AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01615

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01615.t1 MTR_2g017890 78.487 423 51 2 1 423 1 383 0.0 640
MS.gene01615.t1 MTR_8g087540 48.308 325 162 3 2 325 1 320 4.47e-100 304
MS.gene01615.t1 MTR_2g043940 52.976 168 79 0 67 234 14 181 2.01e-52 180
MS.gene01615.t1 MTR_5g029680 45.946 185 96 2 14 194 31 215 2.01e-52 183
MS.gene01615.t1 MTR_4g077970 41.270 189 100 2 13 194 10 194 4.46e-47 169
MS.gene01615.t1 MTR_3g104550 38.835 206 113 3 14 212 45 244 2.54e-44 159
MS.gene01615.t1 MTR_7g095680 41.436 181 106 0 14 194 48 228 2.83e-44 158
MS.gene01615.t1 MTR_2g100680 35.055 271 144 7 7 258 23 280 3.31e-43 157
MS.gene01615.t1 MTR_6g043060 61.111 108 42 0 5 112 12 119 7.19e-43 153
MS.gene01615.t1 MTR_2g100670 40.704 199 105 3 2 194 14 205 1.19e-42 152
MS.gene01615.t1 MTR_2g100670 40.909 198 104 3 2 193 122 312 5.17e-42 153
MS.gene01615.t1 MTR_1g102860 39.362 188 110 1 6 193 31 214 9.23e-42 150
MS.gene01615.t1 MTR_8g105780 44.086 186 100 2 13 194 20 205 4.60e-41 149
MS.gene01615.t1 MTR_1g061170 37.017 181 109 1 13 193 47 222 5.40e-41 151
MS.gene01615.t1 MTR_8g083100 55.469 128 50 2 16 143 23 143 6.78e-41 152
MS.gene01615.t1 MTR_5g017470 42.775 173 69 2 15 157 9 181 5.15e-40 144
MS.gene01615.t1 MTR_6g086805 40.331 181 101 2 13 193 9 182 2.32e-39 144
MS.gene01615.t1 MTR_1g071360 37.766 188 103 2 6 193 23 196 1.64e-38 142
MS.gene01615.t1 MTR_1g071360 37.766 188 103 2 6 193 20 193 3.58e-38 142
MS.gene01615.t1 MTR_5g010680 57.944 107 44 1 3 108 11 117 1.99e-37 139
MS.gene01615.t1 MTR_3g101870 60.000 100 39 1 9 107 17 116 1.83e-35 134
MS.gene01615.t1 MTR_1g100777 55.660 106 46 1 4 108 6 111 5.10e-35 132
MS.gene01615.t1 MTR_5g089170 58.000 100 41 1 9 107 18 117 2.57e-33 125
MS.gene01615.t1 MTR_7g091370 48.571 105 54 0 15 119 22 126 4.37e-32 122
MS.gene01615.t1 MTR_0020s0020 57.609 92 39 0 15 106 33 124 8.41e-32 124
MS.gene01615.t1 MTR_4g088900 37.195 164 87 3 14 165 32 191 5.90e-27 107
MS.gene01615.t1 MTR_4g045757 64.789 71 25 0 2 72 1 71 1.85e-25 99.4
MS.gene01615.t1 MTR_5g047190 50.515 97 41 2 23 112 1 97 5.10e-25 98.6
MS.gene01615.t1 MTR_4g045760 50.000 116 41 2 290 405 3 101 5.38e-24 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01615.t1 AT4G18880 44.308 325 166 7 1 316 1 319 4.66e-71 229
MS.gene01615.t1 AT5G45710 40.663 332 153 6 2 333 1 288 1.45e-64 211
MS.gene01615.t1 AT5G45710 40.663 332 153 6 2 333 1 288 1.45e-64 211
MS.gene01615.t1 AT4G17750 44.503 191 95 1 14 193 51 241 1.97e-50 177
MS.gene01615.t1 AT1G32330 42.932 191 103 2 9 193 31 221 1.66e-47 169
