATGACTTGC+AGG 0.340517 1.2:-7526800 None:intergenic
AAGAAGCAGAAGCTGCTTCC+TGG 0.355450 1.2:+7527124 MS.gene016116:CDS
TCAGGGAATTTAGGGTTTGA+AGG 0.367060 1.2:-7527159 None:intergenic
AGTGACGAAATCGTCAATTT+CGG 0.368521 1.2:-7527208 None:intergenic
GACGCCATCTGCGGTGGTGC+CGG 0.374473 1.2:-7527268 None:intergenic
CACCGCAGATGGCGTCGTTC+CGG 0.376246 1.2:+7527275 MS.gene016116:CDS
GTGGCGGGAGGCGAGTTTGT+TGG 0.388480 1.2:-7526884 None:intergenic
GCTGTTGTTGTGGTGGTGGA+AGG 0.394821 1.2:-7527055 None:intergenic
GAGAGAAAAGAAAGAATAGA+AGG 0.401420 1.2:+7527669 MS.gene016116:CDS
GAGTGTGACGCGGTGGTGGC+GGG 0.403622 1.2:-7526899 None:intergenic
TAGTGAGAGTAATTGAGATC+AGG 0.412297 1.2:-7527177 None:intergenic
ACGGCAGAATAGTGTTGCTT+TGG 0.415438 1.2:-7526812 None:intergenic
CAGAGAAGAATGATTGTTGT+TGG 0.418301 1.2:-7527077 None:intergenic
AGCTTCTGCTTCTTCGTTGG+TGG 0.421356 1.2:-7527115 None:intergenic
CCGTCTCTGTCGCCGTCGTT+TGG 0.426542 1.2:-7527583 None:intergenic
ACGCCATCTGCGGTGGTGCC+GGG 0.428709 1.2:-7527267 None:intergenic
AGAGTGTGACGCGGTGGTGG+CGG 0.429623 1.2:-7526900 None:intergenic
AACTTCATACATAGTTCAAC+AGG 0.431616 1.2:-7527825 None:intergenic
AGTGAGAGTAATTGAGATCA+GGG 0.433298 1.2:-7527176 None:intergenic
TCCGTCATCACGTTTCCGTC+TGG 0.440194 1.2:-7527542 None:intergenic
TTAATTGCAGAGGACGAATA+CGG 0.440777 1.2:+7527791 MS.gene016116:CDS
CGTTCGTGGCGGCGAGCTAG+TGG 0.441707 1.2:-7527018 None:intergenic
GTTGTTGTGGTGGTGGAAGG+TGG 0.443643 1.2:-7527052 None:intergenic
ATCGGAACCGCCACCGTCAT+CGG 0.447848 1.2:-7527608 None:intergenic
CCGGAGCTTGTTCACAGACT+TGG 0.464846 1.2:-7526924 None:intergenic
TTAGGTATCTTCGCCGTCGA+TGG 0.464857 1.2:+7527505 MS.gene016116:intron
TGGTGGTGGAAGGTGGTGAG+AGG 0.469506 1.2:-7527045 None:intergenic
TCTCTTTCCACCGCCGTCAT+CGG 0.470887 1.2:-7527626 None:intergenic
GTTGGCTGTTGTTGTGGTGG+TGG 0.471357 1.2:-7527059 None:intergenic
AGCAGCTTCTGCTTCTTCGT+TGG 0.474181 1.2:-7527118 None:intergenic
GCTTTGCAGGTGACGTGAGC+CGG 0.474575 1.2:-7526943 None:intergenic
GGCGGTTCCGATGACGGCGG+TGG 0.476197 1.2:+7527619 MS.gene016116:CDS
GACGGTGGCGGTTCCGATGA+CGG 0.482863 1.2:+7527613 MS.gene016116:CDS
GTTGTTGGCTGTTGTTGTGG+TGG 0.504240 1.2:-7527062 None:intergenic
TGAAGGAGTTTGGAGAAGCC+AGG 0.505414 1.2:-7527142 None:intergenic
GGCAGAGTGTGACGCGGTGG+TGG 0.506125 1.2:-7526903 None:intergenic
GTAGTGTTCGTGTTCGTGTT+CGG 0.509358 1.2:-7527322 None:intergenic
TGGTGAGAGGGACACGTTCG+TGG 0.516914 1.2:-7527032 None:intergenic
GGTATCTTCGCCGTCGATGG+AGG 0.526645 1.2:+7527508 MS.gene016116:intron
CCAAGTCTGTGAACAAGCTC+CGG 0.534270 1.2:+7526924 MS.gene016116:CDS
TTCGTGTTCGTGTTCGGTGG+TGG 0.536195 1.2:-7527316 None:intergenic
AGTCCCGGCACCACCGCAGA+TGG 0.542153 1.2:+7527264 MS.gene016116:CDS
CGGCGGTGGAAAGAGAAGCT+AGG 0.543681 1.2:+7527633 MS.gene016116:CDS
GTTCGTGGCGGCGAGCTAGT+GGG 0.545982 1.2:-7527017 None:intergenic
AAATATGAATTTAATTGCAG+AGG 0.547255 1.2:+7527781 MS.gene016116:CDS
GGTGGTGGAAGGTGGTGAGA+GGG 0.548296 1.2:-7527044 None:intergenic
AGGCGAGTTTGTTGGCAGCA+TGG 0.549459 1.2:-7526876 None:intergenic
AGAGTGGATGTCATGATCAC+AGG 0.550527 1.2:-7526989 None:intergenic
TCTTCGCCGTCGATGGAGGT+TGG 0.551535 1.2:+7527512 MS.gene016116:CDS
ACGCCGGAGCAAAACAGTCC+CGG 0.553478 1.2:+7527249 MS.gene016116:CDS
CGGAACGACGCCATCTGCGG+TGG 0.553872 1.2:-7527274 None:intergenic
GGCGGTGGAAAGAGAAGCTA+GGG 0.558883 1.2:+7527634 MS.gene016116:CDS
ATTGTTGTTGGCTGTTGTTG+TGG 0.558963 1.2:-7527065 None:intergenic
GACGGCGCCGATGACGGTGG+CGG 0.560155 1.2:+7527601 MS.gene016116:CDS
ACCAGACGGAAACGTGATGA+CGG 0.572547 1.2:+7527541 MS.gene016116:CDS
TGATTGAAATTGTAAGTGAA+AGG 0.578430 1.2:-7527378 None:intergenic
TGTGACGCGGTGGTGGCGGG+AGG 0.581988 1.2:-7526896 None:intergenic
TTTGTTGGCAGCATGGATGT+TGG 0.587996 1.2:-7526869 None:intergenic
CACCGGAACGACGCCATCTG+CGG 0.589463 1.2:-7527277 None:intergenic
GACAGAGACGGCGCCGATGA+CGG 0.593724 1.2:+7527595 MS.gene016116:CDS
CTCGACCTAGAATTAAAGGA+AGG 0.595175 1.2:+7527738 MS.gene016116:CDS
CCAAACGACGGCGACAGAGA+CGG 0.604022 1.2:+7527583 MS.gene016116:CDS
TGGAATCACATGTGAGACAA+AGG 0.606070 1.2:-7526849 None:intergenic
GATACATAGAGCAGCTGCGT+CGG 0.618915 1.2:-7526965 None:intergenic
AAAGGAAAGCTGAATCAGAA+CGG 0.631900 1.2:-7526831 None:intergenic
ACAACTCCAACCTCCATCGA+CGG 0.637687 1.2:-7527518 None:intergenic
GTGTTCGTGTTCGTGTTCGG+TGG 0.637730 1.2:-7527319 None:intergenic
GAGCTAGTGGGTTAGCAGAG+TGG 0.641063 1.2:-7527005 None:intergenic
TCATACATAGTTCAACAGGA+AGG 0.676360 1.2:-7527821 None:intergenic
AGAGACGGCGCCGATGACGG+TGG 0.685333 1.2:+7527598 MS.gene016116:CDS
GAGGTTGGAGTTGTACCAGA+CGG 0.695762 1.2:+7527527 MS.gene016116:CDS
CAACGCTAAAACAGACACGC+CGG 0.702951 1.2:+7527233 MS.gene016116:CDS