MS.gene01615.t1 AT1G32330 42.932 191 103 2 9 193 31 221 1.83e-47 169
MS.gene01615.t1 AT2G26150 38.647 207 116 2 14 212 43 246 1.32e-46 164
MS.gene01615.t1 AT2G26150 38.647 207 116 2 14 212 43 246 1.32e-46 164
MS.gene01615.t1 AT3G02990 42.077 183 105 1 13 194 21 203 5.52e-46 165
MS.gene01615.t1 AT5G16820 40.860 186 108 1 11 194 23 208 7.55e-45 162
MS.gene01615.t1 AT5G16820 40.860 186 108 1 11 194 23 208 7.55e-45 162
MS.gene01615.t1 AT4G13980 39.706 204 109 3 16 213 24 219 9.37e-45 162
MS.gene01615.t1 AT5G03720 37.838 185 104 2 13 194 53 229 8.21e-43 155
MS.gene01615.t1 AT5G03720 37.838 185 104 2 13 194 53 229 8.21e-43 155
MS.gene01615.t1 AT3G22830 40.761 184 105 1 14 193 60 243 9.43e-43 155
MS.gene01615.t1 AT1G67970 40.201 199 114 4 13 209 17 212 1.62e-39 145
MS.gene01615.t1 AT5G62020 51.880 133 56 2 2 133 9 134 1.73e-39 144
MS.gene01615.t1 AT3G24520 39.227 181 84 2 13 193 15 169 2.14e-39 144
MS.gene01615.t1 AT5G43840 41.304 184 89 3 12 193 14 180 7.96e-39 141
MS.gene01615.t1 AT3G63350 38.710 186 93 3 15 193 28 199 1.11e-37 138
MS.gene01615.t1 AT3G51910 35.106 188 104 2 6 193 20 189 3.45e-37 137
MS.gene01615.t1 AT1G46264 58.333 108 41 2 1 107 22 126 5.24e-37 138
MS.gene01615.t1 AT5G54070 36.765 204 108 5 13 214 69 253 6.62e-35 132
MS.gene01615.t1 AT4G36990 57.576 99 42 0 15 113 14 112 1.33e-34 130
MS.gene01615.t1 AT2G41690 54.369 103 46 1 14 115 39 141 2.68e-34 128
MS.gene01615.t1 AT4G11660 59.783 92 37 0 15 106 59 150 9.73e-34 130
MS.gene01615.t1 AT5G45710 32.766 235 115 5 99 333 1 192 1.63e-23 99.0
MS.gene01615.t1 AT5G45710 32.766 235 115 5 99 333 1 192 1.63e-23 99.0
MS.gene01615.t1 AT4G18870 47.727 88 46 0 15 102 146 233 1.18e-21 94.7
MS.gene01615.t1 AT4G18870 45.545 101 53 2 2 102 1 99 2.16e-21 94.0
MS.gene01615.t1 AT1G77570 37.778 90 53 2 16 102 27 116 1.95e-15 73.6
MS.gene01615.t1 AT2G26150 27.397 146 95 2 75 212 49 191 2.91e-14 73.6
MS.gene01615.t1 AT2G26150 27.397 146 95 2 75 212 49 191 2.91e-14 73.6

Find 80 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATTATAATAATGAATTT+TGG 0.100021 2.2:+66869436 MS.gene01615:CDS
GTTACGACGGGTTGTTCTTC+TGG 0.216236 2.2:-66869399 None:intergenic
CAACTGATGACATTGTTTCT+TGG 0.248061 2.2:+66867736 MS.gene01615:CDS
AGTTGCATACAAGATGTTAT+TGG 0.278275 2.2:-66869141 None:intergenic
AACTGATGACATTGTTTCTT+GGG 0.286701 2.2:+66867737 MS.gene01615:CDS
TCTCACTAAGACTTATGATA+TGG 0.289830 2.2:+66867701 MS.gene01615:CDS
TCTTCTGGTTCAACAAAATC+AGG 0.301153 2.2:-66869384 None:intergenic
TAAGGTAATTTAGACTCTTT+TGG 0.303752 2.2:-66869526 None:intergenic
TGAAACTTGAGAAGTTATTA+TGG 0.310950 2.2:-66867833 None:intergenic
ATGCTAGCTACATTACAAAA+AGG 0.320103 2.2:-66868916 None:intergenic
GAAAAGTTGATACACAACTA+TGG 0.322439 2.2:+66868497 MS.gene01615:CDS
GGCTCAGTTGCAACCGGATT+AGG 0.358087 2.2:-66869306 None:intergenic
AGCTCAGTTGCATCATGATT+AGG 0.360536 2.2:-66869267 None:intergenic
CGAGTCGAGTTGGCCAATAT+TGG 0.365906 2.2:+66869499 MS.gene01615:CDS
GGCTCAGTTGCAACTGGATC+AGG 0.370479 2.2:-66869228 None:intergenic
TTATTATAATCAGTAGTAAC+CGG 0.377060 2.2:-66869426 None:intergenic
CGGATGTCTTTGAAAATAAG+AGG 0.384067 2.2:-66869079 None:intergenic
AAGAAACCTGGGAATGAGTT+AGG 0.397323 2.2:+66868838 MS.gene01615:CDS
ACAGTACTCGAAGGGTCATT+TGG 0.400137 2.2:+66868762 MS.gene01615:CDS
TGTAATCGTTGTTCCTAATC+CGG 0.417246 2.2:+66869293 MS.gene01615:CDS
ACCGCTGGCTCAGTTGCAAC+CGG 0.439728 2.2:-66869312 None:intergenic
GTTTCTTGAACTTCAGAGAA+AGG 0.439975 2.2:+66868708 MS.gene01615:CDS
ACATCTGGCTCAGTTGCAAC+TGG 0.441122 2.2:-66869234 None:intergenic
GGGAATGATGGAAGAAGCTC+AGG 0.447000 2.2:+66867650 None:intergenic
CATGTCGACTTCTAGTGACT+TGG 0.447575 2.2:-66869181 None:intergenic
GAGAAAAGGAGGCACCTTAT+CGG 0.448416 2.2:-66867682 None:intergenic
TTAGGATTAACAACTACATC+TGG 0.472983 2.2:-66869249 None:intergenic
GATGACTCAATGAATTATGT+AGG 0.484303 2.2:+66869114 MS.gene01615:CDS
CGAATCATCAATGACAAGTT+GGG 0.487340 2.2:+66869032 MS.gene01615:CDS
ACAATACTTGCAGGACGAAT+CGG 0.489021 2.2:+66869461 MS.gene01615:CDS
CATGAGCATTCTGCGAAGAA+TGG 0.490641 2.2:-66868597 None:intergenic
CATATACCTAACTCATTCCC+AGG 0.495219 2.2:-66868844 None:intergenic
GAGTCATCAAAATCTACATT+CGG 0.497020 2.2:-66869099 None:intergenic
TCATAAGTCTTAGTGAGAAA+AGG 0.497418 2.2:-66867696 None:intergenic
TGAACTTCAGAGAAAGGAAG+AGG 0.498686 2.2:+66868714 MS.gene01615:CDS
TCGCAGAATGCTCATGGCCA+AGG 0.501991 2.2:+66868604 MS.gene01615:CDS
GGTCAAGTGCTGAAGAAACC+TGG 0.503718 2.2:+66868826 MS.gene01615:CDS
TCGAATCATCAATGACAAGT+TGG 0.505281 2.2:+66869031 MS.gene01615:CDS
TTATTATGGTTAAAGTATTG+AGG 0.507346 2.2:-66867819 None:intergenic
CGCAGAATGCTCATGGCCAA+GGG 0.508087 2.2:+66868605 MS.gene01615:CDS
GAAACAATGTCATCAGTTGA+AGG 0.519956 2.2:-66867732 None:intergenic
CAATATTGGCCAACTCGACT+CGG 0.523538 2.2:-66869498 None:intergenic
CTAGTGGAGCAGCAACCCCT+TGG 0.524076 2.2:-66868621 None:intergenic
AAAAGTTGATACACAACTAT+GGG 0.529213 2.2:+66868498 MS.gene01615:CDS
TCAGGGTAGTAGTTCCGATA+AGG 0.544906 2.2:+66867668 MS.gene01615:CDS
CATTCTTCGCAGAATGCTCA+TGG 0.549403 2.2:+66868598 MS.gene01615:CDS
TGTCGATCGGATTCTGCTAG+TGG 0.551922 2.2:-66868637 None:intergenic
CAAAGTGTGCTCTCTTATGT+TGG 0.554182 2.2:+66868805 MS.gene01615:CDS
ATGTCGACTTCTAGTGACTT+GGG 0.560272 2.2:-66869180 None:intergenic
TAAGACTTATGATATGGTTG+AGG 0.565627 2.2:+66867707 MS.gene01615:CDS