TGAGAGGGACACGTTCGTGG+CGG 0.705181 1.2:-7527029 None:intergenic
CTTGGCAGAGTGTGACGCGG+TGG 0.706255 1.2:-7526906 None:intergenic
AGACTTGGCAGAGTGTGACG+CGG 0.706454 1.2:-7526909 None:intergenic
TGACGAAATCGTCAATTTCG+GGG 0.717237 1.2:-7527206 None:intergenic
GTACTGCGGTTACCAAACGA+CGG 0.762753 1.2:+7527571 MS.gene016116:CDS
GGTGGCGGTTCCGATGACGG+CGG 0.772550 1.2:+7527616 MS.gene016116:CDS
ATGACGGAGATATCGTACTG+CGG 0.812252 1.2:+7527557 MS.gene016116:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTTTTTTTGAATTT+TGG - chr1.2:7527423-7527442 None:intergenic 10.0%
!! AAATATGAATTTAATTGCAG+AGG + chr1.2:7527781-7527800 MS.gene016116:CDS 20.0%
!!! ATTTCTTTTTTGTGTTGTTT+AGG + chr1.2:7527487-7527506 MS.gene016116:intron 20.0%
! TGATTGAAATTGTAAGTGAA+AGG - chr1.2:7527381-7527400 None:intergenic 25.0%
AATTGAGATCAGGGAATTTA+GGG - chr1.2:7527170-7527189 None:intergenic 30.0%
ATTCAGAGTTCAAATTGAAG+AGG - chr1.2:7527461-7527480 None:intergenic 30.0%
GAGAGAAAAGAAAGAATAGA+AGG + chr1.2:7527669-7527688 MS.gene016116:CDS 30.0%
TAATTGAGATCAGGGAATTT+AGG - chr1.2:7527171-7527190 None:intergenic 30.0%
! TTTTGGATTTCTCGTTCTTA+CGG - chr1.2:7527406-7527425 None:intergenic 30.0%
AAAGGAAAGCTGAATCAGAA+CGG - chr1.2:7526834-7526853 None:intergenic 35.0%
AGTGACGAAATCGTCAATTT+CGG - chr1.2:7527211-7527230 None:intergenic 35.0%
AGTGAGAGTAATTGAGATCA+GGG - chr1.2:7527179-7527198 None:intergenic 35.0%
CAGAGAAGAATGATTGTTGT+TGG - chr1.2:7527080-7527099 None:intergenic 35.0%
GAAACTCGACCTAGAATTAA+AGG + chr1.2:7527734-7527753 MS.gene016116:CDS 35.0%
GCAAACCTTCCTTTAATTCT+AGG - chr1.2:7527746-7527765 None:intergenic 35.0%
TAGTGAGAGTAATTGAGATC+AGG - chr1.2:7527180-7527199 None:intergenic 35.0%
TTAATTGCAGAGGACGAATA+CGG + chr1.2:7527791-7527810 MS.gene016116:CDS 35.0%
! AAAGAGAAGCTAGGGTTTTA+AGG + chr1.2:7527642-7527661 MS.gene016116:CDS 35.0%
! ATTTAGGGTTTGAAGGAGTT+TGG - chr1.2:7527155-7527174 None:intergenic 35.0%
!!! GTAAGTGAAAGGTTTTGAGT+TGG - chr1.2:7527370-7527389 None:intergenic 35.0%
CTCGACCTAGAATTAAAGGA+AGG + chr1.2:7527738-7527757 MS.gene016116:CDS 40.0%
GTGACGAAATCGTCAATTTC+GGG - chr1.2:7527210-7527229 None:intergenic 40.0%
TGACGAAATCGTCAATTTCG+GGG - chr1.2:7527209-7527228 None:intergenic 40.0%
TGGAATCACATGTGAGACAA+AGG - chr1.2:7526852-7526871 None:intergenic 40.0%
! ATTGTTGTTGGCTGTTGTTG+TGG - chr1.2:7527068-7527087 None:intergenic 40.0%
! TCAGGGAATTTAGGGTTTGA+AGG - chr1.2:7527162-7527181 None:intergenic 40.0%
AGAGTGGATGTCATGATCAC+AGG - chr1.2:7526992-7527011 None:intergenic 45.0%
GTAGTGTTCGTGTTCGTGTT+CGG - chr1.2:7527325-7527344 None:intergenic 45.0%
TTTGTTGGCAGCATGGATGT+TGG - chr1.2:7526872-7526891 None:intergenic 45.0%
! ATGACGGAGATATCGTACTG+CGG + chr1.2:7527557-7527576 MS.gene016116:CDS 45.0%
!! ACGGCAGAATAGTGTTGCTT+TGG - chr1.2:7526815-7526834 None:intergenic 45.0%
!! TGTTGCTTTGGATGACTTGC+AGG - chr1.2:7526803-7526822 None:intergenic 45.0%
AAGAAGCAGAAGCTGCTTCC+TGG + chr1.2:7527124-7527143 MS.gene016116:CDS 50.0%
ACAACTCCAACCTCCATCGA+CGG - chr1.2:7527521-7527540 None:intergenic 50.0%
ACCAGACGGAAACGTGATGA+CGG + chr1.2:7527541-7527560 MS.gene016116:CDS 50.0%
AGCAGCTTCTGCTTCTTCGT+TGG - chr1.2:7527121-7527140 None:intergenic 50.0%
AGCTTCTGCTTCTTCGTTGG+TGG - chr1.2:7527118-7527137 None:intergenic 50.0%
CAACGCTAAAACAGACACGC+CGG + chr1.2:7527233-7527252 MS.gene016116:CDS 50.0%
CCAAGTCTGTGAACAAGCTC+CGG + chr1.2:7526924-7526943 MS.gene016116:CDS 50.0%
GAGGTTGGAGTTGTACCAGA+CGG + chr1.2:7527527-7527546 MS.gene016116:CDS 50.0%
GATACATAGAGCAGCTGCGT+CGG - chr1.2:7526968-7526987 None:intergenic 50.0%
GTACTGCGGTTACCAAACGA+CGG + chr1.2:7527571-7527590 MS.gene016116:CDS 50.0%
TGAAGGAGTTTGGAGAAGCC+AGG - chr1.2:7527145-7527164 None:intergenic 50.0%
TTAGGTATCTTCGCCGTCGA+TGG + chr1.2:7527505-7527524 MS.gene016116:intron 50.0%
! GTTGTTGGCTGTTGTTGTGG+TGG - chr1.2:7527065-7527084 None:intergenic 50.0%
!!! GTTTTGCTCTGAGACTGCAC+CGG - chr1.2:7527297-7527316 None:intergenic 50.0%
AGACTTGGCAGAGTGTGACG+CGG - chr1.2:7526912-7526931 None:intergenic 55.0%
GGCGGTGGAAAGAGAAGCTA+GGG + chr1.2:7527634-7527653 MS.gene016116:CDS 55.0%
GTGTTCGTGTTCGTGTTCGG+TGG - chr1.2:7527322-7527341 None:intergenic 55.0%
GTTGGCTGTTGTTGTGGTGG+TGG - chr1.2:7527062-7527081 None:intergenic 55.0%
TCCGTCATCACGTTTCCGTC+TGG - chr1.2:7527545-7527564 None:intergenic 55.0%
TCTCTTTCCACCGCCGTCAT+CGG - chr1.2:7527629-7527648 None:intergenic 55.0%
! CCGGAGCTTGTTCACAGACT+TGG - chr1.2:7526927-7526946 None:intergenic 55.0%
! TTCGTGTTCGTGTTCGGTGG+TGG - chr1.2:7527319-7527338 None:intergenic 55.0%
!! AGGCGAGTTTGTTGGCAGCA+TGG - chr1.2:7526879-7526898 None:intergenic 55.0%