AGCATTCAATGTCTGTCGAT+CGG 0.568118 2.2:-66868650 None:intergenic
AGCTAGCATTGAAGATCATG+TGG 0.568546 2.2:+66868930 MS.gene01615:CDS
GGATCAGGAACAACTACCAC+TGG 0.574913 2.2:-66869213 None:intergenic
GATAAAATTACAGTACTCGA+AGG 0.578742 2.2:+66868753 MS.gene01615:CDS
ACTGATGACATTGTTTCTTG+GGG 0.579964 2.2:+66867738 MS.gene01615:CDS
GTCAAGTGCTGAAGAAACCT+GGG 0.583533 2.2:+66868827 MS.gene01615:CDS
TCAGGGACAACTGCAACAGT+TGG 0.589380 2.2:-66869366 None:intergenic
GAAGATATACCGAGTCGAGT+TGG 0.590581 2.2:+66869489 MS.gene01615:CDS
TCAGAATCATCGATTACCGC+TGG 0.591006 2.2:-66869327 None:intergenic
TATTATAATCAGTAGTAACC+GGG 0.593232 2.2:-66869425 None:intergenic
AGGAACAACTACCACTGGCA+TGG 0.597086 2.2:-66869208 None:intergenic
CTTCTGGTTCAACAAAATCA+GGG 0.603287 2.2:-66869383 None:intergenic
TCCGGTTGCAACTGAGCCAG+CGG 0.609490 2.2:+66869311 MS.gene01615:CDS
GTCATTTGGAAACAGTGGAA+AGG 0.611941 2.2:+66868776 MS.gene01615:CDS
TAAGTCTTAGTGAGAAAAGG+AGG 0.624943 2.2:-66867693 None:intergenic
ATCTTATGAAGAATATCCAA+AGG 0.635890 2.2:+66868557 MS.gene01615:CDS
ATAAAATTACAGTACTCGAA+GGG 0.640506 2.2:+66868754 MS.gene01615:CDS
GTCTCTTGTATCATTAAACG+TGG 0.643044 2.2:+66868993 MS.gene01615:CDS
GTAACCGGGGATGTTACGAC+GGG 0.648034 2.2:-66869411 None:intergenic
ACAACCCGTCGTAACATCCC+CGG 0.648155 2.2:+66869407 MS.gene01615:CDS
ATCATCAATGACAAGTTGGG+AGG 0.652244 2.2:+66869035 MS.gene01615:CDS
CGACATGAACTCCATGCCAG+TGG 0.675176 2.2:+66869197 MS.gene01615:CDS
GCTAGCATTGAAGATCATGT+GGG 0.675912 2.2:+66868931 MS.gene01615:CDS
AATGATACAAGAGACACACT+CGG 0.677326 2.2:-66868985 None:intergenic
AGTAACCGGGGATGTTACGA+CGG 0.681684 2.2:-66869412 None:intergenic
GAAGGGTCATTTGGAAACAG+TGG 0.685082 2.2:+66868771 MS.gene01615:CDS
ATGATACAAGAGACACACTC+GGG 0.691023 2.2:-66868984 None:intergenic
ATTATAATCAGTAGTAACCG+GGG 0.692233 2.2:-66869424 None:intergenic
GCAGAATGCTCATGGCCAAG+GGG 0.714345 2.2:+66868606 MS.gene01615:CDS
GGAATGATGGAAGAAGCTCA+GGG 0.733848 2.2:+66867651 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTATAATAATGAATTTT+GGG + chr2.2:66869437-66869456 MS.gene01615:CDS 10.0%
!!! TTATTGTTTTTTTATTAAGT+TGG - chr2.2:66868307-66868326 None:intergenic 10.0%
!! TTAAATAAATCAATCAAATC+AGG - chr2.2:66868095-66868114 None:intergenic 15.0%
!!! CTGATTATAATAATGAATTT+TGG + chr2.2:66869436-66869455 MS.gene01615:CDS 15.0%
!!! GATTATAATAATGAATTTTG+GGG + chr2.2:66869438-66869457 MS.gene01615:CDS 15.0%
!!! TTTTTTTAATCATTCCATTA+AGG + chr2.2:66867978-66867997 MS.gene01615:intron 15.0%
!! AAGCAATAAAAAAACCTTAA+TGG - chr2.2:66867995-66868014 None:intergenic 20.0%
!! ATAAAAGAACAAAGCTTAAT+TGG - chr2.2:66868262-66868281 None:intergenic 20.0%
!! TTATTATAATCAGTAGTAAC+CGG - chr2.2:66869429-66869448 None:intergenic 20.0%
!!! TTAAGCTTATGTATTTTCAT+AGG + chr2.2:66868111-66868130 MS.gene01615:intron 20.0%
!!! TTATTATGGTTAAAGTATTG+AGG - chr2.2:66867822-66867841 None:intergenic 20.0%
! AAGCAATCAATAAACCTTAA+TGG - chr2.2:66868440-66868459 None:intergenic 25.0%
! AGCAATCAATAAACCTTAAT+GGG - chr2.2:66868439-66868458 None:intergenic 25.0%
! ATAAAATTACAGTACTCGAA+GGG + chr2.2:66868754-66868773 MS.gene01615:CDS 25.0%
! ATCTTATGAAGAATATCCAA+AGG + chr2.2:66868557-66868576 MS.gene01615:CDS 25.0%
! CTTTAATGTACTTCATTTCA+TGG + chr2.2:66867884-66867903 MS.gene01615:intron 25.0%
! GAGGAGATTAAAAATTATCT+TGG + chr2.2:66869054-66869073 MS.gene01615:CDS 25.0%
! TATTATAATCAGTAGTAACC+GGG - chr2.2:66869428-66869447 None:intergenic 25.0%
! TGAAACTTGAGAAGTTATTA+TGG - chr2.2:66867836-66867855 None:intergenic 25.0%
!! TTACAAAAAGGATTGTTTCT+CGG - chr2.2:66868907-66868926 None:intergenic 25.0%
!! TTAGACTGTGTTATGTTTTT+CGG + chr2.2:66868013-66868032 MS.gene01615:intron 25.0%
!!! AAAAGTTGATACACAACTAT+GGG + chr2.2:66868498-66868517 MS.gene01615:CDS 25.0%
!!! CTGATGAAAGTTTTATTGTT+TGG + chr2.2:66867766-66867785 MS.gene01615:CDS 25.0%
AGTTGCATACAAGATGTTAT+TGG - chr2.2:66869144-66869163 None:intergenic 30.0%
ATGCTAGCTACATTACAAAA+AGG - chr2.2:66868919-66868938 None:intergenic 30.0%
ATTATAATCAGTAGTAACCG+GGG - chr2.2:66869427-66869446 None:intergenic 30.0%
CAAAAACTACAAAGCGAAAA+AGG + chr2.2:66868875-66868894 MS.gene01615:CDS 30.0%
GAGTCATCAAAATCTACATT+CGG - chr2.2:66869102-66869121 None:intergenic 30.0%
GATAAAATTACAGTACTCGA+AGG + chr2.2:66868753-66868772 MS.gene01615:CDS 30.0%
GATGACTCAATGAATTATGT+AGG + chr2.2:66869114-66869133 MS.gene01615:CDS 30.0%
GTTAGAAAAATTGATCATCG+TGG + chr2.2:66868048-66868067 MS.gene01615:intron 30.0%
TAAGACTTATGATATGGTTG+AGG + chr2.2:66867707-66867726 MS.gene01615:CDS 30.0%
TCATAAGTCTTAGTGAGAAA+AGG - chr2.2:66867699-66867718 None:intergenic 30.0%
TCTCACTAAGACTTATGATA+TGG + chr2.2:66867701-66867720 MS.gene01615:CDS 30.0%
TTAGGATTAACAACTACATC+TGG - chr2.2:66869252-66869271 None:intergenic 30.0%
! AACTGATGACATTGTTTCTT+GGG + chr2.2:66867737-66867756 MS.gene01615:CDS 30.0%
! TTGAACTGTCTTATGGTTTT+TGG + chr2.2:66868458-66868477 MS.gene01615:intron 30.0%
!! GAAAAGTTGATACACAACTA+TGG + chr2.2:66868497-66868516 MS.gene01615:CDS 30.0%
!!! TATGGTTTTTGGTTTGATCA+GGG + chr2.2:66868469-66868488 MS.gene01615:intron 30.0%
!!! TTATGGTTTTTGGTTTGATC+AGG + chr2.2:66868468-66868487 MS.gene01615:intron 30.0%
!!! TTGCTTTTTATCACCCATTA+AGG + chr2.2:66868423-66868442 MS.gene01615:intron 30.0%
!!! TTTTTATTAAGTTGGCAGTG+AGG - chr2.2:66868299-66868318 None:intergenic 30.0%
AAACTACAAAGCGAAAAAGG+AGG + chr2.2:66868878-66868897 MS.gene01615:CDS 35.0%
AATGATACAAGAGACACACT+CGG - chr2.2:66868988-66869007 None:intergenic 35.0%
CAGCTTAATACCTATGTAAG+CGG + chr2.2:66867861-66867880 MS.gene01615:intron 35.0%
CGAATCATCAATGACAAGTT+GGG + chr2.2:66869032-66869051 MS.gene01615:CDS 35.0%
GAAACAATGTCATCAGTTGA+AGG - chr2.2:66867735-66867754 None:intergenic 35.0%
GTCTCTTGTATCATTAAACG+TGG + chr2.2:66868993-66869012 MS.gene01615:CDS 35.0%
GTTTCTTGAACTTCAGAGAA+AGG + chr2.2:66868708-66868727 MS.gene01615:CDS 35.0%
TAAGTCTTAGTGAGAAAAGG+AGG - chr2.2:66867696-66867715 None:intergenic 35.0%
TACATTAAAGCCGCTTACAT+AGG - chr2.2:66867874-66867893 None:intergenic 35.0%
TCGAATCATCAATGACAAGT+TGG + chr2.2:66869031-66869050 MS.gene01615:CDS 35.0%
TGATTGCTTGAACTGTCTTA+TGG + chr2.2:66868451-66868470 MS.gene01615:intron 35.0%
TGTAATCGTTGTTCCTAATC+CGG + chr2.2:66869293-66869312 MS.gene01615:CDS 35.0%
! ACTGATGACATTGTTTCTTG+GGG + chr2.2:66867738-66867757 MS.gene01615:CDS 35.0%
! CAACTGATGACATTGTTTCT+TGG + chr2.2:66867736-66867755 MS.gene01615:CDS 35.0%
! CGGATGTCTTTGAAAATAAG+AGG - chr2.2:66869082-66869101 None:intergenic 35.0%
! TATAAACTGTTTTGCGCCTT+TGG - chr2.2:66868576-66868595 None:intergenic 35.0%
!! CTTCTGGTTCAACAAAATCA+GGG - chr2.2:66869386-66869405 None:intergenic 35.0%
!! TCTTCTGGTTCAACAAAATC+AGG - chr2.2:66869387-66869406 None:intergenic 35.0%
AAGAAACCTGGGAATGAGTT+AGG + chr2.2:66868838-66868857 MS.gene01615:CDS 40.0%
ACAATACTTGCAGGACGAAT+CGG + chr2.2:66869461-66869480 MS.gene01615:CDS 40.0%
AGCATTCAATGTCTGTCGAT+CGG - chr2.2:66868653-66868672 None:intergenic 40.0%
AGCTCAGTTGCATCATGATT+AGG - chr2.2:66869270-66869289 None:intergenic 40.0%
ATGATACAAGAGACACACTC+GGG - chr2.2:66868987-66869006 None:intergenic 40.0%
CAAAGTGTGCTCTCTTATGT+TGG + chr2.2:66868805-66868824 MS.gene01615:CDS 40.0%
CATATACCTAACTCATTCCC+AGG - chr2.2:66868847-66868866 None:intergenic 40.0%
GTCATTTGGAAACAGTGGAA+AGG + chr2.2:66868776-66868795 MS.gene01615:CDS 40.0%
TGAACTTCAGAGAAAGGAAG+AGG + chr2.2:66868714-66868733 MS.gene01615:CDS 40.0%
! AGCTAGCATTGAAGATCATG+TGG + chr2.2:66868930-66868949 MS.gene01615:CDS 40.0%
! ATCATCAATGACAAGTTGGG+AGG + chr2.2:66869035-66869054 MS.gene01615:CDS 40.0%
! CGCTTTGTAGTTTTTGTCAG+TGG - chr2.2:66868871-66868890 None:intergenic 40.0%
! CTCTTTTGGTACGCCAATAT+TGG - chr2.2:66869515-66869534 None:intergenic 40.0%
! GCTAGCATTGAAGATCATGT+GGG + chr2.2:66868931-66868950 MS.gene01615:CDS 40.0%
!! ATGTCGACTTCTAGTGACTT+GGG - chr2.2:66869183-66869202 None:intergenic 40.0%
!! ATTTTGGGGACAATACTTGC+AGG + chr2.2:66869452-66869471 MS.gene01615:CDS 40.0%
ACAGTACTCGAAGGGTCATT+TGG + chr2.2:66868762-66868781 MS.gene01615:CDS 45.0%
CAATATTGGCCAACTCGACT+CGG - chr2.2:66869501-66869520 None:intergenic 45.0%
CATGAGCATTCTGCGAAGAA+TGG - chr2.2:66868600-66868619 None:intergenic 45.0%
CATTCTTCGCAGAATGCTCA+TGG + chr2.2:66868598-66868617 MS.gene01615:CDS 45.0%
GAAGATATACCGAGTCGAGT+TGG + chr2.2:66869489-66869508 MS.gene01615:CDS 45.0%
GAAGGGTCATTTGGAAACAG+TGG + chr2.2:66868771-66868790 MS.gene01615:CDS 45.0%
TCAGGGTAGTAGTTCCGATA+AGG + chr2.2:66867668-66867687 MS.gene01615:CDS 45.0%
! TCAGAATCATCGATTACCGC+TGG - chr2.2:66869330-66869349 None:intergenic 45.0%
!! CATGTCGACTTCTAGTGACT+TGG - chr2.2:66869184-66869203 None:intergenic 45.0%
!! GAGAAAAGGAGGCACCTTAT+CGG - chr2.2:66867685-66867704 None:intergenic 45.0%
!! GTCAAGTGCTGAAGAAACCT+GGG + chr2.2:66868827-66868846 MS.gene01615:CDS 45.0%
AGGAACAACTACCACTGGCA+TGG - chr2.2:66869211-66869230 None:intergenic 50.0%
AGTAACCGGGGATGTTACGA+CGG - chr2.2:66869415-66869434 None:intergenic 50.0%
GGATCAGGAACAACTACCAC+TGG - chr2.2:66869216-66869235 None:intergenic 50.0%
TCAGGGACAACTGCAACAGT+TGG - chr2.2:66869369-66869388 None:intergenic 50.0%
TGTCGATCGGATTCTGCTAG+TGG - chr2.2:66868640-66868659 None:intergenic 50.0%
! ACATCTGGCTCAGTTGCAAC+TGG - chr2.2:66869237-66869256 None:intergenic 50.0%
!! CGAGTCGAGTTGGCCAATAT+TGG + chr2.2:66869499-66869518 MS.gene01615:CDS 50.0%
!! GGTCAAGTGCTGAAGAAACC+TGG + chr2.2:66868826-66868845 MS.gene01615:CDS 50.0%
!! GTTACGACGGGTTGTTCTTC+TGG - chr2.2:66869402-66869421 None:intergenic 50.0%
ACAACCCGTCGTAACATCCC+CGG + chr2.2:66869407-66869426 MS.gene01615:CDS 55.0%
CGACATGAACTCCATGCCAG+TGG + chr2.2:66869197-66869216 MS.gene01615:CDS 55.0%
CGCAGAATGCTCATGGCCAA+GGG + chr2.2:66868605-66868624 MS.gene01615:CDS 55.0%
GCAGAATGCTCATGGCCAAG+GGG + chr2.2:66868606-66868625 MS.gene01615:CDS 55.0%
GGCTCAGTTGCAACCGGATT+AGG - chr2.2:66869309-66869328 None:intergenic 55.0%
GGCTCAGTTGCAACTGGATC+AGG - chr2.2:66869231-66869250 None:intergenic 55.0%
GTAACCGGGGATGTTACGAC+GGG - chr2.2:66869414-66869433 None:intergenic 55.0%
TCGCAGAATGCTCATGGCCA+AGG + chr2.2:66868604-66868623 MS.gene01615:CDS 55.0%
CTAGTGGAGCAGCAACCCCT+TGG - chr2.2:66868624-66868643 None:intergenic 60.0%
TCCGGTTGCAACTGAGCCAG+CGG + chr2.2:66869311-66869330 MS.gene01615:CDS 60.0%
!! ACCGCTGGCTCAGTTGCAAC+CGG - chr2.2:66869315-66869334 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 66867654 66869539 66867654 ID=MS.gene01615
chr2.2 mRNA 66867654 66869539 66867654 ID=MS.gene01615.t1;Parent=MS.gene01615
chr2.2 exon 66867654 66867875 66867654 ID=MS.gene01615.t1.exon1;Parent=MS.gene01615.t1
chr2.2 CDS 66867654 66867875 66867654 ID=cds.MS.gene01615.t1;Parent=MS.gene01615.t1
chr2.2 exon 66868490 66869539 66868490 ID=MS.gene01615.t1.exon2;Parent=MS.gene01615.t1
chr2.2 CDS 66868490 66869539 66868490 ID=cds.MS.gene01615.t1;Parent=MS.gene01615.t1
Gene Sequence

>MS.gene01615

ATGATGGAAGAAGCTCAGGGTAGTAGTTCCGATAAGGTGCCTCCTTTTCTCACTAAGACTTATGATATGGTTGAGGATCCTTCAACTGATGACATTGTTTCTTGGGGTGCTACTGATGAAAGTTTTATTGTTTGGAATAAACTAGATTTTGAAAAAGATGTGTTGCCTCAATACTTTAACCATAATAACTTCTCAAGTTTCATCAGACAGCTTAATACCTATGTAAGCGGCTTTAATGTACTTCATTTCATGGATTTTTAAATTGTTTTGTTATTTCGTTAATGTATAATGTTTTGTTATTGTCTTAATGTTGTCTTTTTTTTTTTTTTTTAATCATTCCATTAAGGTTTTTTTATTGCTTAGACTGTGTTATGTTTTTCGGTTTGATTATGTCGTTAGAAAAATTGATCATCGTGGATTTGTTAATTTTTTTATGAGCCTGATTTGATTGATTTATTTAAGCTTATGTATTTTCATAGGCACGTGCAAGACAAATTGAGATAGCTTATAGAAAAACAACTTATAACATGTTCATAAGTTGTTCAATTTATTTTATTTTCGTTGTGAGATAGCTTATGATATAAGCACTTTATTAAGTTGTTGATCCAATTAAGCTTTGTTCTTTTATTGTTACTGTATTTTCCTCACTGCCAACTTAATAAAAAAACAATAACAATAACAACAAAAATCATATAAGTGTTTATGCTATTAGCACTTAATTAACTTGCTCATCGAAACAATGCTTTGATCTTCTGTTTTTTTTTTTTTTTTGCTTTTTATCACCCATTAAGGTTTATTGATTGCTTGAACTGTCTTATGGTTTTTGGTTTGATCAGGGCTTTAGAAAAGTTGATACACAACTATGGGAATACGCAAACGATGATTTCGTAAGAAATCAAAAACATCTTATGAAGAATATCCAAAGGCGCAAAACAGTTTATAGCCATTCTTCGCAGAATGCTCATGGCCAAGGGGTTGCTGCTCCACTAGCAGAATCCGATCGACAGACATTGAATGCTCATATTCAAAAACTTAAACACGACAATGAACAAATGTTTCTTGAACTTCAGAGAAAGGAAGAGGAGAGAAAAATGCATGAGATAAAATTACAGTACTCGAAGGGTCATTTGGAAACAGTGGAAAGGAAACATCAAAGTGTGCTCTCTTATGTTGGTCAAGTGCTGAAGAAACCTGGGAATGAGTTAGGTATATGTCCACTGACAAAAACTACAAAGCGAAAAAGGAGGATTCCGAGAAACAATCCTTTTTGTAATGTAGCTAGCATTGAAGATCATGTGGGAACTTCTCATGTAATACATAAAGAAAACGACCCGAGTGTGTCTCTTGTATCATTAAACGTGGAACAATTAAATTTGCTCGAATCATCAATGACAAGTTGGGAGGAGATTAAAAATTATCTTGGTGCCTCTTATTTTCAAAGACATCCGAATGTAGATTTTGATGACTCAATGAATTATGTAGGCTGTCCAATAACATCTTGTATGCAACTAGATGTTGAAGTTCAGCCCAAGTCACTAGAAGTCGACATGAACTCCATGCCAGTGGTAGTTGTTCCTGATCCAGTTGCAACTGAGCCAGATGTAGTTGTTAATCCTAATCATGATGCAACTGAGCTGAATGTAATCGTTGTTCCTAATCCGGTTGCAACTGAGCCAGCGGTAATCGATGATTCTGATCTTGTTGTAGTTGAGCCAACTGTTGCAGTTGTCCCTGATTTTGTTGAACCAGAAGAACAACCCGTCGTAACATCCCCGGTTACTACTGATTATAATAATGAATTTTGGGGACAATACTTGCAGGACGAATCGGAAAATGAAGATATACCGAGTCGAGTTGGCCAATATTGGCGTACCAAAAGAGTCTAA
Protein sequence

>MS.gene01615.t1

MMEEAQGSSSDKVPPFLTKTYDMVEDPSTDDIVSWGATDESFIVWNKLDFEKDVLPQYFNHNNFSSFIRQLNTYGFRKVDTQLWEYANDDFVRNQKHLMKNIQRRKTVYSHSSQNAHGQGVAAPLAESDRQTLNAHIQKLKHDNEQMFLELQRKEEERKMHEIKLQYSKGHLETVERKHQSVLSYVGQVLKKPGNELGICPLTKTTKRKRRIPRNNPFCNVASIEDHVGTSHVIHKENDPSVSLVSLNVEQLNLLESSMTSWEEIKNYLGASYFQRHPNVDFDDSMNYVGCPITSCMQLDVEVQPKSLEVDMNSMPVVVVPDPVATEPDVVVNPNHDATELNVIVVPNPVATEPAVIDDSDLVVVEPTVAVVPDFVEPEEQPVVTSPVTTDYNNEFWGQYLQDESENEDIPSRVGQYWRTKRV