!! GAGCTAGTGGGTTAGCAGAG+TGG - chr1.2:7527008-7527027 None:intergenic 55.0%
!! GCTGTTGTTGTGGTGGTGGA+AGG - chr1.2:7527058-7527077 None:intergenic 55.0%
!! GTTGTTGTGGTGGTGGAAGG+TGG - chr1.2:7527055-7527074 None:intergenic 55.0%
ACGCCGGAGCAAAACAGTCC+CGG + chr1.2:7527249-7527268 MS.gene016116:CDS 60.0%
ATCGGAACCGCCACCGTCAT+CGG - chr1.2:7527611-7527630 None:intergenic 60.0%
CCAAACGACGGCGACAGAGA+CGG + chr1.2:7527583-7527602 MS.gene016116:CDS 60.0%
CGGCGGTGGAAAGAGAAGCT+AGG + chr1.2:7527633-7527652 MS.gene016116:CDS 60.0%
GCTTTGCAGGTGACGTGAGC+CGG - chr1.2:7526946-7526965 None:intergenic 60.0%
GGTATCTTCGCCGTCGATGG+AGG + chr1.2:7527508-7527527 MS.gene016116:intron 60.0%
TCTTCGCCGTCGATGGAGGT+TGG + chr1.2:7527512-7527531 MS.gene016116:CDS 60.0%
TGAGAGGGACACGTTCGTGG+CGG - chr1.2:7527032-7527051 None:intergenic 60.0%
TGGTGAGAGGGACACGTTCG+TGG - chr1.2:7527035-7527054 None:intergenic 60.0%
! GTGCCGGGACTGTTTTGCTC+CGG - chr1.2:7527255-7527274 None:intergenic 60.0%
!! GGTGGTGGAAGGTGGTGAGA+GGG - chr1.2:7527047-7527066 None:intergenic 60.0%
!! TGGTGGTGGAAGGTGGTGAG+AGG - chr1.2:7527048-7527067 None:intergenic 60.0%
CACCGCAGATGGCGTCGTTC+CGG + chr1.2:7527275-7527294 MS.gene016116:CDS 65.0%
CACCGGAACGACGCCATCTG+CGG - chr1.2:7527280-7527299 None:intergenic 65.0%
CCGTCTCTGTCGCCGTCGTT+TGG - chr1.2:7527586-7527605 None:intergenic 65.0%
CTTGGCAGAGTGTGACGCGG+TGG - chr1.2:7526909-7526928 None:intergenic 65.0%
GTTCGTGGCGGCGAGCTAGT+GGG - chr1.2:7527020-7527039 None:intergenic 65.0%
! AGAGTGTGACGCGGTGGTGG+CGG - chr1.2:7526903-7526922 None:intergenic 65.0%
! GACGGTGGCGGTTCCGATGA+CGG + chr1.2:7527613-7527632 MS.gene016116:CDS 65.0%
! GTGGCGGGAGGCGAGTTTGT+TGG - chr1.2:7526887-7526906 None:intergenic 65.0%
!! AGCAGCTGCGTCGGCTTTGC+AGG - chr1.2:7526959-7526978 None:intergenic 65.0%
!! GACAGAGACGGCGCCGATGA+CGG + chr1.2:7527595-7527614 MS.gene016116:CDS 65.0%
ACGCCATCTGCGGTGGTGCC+GGG - chr1.2:7527270-7527289 None:intergenic 70.0%
AGTCCCGGCACCACCGCAGA+TGG + chr1.2:7527264-7527283 MS.gene016116:CDS 70.0%
CGGAACGACGCCATCTGCGG+TGG - chr1.2:7527277-7527296 None:intergenic 70.0%
CGTTCGTGGCGGCGAGCTAG+TGG - chr1.2:7527021-7527040 None:intergenic 70.0%
GACGCCATCTGCGGTGGTGC+CGG - chr1.2:7527271-7527290 None:intergenic 70.0%
GGCAGAGTGTGACGCGGTGG+TGG - chr1.2:7526906-7526925 None:intergenic 70.0%
! GAGTGTGACGCGGTGGTGGC+GGG - chr1.2:7526902-7526921 None:intergenic 70.0%
! GGTGGCGGTTCCGATGACGG+CGG + chr1.2:7527616-7527635 MS.gene016116:CDS 70.0%
!! AGAGACGGCGCCGATGACGG+TGG + chr1.2:7527598-7527617 MS.gene016116:CDS 70.0%
! GGCGGTTCCGATGACGGCGG+TGG + chr1.2:7527619-7527638 MS.gene016116:CDS 75.0%
!! GACGGCGCCGATGACGGTGG+CGG + chr1.2:7527601-7527620 MS.gene016116:CDS 75.0%
!! TGTGACGCGGTGGTGGCGGG+AGG - chr1.2:7526899-7526918 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 7526778 7527832 7526778 ID=MS.gene016116
chr1.2 mRNA 7526778 7527832 7526778 ID=MS.gene016116.t1;Parent=MS.gene016116
chr1.2 exon 7526778 7527404 7526778 ID=MS.gene016116.t1.exon1;Parent=MS.gene016116.t1
chr1.2 CDS 7526778 7527404 7526778 ID=cds.MS.gene016116.t1;Parent=MS.gene016116.t1
chr1.2 exon 7527509 7527832 7527509 ID=MS.gene016116.t1.exon2;Parent=MS.gene016116.t1
chr1.2 CDS 7527509 7527832 7527509 ID=cds.MS.gene016116.t1;Parent=MS.gene016116.t1
Gene Sequence

>MS.gene016116

ATGGCTACTAAGCTATGTGATTCCTGCAAGTCATCCAAAGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTTTGTCTCACATGTGATTCCAACATCCATGCTGCCAACAAACTCGCCTCCCGCCACCACCGCGTCACACTCTGCCAAGTCTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGCTCTATGTATCTCCTGTGATCATGACATCCACTCTGCTAACCCACTAGCTCGCCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAGCCAACAACAATCATTCTTCTCTGAAAATGATCACGATGCCACCAACGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATTGACGATTTCGTCACTGTCAACGCTAAAACAGACACGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTAAGAACGAGAAATCCAAAATTCAAAAAAAAAATGATGAATCGTGAAATTTACCTCTTCAATTTGAACTCTGAATGTTCTTATTTCTTTTTTGTGTTGTTTAGGTATCTTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGACGGAGATATCGTACTGCGGTTACCAAACGACGGCGACAGAGACGGCGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTTAAGGTACAGAGAGAAAAGAAAGAATAGAAGGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCTTATGCAGAAACTCGACCTAGAATTAAAGGAAGGTTTGCGAAACGTTCAGATTTAAATATGAATTTAATTGCAGAGGACGAATACGGCGTCGTTCCTTCCTGTTGA
Protein sequence

>MS.gene016116.t1

MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAALCISCDHDIHSANPLARRHERVPLTTFHHHNNSQQQSFFSENDHDATNEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNAKTDTPEQNSPGTTADGVVPVQSQSKTTTEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTVAVPMTAVEREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC